Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29721.t1 | XP_003616743.2 | 96.8 | 155 | 5 | 0 | 1 | 155 | 25 | 179 | 1.00E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29721.t1 | G7K7C1 | 96.8 | 155 | 5 | 0 | 1 | 155 | 25 | 179 | 7.4e-73 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054473 | MS.gene29721 | 0.807679 | 4.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29721.t1 | MTR_5g083810 | 96.774 | 155 | 5 | 0 | 1 | 155 | 25 | 179 | 5.84e-108 | 305 |
| MS.gene29721.t1 | MTR_3g466150 | 46.835 | 158 | 82 | 1 | 1 | 156 | 1 | 158 | 1.96e-45 | 146 |
| MS.gene29721.t1 | MTR_7g072470 | 58.537 | 123 | 50 | 1 | 27 | 149 | 6 | 127 | 6.01e-43 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29721.t1 | AT2G40435 | 64.103 | 156 | 54 | 2 | 1 | 155 | 1 | 155 | 9.94e-68 | 202 |
| MS.gene29721.t1 | AT3G56220 | 57.419 | 155 | 63 | 3 | 1 | 153 | 1 | 154 | 2.69e-57 | 176 |
| MS.gene29721.t1 | AT2G40435 | 64.341 | 129 | 45 | 1 | 1 | 128 | 1 | 129 | 6.52e-56 | 172 |
| MS.gene29721.t1 | AT2G40435 | 65.354 | 127 | 43 | 1 | 1 | 126 | 1 | 127 | 8.21e-56 | 171 |
| MS.gene29721.t1 | AT3G56220 | 57.937 | 126 | 50 | 3 | 1 | 124 | 1 | 125 | 1.73e-43 | 140 |
| MS.gene29721.t1 | AT1G29270 | 34.752 | 141 | 83 | 6 | 1 | 135 | 1 | 138 | 4.95e-12 | 60.5 |
Find 22 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATTACCATAGGCAAGT+TGG | 0.394555 | 5.3:+67914393 | None:intergenic |
| TCAATTACCATAGGCAAGTT+GGG | 0.413845 | 5.3:+67914394 | None:intergenic |
| TACAGTGGAAACCCTAGAAA+AGG | 0.442701 | 5.3:-67913835 | MS.gene29721:CDS |
| AGAGATGAGGCTTACAGTGC+TGG | 0.462983 | 5.3:-67913742 | MS.gene29721:CDS |
| CTTTGCAATTTACACTTGAT+CGG | 0.474337 | 5.3:+67911989 | None:intergenic |
| TATTGAAAATCTAAAGGAAA+AGG | 0.484456 | 5.3:-67914470 | MS.gene29721:CDS |
| GCTTACAGTGCTGGAAGCTA+GGG | 0.492214 | 5.3:-67913733 | MS.gene29721:CDS |
| GGCTTACAGTGCTGGAAGCT+AGG | 0.499324 | 5.3:-67913734 | MS.gene29721:CDS |
| CCACAATCCCAACTTGCCTA+TGG | 0.504234 | 5.3:-67914401 | MS.gene29721:intron |
| TGTAAGCCTCATCTCTTCAA+TGG | 0.510071 | 5.3:+67913749 | None:intergenic |
| AAAGTATATTGAAAATCTAA+AGG | 0.516255 | 5.3:-67914476 | MS.gene29721:CDS |
| CCATAGGCAAGTTGGGATTG+TGG | 0.527764 | 5.3:+67914401 | None:intergenic |
| ACAGTGGAAACCCTAGAAAA+GGG | 0.541907 | 5.3:-67913834 | MS.gene29721:CDS |
| TTACCTCTCCTCCAACAGCT+TGG | 0.548657 | 5.3:+67913685 | None:intergenic |
| TTTCCAAGCTGTTGGAGGAG+AGG | 0.549162 | 5.3:-67913688 | MS.gene29721:intron |
| TTGAAGCCATTGAAGAGATG+AGG | 0.583640 | 5.3:-67913755 | MS.gene29721:CDS |
| TGATGCATCGATTACGATCG+AGG | 0.609202 | 5.3:+67914498 | None:intergenic |
| GTATTGAAACAAGCATACCT+TGG | 0.613680 | 5.3:+67913778 | None:intergenic |
| CAAGCTGTGAAACAAGCAGT+GGG | 0.658275 | 5.3:-67912041 | MS.gene29721:CDS |
| TGGACTTGTGCAGGTTACAG+TGG | 0.658893 | 5.3:-67913850 | MS.gene29721:intron |
| CTTATGTAGAGTGAAGATCA+AGG | 0.661626 | 5.3:-67912080 | MS.gene29721:intron |
| ACAAGCTGTGAAACAAGCAG+TGG | 0.701888 | 5.3:-67912042 | MS.gene29721:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGACTATATATTATTATTA+GGG | + | chr5.3:67914951-67914970 | None:intergenic | 10.0% |
| !! | ATTAATTCCAATAATAAAAA+TGG | + | chr5.3:67912224-67912243 | None:intergenic | 10.0% |
| !! | TATATTAATTTAATGAGAAA+TGG | + | chr5.3:67913933-67913952 | None:intergenic | 10.0% |
| !! | AAAGTATATTGAAAATCTAA+AGG | - | chr5.3:67912682-67912701 | MS.gene29721:intron | 15.0% |
| !! | AACTTATAAACAATTAAACA+TGG | - | chr5.3:67912987-67913006 | MS.gene29721:intron | 15.0% |
| !! | GAAGACTATATATTATTATT+AGG | + | chr5.3:67914952-67914971 | None:intergenic | 15.0% |
| !! | TAATAAAAAAATAGCAAACT+TGG | + | chr5.3:67912251-67912270 | None:intergenic | 15.0% |
| !!! | AAAATTTGAAATGGATTTTA+TGG | - | chr5.3:67913284-67913303 | MS.gene29721:intron | 15.0% |
| !!! | AATTCACTTTTTTTTTTCTT+GGG | - | chr5.3:67913159-67913178 | MS.gene29721:intron | 15.0% |
| !!! | GAATATTCTTTTATAGAATT+GGG | + | chr5.3:67912164-67912183 | None:intergenic | 15.0% |
| !!! | TAATACCATATTAATTTGAA+CGG | + | chr5.3:67913802-67913821 | None:intergenic | 15.0% |
| !!! | TAATTCACTTTTTTTTTTCT+TGG | - | chr5.3:67913158-67913177 | MS.gene29721:intron | 15.0% |
| !!! | TGAATATTCTTTTATAGAAT+TGG | + | chr5.3:67912165-67912184 | None:intergenic | 15.0% |
| !! | AACTAGTAAGTGTTTATATA+TGG | + | chr5.3:67914538-67914557 | None:intergenic | 20.0% |
| !! | ACTAGTAAGTGTTTATATAT+GGG | + | chr5.3:67914537-67914556 | None:intergenic | 20.0% |
| !! | ATATAAAAACGTTACTCATT+TGG | - | chr5.3:67914842-67914861 | MS.gene29721:intron | 20.0% |
| !! | ATTAATTTAATGAGAAATGG+TGG | + | chr5.3:67913930-67913949 | None:intergenic | 20.0% |
| !! | GAAATTCAAATTTAACAGTT+TGG | + | chr5.3:67913520-67913539 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | - | chr5.3:67913816-67913835 | MS.gene29721:CDS | 20.0% |
| !! | TATAAAAACGTTACTCATTT+GGG | - | chr5.3:67914843-67914862 | MS.gene29721:intron | 20.0% |
| !! | TATTGAAAATCTAAAGGAAA+AGG | - | chr5.3:67912688-67912707 | MS.gene29721:intron | 20.0% |
| !! | TGCAAGTATAAAATTTGAAA+TGG | - | chr5.3:67913275-67913294 | MS.gene29721:intron | 20.0% |
| !! | TTAATTCTAGTGAAGAAAAT+TGG | + | chr5.3:67914632-67914651 | None:intergenic | 20.0% |
| !! | TTATTATTAGGGTTAAGATT+AGG | + | chr5.3:67914940-67914959 | None:intergenic | 20.0% |
| !! | TTTCATTGAGAATATATTGA+TGG | + | chr5.3:67912138-67912157 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTTAGGATAGAT+AGG | + | chr5.3:67913110-67913129 | None:intergenic | 20.0% |
| !!! | GAGTAACGTTTTTATATAAA+GGG | + | chr5.3:67914839-67914858 | None:intergenic | 20.0% |
| !!! | GCATATCAATTAAATTTTCA+TGG | - | chr5.3:67914735-67914754 | MS.gene29721:intron | 20.0% |
| !!! | TGAGTAACGTTTTTATATAA+AGG | + | chr5.3:67914840-67914859 | None:intergenic | 20.0% |
| !!! | TTTTCTAATACTTCTTCTTA+TGG | - | chr5.3:67912603-67912622 | MS.gene29721:intron | 20.0% |
| ! | AAGAATCGTATATTATCGAA+GGG | - | chr5.3:67914007-67914026 | MS.gene29721:intron | 25.0% |
| ! | AATGGAAAGAAAAGAAAGAT+AGG | + | chr5.3:67912105-67912124 | None:intergenic | 25.0% |
| ! | ACAAAAATATTGACAAGTGA+AGG | + | chr5.3:67914802-67914821 | None:intergenic | 25.0% |
| ! | ATAAAAACGTTACTCATTTG+GGG | - | chr5.3:67914844-67914863 | MS.gene29721:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+AGG | - | chr5.3:67914539-67914558 | MS.gene29721:intron | 25.0% |
| ! | CACTATATGTATATATCTGT+TGG | + | chr5.3:67914663-67914682 | None:intergenic | 25.0% |
| ! | GAGAAATTGTTTACAATAAC+TGG | + | chr5.3:67913196-67913215 | None:intergenic | 25.0% |
| ! | GCAGAAAGAATGAATTAATA+AGG | + | chr5.3:67912325-67912344 | None:intergenic | 25.0% |
| ! | GTACATTGAATCATTGATAT+TGG | - | chr5.3:67914893-67914912 | MS.gene29721:intron | 25.0% |
| ! | GTTTCTTAATTGGATATATC+CGG | - | chr5.3:67914287-67914306 | MS.gene29721:intron | 25.0% |
| ! | TTAAGATTAGGCATCATTTA+TGG | + | chr5.3:67914928-67914947 | None:intergenic | 25.0% |
| ! | TTCGATAATATACGATTCTT+CGG | + | chr5.3:67914007-67914026 | None:intergenic | 25.0% |
| !! | TATAAGAAATCCCTTTTCTA+GGG | + | chr5.3:67913337-67913356 | None:intergenic | 25.0% |
| !! | TATCTTTCTTTTCTTTCCAT+TGG | - | chr5.3:67912104-67912123 | MS.gene29721:intron | 25.0% |
| !! | TTATAAGAAATCCCTTTTCT+AGG | + | chr5.3:67913338-67913357 | None:intergenic | 25.0% |
| !!! | AGGTAAGATATTGTTGTTTT+TGG | - | chr5.3:67913490-67913509 | MS.gene29721:intron | 25.0% |
| !!! | GAAACTTGTTAAAAACAAGT+CGG | - | chr5.3:67914109-67914128 | MS.gene29721:intron | 25.0% |
| !!! | GTCTCTTTGAATTGTTTTAT+TGG | + | chr5.3:67913079-67913098 | None:intergenic | 25.0% |
| !!! | TTTGAAATGGATTTTATGGA+TGG | - | chr5.3:67913288-67913307 | MS.gene29721:intron | 25.0% |
| !!! | TTTGGGTCCATTTTTATTAT+TGG | - | chr5.3:67912214-67912233 | MS.gene29721:intron | 25.0% |
| AATAAAAATGGACCCAAATC+AGG | + | chr5.3:67912212-67912231 | None:intergenic | 30.0% | |
| AATTCTGCTGCAAGTTATTT+AGG | + | chr5.3:67913139-67913158 | None:intergenic | 30.0% | |
| ACTTCTCCAAAACATGAATA+TGG | - | chr5.3:67913877-67913896 | MS.gene29721:intron | 30.0% | |
| AGAATTACACCCTCAAAATA+TGG | - | chr5.3:67913722-67913741 | MS.gene29721:CDS | 30.0% | |
| ATTCTGCTGCAAGTTATTTA+GGG | + | chr5.3:67913138-67913157 | None:intergenic | 30.0% | |
| CACATAGCTGATAAGAATAT+AGG | + | chr5.3:67912555-67912574 | None:intergenic | 30.0% | |
| CGAAACCGTTCAAATTAATA+TGG | - | chr5.3:67913794-67913813 | MS.gene29721:CDS | 30.0% | |
| CTATATTCTTATCAGCTATG+TGG | - | chr5.3:67912553-67912572 | MS.gene29721:intron | 30.0% | |
| GAAGAATCGTATATTATCGA+AGG | - | chr5.3:67914006-67914025 | MS.gene29721:intron | 30.0% | |
| GCTGATAAGAATATAGGATA+AGG | + | chr5.3:67912549-67912568 | None:intergenic | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | - | chr5.3:67914228-67914247 | MS.gene29721:intron | 30.0% | |
| TATACTCTTGTTCCTGATTT+GGG | - | chr5.3:67912197-67912216 | MS.gene29721:intron | 30.0% | |
| TATGTGGAGCTTATTTGATA+TGG | - | chr5.3:67912569-67912588 | MS.gene29721:intron | 30.0% | |
| TGGGACAAGCAATAAAAAAT+TGG | - | chr5.3:67915136-67915155 | MS.gene29721:CDS | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | + | chr5.3:67914211-67914230 | None:intergenic | 30.0% | |
| TTGTTAATATCGCGAGTTAA+TGG | + | chr5.3:67913022-67913041 | None:intergenic | 30.0% | |
| ! | AAGCATCAACTGTGAATTTT+CGG | - | chr5.3:67914158-67914177 | MS.gene29721:intron | 30.0% |
| ! | CTTCTTATGGTTTTTATGCA+TGG | - | chr5.3:67912616-67912635 | MS.gene29721:intron | 30.0% |
| ! | GTACTTTTCTCAATTACCAT+AGG | + | chr5.3:67912776-67912795 | None:intergenic | 30.0% |
| ! | TATGGTTTTTATGCATGGTT+TGG | - | chr5.3:67912621-67912640 | MS.gene29721:intron | 30.0% |
| ! | TTCGGTGTAAAGAATCAAAT+GGG | - | chr5.3:67914176-67914195 | MS.gene29721:intron | 30.0% |
| ! | TTTCGGTGTAAAGAATCAAA+TGG | - | chr5.3:67914175-67914194 | MS.gene29721:intron | 30.0% |
| !! | AATTTTTGTTTCCAAGCTGT+TGG | - | chr5.3:67913462-67913481 | MS.gene29721:intron | 30.0% |
| !! | CTGCTTTTGGATAAACAATT+TGG | - | chr5.3:67912872-67912891 | MS.gene29721:intron | 30.0% |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | - | chr5.3:67914277-67914296 | MS.gene29721:intron | 30.0% |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | + | chr5.3:67913872-67913891 | None:intergenic | 30.0% |
| !!! | TTTTTTAGGATAGATAGGCA+AGG | + | chr5.3:67913105-67913124 | None:intergenic | 30.0% |
| AAACAAAACGCGTTTGCTTA+AGG | + | chr5.3:67914271-67914290 | None:intergenic | 35.0% | |
| AAAGCATATCCAGAAACTTC+CGG | + | chr5.3:67914309-67914328 | None:intergenic | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | - | chr5.3:67914229-67914248 | MS.gene29721:intron | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | - | chr5.3:67914063-67914082 | MS.gene29721:intron | 35.0% | |
| ACTATGAAAGAACTAGTGTG+TGG | + | chr5.3:67914599-67914618 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | + | chr5.3:67913559-67913578 | None:intergenic | 35.0% | |
| AGAACACTCTTAATACCGAA+GGG | - | chr5.3:67914064-67914083 | MS.gene29721:intron | 35.0% | |
| AGATAGGAGATAGAAAATGC+AGG | + | chr5.3:67912089-67912108 | None:intergenic | 35.0% | |
| AGGATACACATACACTACTA+TGG | + | chr5.3:67912529-67912548 | None:intergenic | 35.0% | |
| ATTGATGGAGAGAAATCCAA+TGG | + | chr5.3:67912123-67912142 | None:intergenic | 35.0% | |
| CTATACTCTTGTTCCTGATT+TGG | - | chr5.3:67912196-67912215 | MS.gene29721:intron | 35.0% | |
| CTATGAAAGAACTAGTGTGT+GGG | + | chr5.3:67914598-67914617 | None:intergenic | 35.0% | |
| CTCACAAGTGTAATGTTAGT+AGG | - | chr5.3:67913043-67913062 | MS.gene29721:intron | 35.0% | |
| CTTATGTAGAGTGAAGATCA+AGG | - | chr5.3:67915078-67915097 | MS.gene29721:intron | 35.0% | |
| CTTCGGTAGATGATAGAATT+TGG | + | chr5.3:67913542-67913561 | None:intergenic | 35.0% | |
| CTTGTTAAAAACAAGTCGGA+GGG | - | chr5.3:67914113-67914132 | MS.gene29721:intron | 35.0% | |
| GACTATGAACTTAAGACCAA+GGG | - | chr5.3:67914029-67914048 | MS.gene29721:intron | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | + | chr5.3:67914572-67914591 | None:intergenic | 35.0% | |
| GATAGGAGATAGAAAATGCA+GGG | + | chr5.3:67912088-67912107 | None:intergenic | 35.0% | |
| GTAACAAAAAACGAGTGACT+TGG | - | chr5.3:67914227-67914246 | MS.gene29721:intron | 35.0% | |
| GTATTGAAACAAGCATACCT+TGG | + | chr5.3:67913383-67913402 | None:intergenic | 35.0% | |
| TAAAAATGTCCCACATTGGA+GGG | + | chr5.3:67914568-67914587 | None:intergenic | 35.0% | |
| TCAATTACCATAGGCAAGTT+GGG | + | chr5.3:67912767-67912786 | None:intergenic | 35.0% | |
| TCGGTGTAAAGAATCAAATG+GGG | - | chr5.3:67914177-67914196 | MS.gene29721:intron | 35.0% | |
| TCGTTATTGATGAACTTAGC+TGG | + | chr5.3:67915001-67915020 | None:intergenic | 35.0% | |
| TGATTCAATGTACAGCAACT+CGG | + | chr5.3:67914886-67914905 | None:intergenic | 35.0% | |
| TTAAAAATGTCCCACATTGG+AGG | + | chr5.3:67914569-67914588 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | + | chr5.3:67913676-67913695 | None:intergenic | 35.0% | |
| TTTGAACCTAGATATGCATG+TGG | + | chr5.3:67912380-67912399 | None:intergenic | 35.0% | |
| ! | AACGATTGAGCCATATTTTG+AGG | + | chr5.3:67913735-67913754 | None:intergenic | 35.0% |
| ! | ACTTGTTAAAAACAAGTCGG+AGG | - | chr5.3:67914112-67914131 | MS.gene29721:intron | 35.0% |
| ! | GATCAGAATTTGACTGCTTT+TGG | - | chr5.3:67912859-67912878 | MS.gene29721:intron | 35.0% |
| ! | GGATGAGAGCATAAAAGTAT+AGG | + | chr5.3:67912359-67912378 | None:intergenic | 35.0% |
| ! | GTAGTGCCATATTCATGTTT+TGG | + | chr5.3:67913886-67913905 | None:intergenic | 35.0% |
| ! | TTCTGGATATGCTTTTGGAT+CGG | - | chr5.3:67914314-67914333 | MS.gene29721:intron | 35.0% |
| ! | TTTTCAGCAAAAAGCAACCA+AGG | - | chr5.3:67913363-67913382 | MS.gene29721:intron | 35.0% |
| ! | TTTTCATAAGCCCTTCAAGA+CGG | + | chr5.3:67912955-67912974 | None:intergenic | 35.0% |
| ! | TTTTCGTTAACCGTCTTGAA+GGG | - | chr5.3:67912942-67912961 | MS.gene29721:intron | 35.0% |
| !! | ACGATTGAGCCATATTTTGA+GGG | + | chr5.3:67913734-67913753 | None:intergenic | 35.0% |
| !! | GAAGTTTCTGGATATGCTTT+TGG | - | chr5.3:67914309-67914328 | MS.gene29721:intron | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | + | chr5.3:67913869-67913888 | None:intergenic | 35.0% |
| !!! | AGGGTCGAGACTTTTTTTTT+AGG | + | chr5.3:67913119-67913138 | None:intergenic | 35.0% |
| AACTTAAGACCAAGGGACTA+TGG | - | chr5.3:67914036-67914055 | MS.gene29721:intron | 40.0% | |
| ACAGTGGAAACCCTAGAAAA+GGG | - | chr5.3:67913324-67913343 | MS.gene29721:intron | 40.0% | |
| ACTTAAGACCAAGGGACTAT+GGG | - | chr5.3:67914037-67914056 | MS.gene29721:intron | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | + | chr5.3:67913622-67913641 | None:intergenic | 40.0% | |
| CATCTACCGAAGTTGTTACT+AGG | - | chr5.3:67913550-67913569 | MS.gene29721:intron | 40.0% | |
| CCATCATTCTCATGCATGAT+GGG | + | chr5.3:67915045-67915064 | None:intergenic | 40.0% | |
| CTCAATTACCATAGGCAAGT+TGG | + | chr5.3:67912768-67912787 | None:intergenic | 40.0% | |
| GAGAAGAGAGGAAAAAACAC+AGG | - | chr5.3:67914135-67914154 | MS.gene29721:intron | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | - | chr5.3:67914028-67914047 | MS.gene29721:intron | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | + | chr5.3:67913828-67913847 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | + | chr5.3:67913850-67913869 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | + | chr5.3:67913911-67913930 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | + | chr5.3:67913677-67913696 | None:intergenic | 40.0% | |
| GTTCACCCGTTCACAAAATT+GGG | - | chr5.3:67914478-67914497 | MS.gene29721:CDS | 40.0% | |
| TACAGTGGAAACCCTAGAAA+AGG | - | chr5.3:67913323-67913342 | MS.gene29721:intron | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | + | chr5.3:67913623-67913642 | None:intergenic | 40.0% | |
| TCCATCATTCTCATGCATGA+TGG | + | chr5.3:67915046-67915065 | None:intergenic | 40.0% | |
| TCTCATCCACATGCATATCT+AGG | - | chr5.3:67912371-67912390 | MS.gene29721:intron | 40.0% | |
| TGGATATATCCGGAAGTTTC+TGG | - | chr5.3:67914297-67914316 | MS.gene29721:intron | 40.0% | |
| TGTAAGCCTCATCTCTTCAA+TGG | + | chr5.3:67913412-67913431 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | - | chr5.3:67914073-67914092 | MS.gene29721:intron | 40.0% | |
| TTAGGATAGATAGGCAAGGA+TGG | + | chr5.3:67913101-67913120 | None:intergenic | 40.0% | |
| TTGAACGGTTTCGAATAGAG+CGG | + | chr5.3:67913787-67913806 | None:intergenic | 40.0% | |
| TTGAAGCCATTGAAGAGATG+AGG | - | chr5.3:67913403-67913422 | MS.gene29721:intron | 40.0% | |
| ! | ATTTGGGGTTCTCGAGAAAA+GGG | - | chr5.3:67914859-67914878 | MS.gene29721:intron | 40.0% |
| ! | GAGCATAAAAGTATAGGCAG+TGG | + | chr5.3:67912353-67912372 | None:intergenic | 40.0% |
| ! | GTTTTCGTTAACCGTCTTGA+AGG | - | chr5.3:67912941-67912960 | MS.gene29721:intron | 40.0% |
| ! | TCTGGATATGCTTTTGGATC+GGG | - | chr5.3:67914315-67914334 | MS.gene29721:intron | 40.0% |
| !! | TTTTATGGATGGACTTGTGC+AGG | - | chr5.3:67913299-67913318 | MS.gene29721:intron | 40.0% |
| !! | TTTTGTTTCCAAGCTGTTGG+AGG | - | chr5.3:67913465-67913484 | MS.gene29721:intron | 40.0% |
| ACAAGCTGTGAAACAAGCAG+TGG | - | chr5.3:67915116-67915135 | MS.gene29721:CDS | 45.0% | |
| CAAGCTGTGAAACAAGCAGT+GGG | - | chr5.3:67915117-67915136 | MS.gene29721:CDS | 45.0% | |
| CACAAAATTGGGTACCCCAA+GGG | - | chr5.3:67914489-67914508 | MS.gene29721:CDS | 45.0% | |
| CCCATCATGCATGAGAATGA+TGG | - | chr5.3:67915042-67915061 | MS.gene29721:intron | 45.0% | |
| CGTTCACCCGTTCACAAAAT+TGG | - | chr5.3:67914477-67914496 | MS.gene29721:CDS | 45.0% | |
| GCACTACGACCACTCAAATA+TGG | - | chr5.3:67913899-67913918 | MS.gene29721:intron | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | - | chr5.3:67913838-67913857 | MS.gene29721:CDS | 45.0% | |
| TCACAAAATTGGGTACCCCA+AGG | - | chr5.3:67914488-67914507 | MS.gene29721:CDS | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | + | chr5.3:67914082-67914101 | None:intergenic | 45.0% | |
| TTCTTAAGCCCATAGTCCCT+TGG | + | chr5.3:67914048-67914067 | None:intergenic | 45.0% | |
| TTGATCGAAGCCACTCGATA+CGG | - | chr5.3:67913754-67913773 | MS.gene29721:CDS | 45.0% | |
| TTTGTTACGCGTAGCGCTTA+CGG | - | chr5.3:67914357-67914376 | MS.gene29721:intron | 45.0% | |
| ! | CATTTGGGGTTCTCGAGAAA+AGG | - | chr5.3:67914858-67914877 | MS.gene29721:intron | 45.0% |
| ! | GATATGCTTTTGGATCGGGT+CGG | - | chr5.3:67914319-67914338 | MS.gene29721:intron | 45.0% |
| ! | GGGTACCCAATTTTGTGAAC+GGG | + | chr5.3:67914486-67914505 | None:intergenic | 45.0% |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | - | chr5.3:67913591-67913610 | MS.gene29721:intron | 45.0% |
| !! | GGGGTACCCAATTTTGTGAA+CGG | + | chr5.3:67914487-67914506 | None:intergenic | 45.0% |
| !! | TGATGCATCGATTACGATCG+AGG | + | chr5.3:67912663-67912682 | None:intergenic | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | + | chr5.3:67913661-67913680 | None:intergenic | 45.0% |
| !! | CTATAAAAAATTATATAAAT+GGG | + | chr5.3:67912804-67912823 | None:intergenic | 5.0% |
| !! | TCTATAAAAAATTATATAAA+TGG | + | chr5.3:67912805-67912824 | None:intergenic | 5.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | + | chr5.3:67913587-67913606 | None:intergenic | 50.0% | |
| AGAGATGAGGCTTACAGTGC+TGG | - | chr5.3:67913416-67913435 | MS.gene29721:intron | 50.0% | |
| CCACAATCCCAACTTGCCTA+TGG | - | chr5.3:67912757-67912776 | MS.gene29721:intron | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | - | chr5.3:67913613-67913632 | MS.gene29721:intron | 50.0% | |
| TGGACTTGTGCAGGTTACAG+TGG | - | chr5.3:67913308-67913327 | MS.gene29721:intron | 50.0% | |
| TTACCTCTCCTCCAACAGCT+TGG | + | chr5.3:67913476-67913495 | None:intergenic | 50.0% | |
| TTGAGGTGACCCTCCAATGT+GGG | - | chr5.3:67914556-67914575 | MS.gene29721:intron | 50.0% | |
| TTTCCAAGCTGTTGGAGGAG+AGG | - | chr5.3:67913470-67913489 | MS.gene29721:intron | 50.0% | |
| ! | CCATAGGCAAGTTGGGATTG+TGG | + | chr5.3:67912760-67912779 | None:intergenic | 50.0% |
| ! | GCTTACAGTGCTGGAAGCTA+GGG | - | chr5.3:67913425-67913444 | MS.gene29721:intron | 50.0% |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | - | chr5.3:67914197-67914216 | MS.gene29721:intron | 50.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | - | chr5.3:67913566-67913585 | MS.gene29721:intron | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | + | chr5.3:67913658-67913677 | None:intergenic | 50.0% |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | + | chr5.3:67913655-67913674 | None:intergenic | 50.0% |
| ACAAGTCGGAGGGAGAAGAG+AGG | - | chr5.3:67914123-67914142 | MS.gene29721:intron | 55.0% | |
| CGGTTACGTACCGTATCGAG+TGG | + | chr5.3:67913767-67913786 | None:intergenic | 55.0% | |
| GTTGAGGTGACCCTCCAATG+TGG | - | chr5.3:67914555-67914574 | MS.gene29721:intron | 55.0% | |
| ! | ACCTCCAAGAGTGTGCCCTT+GGG | + | chr5.3:67914507-67914526 | None:intergenic | 55.0% |
| ! | GGCTTACAGTGCTGGAAGCT+AGG | - | chr5.3:67913424-67913443 | MS.gene29721:intron | 55.0% |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | - | chr5.3:67914196-67914215 | MS.gene29721:intron | 55.0% |
| ! | CCTCCAAGAGTGTGCCCTTG+GGG | + | chr5.3:67914506-67914525 | None:intergenic | 60.0% |
| ! | GACCTCCAAGAGTGTGCCCT+TGG | + | chr5.3:67914508-67914527 | None:intergenic | 60.0% |
| ! | GTACCCCAAGGGCACACTCT+TGG | - | chr5.3:67914500-67914519 | MS.gene29721:CDS | 60.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | + | chr5.3:67913650-67913669 | None:intergenic | 60.0% |
| CTATCAACCACGCCGCCTCC+AGG | - | chr5.3:67913640-67913659 | MS.gene29721:intron | 65.0% | |
| ! | CCCCAAGGGCACACTCTTGG+AGG | - | chr5.3:67914503-67914522 | MS.gene29721:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 67911998 | 67915182 | 67911998 | ID=MS.gene29721 |
| chr5.3 | mRNA | 67911998 | 67915182 | 67911998 | ID=MS.gene29721.t1;Parent=MS.gene29721 |
| chr5.3 | exon | 67915105 | 67915182 | 67915105 | ID=MS.gene29721.t1.exon1;Parent=MS.gene29721.t1 |
| chr5.3 | CDS | 67915105 | 67915182 | 67915105 | ID=cds.MS.gene29721.t1;Parent=MS.gene29721.t1 |
| chr5.3 | exon | 67914402 | 67914530 | 67914402 | ID=MS.gene29721.t1.exon2;Parent=MS.gene29721.t1 |
| chr5.3 | CDS | 67914402 | 67914530 | 67914402 | ID=cds.MS.gene29721.t1;Parent=MS.gene29721.t1 |
| chr5.3 | exon | 67913689 | 67913859 | 67913689 | ID=MS.gene29721.t1.exon3;Parent=MS.gene29721.t1 |
| chr5.3 | CDS | 67913689 | 67913859 | 67913689 | ID=cds.MS.gene29721.t1;Parent=MS.gene29721.t1 |
| chr5.3 | exon | 67911998 | 67912093 | 67911998 | ID=MS.gene29721.t1.exon4;Parent=MS.gene29721.t1 |
| chr5.3 | CDS | 67911998 | 67912093 | 67911998 | ID=cds.MS.gene29721.t1;Parent=MS.gene29721.t1 |
| Gene Sequence |
| Protein sequence |
