Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29875.t1 | AES70102.1 | 82.4 | 433 | 33 | 4 | 2 | 434 | 3 | 392 | 4.10E-188 | 667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29875.t1 | Q9S7T8 | 52.9 | 384 | 174 | 5 | 55 | 432 | 8 | 390 | 2.9e-110 | 400.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29875.t1 | G7IXX4 | 82.4 | 433 | 33 | 4 | 2 | 434 | 3 | 392 | 2.9e-188 | 667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29875 | MS.gene031697 | PPI |
| MS.gene29875 | MS.gene006610 | PPI |
| MS.gene29875 | MS.gene045585 | PPI |
| MS.gene29875 | MS.gene065944 | PPI |
| MS.gene29875 | MS.gene065945 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29875.t1 | MTR_3g048000 | 82.448 | 433 | 33 | 4 | 2 | 434 | 3 | 392 | 0.0 | 694 |
| MS.gene29875.t1 | MTR_4g045707 | 70.899 | 378 | 108 | 2 | 56 | 432 | 10 | 386 | 0.0 | 548 |
| MS.gene29875.t1 | MTR_3g101010 | 70.725 | 386 | 109 | 2 | 50 | 432 | 3 | 387 | 0.0 | 535 |
| MS.gene29875.t1 | MTR_8g027395 | 66.752 | 391 | 124 | 3 | 45 | 433 | 10 | 396 | 0.0 | 522 |
| MS.gene29875.t1 | MTR_3g018740 | 67.010 | 388 | 125 | 3 | 49 | 434 | 2 | 388 | 0.0 | 521 |
| MS.gene29875.t1 | MTR_3g101030 | 60.798 | 426 | 141 | 8 | 29 | 433 | 8 | 428 | 1.83e-174 | 495 |
| MS.gene29875.t1 | MTR_4g088525 | 65.014 | 363 | 125 | 2 | 71 | 433 | 8 | 368 | 5.08e-171 | 484 |
| MS.gene29875.t1 | MTR_8g461160 | 64.156 | 385 | 130 | 3 | 55 | 432 | 9 | 392 | 1.02e-169 | 481 |
| MS.gene29875.t1 | MTR_2g045980 | 62.916 | 391 | 136 | 4 | 49 | 434 | 2 | 388 | 2.16e-167 | 475 |
| MS.gene29875.t1 | MTR_2g046030 | 61.637 | 391 | 141 | 4 | 49 | 434 | 2 | 388 | 3.24e-167 | 475 |
| MS.gene29875.t1 | MTR_8g027420 | 62.176 | 386 | 133 | 3 | 48 | 433 | 2 | 374 | 2.29e-165 | 470 |
| MS.gene29875.t1 | MTR_7g451890 | 60.256 | 390 | 147 | 3 | 50 | 432 | 12 | 400 | 2.42e-165 | 471 |
| MS.gene29875.t1 | MTR_4g088535 | 62.368 | 380 | 125 | 4 | 54 | 433 | 9 | 370 | 1.69e-163 | 465 |
| MS.gene29875.t1 | MTR_7g047780 | 60.459 | 392 | 143 | 4 | 50 | 432 | 12 | 400 | 2.40e-162 | 463 |
| MS.gene29875.t1 | MTR_3g101180 | 60.253 | 395 | 139 | 5 | 55 | 434 | 9 | 400 | 6.04e-162 | 462 |
| MS.gene29875.t1 | MTR_7g050810 | 60.769 | 390 | 145 | 3 | 50 | 432 | 14 | 402 | 2.00e-161 | 461 |
| MS.gene29875.t1 | MTR_7g050750 | 60.204 | 392 | 144 | 4 | 50 | 432 | 6 | 394 | 2.37e-161 | 460 |
| MS.gene29875.t1 | MTR_3g101130 | 60.914 | 394 | 138 | 6 | 49 | 433 | 2 | 388 | 2.48e-159 | 455 |
| MS.gene29875.t1 | MTR_3g101050 | 62.500 | 384 | 121 | 6 | 54 | 432 | 31 | 396 | 9.90e-152 | 436 |
| MS.gene29875.t1 | MTR_3g102920 | 58.373 | 418 | 117 | 10 | 23 | 433 | 42 | 409 | 1.25e-146 | 424 |
| MS.gene29875.t1 | MTR_3g015620 | 60.260 | 385 | 121 | 5 | 55 | 432 | 19 | 378 | 3.71e-145 | 419 |
| MS.gene29875.t1 | MTR_3g101200 | 52.658 | 395 | 146 | 7 | 50 | 434 | 29 | 392 | 3.93e-125 | 368 |
| MS.gene29875.t1 | MTR_3g100995 | 66.275 | 255 | 81 | 3 | 180 | 432 | 11 | 262 | 6.60e-119 | 347 |
| MS.gene29875.t1 | MTR_3g101190 | 51.344 | 372 | 120 | 6 | 62 | 433 | 1 | 311 | 1.03e-118 | 349 |
| MS.gene29875.t1 | MTR_3g018747 | 64.122 | 262 | 76 | 4 | 176 | 434 | 9 | 255 | 4.07e-111 | 327 |
| MS.gene29875.t1 | MTR_7g050830 | 52.836 | 335 | 120 | 5 | 33 | 345 | 1 | 319 | 3.61e-110 | 328 |
| MS.gene29875.t1 | MTR_3g100010 | 55.949 | 311 | 88 | 3 | 77 | 354 | 42 | 336 | 5.64e-110 | 328 |
| MS.gene29875.t1 | MTR_3g015760 | 60.870 | 276 | 100 | 4 | 161 | 432 | 8 | 279 | 7.74e-102 | 305 |
| MS.gene29875.t1 | MTR_3g111160 | 66.364 | 220 | 68 | 5 | 217 | 432 | 1 | 218 | 1.23e-91 | 276 |
| MS.gene29875.t1 | MTR_3g099970 | 67.513 | 197 | 46 | 2 | 176 | 372 | 20 | 198 | 2.06e-88 | 267 |
| MS.gene29875.t1 | MTR_3g100520 | 60.092 | 218 | 76 | 2 | 217 | 433 | 1 | 208 | 1.85e-87 | 265 |
| MS.gene29875.t1 | MTR_2g046410 | 63.285 | 207 | 70 | 3 | 233 | 434 | 144 | 349 | 1.01e-83 | 261 |
| MS.gene29875.t1 | MTR_3g101110 | 54.918 | 244 | 76 | 4 | 176 | 412 | 68 | 284 | 5.68e-78 | 244 |
| MS.gene29875.t1 | MTR_3g114310 | 41.085 | 387 | 211 | 10 | 58 | 431 | 25 | 407 | 1.47e-77 | 247 |
| MS.gene29875.t1 | MTR_3g102870 | 65.132 | 152 | 52 | 1 | 241 | 392 | 3 | 153 | 1.37e-62 | 200 |
| MS.gene29875.t1 | MTR_3g101020 | 56.216 | 185 | 52 | 3 | 250 | 432 | 1 | 158 | 1.89e-59 | 191 |
| MS.gene29875.t1 | MTR_3g111150 | 56.818 | 176 | 52 | 2 | 55 | 230 | 2 | 153 | 2.55e-59 | 191 |
| MS.gene29875.t1 | MTR_3g101150 | 62.963 | 162 | 46 | 4 | 282 | 433 | 1 | 158 | 6.01e-58 | 187 |
| MS.gene29875.t1 | MTR_3g100990 | 63.359 | 131 | 47 | 1 | 51 | 180 | 3 | 133 | 1.24e-46 | 168 |
| MS.gene29875.t1 | MTR_4g093550 | 62.500 | 88 | 33 | 0 | 48 | 135 | 2 | 89 | 1.34e-29 | 110 |
| MS.gene29875.t1 | MTR_6g046890 | 58.333 | 84 | 30 | 1 | 60 | 138 | 7 | 90 | 1.82e-21 | 90.5 |
| MS.gene29875.t1 | MTR_3g101140 | 58.974 | 78 | 24 | 2 | 361 | 432 | 39 | 114 | 9.88e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29875.t1 | AT1G47710 | 52.880 | 382 | 173 | 5 | 57 | 432 | 10 | 390 | 3.83e-141 | 409 |
| MS.gene29875.t1 | AT1G47710 | 52.880 | 382 | 173 | 5 | 57 | 432 | 37 | 417 | 1.27e-140 | 409 |
| MS.gene29875.t1 | AT3G45220 | 47.462 | 394 | 189 | 7 | 50 | 431 | 3 | 390 | 8.95e-122 | 360 |
| MS.gene29875.t1 | AT2G25240 | 48.837 | 387 | 186 | 7 | 50 | 431 | 3 | 382 | 2.73e-121 | 358 |
| MS.gene29875.t1 | AT2G26390 | 47.595 | 395 | 183 | 8 | 50 | 431 | 3 | 386 | 1.78e-116 | 346 |
| MS.gene29875.t1 | AT1G62170 | 38.849 | 417 | 211 | 7 | 35 | 431 | 39 | 431 | 7.71e-95 | 292 |
| MS.gene29875.t1 | AT2G14540 | 43.035 | 402 | 197 | 8 | 39 | 431 | 19 | 397 | 5.18e-94 | 289 |
| MS.gene29875.t1 | AT1G64030 | 42.377 | 387 | 188 | 8 | 56 | 431 | 9 | 371 | 4.89e-93 | 286 |
| MS.gene29875.t1 | AT1G62170 | 36.000 | 450 | 211 | 8 | 35 | 431 | 39 | 464 | 1.23e-87 | 275 |
| MS.gene29875.t1 | AT2G35580 | 42.276 | 369 | 179 | 9 | 75 | 431 | 25 | 371 | 7.54e-87 | 270 |
| MS.gene29875.t1 | AT1G64010 | 46.789 | 218 | 90 | 6 | 217 | 431 | 1 | 195 | 1.20e-58 | 191 |
| MS.gene29875.t1 | AT1G64010 | 46.798 | 203 | 82 | 6 | 232 | 431 | 2 | 181 | 1.18e-51 | 172 |
| MS.gene29875.t1 | AT1G63280 | 54.783 | 115 | 48 | 2 | 176 | 288 | 8 | 120 | 1.76e-34 | 125 |
| MS.gene29875.t1 | AT1G62160 | 39.444 | 180 | 86 | 5 | 254 | 431 | 60 | 218 | 1.10e-29 | 115 |
| MS.gene29875.t1 | AT1G51330 | 49.550 | 111 | 53 | 2 | 175 | 282 | 30 | 140 | 2.76e-26 | 105 |
| MS.gene29875.t1 | AT1G64020 | 34.821 | 112 | 70 | 3 | 57 | 166 | 10 | 120 | 1.54e-12 | 64.7 |
Find 92 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTTTACTTTAA+AGG | 0.147405 | 3.3:+38443950 | MS.gene29875:CDS |
| CCTCGCCTCTCATTCGTTAA+TGG | 0.176553 | 3.3:+38443206 | MS.gene29875:CDS |
| CTGAAATTGCCTACTCTCTT+TGG | 0.223598 | 3.3:-38444256 | None:intergenic |
| TGACAAATGATGTGAATTTA+TGG | 0.237697 | 3.3:+38443849 | MS.gene29875:CDS |
| CCAAGGTTCAATGTTTCATT+TGG | 0.241843 | 3.3:+38444283 | MS.gene29875:CDS |
| CTAATGCACTTTACTTTAAA+GGG | 0.259928 | 3.3:+38443951 | MS.gene29875:CDS |
| TGTGAATTTATGGGCTAAAA+AGG | 0.283191 | 3.3:+38443859 | MS.gene29875:CDS |
| TTATCTTCACCTTGTCTATA+AGG | 0.297702 | 3.3:-38444118 | None:intergenic |
| GAGAAAGACGCTGAAGGTTT+TGG | 0.306329 | 3.3:-38444234 | None:intergenic |
| GACAGTCCATCTCTTGCATT+TGG | 0.351909 | 3.3:-38444169 | None:intergenic |
| CAAGGTTCAATGTTTCATTT+GGG | 0.365934 | 3.3:+38444284 | MS.gene29875:CDS |
| ACCGAAACAATCCTCTTTGT+AGG | 0.398391 | 3.3:+38444565 | MS.gene29875:CDS |
| GGAAGGAGAGTTTAAGAGAA+AGG | 0.409814 | 3.3:-38443247 | None:intergenic |
| CACTTTACTTTAAAGGGGTG+TGG | 0.412013 | 3.3:+38443957 | MS.gene29875:CDS |
| TGTGGAGGGAAGAGTCTGTT+TGG | 0.415511 | 3.3:-38442932 | None:intergenic |
| GCAGTCACTGCTGATGTATT+CGG | 0.417474 | 3.3:+38444469 | MS.gene29875:CDS |
| TTATCTGATGCCGCTCCTGC+TGG | 0.419517 | 3.3:+38443179 | MS.gene29875:CDS |
| GGATCAACAGTTTGATGCTT+CGG | 0.422585 | 3.3:+38443979 | MS.gene29875:CDS |
| AATCATTAGACACAATTTGT+TGG | 0.426957 | 3.3:-38443268 | None:intergenic |
| TCTCATTCGTTAATGGTTTG+TGG | 0.431354 | 3.3:+38443213 | MS.gene29875:CDS |
| TTTGGTTGCTGCTTGGTTTG+TGG | 0.431730 | 3.3:-38442950 | None:intergenic |
| CCCTACAAAGAGGATTGTTT+CGG | 0.434714 | 3.3:-38444566 | None:intergenic |
| GAAATATGCGAGAAACAAAA+AGG | 0.436254 | 3.3:-38444402 | None:intergenic |
| TGCTGATGTATTCGGAATCA+AGG | 0.448188 | 3.3:+38444477 | MS.gene29875:CDS |
| AACAATCCTCTTTGTAGGGC+AGG | 0.449078 | 3.3:+38444570 | MS.gene29875:CDS |
| GTGCTCAGCCTTATCGCTGC+TGG | 0.456998 | 3.3:+38443059 | MS.gene29875:CDS |
| GAGTTTCGTTAAGTTGTTGA+CGG | 0.459214 | 3.3:-38443921 | None:intergenic |
| GAAGGAGAGTTTAAGAGAAA+GGG | 0.463552 | 3.3:-38443246 | None:intergenic |
| GTCAAACCTCCGGGAGAGAA+AGG | 0.470864 | 3.3:-38444349 | None:intergenic |
| TCAATTCTTCTTCTTCGTGA+TGG | 0.473596 | 3.3:-38442816 | None:intergenic |
| TGAAACTTCTGACATGTTGA+AGG | 0.473862 | 3.3:+38444309 | MS.gene29875:CDS |
| GTTGAGATGATTGGTAGATT+CGG | 0.477494 | 3.3:-38443126 | None:intergenic |
| AGAGTCTGTTTGGTTGGTAA+TGG | 0.479850 | 3.3:-38442922 | None:intergenic |
| CCTCAGATCCAGCAGCGATA+AGG | 0.485847 | 3.3:-38443067 | None:intergenic |
| GACAAATGATGTGAATTTAT+GGG | 0.490603 | 3.3:+38443850 | MS.gene29875:CDS |
| TAGATTCGGAGCGGAGGAAG+TGG | 0.490686 | 3.3:-38443112 | None:intergenic |
| ATCCTCCTTGCTAGTCATGA+AGG | 0.491144 | 3.3:-38444053 | None:intergenic |
| CCTTATCGCTGCTGGATCTG+AGG | 0.496476 | 3.3:+38443067 | MS.gene29875:CDS |
| GCGAGGACCACCAGCAGGAG+CGG | 0.496919 | 3.3:-38443189 | None:intergenic |
| TTGCTTTCTTCTGCAAGTAT+CGG | 0.499485 | 3.3:-38442842 | None:intergenic |
| TGTCGAGGGATACGTTGGTT+TGG | 0.505376 | 3.3:-38442968 | None:intergenic |
| ACTTTACTTTAAAGGGGTGT+GGG | 0.505826 | 3.3:+38443958 | MS.gene29875:CDS |
| CCGAAACAATCCTCTTTGTA+GGG | 0.513149 | 3.3:+38444566 | MS.gene29875:CDS |
| AATTGTGTCTAATGATTACA+AGG | 0.520426 | 3.3:+38443274 | MS.gene29875:CDS |
| ATTAGACACAATTTGTTGGA+AGG | 0.521440 | 3.3:-38443264 | None:intergenic |
| TTACTTCCAAATGCAAGAGA+TGG | 0.526780 | 3.3:+38444163 | MS.gene29875:CDS |
| GACAAAGGAGTTGAGATGAT+TGG | 0.531757 | 3.3:-38443135 | None:intergenic |
| TTCATCGAAGTAAATGAAGA+AGG | 0.535643 | 3.3:+38444433 | MS.gene29875:CDS |
| AGCAGGAGCGGCATCAGATA+AGG | 0.536189 | 3.3:-38443177 | None:intergenic |
| GAGGGAAGAGTCTGTTTGGT+TGG | 0.540259 | 3.3:-38442928 | None:intergenic |
| GAGAGGCGAGGACCACCAGC+AGG | 0.540888 | 3.3:-38443194 | None:intergenic |
| CTTATCGCTGCTGGATCTGA+GGG | 0.544160 | 3.3:+38443068 | MS.gene29875:CDS |
| AGAAAACACGATGTTATTGT+CGG | 0.545632 | 3.3:-38443018 | None:intergenic |
| GGTTGCTGCTTGGTTTGTGG+AGG | 0.547021 | 3.3:-38442947 | None:intergenic |
| ACGTTGGTTTGGTTGCTGCT+TGG | 0.547189 | 3.3:-38442957 | None:intergenic |
| TCTCTAATAAGAAATAAGAA+AGG | 0.548519 | 3.3:-38444535 | None:intergenic |
| GGAAAGGAGTTCAGCGACAA+AGG | 0.550156 | 3.3:-38443150 | None:intergenic |
| GGAGACAAATGGTCTTATTG+AGG | 0.551744 | 3.3:+38443880 | MS.gene29875:CDS |
| GAAAACACGATGTTATTGTC+GGG | 0.551955 | 3.3:-38443017 | None:intergenic |
| CCAAATGAAACATTGAACCT+TGG | 0.554304 | 3.3:-38444283 | None:intergenic |
| GTTGCTGCTTGGTTTGTGGA+GGG | 0.568542 | 3.3:-38442946 | None:intergenic |
| CTTCGTCTTCCTTATAGACA+AGG | 0.568961 | 3.3:+38444109 | MS.gene29875:CDS |
| GTCGGCTTTGATCGAGAAGG+TGG | 0.569953 | 3.3:+38444189 | MS.gene29875:CDS |
| GACGATGTCGAGGGATACGT+TGG | 0.571557 | 3.3:-38442973 | None:intergenic |
| TAATAAGAAATAAGAAAGGA+TGG | 0.579869 | 3.3:-38444531 | None:intergenic |
| TAGGCAATTTCAGAATTCCA+AGG | 0.584000 | 3.3:+38444266 | MS.gene29875:CDS |
| TAATGCACTTTACTTTAAAG+GGG | 0.587207 | 3.3:+38443952 | MS.gene29875:CDS |
| AGAGATGTTTGACGATGTCG+AGG | 0.589708 | 3.3:-38442983 | None:intergenic |
| TCTGACATGTTGAAGGAGCT+AGG | 0.592145 | 3.3:+38444316 | MS.gene29875:CDS |
| CAATAAGATCACTCAACAAG+AGG | 0.594177 | 3.3:-38444601 | None:intergenic |
| TCTGATGCCGCTCCTGCTGG+TGG | 0.597980 | 3.3:+38443182 | MS.gene29875:CDS |
| CGTCTTTCTCCAAAGAGAGT+AGG | 0.601617 | 3.3:+38444247 | MS.gene29875:CDS |
| GTGACTGATTCTTCTTCGTG+AGG | 0.607668 | 3.3:-38442900 | None:intergenic |
| GCTGATGTATTCGGAATCAA+GGG | 0.609390 | 3.3:+38444478 | MS.gene29875:CDS |
| TCCTCCTTGCTAGTCATGAA+GGG | 0.610394 | 3.3:-38444052 | None:intergenic |
| TGGAGAAGCTGTTGTTGTGT+CGG | 0.611680 | 3.3:-38443092 | None:intergenic |
| AGCGGCATCAGATAAGGTGA+TGG | 0.616583 | 3.3:-38443171 | None:intergenic |
| AGTTCCCTTCATGACTAGCA+AGG | 0.631217 | 3.3:+38444048 | MS.gene29875:CDS |
| CATCAGATAAGGTGATGGAA+AGG | 0.633699 | 3.3:-38443166 | None:intergenic |
| AGCACAACTTGTAGTGATAG+CGG | 0.639223 | 3.3:-38443041 | None:intergenic |
| TGAGAACCTGCCCTACAAAG+AGG | 0.639298 | 3.3:-38444576 | None:intergenic |
| TCTTTGGAGAAAGACGCTGA+AGG | 0.644989 | 3.3:-38444240 | None:intergenic |
| GATTGGTAGATTCGGAGCGG+AGG | 0.645973 | 3.3:-38443118 | None:intergenic |
| AAATGCAAGAGATGGACTGT+CGG | 0.648625 | 3.3:+38444171 | MS.gene29875:CDS |
| CATGTTGAAGGAGCTAGGAG+TGG | 0.649322 | 3.3:+38444321 | MS.gene29875:CDS |
| ACAAACCATTAACGAATGAG+AGG | 0.649379 | 3.3:-38443211 | None:intergenic |
| AAGTTGTTGACGGAGTCTGA+AGG | 0.676552 | 3.3:-38443911 | None:intergenic |
| GAGATGTTTGACGATGTCGA+GGG | 0.690251 | 3.3:-38442982 | None:intergenic |
| ACTGTCGGCTTTGATCGAGA+AGG | 0.690463 | 3.3:+38444186 | MS.gene29875:CDS |
| GATGATTGGTAGATTCGGAG+CGG | 0.699306 | 3.3:-38443121 | None:intergenic |
| CCATTAACGAATGAGAGGCG+AGG | 0.706862 | 3.3:-38443206 | None:intergenic |
| TCCCTTCATGACTAGCAAGG+AGG | 0.714857 | 3.3:+38444051 | MS.gene29875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTGATATTATTTTGT+AGG | + | chr3.3:38443817-38443836 | MS.gene29875:intron | 10.0% |
| !!! | CTTTTTAGAACTAAATTTTT+TGG | - | chr3.3:38443625-38443644 | None:intergenic | 15.0% |
| !!! | TTTTATTTCATAACCTAATT+TGG | + | chr3.3:38443411-38443430 | MS.gene29875:intron | 15.0% |
| !! | AAGTTGAATCTTATTGTTAA+AGG | - | chr3.3:38443665-38443684 | None:intergenic | 20.0% |
| !! | AATAAAAAAATTGTTTGTGC+AGG | - | chr3.3:38443393-38443412 | None:intergenic | 20.0% |
| !! | ATAATCTATGCAAATAGAAA+AGG | - | chr3.3:38443767-38443786 | None:intergenic | 20.0% |
| !! | TAATAAGAAATAAGAAAGGA+TGG | - | chr3.3:38444534-38444553 | None:intergenic | 20.0% |
| !! | TAGTTATGTATTGTAATGAA+AGG | + | chr3.3:38443362-38443381 | MS.gene29875:intron | 20.0% |
| !! | TCTCTAATAAGAAATAAGAA+AGG | - | chr3.3:38444538-38444557 | None:intergenic | 20.0% |
| !! | TTCATTACAATACATAACTA+GGG | - | chr3.3:38443362-38443381 | None:intergenic | 20.0% |
| !! | TTTCATTACAATACATAACT+AGG | - | chr3.3:38443363-38443382 | None:intergenic | 20.0% |
| !!! | TATGATTTTCACATTATGAA+TGG | + | chr3.3:38444013-38444032 | MS.gene29875:CDS | 20.0% |
| ! | AATCATTAGACACAATTTGT+TGG | - | chr3.3:38443271-38443290 | None:intergenic | 25.0% |
| ! | AATTGTGTCTAATGATTACA+AGG | + | chr3.3:38443274-38443293 | MS.gene29875:CDS | 25.0% |
| ! | ATTAAAGAATTCCATGTATG+TGG | + | chr3.3:38443529-38443548 | MS.gene29875:intron | 25.0% |
| ! | CTAATGCACTTTACTTTAAA+GGG | + | chr3.3:38443951-38443970 | MS.gene29875:CDS | 25.0% |
| ! | GACAAATGATGTGAATTTAT+GGG | + | chr3.3:38443850-38443869 | MS.gene29875:CDS | 25.0% |
| ! | TATTTCATAACCTAATTTGG+AGG | + | chr3.3:38443414-38443433 | MS.gene29875:intron | 25.0% |
| ! | TGACAAATGATGTGAATTTA+TGG | + | chr3.3:38443849-38443868 | MS.gene29875:CDS | 25.0% |
| !! | TAATGCACTTTACTTTAAAG+GGG | + | chr3.3:38443952-38443971 | MS.gene29875:CDS | 25.0% |
| !!! | TAGAACTAAATTTTTTGGAG+AGG | - | chr3.3:38443620-38443639 | None:intergenic | 25.0% |
| AAAAACATGTCCTCCAAATT+AGG | - | chr3.3:38443427-38443446 | None:intergenic | 30.0% | |
| AGAAAACACGATGTTATTGT+CGG | - | chr3.3:38443021-38443040 | None:intergenic | 30.0% | |
| AGAAGAACAGACTAACATAA+AGG | - | chr3.3:38443559-38443578 | None:intergenic | 30.0% | |
| AGTGAAGAAGAAACAAACAT+AGG | - | chr3.3:38443456-38443475 | None:intergenic | 30.0% | |
| ATACATAACTAGGGCATAAT+AGG | - | chr3.3:38443353-38443372 | None:intergenic | 30.0% | |
| CAAGGTTCAATGTTTCATTT+GGG | + | chr3.3:38444284-38444303 | MS.gene29875:CDS | 30.0% | |
| GAAATATGCGAGAAACAAAA+AGG | - | chr3.3:38444405-38444424 | None:intergenic | 30.0% | |
| GCTAATGCACTTTACTTTAA+AGG | + | chr3.3:38443950-38443969 | MS.gene29875:CDS | 30.0% | |
| TACATAACTAGGGCATAATA+GGG | - | chr3.3:38443352-38443371 | None:intergenic | 30.0% | |
| TTATCTTCACCTTGTCTATA+AGG | - | chr3.3:38444121-38444140 | None:intergenic | 30.0% | |
| TTCATCGAAGTAAATGAAGA+AGG | + | chr3.3:38444433-38444452 | MS.gene29875:CDS | 30.0% | |
| ! | ATGTTTCGCATTCTTTTTCT+TGG | - | chr3.3:38442870-38442889 | None:intergenic | 30.0% |
| ! | TGTGAATTTATGGGCTAAAA+AGG | + | chr3.3:38443859-38443878 | MS.gene29875:CDS | 30.0% |
| !! | AAGGTTTTGGTATAGTAACT+CGG | - | chr3.3:38444224-38444243 | None:intergenic | 30.0% |
| !! | ATTAGACACAATTTGTTGGA+AGG | - | chr3.3:38443267-38443286 | None:intergenic | 30.0% |
| !!! | TTCTGTTGATTTTCAGAACA+AGG | + | chr3.3:38443307-38443326 | MS.gene29875:CDS | 30.0% |
| ACAAACCATTAACGAATGAG+AGG | - | chr3.3:38443214-38443233 | None:intergenic | 35.0% | |
| ATAAAGGTTCACCACATACA+TGG | - | chr3.3:38443543-38443562 | None:intergenic | 35.0% | |
| ATGATTATTACTCGTTGCGT+TGG | - | chr3.3:38443713-38443732 | None:intergenic | 35.0% | |
| CCAAATGAAACATTGAACCT+TGG | - | chr3.3:38444286-38444305 | None:intergenic | 35.0% | |
| CCAAGGTTCAATGTTTCATT+TGG | + | chr3.3:38444283-38444302 | MS.gene29875:CDS | 35.0% | |
| GAAAACACGATGTTATTGTC+GGG | - | chr3.3:38443020-38443039 | None:intergenic | 35.0% | |
| GAAGGAGAGTTTAAGAGAAA+GGG | - | chr3.3:38443249-38443268 | None:intergenic | 35.0% | |
| GTTGAGATGATTGGTAGATT+CGG | - | chr3.3:38443129-38443148 | None:intergenic | 35.0% | |
| TAGGCAATTTCAGAATTCCA+AGG | + | chr3.3:38444266-38444285 | MS.gene29875:CDS | 35.0% | |
| TCAATTCTTCTTCTTCGTGA+TGG | - | chr3.3:38442819-38442838 | None:intergenic | 35.0% | |
| TCTCATTCGTTAATGGTTTG+TGG | + | chr3.3:38443213-38443232 | MS.gene29875:CDS | 35.0% | |
| TGAAACTTCTGACATGTTGA+AGG | + | chr3.3:38444309-38444328 | MS.gene29875:CDS | 35.0% | |
| TTACTTCCAAATGCAAGAGA+TGG | + | chr3.3:38444163-38444182 | MS.gene29875:CDS | 35.0% | |
| TTGCTTTCTTCTGCAAGTAT+CGG | - | chr3.3:38442845-38442864 | None:intergenic | 35.0% | |
| ! | ACTTTACTTTAAAGGGGTGT+GGG | + | chr3.3:38443958-38443977 | MS.gene29875:CDS | 35.0% |
| ! | GAGTTTCGTTAAGTTGTTGA+CGG | - | chr3.3:38443924-38443943 | None:intergenic | 35.0% |
| ! | TGTTAGTCTGTTCTTCTAGA+AGG | + | chr3.3:38443562-38443581 | MS.gene29875:intron | 35.0% |
| !! | AAAAATGGTGGACTTTCTTG+AGG | + | chr3.3:38444372-38444391 | MS.gene29875:CDS | 35.0% |
| ACCGAAACAATCCTCTTTGT+AGG | + | chr3.3:38444565-38444584 | MS.gene29875:CDS | 40.0% | |
| AGCACAACTTGTAGTGATAG+CGG | - | chr3.3:38443044-38443063 | None:intergenic | 40.0% | |
| CCCTACAAAGAGGATTGTTT+CGG | - | chr3.3:38444569-38444588 | None:intergenic | 40.0% | |
| CCGAAACAATCCTCTTTGTA+GGG | + | chr3.3:38444566-38444585 | MS.gene29875:CDS | 40.0% | |
| CTGAAATTGCCTACTCTCTT+TGG | - | chr3.3:38444259-38444278 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAGACA+AGG | + | chr3.3:38444109-38444128 | MS.gene29875:CDS | 40.0% | |
| GACAAAGGAGTTGAGATGAT+TGG | - | chr3.3:38443138-38443157 | None:intergenic | 40.0% | |
| GCTGATGTATTCGGAATCAA+GGG | + | chr3.3:38444478-38444497 | MS.gene29875:CDS | 40.0% | |
| GGAAGGAGAGTTTAAGAGAA+AGG | - | chr3.3:38443250-38443269 | None:intergenic | 40.0% | |
| GGATCAACAGTTTGATGCTT+CGG | + | chr3.3:38443979-38443998 | MS.gene29875:CDS | 40.0% | |
| TGCTGATGTATTCGGAATCA+AGG | + | chr3.3:38444477-38444496 | MS.gene29875:CDS | 40.0% | |
| TGGGCTAAAAAGGAGACAAA+TGG | + | chr3.3:38443869-38443888 | MS.gene29875:CDS | 40.0% | |
| ! | CACTTTACTTTAAAGGGGTG+TGG | + | chr3.3:38443957-38443976 | MS.gene29875:CDS | 40.0% |
| !! | AAATGCAAGAGATGGACTGT+CGG | + | chr3.3:38444171-38444190 | MS.gene29875:CDS | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+GGG | - | chr3.3:38444361-38444380 | None:intergenic | 40.0% |
| !! | AGAGTCTGTTTGGTTGGTAA+TGG | - | chr3.3:38442925-38442944 | None:intergenic | 40.0% |
| !! | CACCATTTTTGTCAAACCTC+CGG | - | chr3.3:38444362-38444381 | None:intergenic | 40.0% |
| !! | CATCAGATAAGGTGATGGAA+AGG | - | chr3.3:38443169-38443188 | None:intergenic | 40.0% |
| !! | GGAGACAAATGGTCTTATTG+AGG | + | chr3.3:38443880-38443899 | MS.gene29875:CDS | 40.0% |
| AACAATCCTCTTTGTAGGGC+AGG | + | chr3.3:38444570-38444589 | MS.gene29875:CDS | 45.0% | |
| AAGTTGTTGACGGAGTCTGA+AGG | - | chr3.3:38443914-38443933 | None:intergenic | 45.0% | |
| AGAGATGTTTGACGATGTCG+AGG | - | chr3.3:38442986-38443005 | None:intergenic | 45.0% | |
| AGTTCCCTTCATGACTAGCA+AGG | + | chr3.3:38444048-38444067 | MS.gene29875:CDS | 45.0% | |
| ATCCTCCTTGCTAGTCATGA+AGG | - | chr3.3:38444056-38444075 | None:intergenic | 45.0% | |
| CGGAGGTTTGACAAAAATGG+TGG | + | chr3.3:38444360-38444379 | MS.gene29875:CDS | 45.0% | |
| CGTCTTTCTCCAAAGAGAGT+AGG | + | chr3.3:38444247-38444266 | MS.gene29875:CDS | 45.0% | |
| GACAGTCCATCTCTTGCATT+TGG | - | chr3.3:38444172-38444191 | None:intergenic | 45.0% | |
| GAGATGTTTGACGATGTCGA+GGG | - | chr3.3:38442985-38443004 | None:intergenic | 45.0% | |
| GATGATTGGTAGATTCGGAG+CGG | - | chr3.3:38443124-38443143 | None:intergenic | 45.0% | |
| GCAGTCACTGCTGATGTATT+CGG | + | chr3.3:38444469-38444488 | MS.gene29875:CDS | 45.0% | |
| TCCCGGAGGTTTGACAAAAA+TGG | + | chr3.3:38444357-38444376 | MS.gene29875:CDS | 45.0% | |
| TCCTCCTTGCTAGTCATGAA+GGG | - | chr3.3:38444055-38444074 | None:intergenic | 45.0% | |
| TCTGACATGTTGAAGGAGCT+AGG | + | chr3.3:38444316-38444335 | MS.gene29875:CDS | 45.0% | |
| TGGAGAAGCTGTTGTTGTGT+CGG | - | chr3.3:38443095-38443114 | None:intergenic | 45.0% | |
| ! | GAGAAAGACGCTGAAGGTTT+TGG | - | chr3.3:38444237-38444256 | None:intergenic | 45.0% |
| ! | GTGACTGATTCTTCTTCGTG+AGG | - | chr3.3:38442903-38442922 | None:intergenic | 45.0% |
| ! | TCTTTGGAGAAAGACGCTGA+AGG | - | chr3.3:38444243-38444262 | None:intergenic | 45.0% |
| ! | TTTGGTTGCTGCTTGGTTTG+TGG | - | chr3.3:38442953-38442972 | None:intergenic | 45.0% |
| !! | GTGGTTTTACCTTTCTCTCC+CGG | + | chr3.3:38444340-38444359 | MS.gene29875:CDS | 45.0% |
| AGCGGCATCAGATAAGGTGA+TGG | - | chr3.3:38443174-38443193 | None:intergenic | 50.0% | |
| CATGTTGAAGGAGCTAGGAG+TGG | + | chr3.3:38444321-38444340 | MS.gene29875:CDS | 50.0% | |
| CCATTAACGAATGAGAGGCG+AGG | - | chr3.3:38443209-38443228 | None:intergenic | 50.0% | |
| CCTCGCCTCTCATTCGTTAA+TGG | + | chr3.3:38443206-38443225 | MS.gene29875:CDS | 50.0% | |
| CTTATCGCTGCTGGATCTGA+GGG | + | chr3.3:38443068-38443087 | MS.gene29875:CDS | 50.0% | |
| GAGGGAAGAGTCTGTTTGGT+TGG | - | chr3.3:38442931-38442950 | None:intergenic | 50.0% | |
| GGAAAGGAGTTCAGCGACAA+AGG | - | chr3.3:38443153-38443172 | None:intergenic | 50.0% | |
| TCCCTTCATGACTAGCAAGG+AGG | + | chr3.3:38444051-38444070 | MS.gene29875:CDS | 50.0% | |
| TGAGAACCTGCCCTACAAAG+AGG | - | chr3.3:38444579-38444598 | None:intergenic | 50.0% | |
| TGTGGAGGGAAGAGTCTGTT+TGG | - | chr3.3:38442935-38442954 | None:intergenic | 50.0% | |
| ! | GTTTTACCTTTCTCTCCCGG+AGG | + | chr3.3:38444343-38444362 | MS.gene29875:CDS | 50.0% |
| ! | TGTCGAGGGATACGTTGGTT+TGG | - | chr3.3:38442971-38442990 | None:intergenic | 50.0% |
| !! | ACGTTGGTTTGGTTGCTGCT+TGG | - | chr3.3:38442960-38442979 | None:intergenic | 50.0% |
| !! | ACTGTCGGCTTTGATCGAGA+AGG | + | chr3.3:38444186-38444205 | MS.gene29875:CDS | 50.0% |
| !! | GTTGCTGCTTGGTTTGTGGA+GGG | - | chr3.3:38442949-38442968 | None:intergenic | 50.0% |
| AGCAGGAGCGGCATCAGATA+AGG | - | chr3.3:38443180-38443199 | None:intergenic | 55.0% | |
| CCTCAGATCCAGCAGCGATA+AGG | - | chr3.3:38443070-38443089 | None:intergenic | 55.0% | |
| CCTTATCGCTGCTGGATCTG+AGG | + | chr3.3:38443067-38443086 | MS.gene29875:CDS | 55.0% | |
| GACGATGTCGAGGGATACGT+TGG | - | chr3.3:38442976-38442995 | None:intergenic | 55.0% | |
| GATTGGTAGATTCGGAGCGG+AGG | - | chr3.3:38443121-38443140 | None:intergenic | 55.0% | |
| GTCAAACCTCCGGGAGAGAA+AGG | - | chr3.3:38444352-38444371 | None:intergenic | 55.0% | |
| TAGATTCGGAGCGGAGGAAG+TGG | - | chr3.3:38443115-38443134 | None:intergenic | 55.0% | |
| TTATCTGATGCCGCTCCTGC+TGG | + | chr3.3:38443179-38443198 | MS.gene29875:CDS | 55.0% | |
| ! | GTCGGCTTTGATCGAGAAGG+TGG | + | chr3.3:38444189-38444208 | MS.gene29875:CDS | 55.0% |
| !! | GGTTGCTGCTTGGTTTGTGG+AGG | - | chr3.3:38442950-38442969 | None:intergenic | 55.0% |
| ! | GTGCTCAGCCTTATCGCTGC+TGG | + | chr3.3:38443059-38443078 | MS.gene29875:CDS | 60.0% |
| TCTGATGCCGCTCCTGCTGG+TGG | + | chr3.3:38443182-38443201 | MS.gene29875:CDS | 65.0% | |
| GAGAGGCGAGGACCACCAGC+AGG | - | chr3.3:38443197-38443216 | None:intergenic | 70.0% | |
| GCGAGGACCACCAGCAGGAG+CGG | - | chr3.3:38443192-38443211 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 38442801 | 38444615 | 38442801 | ID=MS.gene29875 |
| chr3.3 | mRNA | 38442801 | 38444615 | 38442801 | ID=MS.gene29875.t1;Parent=MS.gene29875 |
| chr3.3 | exon | 38442801 | 38443328 | 38442801 | ID=MS.gene29875.t1.exon1;Parent=MS.gene29875.t1 |
| chr3.3 | CDS | 38442801 | 38443328 | 38442801 | ID=cds.MS.gene29875.t1;Parent=MS.gene29875.t1 |
| chr3.3 | exon | 38443839 | 38444615 | 38443839 | ID=MS.gene29875.t1.exon2;Parent=MS.gene29875.t1 |
| chr3.3 | CDS | 38443839 | 38444615 | 38443839 | ID=cds.MS.gene29875.t1;Parent=MS.gene29875.t1 |
| Gene Sequence |
| Protein sequence |
