Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29777.t1 | AFK39748.1 | 98.3 | 175 | 3 | 0 | 1 | 175 | 21 | 195 | 1.20E-85 | 325.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29777.t1 | I3SHK6 | 98.3 | 175 | 3 | 0 | 1 | 175 | 21 | 195 | 8.6e-86 | 325.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052208 | MS.gene29777 | 0.805559 | 1.26E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29777.t1 | AT5G12310 | 62.195 | 164 | 48 | 2 | 11 | 166 | 32 | 189 | 1.01e-68 | 209 |
| MS.gene29777.t1 | AT5G19430 | 65.217 | 161 | 55 | 1 | 7 | 167 | 31 | 190 | 1.38e-65 | 201 |
| MS.gene29777.t1 | AT5G19430 | 65.217 | 161 | 55 | 1 | 7 | 167 | 31 | 190 | 1.38e-65 | 201 |
| MS.gene29777.t1 | AT5G19430 | 65.217 | 161 | 55 | 1 | 7 | 167 | 16 | 175 | 1.75e-65 | 201 |
| MS.gene29777.t1 | AT5G19430 | 65.217 | 161 | 55 | 1 | 7 | 167 | 32 | 191 | 2.95e-65 | 201 |
| MS.gene29777.t1 | AT5G19430 | 65.217 | 161 | 55 | 1 | 7 | 167 | 32 | 191 | 2.95e-65 | 201 |
| MS.gene29777.t1 | AT5G19430 | 65.152 | 132 | 45 | 1 | 36 | 167 | 1 | 131 | 3.41e-51 | 163 |
Find 45 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAACTGCTCTTGTTAA+AGG | 0.170382 | 3.4:+38102506 | MS.gene29777:CDS |
| ACACGCTCTTCAACAGTTAA+AGG | 0.198105 | 3.4:-38104533 | None:intergenic |
| CGACCAAGCTTCCAGGATTC+AGG | 0.280448 | 3.4:+38104731 | MS.gene29777:CDS |
| GAGAATCATCATGTTGGATT+TGG | 0.294281 | 3.4:+38102437 | MS.gene29777:CDS |
| ACCGTTCATCGCACACTTGA+TGG | 0.320914 | 3.4:+38103784 | MS.gene29777:CDS |
| TACGGATTGGCAACCGTAGA+TGG | 0.322292 | 3.4:+38104657 | MS.gene29777:CDS |
| AAGTGTTTGCCTACTACTTC+GGG | 0.364680 | 3.4:+38104496 | MS.gene29777:CDS |
| GTTGTTATGTAGATTGAAAA+TGG | 0.365866 | 3.4:+38102401 | None:intergenic |
| AAGGTTGCGAGCATGCTTAC+TGG | 0.371013 | 3.4:+38102525 | MS.gene29777:CDS |
| CTAGATGATGAGGATTATTA+TGG | 0.399827 | 3.4:+38104620 | MS.gene29777:CDS |
| GCCTACTACTTCGGGCTCAA+TGG | 0.404316 | 3.4:+38104504 | MS.gene29777:CDS |
| AAAGTGTTTGCCTACTACTT+CGG | 0.405934 | 3.4:+38104495 | MS.gene29777:CDS |
| GGTCCATCGACCAAGCTTCC+AGG | 0.418687 | 3.4:+38104724 | MS.gene29777:CDS |
| GTGTAACATGCATCCTTCAT+TGG | 0.426196 | 3.4:+38103704 | MS.gene29777:intron |
| TATTCGAGATTACATGTTTG+AGG | 0.432361 | 3.4:+38104472 | MS.gene29777:CDS |
| TTGAGCTTGCTCCTGAATCC+TGG | 0.437539 | 3.4:-38104742 | None:intergenic |
| CAAATGGATGTTTGCACTGA+GGG | 0.472683 | 3.4:-38103753 | None:intergenic |
| TGTAACATGCATCCTTCATT+GGG | 0.475726 | 3.4:+38103705 | MS.gene29777:CDS |
| TGGAAGCTTGGTCGATGGAC+CGG | 0.493607 | 3.4:-38104722 | None:intergenic |
| GCTCCTGAATCCTGGAAGCT+TGG | 0.500612 | 3.4:-38104734 | None:intergenic |
| TGAAAATGGGAGCGAAGAAG+AGG | 0.505082 | 3.4:+38102415 | MS.gene29777:CDS |
| TGAACGGTTAGGAACTCAAA+TGG | 0.509517 | 3.4:-38103769 | None:intergenic |
| ACGGATTGGCAACCGTAGAT+GGG | 0.509792 | 3.4:+38104658 | MS.gene29777:CDS |
| ACCATTGAGCCCGAAGTAGT+AGG | 0.530376 | 3.4:-38104505 | None:intergenic |
| TGGATGTTTGCACTGAGGGC+AGG | 0.533700 | 3.4:-38103749 | None:intergenic |
| AACCGTTGTCTCCCCATCTA+CGG | 0.538803 | 3.4:-38104670 | None:intergenic |
| TGGGCGTCAAGAAGCTCGGC+CGG | 0.547872 | 3.4:+38104703 | MS.gene29777:CDS |
| TTGTTATGTAGATTGAAAAT+GGG | 0.548389 | 3.4:+38102402 | None:intergenic |
| GACTGTATGTCGCCCAATGA+AGG | 0.552276 | 3.4:-38103717 | None:intergenic |
| CATGTTGGATTTGGAAAACA+TGG | 0.554242 | 3.4:+38102446 | MS.gene29777:CDS |
| ATGGTGGTTCAGCTAGTGTA+CGG | 0.555093 | 3.4:+38104639 | MS.gene29777:CDS |
| CAAGTGTGCGATGAACGGTT+AGG | 0.562483 | 3.4:-38103780 | None:intergenic |
| AATCCTGGAAGCTTGGTCGA+TGG | 0.566441 | 3.4:-38104727 | None:intergenic |
| TCCATCAAGTGTGCGATGAA+CGG | 0.566517 | 3.4:-38103785 | None:intergenic |
| GGGCTGGGCGTCAAGAAGCT+CGG | 0.568106 | 3.4:+38104699 | MS.gene29777:CDS |
| GAAGAGGAGAATCATCATGT+TGG | 0.571812 | 3.4:+38102431 | MS.gene29777:CDS |
| GATGATGAGGATTATTATGG+TGG | 0.579507 | 3.4:+38104623 | MS.gene29777:CDS |
| TGACGATGATCTAGATGATG+AGG | 0.597527 | 3.4:+38104610 | MS.gene29777:CDS |
| CGGATTGGCAACCGTAGATG+GGG | 0.602083 | 3.4:+38104659 | MS.gene29777:CDS |
| GGTTCAGCTAGTGTACGGAT+TGG | 0.606059 | 3.4:+38104644 | MS.gene29777:CDS |
| TTCATCGCACACTTGATGGA+AGG | 0.629564 | 3.4:+38103788 | MS.gene29777:CDS |
| AACCGTAGATGGGGAGACAA+CGG | 0.640663 | 3.4:+38104668 | MS.gene29777:CDS |
| TTTAACTGTTGAAGAGCGTG+TGG | 0.656356 | 3.4:+38104535 | MS.gene29777:CDS |
| GTTGGATTTGGAAAACATGG+TGG | 0.694300 | 3.4:+38102449 | MS.gene29777:CDS |
| TCAAATGGATGTTTGCACTG+AGG | 0.708375 | 3.4:-38103754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATTTAAATTATTGAAT+TGG | - | chr3.4:38104112-38104131 | None:intergenic | 10.0% |
| !!! | AATAATTTAAATTTTCAGAT+TGG | + | chr3.4:38104116-38104135 | MS.gene29777:intron | 10.0% |
| !! | AAAATTTAATGAAACAACAA+TGG | - | chr3.4:38103889-38103908 | None:intergenic | 15.0% |
| !! | ACTAATACAAAGAATTATAA+TGG | + | chr3.4:38102661-38102680 | MS.gene29777:intron | 15.0% |
| !! | CATAAATGTATTATATCATT+TGG | + | chr3.4:38103394-38103413 | MS.gene29777:intron | 15.0% |
| !! | GTATAGTATATAATAAATTC+AGG | - | chr3.4:38103235-38103254 | None:intergenic | 15.0% |
| !!! | ATAAATTGTAACTGTTTTAT+GGG | + | chr3.4:38103483-38103502 | MS.gene29777:intron | 15.0% |
| !!! | ATGTTTTAACTGAAAAAAAT+TGG | + | chr3.4:38102781-38102800 | MS.gene29777:intron | 15.0% |
| !!! | TATAAATTGTAACTGTTTTA+TGG | + | chr3.4:38103482-38103501 | MS.gene29777:intron | 15.0% |
| !!! | TGTTTTAACTGAAAAAAATT+GGG | + | chr3.4:38102782-38102801 | MS.gene29777:intron | 15.0% |
| !! | AACGTATAATGTTGTATAAT+AGG | - | chr3.4:38104339-38104358 | None:intergenic | 20.0% |
| !! | ACGTATAATGTTGTATAATA+GGG | - | chr3.4:38104338-38104357 | None:intergenic | 20.0% |
| !! | ATAATTCTTTGTATTAGTTG+TGG | - | chr3.4:38102659-38102678 | None:intergenic | 20.0% |
| !! | TGATCTTACTTTATTAGTTA+AGG | + | chr3.4:38103157-38103176 | MS.gene29777:intron | 20.0% |
| !! | TTATATCATTTGGCTAATTA+AGG | + | chr3.4:38103404-38103423 | MS.gene29777:intron | 20.0% |
| !!! | AAAATATGTTTTTCAAAAGC+AGG | - | chr3.4:38103116-38103135 | None:intergenic | 20.0% |
| !!! | ACGAACTAATAATTTTCATT+TGG | - | chr3.4:38102626-38102645 | None:intergenic | 20.0% |
| !!! | CTTTTTGAATATTAAGTGTA+TGG | + | chr3.4:38102578-38102597 | MS.gene29777:intron | 20.0% |
| !!! | GGTAATATCACTTTTTATTT+TGG | + | chr3.4:38103809-38103828 | MS.gene29777:intron | 20.0% |
| !!! | GTTTGAAATTAGATTATGTT+GGG | + | chr3.4:38104070-38104089 | MS.gene29777:intron | 20.0% |
| !!! | TGTTTGAAATTAGATTATGT+TGG | + | chr3.4:38104069-38104088 | MS.gene29777:intron | 20.0% |
| !!! | TTATAATGGATAAGATTGAA+TGG | + | chr3.4:38102675-38102694 | MS.gene29777:intron | 20.0% |
| ! | AATCCTTAATTCAGAAAAAG+TGG | + | chr3.4:38104407-38104426 | MS.gene29777:intron | 25.0% |
| ! | AGTAGAAATTTCAATAGTAC+CGG | + | chr3.4:38103434-38103453 | MS.gene29777:intron | 25.0% |
| ! | ATAATGACTATTCATAAGAG+AGG | + | chr3.4:38102822-38102841 | MS.gene29777:intron | 25.0% |
| ! | ATTTCATTATGGATACATGA+TGG | + | chr3.4:38103975-38103994 | MS.gene29777:intron | 25.0% |
| ! | CAGTTACAATTTATATAGCA+TGG | - | chr3.4:38103477-38103496 | None:intergenic | 25.0% |
| ! | CTTACTTTATTAGTTAAGGA+AGG | + | chr3.4:38103161-38103180 | MS.gene29777:intron | 25.0% |
| ! | GAATCTAGAGATTAATGAAT+TGG | + | chr3.4:38103276-38103295 | MS.gene29777:intron | 25.0% |
| ! | GATGGACATAAACTTTATAT+TGG | + | chr3.4:38103997-38104016 | MS.gene29777:intron | 25.0% |
| ! | TAAAGTAAGATCAAAAGCAA+TGG | - | chr3.4:38103150-38103169 | None:intergenic | 25.0% |
| ! | TACATCAAGAATTTATGGTT+GGG | + | chr3.4:38103017-38103036 | MS.gene29777:intron | 25.0% |
| ! | TTCTTAAACTAGAATGTTTC+TGG | + | chr3.4:38103586-38103605 | MS.gene29777:intron | 25.0% |
| ! | TTTATATAGCATGGAATCAA+AGG | - | chr3.4:38103468-38103487 | None:intergenic | 25.0% |
| ! | TTTATGGGCAAAAAAATTCA+GGG | + | chr3.4:38103498-38103517 | MS.gene29777:intron | 25.0% |
| ! | TTTGCTACATCAAGAATTTA+TGG | + | chr3.4:38103012-38103031 | MS.gene29777:intron | 25.0% |
| !! | ATTGAATTGGTAACAAAGTA+CGG | - | chr3.4:38104099-38104118 | None:intergenic | 25.0% |
| !! | TAATTATTCAGAGTACTCTT+GGG | - | chr3.4:38104150-38104169 | None:intergenic | 25.0% |
| !! | TTTTATGGGCAAAAAAATTC+AGG | + | chr3.4:38103497-38103516 | MS.gene29777:intron | 25.0% |
| !!! | GAACTTTTTTACTAGAAAGT+CGG | + | chr3.4:38104279-38104298 | MS.gene29777:intron | 25.0% |
| !!! | GAGTCTGTATTTGTTTTTAA+TGG | + | chr3.4:38103661-38103680 | MS.gene29777:intron | 25.0% |
| !!! | TCTTTCTTTTTTCTCATGTT+AGG | + | chr3.4:38102853-38102872 | MS.gene29777:intron | 25.0% |
| !!! | TGAAGTTTTGTAAGTTTTGT+AGG | + | chr3.4:38102877-38102896 | MS.gene29777:intron | 25.0% |
| AAAGTTCATGTTTGATGAGA+TGG | - | chr3.4:38104266-38104285 | None:intergenic | 30.0% | |
| AACTCTTTGTAATTGAAGCT+TGG | + | chr3.4:38102727-38102746 | MS.gene29777:intron | 30.0% | |
| ACATCAAGAATTTATGGTTG+GGG | + | chr3.4:38103018-38103037 | MS.gene29777:intron | 30.0% | |
| ATAATGAAATCCTATAGCCA+CGG | - | chr3.4:38103965-38103984 | None:intergenic | 30.0% | |
| CTACATCAAGAATTTATGGT+TGG | + | chr3.4:38103016-38103035 | MS.gene29777:intron | 30.0% | |
| CTAGATGATGAGGATTATTA+TGG | + | chr3.4:38104620-38104639 | MS.gene29777:CDS | 30.0% | |
| GCAAATGTTAAAAATGAGCT+TGG | - | chr3.4:38102753-38102772 | None:intergenic | 30.0% | |
| TATAGCTGAATTCCTTGTAA+AGG | + | chr3.4:38103933-38103952 | MS.gene29777:intron | 30.0% | |
| TATTCGAGATTACATGTTTG+AGG | + | chr3.4:38104472-38104491 | MS.gene29777:CDS | 30.0% | |
| TCATTAACCAGATATAGATC+AGG | - | chr3.4:38104028-38104047 | None:intergenic | 30.0% | |
| TCTGATAAAATTGGTGTGAT+AGG | + | chr3.4:38103523-38103542 | MS.gene29777:intron | 30.0% | |
| TGAACTGTGAACATAATTGA+AGG | - | chr3.4:38104232-38104251 | None:intergenic | 30.0% | |
| ! | CTAATTATTCAGAGTACTCT+TGG | - | chr3.4:38104151-38104170 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr3.4:38103308-38103327 | MS.gene29777:intron | 30.0% |
| !! | GTTTTGATGTGATATATGTC+AGG | + | chr3.4:38102951-38102970 | MS.gene29777:intron | 30.0% |
| !!! | CAACCACTTTTTCTGAATTA+AGG | - | chr3.4:38104413-38104432 | None:intergenic | 30.0% |
| AATTTATGGTTGGGGCATAT+AGG | + | chr3.4:38103026-38103045 | MS.gene29777:intron | 35.0% | |
| CAAGAAACTGCTCTTGTTAA+AGG | + | chr3.4:38102506-38102525 | MS.gene29777:CDS | 35.0% | |
| CATGTTGGATTTGGAAAACA+TGG | + | chr3.4:38102446-38102465 | MS.gene29777:CDS | 35.0% | |
| GAGAATCATCATGTTGGATT+TGG | + | chr3.4:38102437-38102456 | MS.gene29777:CDS | 35.0% | |
| GATGATGAGGATTATTATGG+TGG | + | chr3.4:38104623-38104642 | MS.gene29777:CDS | 35.0% | |
| GGAAATACCTGATCTATATC+TGG | + | chr3.4:38104018-38104037 | MS.gene29777:intron | 35.0% | |
| GTGGCTATAGGATTTCATTA+TGG | + | chr3.4:38103964-38103983 | MS.gene29777:intron | 35.0% | |
| TAATGAATTGGAGACAGACA+TGG | + | chr3.4:38103288-38103307 | MS.gene29777:intron | 35.0% | |
| TGCATGTTACACTACACAAA+AGG | - | chr3.4:38103696-38103715 | None:intergenic | 35.0% | |
| TGTAACATGCATCCTTCATT+GGG | + | chr3.4:38103705-38103724 | MS.gene29777:CDS | 35.0% | |
| ! | AAAGTGTTTGCCTACTACTT+CGG | + | chr3.4:38104495-38104514 | MS.gene29777:CDS | 35.0% |
| ! | CATTATGGATACATGATGGA+TGG | + | chr3.4:38103979-38103998 | MS.gene29777:intron | 35.0% |
| ! | TTCAGGGCATCTGATAAAAT+TGG | + | chr3.4:38103514-38103533 | MS.gene29777:intron | 35.0% |
| !! | AGTTGACCTGGTTTGTATTT+TGG | + | chr3.4:38103085-38103104 | MS.gene29777:intron | 35.0% |
| AAGTGTTTGCCTACTACTTC+GGG | + | chr3.4:38104496-38104515 | MS.gene29777:CDS | 40.0% | |
| ACACGCTCTTCAACAGTTAA+AGG | - | chr3.4:38104536-38104555 | None:intergenic | 40.0% | |
| CAAATGGATGTTTGCACTGA+GGG | - | chr3.4:38103756-38103775 | None:intergenic | 40.0% | |
| CCTCACTATCACATTTCAGA+CGG | + | chr3.4:38103186-38103205 | MS.gene29777:intron | 40.0% | |
| GAAGAGGAGAATCATCATGT+TGG | + | chr3.4:38102431-38102450 | MS.gene29777:CDS | 40.0% | |
| GCAGAACCAAAATACAAACC+AGG | - | chr3.4:38103094-38103113 | None:intergenic | 40.0% | |
| GGAATCAAAGGCAGAATATC+CGG | - | chr3.4:38103456-38103475 | None:intergenic | 40.0% | |
| GGGCATATAGGTCATGATAA+GGG | + | chr3.4:38103038-38103057 | MS.gene29777:intron | 40.0% | |
| GTGTAACATGCATCCTTCAT+TGG | + | chr3.4:38103704-38103723 | MS.gene29777:intron | 40.0% | |
| GTTGGATTTGGAAAACATGG+TGG | + | chr3.4:38102449-38102468 | MS.gene29777:CDS | 40.0% | |
| TCAAATGGATGTTTGCACTG+AGG | - | chr3.4:38103757-38103776 | None:intergenic | 40.0% | |
| TCAGACGGAATTTGCATGAT+TGG | + | chr3.4:38103201-38103220 | MS.gene29777:intron | 40.0% | |
| TGAACGGTTAGGAACTCAAA+TGG | - | chr3.4:38103772-38103791 | None:intergenic | 40.0% | |
| TGACGATGATCTAGATGATG+AGG | + | chr3.4:38104610-38104629 | MS.gene29777:CDS | 40.0% | |
| ! | TTTAACTGTTGAAGAGCGTG+TGG | + | chr3.4:38104535-38104554 | MS.gene29777:CDS | 40.0% |
| !! | ATGACTCTATCAAGTTGACC+TGG | + | chr3.4:38103073-38103092 | MS.gene29777:intron | 40.0% |
| ATGGTGGTTCAGCTAGTGTA+CGG | + | chr3.4:38104639-38104658 | MS.gene29777:CDS | 45.0% | |
| CTTATCCCACTAAGTGGTGT+CGG | - | chr3.4:38103353-38103372 | None:intergenic | 45.0% | |
| GGGGCATATAGGTCATGATA+AGG | + | chr3.4:38103037-38103056 | MS.gene29777:intron | 45.0% | |
| TCCATCAAGTGTGCGATGAA+CGG | - | chr3.4:38103788-38103807 | None:intergenic | 45.0% | |
| TGAAAATGGGAGCGAAGAAG+AGG | + | chr3.4:38102415-38102434 | MS.gene29777:CDS | 45.0% | |
| TTCATCGCACACTTGATGGA+AGG | + | chr3.4:38103788-38103807 | MS.gene29777:CDS | 45.0% | |
| ! | ATTCAGAGTACTCTTGGGAG+TGG | - | chr3.4:38104145-38104164 | None:intergenic | 45.0% |
| ! | CCGTCTGAAATGTGATAGTG+AGG | - | chr3.4:38103189-38103208 | None:intergenic | 45.0% |
| !! | ACAACGGTTTTGTAAGGGCT+GGG | + | chr3.4:38104684-38104703 | MS.gene29777:CDS | 45.0% |
| !! | GGGAGACAACGGTTTTGTAA+GGG | + | chr3.4:38104679-38104698 | MS.gene29777:CDS | 45.0% |
| AACCGTAGATGGGGAGACAA+CGG | + | chr3.4:38104668-38104687 | MS.gene29777:CDS | 50.0% | |
| AACCGTTGTCTCCCCATCTA+CGG | - | chr3.4:38104673-38104692 | None:intergenic | 50.0% | |
| AAGGTTGCGAGCATGCTTAC+TGG | + | chr3.4:38102525-38102544 | MS.gene29777:CDS | 50.0% | |
| AAGGTTGTCACCGTGGCTAT+AGG | + | chr3.4:38103952-38103971 | MS.gene29777:intron | 50.0% | |
| AATCCTGGAAGCTTGGTCGA+TGG | - | chr3.4:38104730-38104749 | None:intergenic | 50.0% | |
| ACCATTGAGCCCGAAGTAGT+AGG | - | chr3.4:38104508-38104527 | None:intergenic | 50.0% | |
| ACCGTTCATCGCACACTTGA+TGG | + | chr3.4:38103784-38103803 | MS.gene29777:CDS | 50.0% | |
| ATGTAGCCGACACCACTTAG+TGG | + | chr3.4:38103344-38103363 | MS.gene29777:intron | 50.0% | |
| CAAGTGTGCGATGAACGGTT+AGG | - | chr3.4:38103783-38103802 | None:intergenic | 50.0% | |
| CCACGGTGACAACCTTTACA+AGG | - | chr3.4:38103948-38103967 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3.4:38103356-38103375 | MS.gene29777:intron | 50.0% | |
| CCTTGTAAAGGTTGTCACCG+TGG | + | chr3.4:38103945-38103964 | MS.gene29777:intron | 50.0% | |
| CGACACCACTTAGTGGGATA+AGG | + | chr3.4:38103351-38103370 | MS.gene29777:intron | 50.0% | |
| GACTGTATGTCGCCCAATGA+AGG | - | chr3.4:38103720-38103739 | None:intergenic | 50.0% | |
| GGTTCAGCTAGTGTACGGAT+TGG | + | chr3.4:38104644-38104663 | MS.gene29777:CDS | 50.0% | |
| TGTAGCCGACACCACTTAGT+GGG | + | chr3.4:38103345-38103364 | MS.gene29777:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3.4:38103359-38103378 | None:intergenic | 50.0% |
| ! | TTGAGCTTGCTCCTGAATCC+TGG | - | chr3.4:38104745-38104764 | None:intergenic | 50.0% |
| !! | ACGGATTGGCAACCGTAGAT+GGG | + | chr3.4:38104658-38104677 | MS.gene29777:CDS | 50.0% |
| !! | GACAACGGTTTTGTAAGGGC+TGG | + | chr3.4:38104683-38104702 | MS.gene29777:CDS | 50.0% |
| !! | GGGGAGACAACGGTTTTGTA+AGG | + | chr3.4:38104678-38104697 | MS.gene29777:CDS | 50.0% |
| !! | TACGGATTGGCAACCGTAGA+TGG | + | chr3.4:38104657-38104676 | MS.gene29777:CDS | 50.0% |
| CGACCAAGCTTCCAGGATTC+AGG | + | chr3.4:38104731-38104750 | MS.gene29777:CDS | 55.0% | |
| GCCTACTACTTCGGGCTCAA+TGG | + | chr3.4:38104504-38104523 | MS.gene29777:CDS | 55.0% | |
| GCTCCTGAATCCTGGAAGCT+TGG | - | chr3.4:38104737-38104756 | None:intergenic | 55.0% | |
| TGGAAGCTTGGTCGATGGAC+CGG | - | chr3.4:38104725-38104744 | None:intergenic | 55.0% | |
| TGGATGTTTGCACTGAGGGC+AGG | - | chr3.4:38103752-38103771 | None:intergenic | 55.0% | |
| !! | CGGATTGGCAACCGTAGATG+GGG | + | chr3.4:38104659-38104678 | MS.gene29777:CDS | 55.0% |
| GGTCCATCGACCAAGCTTCC+AGG | + | chr3.4:38104724-38104743 | MS.gene29777:CDS | 60.0% | |
| GGGCTGGGCGTCAAGAAGCT+CGG | + | chr3.4:38104699-38104718 | MS.gene29777:CDS | 65.0% | |
| TGGGCGTCAAGAAGCTCGGC+CGG | + | chr3.4:38104703-38104722 | MS.gene29777:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 38102413 | 38104764 | 38102413 | ID=MS.gene29777 |
| chr3.4 | mRNA | 38102413 | 38104764 | 38102413 | ID=MS.gene29777.t1;Parent=MS.gene29777 |
| chr3.4 | exon | 38102413 | 38102546 | 38102413 | ID=MS.gene29777.t1.exon1;Parent=MS.gene29777.t1 |
| chr3.4 | CDS | 38102413 | 38102546 | 38102413 | ID=cds.MS.gene29777.t1;Parent=MS.gene29777.t1 |
| chr3.4 | exon | 38103705 | 38103809 | 38103705 | ID=MS.gene29777.t1.exon2;Parent=MS.gene29777.t1 |
| chr3.4 | CDS | 38103705 | 38103809 | 38103705 | ID=cds.MS.gene29777.t1;Parent=MS.gene29777.t1 |
| chr3.4 | exon | 38104472 | 38104764 | 38104472 | ID=MS.gene29777.t1.exon3;Parent=MS.gene29777.t1 |
| chr3.4 | CDS | 38104472 | 38104764 | 38104472 | ID=cds.MS.gene29777.t1;Parent=MS.gene29777.t1 |
| Gene Sequence |
| Protein sequence |
