AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30420.t1 MTR_8g021130 98.152 433 8 0 14 446 353 785 0.0 872
MS.gene30420.t1 MTR_2g042130 51.501 433 193 7 14 438 352 775 1.55e-144 431
MS.gene30420.t1 MTR_4g095360 51.936 439 192 9 8 437 328 756 4.44e-143 427
MS.gene30420.t1 MTR_4g125180 51.501 433 192 8 14 438 332 754 1.70e-141 423
MS.gene30420.t1 MTR_3g102810 51.011 445 195 8 8 438 322 757 3.66e-140 419
MS.gene30420.t1 MTR_5g016120 50.342 439 200 8 8 437 333 762 5.23e-137 411
MS.gene30420.t1 MTR_0047s0120 51.247 441 193 10 8 437 329 758 2.23e-133 402
MS.gene30420.t1 MTR_7g075900 49.766 428 197 8 19 437 355 773 4.85e-132 399
MS.gene30420.t1 MTR_4g073540 50.342 439 195 9 8 433 337 765 3.62e-130 394
MS.gene30420.t1 MTR_1g018510 47.875 447 210 8 8 438 289 728 4.86e-130 392
MS.gene30420.t1 MTR_8g022870 49.775 444 192 9 14 433 337 773 1.65e-126 385
MS.gene30420.t1 MTR_1g102350 47.586 435 211 8 8 433 348 774 1.22e-124 380
MS.gene30420.t1 MTR_7g098630 48.387 434 202 10 14 434 335 759 1.18e-115 359
MS.gene30420.t1 MTR_4g102400 46.353 425 204 11 21 438 348 755 2.59e-108 337
MS.gene30420.t1 MTR_4g134320 43.021 437 219 10 9 434 347 764 4.11e-105 329
MS.gene30420.t1 MTR_3g082200 42.032 433 226 9 14 436 215 632 5.08e-104 322
MS.gene30420.t1 MTR_3g082200 42.032 433 226 9 14 436 230 647 9.47e-104 322
MS.gene30420.t1 MTR_3g082200 42.263 433 225 9 14 436 353 770 1.21e-102 323
MS.gene30420.t1 MTR_5g055920 42.177 441 230 9 9 437 241 668 4.98e-101 316
MS.gene30420.t1 MTR_4g103480 40.492 447 243 7 2 437 354 788 4.63e-100 316
MS.gene30420.t1 MTR_4g103450 40.045 447 245 7 2 437 311 745 1.02e-98 312
MS.gene30420.t1 MTR_4g103495 40.618 453 238 8 2 439 191 627 5.93e-98 306
MS.gene30420.t1 MTR_5g011280 40.972 432 226 12 14 434 341 754 2.33e-96 306
MS.gene30420.t1 MTR_7g098070 41.284 436 226 10 9 433 343 759 3.84e-96 305
MS.gene30420.t1 MTR_4g103490 39.093 463 239 8 2 437 339 785 2.19e-95 304
MS.gene30420.t1 MTR_5g011310 41.706 422 216 12 25 434 349 752 1.15e-94 301
MS.gene30420.t1 MTR_5g011340 41.784 426 218 12 21 434 342 749 4.05e-94 300
MS.gene30420.t1 MTR_5g011270 42.143 420 215 11 25 434 349 750 1.46e-93 298
MS.gene30420.t1 MTR_5g011320 40.984 427 219 10 21 434 338 744 3.72e-93 297
MS.gene30420.t1 MTR_4g103430 39.286 448 241 7 2 434 336 767 7.51e-93 297
MS.gene30420.t1 MTR_5g011260 41.905 420 216 11 25 434 349 750 1.32e-92 296
MS.gene30420.t1 MTR_5g011190 40.845 426 222 11 21 434 345 752 1.08e-91 293
MS.gene30420.t1 MTR_5g011370 40.610 426 223 11 21 434 365 772 2.12e-90 291
MS.gene30420.t1 MTR_5g096750 40.940 447 216 13 9 436 348 765 1.36e-88 286
MS.gene30420.t1 MTR_4g103400 37.838 444 246 9 9 434 344 775 3.85e-87 282
MS.gene30420.t1 MTR_3g061110 38.688 442 230 11 14 436 334 753 1.53e-86 280
MS.gene30420.t1 MTR_5g025010 39.909 441 226 12 9 436 304 718 3.79e-86 278
MS.gene30420.t1 MTR_4g053630 38.532 436 239 11 9 433 233 650 6.08e-86 276
MS.gene30420.t1 MTR_5g025010 39.910 446 219 13 9 436 336 750 7.98e-86 278
MS.gene30420.t1 MTR_4g103495 41.353 399 206 7 2 388 340 722 2.12e-85 277
MS.gene30420.t1 MTR_4g053630 38.532 436 239 11 9 433 310 727 2.16e-85 276
MS.gene30420.t1 MTR_1g078110 38.551 428 234 11 14 433 345 751 3.47e-85 276
MS.gene30420.t1 MTR_8g072440 37.529 437 240 9 9 436 299 711 2.08e-84 273
MS.gene30420.t1 MTR_8g072440 37.529 437 240 9 9 436 341 753 4.65e-84 273
MS.gene30420.t1 MTR_7g081580 41.667 444 214 15 21 439 364 787 1.09e-83 273
MS.gene30420.t1 MTR_7g081750 39.130 460 235 15 9 436 352 798 2.01e-83 273
MS.gene30420.t1 MTR_8g083220 39.052 443 229 11 9 436 359 775 2.83e-83 272
MS.gene30420.t1 MTR_8g024420 38.409 440 232 15 9 433 304 719 5.68e-81 265
MS.gene30420.t1 MTR_7g481600 40.498 442 222 13 21 439 364 787 7.59e-81 266
MS.gene30420.t1 MTR_4g053635 37.472 443 231 13 9 433 256 670 3.34e-80 261
MS.gene30420.t1 MTR_8g042670 40.326 429 232 10 19 436 219 634 3.76e-80 260
MS.gene30420.t1 MTR_8g024380 38.657 432 232 13 14 433 346 756 1.17e-79 262
MS.gene30420.t1 MTR_8g042670 40.326 429 232 10 19 436 343 758 4.87e-79 260
MS.gene30420.t1 MTR_5g085690 37.668 446 245 14 9 433 353 786 7.43e-79 260
MS.gene30420.t1 MTR_2g018135 39.367 442 233 12 14 438 362 785 3.40e-78 258
MS.gene30420.t1 MTR_7g081420 38.852 453 232 16 9 436 353 785 8.60e-78 257
MS.gene30420.t1 MTR_8g024390 36.927 436 244 13 9 433 340 755 3.69e-77 255
MS.gene30420.t1 MTR_7g118080 37.413 433 234 14 14 433 345 753 8.04e-76 252
MS.gene30420.t1 MTR_2g018125 39.189 444 230 13 14 438 364 786 1.19e-75 252
MS.gene30420.t1 MTR_7g079310 38.228 429 225 18 23 433 355 761 1.95e-75 251
MS.gene30420.t1 MTR_8g042710 38.851 435 233 12 19 436 346 764 3.39e-75 250
MS.gene30420.t1 MTR_3g104930 37.104 442 246 13 9 432 331 758 4.17e-75 250
MS.gene30420.t1 MTR_7g081500 37.303 445 249 13 9 436 352 783 4.67e-75 250
MS.gene30420.t1 MTR_7g081380 36.709 474 231 18 9 436 357 807 3.99e-73 245
MS.gene30420.t1 MTR_2g049200 36.490 433 236 14 14 433 347 753 9.83e-73 243
MS.gene30420.t1 MTR_3g114420 37.819 431 240 11 18 432 343 761 9.11e-71 238
MS.gene30420.t1 MTR_7g079300 37.089 426 233 17 23 433 358 763 4.59e-69 234
MS.gene30420.t1 MTR_8g024370 36.784 454 236 16 8 439 336 760 4.59e-67 228
MS.gene30420.t1 MTR_6g055570 36.613 437 230 17 14 436 327 730 1.69e-66 226
MS.gene30420.t1 MTR_3g464790 36.613 437 243 11 9 432 313 728 2.54e-66 226
MS.gene30420.t1 MTR_1g079120 37.237 427 228 15 25 433 354 758 9.42e-66 224
MS.gene30420.t1 MTR_8g079900 36.816 402 217 11 44 433 265 641 1.02e-65 222
MS.gene30420.t1 MTR_8g005710 36.219 439 231 16 14 436 294 699 2.37e-65 223
MS.gene30420.t1 MTR_8g033150 36.343 432 229 16 18 433 321 722 5.84e-65 222
MS.gene30420.t1 MTR_8g079900 36.816 402 217 11 44 433 363 739 5.98e-65 222
MS.gene30420.t1 MTR_8g033150 36.343 432 229 16 18 433 348 749 7.88e-65 222
MS.gene30420.t1 MTR_7g075890 34.660 427 241 13 19 433 495 895 1.69e-62 218
MS.gene30420.t1 MTR_1g048110 33.409 440 243 17 14 436 325 731 3.37e-60 209
MS.gene30420.t1 MTR_1g007030 33.257 436 249 14 14 436 327 733 4.79e-60 209
MS.gene30420.t1 MTR_1g006990 33.790 438 246 15 14 436 327 735 8.09e-60 208
MS.gene30420.t1 MTR_7g104200 35.374 441 242 15 9 433 326 739 1.49e-58 205
MS.gene30420.t1 MTR_8g027260 40.836 311 160 11 131 436 361 652 5.34e-58 202
MS.gene30420.t1 MTR_7g034380 35.253 434 242 16 14 436 287 692 6.93e-58 202
MS.gene30420.t1 MTR_6g055410 32.794 433 234 14 14 436 327 712 4.29e-56 197
MS.gene30420.t1 MTR_3g010080 33.409 440 243 18 14 436 326 732 1.23e-55 197
MS.gene30420.t1 MTR_6g075370 42.963 270 125 7 148 402 399 654 1.82e-55 195
MS.gene30420.t1 MTR_2g042650 32.715 431 250 11 9 436 250 643 4.27e-55 194
MS.gene30420.t1 MTR_8g006680 32.798 436 243 15 14 436 325 723 1.60e-52 188
MS.gene30420.t1 MTR_8g005300 32.798 436 243 15 14 436 325 723 1.60e-52 188
MS.gene30420.t1 MTR_8g005640 32.798 436 243 15 14 436 325 723 1.60e-52 188
MS.gene30420.t1 MTR_4g127480 32.385 457 247 17 23 436 377 814 2.32e-49 180
MS.gene30420.t1 MTR_4g126230 38.492 252 130 7 118 364 17 248 1.96e-44 155
MS.gene30420.t1 MTR_2g037850 31.808 459 245 19 23 435 377 813 6.56e-44 164
MS.gene30420.t1 MTR_2g044630 30.206 437 245 13 14 438 320 708 1.83e-41 157
MS.gene30420.t1 MTR_4g071560 37.011 281 152 8 9 273 270 541 3.73e-41 154
MS.gene30420.t1 MTR_3g114140 33.033 333 198 10 71 394 104 420 4.07e-41 151
MS.gene30420.t1 MTR_8g042710 40.164 244 130 6 19 251 346 584 1.55e-38 148
MS.gene30420.t1 MTR_4g132620 32.323 396 223 18 64 430 430 809 4.79e-38 147
MS.gene30420.t1 MTR_3g114410 38.340 253 139 6 9 251 335 580 1.00e-37 145
MS.gene30420.t1 MTR_8g089230 33.681 288 165 8 160 434 570 844 1.17e-37 146
MS.gene30420.t1 MTR_2g046740 34.602 289 162 11 160 434 562 837 2.58e-36 142
MS.gene30420.t1 MTR_2g042640 30.789 380 205 12 23 398 285 610 2.75e-36 141
MS.gene30420.t1 MTR_3g452290 34.766 256 127 5 182 436 353 569 9.35e-35 136
MS.gene30420.t1 MTR_3g451220 34.766 256 127 5 182 436 353 569 9.35e-35 136
MS.gene30420.t1 MTR_5g044060 46.763 139 70 2 145 282 1 136 1.76e-31 119
MS.gene30420.t1 MTR_2g070260 36.058 208 118 6 220 425 1 195 4.69e-30 116
MS.gene30420.t1 MTR_4g053665 32.031 256 125 7 179 433 1 208 5.27e-30 116
MS.gene30420.t1 MTR_7g081660 39.691 194 102 5 250 439 374 556 3.09e-28 117
MS.gene30420.t1 MTR_5g081130 36.932 176 98 6 265 433 1 170 3.60e-24 99.8
MS.gene30420.t1 MTR_4g118440 33.200 250 112 11 178 424 1 198 2.06e-23 98.2
MS.gene30420.t1 MTR_8g027660 33.333 198 95 6 244 435 80 246 2.32e-23 99.0
MS.gene30420.t1 MTR_7g097250 33.180 217 100 8 25 237 1 176 6.80e-23 95.9
MS.gene30420.t1 MTR_5g011300 46.939 98 51 1 220 317 1 97 6.90e-21 87.4
MS.gene30420.t1 MTR_7g079295 39.869 153 79 6 286 433 363 507 8.55e-20 92.0
MS.gene30420.t1 MTR_3g005755 50.562 89 36 3 197 279 220 306 4.49e-16 79.0
MS.gene30420.t1 MTR_3g114400 29.518 166 100 4 268 432 10 159 2.06e-12 65.5
MS.gene30420.t1 MTR_5g081100 35.519 183 90 10 12 180 258 426 2.49e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30420.t1 AT3G14067 65.581 430 139 3 14 437 343 769 0.0 576
MS.gene30420.t1 AT5G67360 54.442 439 181 8 8 438 330 757 1.60e-148 441
MS.gene30420.t1 AT2G05920 53.613 429 184 8 18 441 336 754 9.90e-147 436
MS.gene30420.t1 AT4G34980 51.481 439 191 10 8 433 327 756 4.13e-139 417
MS.gene30420.t1 AT5G51750 46.697 439 218 9 8 437 345 776 6.28e-127 386
MS.gene30420.t1 AT3G14240 48.565 453 205 9 2 433 322 767 1.53e-124 380
MS.gene30420.t1 AT1G04110 46.774 434 208 9 14 434 346 769 3.68e-114 353
MS.gene30420.t1 AT2G04160 44.444 441 221 10 7 436 344 771 7.73e-108 336
MS.gene30420.t1 AT1G01900 46.279 430 210 9 19 437 354 773 7.89e-107 333
MS.gene30420.t1 AT5G59810 42.824 432 222 10 18 439 362 778 8.86e-99 313
MS.gene30420.t1 AT5G45650 38.741 413 208 8 44 434 398 787 7.61e-80 263
MS.gene30420.t1 AT5G45650 38.741 413 208 8 44 434 398 787 7.61e-80 263
MS.gene30420.t1 AT1G20160 36.697 436 257 7 9 433 293 720 8.10e-79 259
MS.gene30420.t1 AT1G20160 36.697 436 257 7 9 433 332 759 1.84e-78 259
MS.gene30420.t1 AT5G59100 38.173 427 227 13 19 433 334 735 7.37e-78 257
MS.gene30420.t1 AT5G59090 38.356 438 229 14 9 433 317 726 1.93e-75 250
MS.gene30420.t1 AT5G59090 38.356 438 229 14 9 433 315 724 2.13e-75 250
MS.gene30420.t1 AT5G59120 36.937 444 239 14 9 439 316 731 8.29e-75 248
MS.gene30420.t1 AT5G59090 37.900 438 226 14 9 433 317 721 1.03e-73 245
MS.gene30420.t1 AT4G26330 41.791 335 184 6 109 439 398 725 1.46e-73 245
MS.gene30420.t1 AT4G26330 41.791 335 184 6 109 439 412 739 1.69e-73 245
MS.gene30420.t1 AT3G46850 37.736 424 228 13 19 433 336 732 5.55e-73 244
MS.gene30420.t1 AT5G59130 37.029 451 235 16 9 445 280 695 2.60e-71 238
MS.gene30420.t1 AT5G59130 37.029 451 235 16 9 445 315 730 3.35e-71 239
MS.gene30420.t1 AT5G59130 37.029 451 235 16 9 445 319 734 3.43e-71 239
MS.gene30420.t1 AT5G58830 36.842 437 213 15 9 433 318 703 2.69e-70 236
MS.gene30420.t1 AT1G20150 37.500 432 244 11 19 432 344 767 2.05e-69 235
MS.gene30420.t1 AT5G58820 37.619 420 212 13 19 433 324 698 3.41e-68 230
MS.gene30420.t1 AT3G46840 35.581 430 240 12 19 439 337 738 6.06e-68 230
MS.gene30420.t1 AT5G58840 36.768 427 206 14 19 433 330 704 1.32e-67 229
MS.gene30420.t1 AT4G00230 36.111 432 229 14 19 433 340 741 1.99e-67 229
MS.gene30420.t1 AT5G45640 35.402 435 239 11 19 434 339 750 3.61e-67 228
MS.gene30420.t1 AT5G59130 37.029 451 225 17 9 445 319 724 3.98e-67 228
MS.gene30420.t1 AT1G32970 37.642 441 238 15 9 436 307 723 1.22e-65 224
MS.gene30420.t1 AT4G10540 36.795 443 240 16 9 436 347 764 1.19e-62 216
MS.gene30420.t1 AT4G10520 35.535 439 241 13 9 436 338 745 1.23e-62 216
MS.gene30420.t1 AT4G10550 36.404 445 238 15 9 436 295 711 1.45e-62 215
MS.gene30420.t1 AT4G10550 36.404 445 238 15 9 436 295 711 1.45e-62 215
MS.gene30420.t1 AT4G10550 36.404 445 238 15 9 436 351 767 3.23e-62 215
MS.gene30420.t1 AT4G10550 36.404 445 238 15 9 436 367 783 3.84e-62 215
MS.gene30420.t1 AT4G10510 37.246 443 238 15 9 436 278 695 1.02e-61 213
MS.gene30420.t1 AT4G10510 37.246 443 238 15 9 436 293 710 1.19e-61 213
MS.gene30420.t1 AT1G32950 36.199 442 244 15 9 436 294 711 1.78e-61 213
MS.gene30420.t1 AT4G10510 37.246 443 238 15 9 436 337 754 2.07e-61 213
MS.gene30420.t1 AT4G10510 37.246 443 238 15 9 436 349 766 2.76e-61 213
MS.gene30420.t1 AT1G32950 36.199 442 244 15 9 436 345 762 4.16e-61 212
MS.gene30420.t1 AT1G32960 36.735 441 243 15 9 436 349 766 8.94e-61 211
MS.gene30420.t1 AT5G59190 36.343 432 230 13 18 435 288 688 4.04e-60 208
MS.gene30420.t1 AT5G11940 36.019 422 236 12 19 436 362 753 5.97e-59 206
MS.gene30420.t1 AT1G32940 36.569 443 241 15 9 436 295 712 1.69e-58 204
MS.gene30420.t1 AT1G32940 36.569 443 241 15 9 436 295 712 1.69e-58 204
MS.gene30420.t1 AT1G32940 36.569 443 241 15 9 436 346 763 2.92e-58 204
MS.gene30420.t1 AT5G67090 33.577 411 233 13 18 424 341 715 3.30e-58 204
MS.gene30420.t1 AT4G10530 34.624 439 232 14 9 436 342 736 3.48e-57 201
MS.gene30420.t1 AT5G03620 35.747 442 235 16 18 433 338 756 1.37e-56 200
MS.gene30420.t1 AT4G21630 33.705 448 238 16 2 436 353 754 2.27e-56 199
MS.gene30420.t1 AT1G66220 34.204 421 239 13 19 436 360 745 1.64e-55 196
MS.gene30420.t1 AT1G66210 34.491 432 247 13 9 436 352 751 1.46e-54 194
MS.gene30420.t1 AT4G21650 33.949 433 240 13 9 436 370 761 1.58e-54 194
MS.gene30420.t1 AT4G21640 40.064 312 160 11 131 436 438 728 9.39e-54 191
MS.gene30420.t1 AT4G21326 33.806 423 241 12 19 436 300 688 1.08e-53 191
MS.gene30420.t1 AT4G15040 33.958 427 241 16 18 433 287 683 1.13e-50 182
MS.gene30420.t1 AT4G15040 33.958 427 241 16 18 433 287 683 1.13e-50 182
MS.gene30420.t1 AT4G21323 35.172 435 241 18 9 436 394 794 1.13e-48 178
MS.gene30420.t1 AT2G19170 31.435 474 258 19 8 435 358 810 9.41e-48 176
MS.gene30420.t1 AT2G19170 31.435 474 258 19 8 435 358 810 9.41e-48 176
MS.gene30420.t1 AT4G30020 30.490 469 269 20 8 435 359 811 7.93e-47 173
MS.gene30420.t1 AT4G30020 30.490 469 269 20 8 435 359 811 7.93e-47 173
MS.gene30420.t1 AT4G30020 30.490 469 269 20 8 435 359 811 7.93e-47 173
MS.gene30420.t1 AT4G30020 30.490 469 269 20 8 435 359 811 7.93e-47 173
MS.gene30420.t1 AT2G39850 34.328 335 184 12 118 433 446 763 8.23e-45 167
MS.gene30420.t1 AT1G32980 44.737 190 96 5 216 404 3 184 2.47e-42 148
MS.gene30420.t1 AT4G00230 39.592 245 120 8 19 251 340 568 1.08e-40 153
MS.gene30420.t1 AT1G30600 29.929 421 245 16 50 437 425 828 1.71e-37 145
MS.gene30420.t1 AT4G20430 33.788 293 158 10 160 434 549 823 5.08e-36 141
MS.gene30420.t1 AT4G20430 33.443 305 164 11 151 434 561 847 5.71e-36 141
MS.gene30420.t1 AT4G20430 33.443 305 164 11 151 434 561 847 5.71e-36 141
MS.gene30420.t1 AT1G62340 33.798 287 167 9 160 436 557 830 9.79e-36 140
MS.gene30420.t1 AT5G44530 33.333 288 164 11 160 433 558 831 1.06e-34 137
MS.gene30420.t1 AT5G58840 36.596 235 114 6 19 251 330 531 4.61e-34 134
MS.gene30420.t1 AT5G03620 38.554 249 127 7 18 251 338 575 4.93e-31 125
MS.gene30420.t1 AT5G44530 30.671 313 164 12 160 433 558 856 3.17e-30 124
MS.gene30420.t1 AT5G59110 40.476 168 80 7 276 433 7 164 6.09e-25 101
MS.gene30420.t1 AT1G32940 35.433 254 138 8 9 251 346 584 2.54e-23 103
MS.gene30420.t1 AT1G20160 33.333 183 105 5 9 180 332 508 2.03e-14 75.9

Find 98 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAACTTCCTTTGATTTA+TGG 0.083877 8.1:+78262008 MS.gene30420:CDS
CCTTCATTCTCTGTGGTATT+TGG 0.146944 8.1:+78262899 MS.gene30420:CDS
ATCTCTGCAGTTCTATAATT+TGG 0.147251 8.1:-78262386 None:intergenic
GGTAGTAGATATTGTTATTT+AGG 0.147721 8.1:+78262041 MS.gene30420:CDS
ATGGATTGGTCAAGTATAAA+AGG 0.210508 8.1:+78262930 MS.gene30420:CDS
GGTGGTGTTTCTTTGTATTA+TGG 0.226921 8.1:+78261969 MS.gene30420:CDS
GCTTATAATGTTGATAATTC+TGG 0.236964 8.1:+78262629 MS.gene30420:CDS
TATGGTGGTTCTCAGAGTTT+TGG 0.240064 8.1:+78263106 MS.gene30420:CDS
GTTGAGTTTAACATAATTTC+AGG 0.246420 8.1:+78262503 MS.gene30420:CDS
ATTGCAGCTGGTGACCATTC+TGG 0.247177 8.1:-78262584 None:intergenic
CCAGGATTAAGTGCTTTATT+AGG 0.251896 8.1:-78262722 None:intergenic
TAATAGAGTGGAAGTTTAAA+AGG 0.256374 8.1:-78263209 None:intergenic
TAATTCTGGTGGCAAAATTA+AGG 0.257676 8.1:+78262643 MS.gene30420:CDS
TTTCCTGCTGATGTTGTTCT+TGG 0.258315 8.1:+78261930 MS.gene30420:CDS
TTCCTTTGTTCAATTGGTTA+TGG 0.274759 8.1:+78262782 MS.gene30420:CDS
TTAGCTTTCCTTTGTTCAAT+TGG 0.293827 8.1:+78262776 MS.gene30420:CDS
ACGGCCACGATCAAGTTTAA+AGG 0.313384 8.1:+78262299 MS.gene30420:CDS
GAGGTTACTTTCACTAGAAT+TGG 0.314316 8.1:+78263082 MS.gene30420:CDS
ATCAAAGGAAGTTTATTATC+AGG 0.315714 8.1:-78262002 None:intergenic
GGAAGATTGTTGTTTGTGAT+AGG 0.330767 8.1:+78262090 MS.gene30420:CDS
GGTGGCAAAATTAAGGATCT+TGG 0.345609 8.1:+78262650 MS.gene30420:CDS
GTAGTAGATATTGTTATTTA+GGG 0.351319 8.1:+78262042 MS.gene30420:CDS
ACTTTCACTAGAATTGGATA+TGG 0.352536 8.1:+78263088 MS.gene30420:CDS
GTCAAAGTGAATGCTCCTTT+TGG 0.366995 8.1:+78262995 MS.gene30420:CDS
GAGTCAAATCCATTTGTTCA+TGG 0.372476 8.1:+78262683 MS.gene30420:CDS
GAAAGTGGGTCCTACTGATT+TGG 0.373228 8.1:+78262463 MS.gene30420:CDS
TTACTCCATCTAGCAGCAAT+TGG 0.373437 8.1:-78263169 None:intergenic
TAAAGCACTTAATCCTGGTT+TGG 0.376880 8.1:+78262727 MS.gene30420:CDS
AAAAGGGTTGTTACTAATGT+TGG 0.388679 8.1:+78262947 MS.gene30420:CDS
TGGTGGGTTAGGTATGATTA+TGG 0.389945 8.1:+78262157 MS.gene30420:CDS
TTAGATTCTTCAAAAGTTCA+AGG 0.397244 8.1:+78262068 MS.gene30420:CDS
ATGTCATGTCCTCATGTTAG+TGG 0.409773 8.1:+78262533 MS.gene30420:CDS
AAAGGGTAGTGCTGTGAAAA+AGG 0.415891 8.1:+78262133 MS.gene30420:CDS
CGGCCACGATCAAGTTTAAA+GGG 0.424918 8.1:+78262300 MS.gene30420:CDS
AATCCATTTGTTCATGGAGC+TGG 0.427176 8.1:+78262689 MS.gene30420:CDS
TCACAAACATTATAACTAGT+TGG 0.428416 8.1:-78262836 None:intergenic
GAAGATTGTTGTTTGTGATA+GGG 0.434266 8.1:+78262091 MS.gene30420:CDS
AAGATTGTTGTTTGTGATAG+GGG 0.437871 8.1:+78262092 MS.gene30420:CDS
GCTGATGTTGTTCTTGGTGA+TGG 0.441693 8.1:+78261936 MS.gene30420:CDS
AAAATTAAGGATCTTGGAAC+AGG 0.448197 8.1:+78262656 MS.gene30420:CDS
CCTAATAAAGCACTTAATCC+TGG 0.452946 8.1:+78262722 MS.gene30420:CDS
TTCAATTGGTTATGGTGCTA+AGG 0.457417 8.1:+78262790 MS.gene30420:CDS
TTGTTGTTTGTGATAGGGGA+GGG 0.464351 8.1:+78262096 MS.gene30420:CDS
AGGGAATGCTAGAGTTGAAA+AGG 0.468436 8.1:+78262115 MS.gene30420:CDS
GAAAGGAAATTTACTAGTCC+TGG 0.469138 8.1:+78262863 MS.gene30420:CDS
GTGGAATCGCCGCATTGCTT+AGG 0.469330 8.1:+78262552 MS.gene30420:CDS
TACTCCATCTAGCAGCAATT+GGG 0.473834 8.1:-78263168 None:intergenic
CTACTGAAAACAAGTTTGCT+AGG 0.474557 8.1:-78263037 None:intergenic
GGAGCCCAATTGCTGCTAGA+TGG 0.475810 8.1:+78263164 MS.gene30420:CDS
CTGATTTGGAGATTGATCCT+AGG 0.481305 8.1:+78262477 MS.gene30420:CDS
ATTTGGACCCCTGCTCGAAA+AGG 0.484108 8.1:-78262369 None:intergenic
AAACCAGATGTTATAGCTCC+TGG 0.486756 8.1:+78262413 MS.gene30420:CDS
AGCAGGGTGGACTGGGAAAG+TGG 0.487436 8.1:+78262448 MS.gene30420:CDS
ATGTTAAACTCAACTCTCCT+AGG 0.492137 8.1:-78262494 None:intergenic
ACACCAGGAGCTATAACATC+TGG 0.498812 8.1:-78262416 None:intergenic
TGTCCAGCTCCATGAACAAA+TGG 0.500679 8.1:-78262692 None:intergenic
ACACTAACATCAACACCAAA+AGG 0.504598 8.1:-78263010 None:intergenic
AAAGCTGATTTAATTGCAGC+TGG 0.511792 8.1:-78262596 None:intergenic
ATAATGTTTGTGAAAATGAA+AGG 0.515170 8.1:+78262846 MS.gene30420:CDS
TGGATTGGTCAAGTATAAAA+GGG 0.522524 8.1:+78262931 MS.gene30420:CDS
TTAAACTTGATCGTGGCCGT+TGG 0.524118 8.1:-78262296 None:intergenic
TTCACTAGAATTGGATATGG+TGG 0.527213 8.1:+78263091 MS.gene30420:CDS
TTAGGAAAGCTTATCCAGAA+TGG 0.530563 8.1:+78262570 MS.gene30420:CDS
GGGAATGCTAGAGTTGAAAA+GGG 0.532095 8.1:+78262116 MS.gene30420:CDS
AAGTTTAAAGGGACTGTGAT+CGG 0.533538 8.1:+78262311 MS.gene30420:CDS
TTGATTTATGGTGCTGATTG+TGG 0.536788 8.1:+78262020 MS.gene30420:CDS
CCAAATACCACAGAGAATGA+AGG 0.542360 8.1:-78262899 None:intergenic
TCACCAAGAACAACATCAGC+AGG 0.548720 8.1:-78261933 None:intergenic
TAGATTCTTCAAAAGTTCAA+GGG 0.554676 8.1:+78262069 MS.gene30420:CDS
ATGGCGAATACCGAAGAAAA+CGG 0.557894 8.1:+78262176 MS.gene30420:CDS
GTGGTATTTGGTGCTAACAA+TGG 0.561086 8.1:+78262911 MS.gene30420:CDS
TCTTGTCGCAGCTACAATGG+TGG 0.564793 8.1:+78262223 MS.gene30420:CDS
GGGACTGTGATCGGTGGTGA+AGG 0.565737 8.1:+78262320 MS.gene30420:CDS
CTCGAAAAGGAAGCAACTTG+AGG 0.567588 8.1:-78262356 None:intergenic
GCAGGGTGGACTGGGAAAGT+GGG 0.579787 8.1:+78262449 MS.gene30420:CDS
ATTGTTGTTTGTGATAGGGG+AGG 0.593562 8.1:+78262095 MS.gene30420:CDS
TATAATGTTGATAATTCTGG+TGG 0.594191 8.1:+78262632 MS.gene30420:CDS
ATTTGGTGCTAACAATGGAT+TGG 0.594347 8.1:+78262916 MS.gene30420:CDS
GGATCAATCTCCAAATCAGT+AGG 0.597514 8.1:-78262473 None:intergenic
TTTAAATCATAAACCAAACC+AGG 0.601502 8.1:-78262740 None:intergenic
GAAGGGTAATTCAAATCACC+AGG 0.602341 8.1:-78262881 None:intergenic
CTTGTCGCAGCTACAATGGT+GGG 0.608447 8.1:+78262224 MS.gene30420:CDS
CAAATACCACAGAGAATGAA+GGG 0.610141 8.1:-78262898 None:intergenic
GAATTACCCTTCATTCTCTG+TGG 0.610947 8.1:+78262892 MS.gene30420:CDS
GAAGCAACTTGAGGAGCGGA+AGG 0.611783 8.1:-78262347 None:intergenic
CAATCAGCACCATAAATCAA+AGG 0.613447 8.1:-78262017 None:intergenic
CACCATAACCAATTGAACAA+AGG 0.614550 8.1:-78262784 None:intergenic
ACGTGGATGATGTAGGTTTG+AGG 0.620605 8.1:-78260958 None:intergenic
CCTGCTAAAATGTTAACACC+AGG 0.625045 8.1:-78262431 None:intergenic
GGGTCACTTGAATGGAGTGA+TGG 0.634361 8.1:+78263127 MS.gene30420:CDS
TCATCTTGTCGCAGCTACAA+TGG 0.636106 8.1:+78262220 MS.gene30420:CDS
AGTCCCTTTAAACTTGATCG+TGG 0.661635 8.1:-78262303 None:intergenic
AAAGGAAGCAACTTGAGGAG+CGG 0.670659 8.1:-78262351 None:intergenic
TTTAAAGGGACTGTGATCGG+TGG 0.672157 8.1:+78262314 MS.gene30420:CDS
AAAATCGAGTGAGAATCCAA+CGG 0.680395 8.1:+78262280 MS.gene30420:CDS
GCGGCGATTCCACTAACATG+AGG 0.696032 8.1:-78262542 None:intergenic
GTGATGGAAGTCATATTGTG+AGG 0.752670 8.1:+78263143 MS.gene30420:CDS
ATAAGCTTTCCTAAGCAATG+CGG 0.771646 8.1:-78262561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTTTGTGAAAATGAA+AGG + chr8.1:78262846-78262865 MS.gene30420:CDS 20.0%
!!! AATAAACTTCCTTTGATTTA+TGG + chr8.1:78262008-78262027 MS.gene30420:CDS 20.0%
!!! GTAGTAGATATTGTTATTTA+GGG + chr8.1:78262042-78262061 MS.gene30420:CDS 20.0%
!!! GTTGAGAAAATTGAATTTTT+TGG - chr8.1:78260994-78261013 None:intergenic 20.0%
! AACTCTAATTCCAAGATTAT+CGG + chr8.1:78261423-78261442 MS.gene30420:intron 25.0%
! ATCAAAGGAAGTTTATTATC+AGG - chr8.1:78262005-78262024 None:intergenic 25.0%
! GTTGAGTTTAACATAATTTC+AGG + chr8.1:78262503-78262522 MS.gene30420:CDS 25.0%
! TAGATTCTTCAAAAGTTCAA+GGG + chr8.1:78262069-78262088 MS.gene30420:CDS 25.0%
! TATAAAATCTGTTGGAAACT+TGG + chr8.1:78261651-78261670 MS.gene30420:intron 25.0%
! TCACAAACATTATAACTAGT+TGG - chr8.1:78262839-78262858 None:intergenic 25.0%
! TTAGATTCTTCAAAAGTTCA+AGG + chr8.1:78262068-78262087 MS.gene30420:CDS 25.0%
! TTTAAATCATAAACCAAACC+AGG - chr8.1:78262743-78262762 None:intergenic 25.0%
!! GCTATATTAACAGAAGTATA+AGG - chr8.1:78261867-78261886 None:intergenic 25.0%
!!! AGAGAAATGGTTTTTTTGAT+TGG - chr8.1:78261016-78261035 None:intergenic 25.0%
!!! GCTTATAATGTTGATAATTC+TGG + chr8.1:78262629-78262648 MS.gene30420:CDS 25.0%
!!! GGTAGTAGATATTGTTATTT+AGG + chr8.1:78262041-78262060 MS.gene30420:CDS 25.0%
!!! TATAATGTTGATAATTCTGG+TGG + chr8.1:78262632-78262651 MS.gene30420:CDS 25.0%
AAAAGGGTTGTTACTAATGT+TGG + chr8.1:78262947-78262966 MS.gene30420:CDS 30.0%
AAAATTAAGGATCTTGGAAC+AGG + chr8.1:78262656-78262675 MS.gene30420:CDS 30.0%
ACTTTCACTAGAATTGGATA+TGG + chr8.1:78263088-78263107 MS.gene30420:CDS 30.0%
ATCGAATCACGAAAATAATG+AGG - chr8.1:78261771-78261790 None:intergenic 30.0%
ATCTCTGCAGTTCTATAATT+TGG - chr8.1:78262389-78262408 None:intergenic 30.0%
CATTAAAAAGTCCGAATTCT+TGG + chr8.1:78261355-78261374 MS.gene30420:intron 30.0%
TAATTCTGGTGGCAAAATTA+AGG + chr8.1:78262643-78262662 MS.gene30420:CDS 30.0%
TAGTATGAAGATAGCGAATT+TGG - chr8.1:78261188-78261207 None:intergenic 30.0%
TTCCTTTGTTCAATTGGTTA+TGG + chr8.1:78262782-78262801 MS.gene30420:CDS 30.0%
! AAACAAAACTCAAGCTTTTG+AGG + chr8.1:78263063-78263082 MS.gene30420:CDS 30.0%
! CATTTTCCTTTCCAAGAATT+CGG - chr8.1:78261369-78261388 None:intergenic 30.0%
! GGAGCTAAAGCTTTTTATAA+AGG + chr8.1:78261444-78261463 MS.gene30420:intron 30.0%
! TTAGCTTTCCTTTGTTCAAT+TGG + chr8.1:78262776-78262795 MS.gene30420:CDS 30.0%
! TTGCTGCTTATAAAATCTGT+TGG + chr8.1:78261643-78261662 MS.gene30420:intron 30.0%
!! AAGATTGTTGTTTGTGATAG+GGG + chr8.1:78262092-78262111 MS.gene30420:CDS 30.0%
!! ATGGATTGGTCAAGTATAAA+AGG + chr8.1:78262930-78262949 MS.gene30420:CDS 30.0%
!! GAAGATTGTTGTTTGTGATA+GGG + chr8.1:78262091-78262110 MS.gene30420:CDS 30.0%
!! TGGATTGGTCAAGTATAAAA+GGG + chr8.1:78262931-78262950 MS.gene30420:CDS 30.0%
AAAAGTCCGAATTCTTGGAA+AGG + chr8.1:78261360-78261379 MS.gene30420:intron 35.0%
AAAATCGAGTGAGAATCCAA+CGG + chr8.1:78262280-78262299 MS.gene30420:CDS 35.0%
AAATCTCCTAGAGATACTGA+AGG + chr8.1:78261513-78261532 MS.gene30420:intron 35.0%
AAGTTTAAAGGGACTGTGAT+CGG + chr8.1:78262311-78262330 MS.gene30420:CDS 35.0%
ACACTAACATCAACACCAAA+AGG - chr8.1:78263013-78263032 None:intergenic 35.0%
AGTTGAGAATGGAAGAGAAA+TGG - chr8.1:78261029-78261048 None:intergenic 35.0%
ATAAGCTTTCCTAAGCAATG+CGG - chr8.1:78262564-78262583 None:intergenic 35.0%
ATGTTAAACTCAACTCTCCT+AGG - chr8.1:78262497-78262516 None:intergenic 35.0%
CAAATACCACAGAGAATGAA+GGG - chr8.1:78262901-78262920 None:intergenic 35.0%
CAATCAGCACCATAAATCAA+AGG - chr8.1:78262020-78262039 None:intergenic 35.0%
CACCATAACCAATTGAACAA+AGG - chr8.1:78262787-78262806 None:intergenic 35.0%
CTTCTGTTAATATAGCTCCT+TGG + chr8.1:78261871-78261890 MS.gene30420:intron 35.0%
GAAAGGAAATTTACTAGTCC+TGG + chr8.1:78262863-78262882 MS.gene30420:CDS 35.0%
GAGTCAAATCCATTTGTTCA+TGG + chr8.1:78262683-78262702 MS.gene30420:CDS 35.0%
GATTCCACAGTTTCATCAAT+AGG - chr8.1:78261492-78261511 None:intergenic 35.0%
GGTGGTGTTTCTTTGTATTA+TGG + chr8.1:78261969-78261988 MS.gene30420:CDS 35.0%
GTTGAAAAGCTTCTAAGTTC+CGG - chr8.1:78261315-78261334 None:intergenic 35.0%
TCAGAAGCAAAATGAGAGTT+AGG - chr8.1:78261258-78261277 None:intergenic 35.0%
TTAGAGTTACACGAAGAAGA+AGG - chr8.1:78261411-78261430 None:intergenic 35.0%
TTAGGAAAGCTTATCCAGAA+TGG + chr8.1:78262570-78262589 MS.gene30420:CDS 35.0%
TTCACTAGAATTGGATATGG+TGG + chr8.1:78263091-78263110 MS.gene30420:CDS 35.0%
TTCTGATATTCTTGCTGCTA+TGG + chr8.1:78261683-78261702 MS.gene30420:intron 35.0%
TTTCGTGATTCGATTGCTAT+TGG + chr8.1:78261777-78261796 MS.gene30420:intron 35.0%
! AAAGCTGATTTAATTGCAGC+TGG - chr8.1:78262599-78262618 None:intergenic 35.0%
! CCAGGATTAAGTGCTTTATT+AGG - chr8.1:78262725-78262744 None:intergenic 35.0%
! CCTAATAAAGCACTTAATCC+TGG + chr8.1:78262722-78262741 MS.gene30420:CDS 35.0%
! CTACTGAAAACAAGTTTGCT+AGG - chr8.1:78263040-78263059 None:intergenic 35.0%
! GAGGTTACTTTCACTAGAAT+TGG + chr8.1:78263082-78263101 MS.gene30420:CDS 35.0%
! TAAAGCACTTAATCCTGGTT+TGG + chr8.1:78262727-78262746 MS.gene30420:CDS 35.0%
! TTAACAGAAGTATAAGGACC+AGG - chr8.1:78261861-78261880 None:intergenic 35.0%
! TTCAATTGGTTATGGTGCTA+AGG + chr8.1:78262790-78262809 MS.gene30420:CDS 35.0%
!! ATTTGGTGCTAACAATGGAT+TGG + chr8.1:78262916-78262935 MS.gene30420:CDS 35.0%
!! CTGGTGTTAACATTTTAGCA+GGG + chr8.1:78262432-78262451 MS.gene30420:CDS 35.0%
!! GGAAGATTGTTGTTTGTGAT+AGG + chr8.1:78262090-78262109 MS.gene30420:CDS 35.0%
!! GTTGGTAATGCTAGTTTGTT+TGG + chr8.1:78261576-78261595 MS.gene30420:intron 35.0%
!! TTGATTTATGGTGCTGATTG+TGG + chr8.1:78262020-78262039 MS.gene30420:CDS 35.0%
AAACCAGATGTTATAGCTCC+TGG + chr8.1:78262413-78262432 MS.gene30420:CDS 40.0%
AAAGGGTAGTGCTGTGAAAA+AGG + chr8.1:78262133-78262152 MS.gene30420:CDS 40.0%
AATCCATTTGTTCATGGAGC+TGG + chr8.1:78262689-78262708 MS.gene30420:CDS 40.0%
ACGACCTATTGATGAAACTG+TGG + chr8.1:78261485-78261504 MS.gene30420:intron 40.0%
AGGGAATGCTAGAGTTGAAA+AGG + chr8.1:78262115-78262134 MS.gene30420:CDS 40.0%
AGTCCCTTTAAACTTGATCG+TGG - chr8.1:78262306-78262325 None:intergenic 40.0%
ATGGCGAATACCGAAGAAAA+CGG + chr8.1:78262176-78262195 MS.gene30420:CDS 40.0%
ATGTCATGTCCTCATGTTAG+TGG + chr8.1:78262533-78262552 MS.gene30420:CDS 40.0%
ATGTGTATAGGATGGTTGCT+GGG - chr8.1:78261071-78261090 None:intergenic 40.0%
CCAAATACCACAGAGAATGA+AGG - chr8.1:78262902-78262921 None:intergenic 40.0%
CCTGCTAAAATGTTAACACC+AGG - chr8.1:78262434-78262453 None:intergenic 40.0%
CCTTCATTCTCTGTGGTATT+TGG + chr8.1:78262899-78262918 MS.gene30420:CDS 40.0%
GAAGGGTAATTCAAATCACC+AGG - chr8.1:78262884-78262903 None:intergenic 40.0%
GAATTACCCTTCATTCTCTG+TGG + chr8.1:78262892-78262911 MS.gene30420:CDS 40.0%
GATAGCGAATTTGGTCAGAT+TGG - chr8.1:78261179-78261198 None:intergenic 40.0%
GGATCAATCTCCAAATCAGT+AGG - chr8.1:78262476-78262495 None:intergenic 40.0%
GGATGTGTATGTGTATAGGA+TGG - chr8.1:78261079-78261098 None:intergenic 40.0%
GGGAATGCTAGAGTTGAAAA+GGG + chr8.1:78262116-78262135 MS.gene30420:CDS 40.0%
GGTGGCAAAATTAAGGATCT+TGG + chr8.1:78262650-78262669 MS.gene30420:CDS 40.0%
GGTTCATGTGATTTCGCTTT+CGG + chr8.1:78261725-78261744 MS.gene30420:intron 40.0%
TACTCCATCTAGCAGCAATT+GGG - chr8.1:78263171-78263190 None:intergenic 40.0%
TATGTGTATAGGATGGTTGC+TGG - chr8.1:78261072-78261091 None:intergenic 40.0%
TCTTGTTCTGCAGGTAATTC+AGG + chr8.1:78261834-78261853 MS.gene30420:intron 40.0%
TTACTCCATCTAGCAGCAAT+TGG - chr8.1:78263172-78263191 None:intergenic 40.0%
TTTCCTGCTGATGTTGTTCT+TGG + chr8.1:78261930-78261949 MS.gene30420:CDS 40.0%
! AGCTTTAGCTCCGATAATCT+TGG - chr8.1:78261436-78261455 None:intergenic 40.0%
! ATCAATTGTCGAAGCACCAA+CGG - chr8.1:78261904-78261923 None:intergenic 40.0%
! ATGGTGGTTCTCAGAGTTTT+GGG + chr8.1:78263107-78263126 MS.gene30420:CDS 40.0%
! GTCAAAGTGAATGCTCCTTT+TGG + chr8.1:78262995-78263014 MS.gene30420:CDS 40.0%
! GTGATGGAAGTCATATTGTG+AGG + chr8.1:78263143-78263162 MS.gene30420:CDS 40.0%
! TATGGTGGTTCTCAGAGTTT+TGG + chr8.1:78263106-78263125 MS.gene30420:CDS 40.0%
!! ATTGTTGTTTGTGATAGGGG+AGG + chr8.1:78262095-78262114 MS.gene30420:CDS 40.0%
!! CCTGGTGTTAACATTTTAGC+AGG + chr8.1:78262431-78262450 MS.gene30420:CDS 40.0%
!! CTGATTTGGAGATTGATCCT+AGG + chr8.1:78262477-78262496 MS.gene30420:CDS 40.0%
!! GTGGTATTTGGTGCTAACAA+TGG + chr8.1:78262911-78262930 MS.gene30420:CDS 40.0%
!! GTGTTAACATTTTAGCAGGG+TGG + chr8.1:78262435-78262454 MS.gene30420:CDS 40.0%
!! GTTGTTGTTTCTTGTTCTGC+AGG + chr8.1:78261825-78261844 MS.gene30420:intron 40.0%
!! TCGATTGCTATTGGTGCTTT+TGG + chr8.1:78261786-78261805 MS.gene30420:intron 40.0%
!! TGGTGGGTTAGGTATGATTA+TGG + chr8.1:78262157-78262176 MS.gene30420:CDS 40.0%
!! TTGTTGTTTGTGATAGGGGA+GGG + chr8.1:78262096-78262115 MS.gene30420:CDS 40.0%
!! TTTGCTTCTGAAGTCATCGT+CGG + chr8.1:78261267-78261286 MS.gene30420:intron 40.0%
!!! AGAGTTTTGGGTCACTTGAA+TGG + chr8.1:78263119-78263138 MS.gene30420:CDS 40.0%
!!! CTTGGTGATGGTAGAGTTTT+TGG + chr8.1:78261948-78261967 MS.gene30420:CDS 40.0%
!!! TTTTTGGTTGTTTTGCCACG+TGG - chr8.1:78260978-78260997 None:intergenic 40.0%
AAAGGAAGCAACTTGAGGAG+CGG - chr8.1:78262354-78262373 None:intergenic 45.0%
ACACCAGGAGCTATAACATC+TGG - chr8.1:78262419-78262438 None:intergenic 45.0%
ACATACACATCCGCCATTCA+CGG + chr8.1:78261087-78261106 MS.gene30420:intron 45.0%
ACGGCCACGATCAAGTTTAA+AGG + chr8.1:78262299-78262318 MS.gene30420:CDS 45.0%
ACGTGGATGATGTAGGTTTG+AGG - chr8.1:78260961-78260980 None:intergenic 45.0%
ATAGGATGGTTGCTGGGTTA+GGG - chr8.1:78261065-78261084 None:intergenic 45.0%
ATGAGAGTTAGGCCATAGAC+CGG - chr8.1:78261247-78261266 None:intergenic 45.0%
ATGGATGAAGCTGTTGCTGA+TGG + chr8.1:78261702-78261721 MS.gene30420:intron 45.0%
CATGTGATTTCGCTTTCGGT+TGG + chr8.1:78261729-78261748 MS.gene30420:intron 45.0%
CCATGTCCTTCAGTATCTCT+AGG - chr8.1:78261522-78261541 None:intergenic 45.0%
CCTAGAGATACTGAAGGACA+TGG + chr8.1:78261519-78261538 MS.gene30420:intron 45.0%
CGGCCACGATCAAGTTTAAA+GGG + chr8.1:78262300-78262319 MS.gene30420:CDS 45.0%
CTCGAAAAGGAAGCAACTTG+AGG - chr8.1:78262359-78262378 None:intergenic 45.0%
GCTGATGTTGTTCTTGGTGA+TGG + chr8.1:78261936-78261955 MS.gene30420:CDS 45.0%
TATAGGATGGTTGCTGGGTT+AGG - chr8.1:78261066-78261085 None:intergenic 45.0%
TCAAACCTACATCATCCACG+TGG + chr8.1:78260960-78260979 MS.gene30420:intron 45.0%
TCACCAAGAACAACATCAGC+AGG - chr8.1:78261936-78261955 None:intergenic 45.0%
TCATCTTGTCGCAGCTACAA+TGG + chr8.1:78262220-78262239 MS.gene30420:CDS 45.0%
TCTAAGTTCCGGCCATATAC+CGG - chr8.1:78261304-78261323 None:intergenic 45.0%
TGGATGAAGCTGTTGCTGAT+GGG + chr8.1:78261703-78261722 MS.gene30420:intron 45.0%
TGTCCAGCTCCATGAACAAA+TGG - chr8.1:78262695-78262714 None:intergenic 45.0%
TTAAACTTGATCGTGGCCGT+TGG - chr8.1:78262299-78262318 None:intergenic 45.0%
TTTAAAGGGACTGTGATCGG+TGG + chr8.1:78262314-78262333 MS.gene30420:CDS 45.0%
TTTGGTCAGATTGGATCGAG+AGG - chr8.1:78261170-78261189 None:intergenic 45.0%
! ACTCACACCCCTATTTTCCT+CGG + chr8.1:78261207-78261226 MS.gene30420:intron 45.0%
! AGTTTGTTTGGTTTCGCCAG+AGG + chr8.1:78261588-78261607 MS.gene30420:intron 45.0%
! GAAAGTGGGTCCTACTGATT+TGG + chr8.1:78262463-78262482 MS.gene30420:CDS 45.0%
! TGGCGGATGTGTATGTGTAT+AGG - chr8.1:78261083-78261102 None:intergenic 45.0%
! TTTTGCCACGTGGATGATGT+AGG - chr8.1:78260968-78260987 None:intergenic 45.0%
!! AACATTTTAGCAGGGTGGAC+TGG + chr8.1:78262440-78262459 MS.gene30420:CDS 45.0%
!! AAGCTCTTCGCCGTTTTCTT+CGG - chr8.1:78262189-78262208 None:intergenic 45.0%
!! AAGTTGCTTCCTTTTCGAGC+AGG + chr8.1:78262360-78262379 MS.gene30420:CDS 45.0%
!! ACATTTTAGCAGGGTGGACT+GGG + chr8.1:78262441-78262460 MS.gene30420:CDS 45.0%
!! AGTTGCTTCCTTTTCGAGCA+GGG + chr8.1:78262361-78262380 MS.gene30420:CDS 45.0%
!! GGTGATGGTAGAGTTTTTGG+TGG + chr8.1:78261951-78261970 MS.gene30420:CDS 45.0%
!! TCGCTTTCGGTTGGTTCTAA+TGG + chr8.1:78261738-78261757 MS.gene30420:intron 45.0%
AGCTTGGGATGGGGTTAAGT+GGG - chr8.1:78261121-78261140 None:intergenic 50.0%
AGGCCATAGACCGGATGATT+CGG - chr8.1:78261238-78261257 None:intergenic 50.0%
AGTGCTGTGAAAAAGGCTGG+TGG + chr8.1:78262140-78262159 MS.gene30420:CDS 50.0%
ATTGCAGCTGGTGACCATTC+TGG - chr8.1:78262587-78262606 None:intergenic 50.0%
ATTTGGACCCCTGCTCGAAA+AGG - chr8.1:78262372-78262391 None:intergenic 50.0%
CATACAGCTTCAACAGCAGC+TGG + chr8.1:78261546-78261565 MS.gene30420:intron 50.0%
CTTGTCGCAGCTACAATGGT+GGG + chr8.1:78262224-78262243 MS.gene30420:CDS 50.0%
GATTGGATCGAGAGGATGTC+CGG - chr8.1:78261162-78261181 None:intergenic 50.0%
GCACCAACGGTCAAAATCCA+AGG - chr8.1:78261891-78261910 None:intergenic 50.0%
GGATGAAGCTGTTGCTGATG+GGG + chr8.1:78261704-78261723 MS.gene30420:intron 50.0%
GGGTCACTTGAATGGAGTGA+TGG + chr8.1:78263127-78263146 MS.gene30420:CDS 50.0%
GGTAGTGCTGTGAAAAAGGC+TGG + chr8.1:78262137-78262156 MS.gene30420:CDS 50.0%
GTGCTGTGAAAAAGGCTGGT+GGG + chr8.1:78262141-78262160 MS.gene30420:CDS 50.0%
GTGTCCTTGACACCGGTATA+TGG + chr8.1:78261289-78261308 MS.gene30420:intron 50.0%
TCACCGAATCATCCGGTCTA+TGG + chr8.1:78261232-78261251 MS.gene30420:intron 50.0%
TCTGCAGGTAATTCAGGACC+TGG + chr8.1:78261840-78261859 MS.gene30420:intron 50.0%
TCTTGTCGCAGCTACAATGG+TGG + chr8.1:78262223-78262242 MS.gene30420:CDS 50.0%
! TAGGATGGTTGCTGGGTTAG+GGG - chr8.1:78261064-78261083 None:intergenic 50.0%
!! ACAGCAGCTGGTTCTGTTGT+TGG + chr8.1:78261558-78261577 MS.gene30420:intron 50.0%
!! ATAGACCGGATGATTCGGTG+AGG - chr8.1:78261233-78261252 None:intergenic 50.0%
!! GCTCCTTGGATTTTGACCGT+TGG + chr8.1:78261885-78261904 MS.gene30420:intron 50.0%
!! GTGAAAAAGGCTGGTGGGTT+AGG + chr8.1:78262146-78262165 MS.gene30420:CDS 50.0%
!! GTTGCTTCCTTTTCGAGCAG+GGG + chr8.1:78262362-78262381 MS.gene30420:CDS 50.0%
!!! GCTTTTGGTGCTGCACAACA+TGG + chr8.1:78261801-78261820 MS.gene30420:intron 50.0%
CAGAGGCGAAGCTAAGGGAA+TGG + chr8.1:78261605-78261624 MS.gene30420:intron 55.0%
CAGCTTGGGATGGGGTTAAG+TGG - chr8.1:78261122-78261141 None:intergenic 55.0%
CATTCCCTTAGCTTCGCCTC+TGG - chr8.1:78261607-78261626 None:intergenic 55.0%
CCTTGACACCGGTATATGGC+CGG + chr8.1:78261293-78261312 MS.gene30420:intron 55.0%
CGGTGAGGCCGAGGAAAATA+GGG - chr8.1:78261218-78261237 None:intergenic 55.0%
GAAGCAACTTGAGGAGCGGA+AGG - chr8.1:78262350-78262369 None:intergenic 55.0%
GATCGAGAGGATGTCCGGAT+GGG - chr8.1:78261157-78261176 None:intergenic 55.0%
GCGGCGATTCCACTAACATG+AGG - chr8.1:78262545-78262564 None:intergenic 55.0%
GGAGCCCAATTGCTGCTAGA+TGG + chr8.1:78263164-78263183 MS.gene30420:CDS 55.0%
GGATGTCCGGATGGGATTGA+AGG - chr8.1:78261149-78261168 None:intergenic 55.0%
GGATTGAAGGTGGGCAGCTT+GGG - chr8.1:78261136-78261155 None:intergenic 55.0%
GGTGAGGCCGAGGAAAATAG+GGG - chr8.1:78261217-78261236 None:intergenic 55.0%
GTCCGGATGGGATTGAAGGT+GGG - chr8.1:78261145-78261164 None:intergenic 55.0%
GTGGAATCGCCGCATTGCTT+AGG + chr8.1:78262552-78262571 MS.gene30420:CDS 55.0%
TCGGTGAGGCCGAGGAAAAT+AGG - chr8.1:78261219-78261238 None:intergenic 55.0%
TGCCCACCTTCAATCCCATC+CGG + chr8.1:78261140-78261159 MS.gene30420:intron 55.0%
TGGTGGGAGGGAGTTGAGAA+TGG - chr8.1:78261040-78261059 None:intergenic 55.0%
TGTCCGGATGGGATTGAAGG+TGG - chr8.1:78261146-78261165 None:intergenic 55.0%
TTCGCCAGAGGCGAAGCTAA+GGG + chr8.1:78261600-78261619 MS.gene30420:intron 55.0%
TTTCGCCAGAGGCGAAGCTA+AGG + chr8.1:78261599-78261618 MS.gene30420:intron 55.0%
! ATCGTCGGTGTCCTTGACAC+CGG + chr8.1:78261282-78261301 MS.gene30420:intron 55.0%
! ATGGTTGCTGGGTTAGGGGA+TGG - chr8.1:78261060-78261079 None:intergenic 55.0%
! TTGCTGGGTTAGGGGATGGT+GGG - chr8.1:78261056-78261075 None:intergenic 55.0%
AAGGTGGGCAGCTTGGGATG+GGG - chr8.1:78261130-78261149 None:intergenic 60.0%
CTCGGCCTCACCGAATCATC+CGG + chr8.1:78261225-78261244 MS.gene30420:intron 60.0%
GAAGGTGGGCAGCTTGGGAT+GGG - chr8.1:78261131-78261150 None:intergenic 60.0%
GGATCGAGAGGATGTCCGGA+TGG - chr8.1:78261158-78261177 None:intergenic 60.0%
GGCTGAGAAGCCGTGAATGG+CGG - chr8.1:78261100-78261119 None:intergenic 60.0%
GGGACTGTGATCGGTGGTGA+AGG + chr8.1:78262320-78262339 MS.gene30420:CDS 60.0%
GGGATTGAAGGTGGGCAGCT+TGG - chr8.1:78261137-78261156 None:intergenic 60.0%
TGAAGGTGGGCAGCTTGGGA+TGG - chr8.1:78261132-78261151 None:intergenic 60.0%
! CCGGCCATATACCGGTGTCA+AGG - chr8.1:78261296-78261315 None:intergenic 60.0%
! GTGGGCTGAGAAGCCGTGAA+TGG - chr8.1:78261103-78261122 None:intergenic 60.0%
! GTTGCTGGGTTAGGGGATGG+TGG - chr8.1:78261057-78261076 None:intergenic 60.0%
!! AGCAGGGTGGACTGGGAAAG+TGG + chr8.1:78262448-78262467 MS.gene30420:CDS 60.0%
!! GCAGGGTGGACTGGGAAAGT+GGG + chr8.1:78262449-78262468 MS.gene30420:CDS 60.0%
!! TGGGTTAGGGGATGGTGGGA+GGG - chr8.1:78261052-78261071 None:intergenic 60.0%
!! CGGATGATTCGGTGAGGCCG+AGG - chr8.1:78261227-78261246 None:intergenic 65.0%
!! CTGGGTTAGGGGATGGTGGG+AGG - chr8.1:78261053-78261072 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 78260929 78263216 78260929 ID=MS.gene30420
chr8.1 mRNA 78260929 78263216 78260929 ID=MS.gene30420.t1;Parent=MS.gene30420
chr8.1 exon 78260929 78260978 78260929 ID=MS.gene30420.t1.exon1;Parent=MS.gene30420.t1
chr8.1 CDS 78260929 78260978 78260929 ID=cds.MS.gene30420.t1;Parent=MS.gene30420.t1
chr8.1 exon 78261926 78263216 78261926 ID=MS.gene30420.t1.exon2;Parent=MS.gene30420.t1
chr8.1 CDS 78261926 78263216 78261926 ID=cds.MS.gene30420.t1;Parent=MS.gene30420.t1
Gene Sequence

>MS.gene30420

ATGAACATGAACAACAATCAAACAACTCTCCTCAAACCTACATCATCCACGTGGCAAAACAACCAAAAAATTCAATTTTCTCAACCAATCAAAAAAACCATTTCTCTTCCATTCTCAACTCCCTCCCACCATCCCCTAACCCAGCAACCATCCTATACACATACACATCCGCCATTCACGGCTTCTCAGCCCACTTAACCCCATCCCAAGCTGCCCACCTTCAATCCCATCCGGACATCCTCTCGATCCAATCTGACCAAATTCGCTATCTTCATACTACTCACACCCCTATTTTCCTCGGCCTCACCGAATCATCCGGTCTATGGCCTAACTCTCATTTTGCTTCTGAAGTCATCGTCGGTGTCCTTGACACCGGTATATGGCCGGAACTTAGAAGCTTTTCAACATCTGATGATGATTCAAATTCATTAAAAAGTCCGAATTCTTGGAAAGGAAAATGTGAAATTAGTAAAGATTTTCCTTCTTCTTCGTGTAACTCTAATTCCAAGATTATCGGAGCTAAAGCTTTTTATAAAGGCTATGAAGCTTATCTTCAACGACCTATTGATGAAACTGTGGAATCGAAATCTCCTAGAGATACTGAAGGACATGGAACACATACAGCTTCAACAGCAGCTGGTTCTGTTGTTGGTAATGCTAGTTTGTTTGGTTTCGCCAGAGGCGAAGCTAAGGGAATGGCAACAAAAGCTAGAATTGCTGCTTATAAAATCTGTTGGAAACTTGGTTGTTTTGATTCTGATATTCTTGCTGCTATGGATGAAGCTGTTGCTGATGGGGTTCATGTGATTTCGCTTTCGGTTGGTTCTAATGGTTATGCGCCTCATTATTTTCGTGATTCGATTGCTATTGGTGCTTTTGGTGCTGCACAACATGGTGTTGTTGTTTCTTGTTCTGCAGGTAATTCAGGACCTGGTCCTTATACTTCTGTTAATATAGCTCCTTGGATTTTGACCGTTGGTGCTTCGACAATTGATAGAGAGTTTCCTGCTGATGTTGTTCTTGGTGATGGTAGAGTTTTTGGTGGTGTTTCTTTGTATTATGGTGATAGTTTACCTGATAATAAACTTCCTTTGATTTATGGTGCTGATTGTGGTAGTAGATATTGTTATTTAGGGTCTTTAGATTCTTCAAAAGTTCAAGGGAAGATTGTTGTTTGTGATAGGGGAGGGAATGCTAGAGTTGAAAAGGGTAGTGCTGTGAAAAAGGCTGGTGGGTTAGGTATGATTATGGCGAATACCGAAGAAAACGGCGAAGAGCTTCTTGCTGATGCTCATCTTGTCGCAGCTACAATGGTGGGTCAAAATGCTGCTGAAAAGATTAGAGATTATATAAAATCGAGTGAGAATCCAACGGCCACGATCAAGTTTAAAGGGACTGTGATCGGTGGTGAAGGTTCGCCTTCCGCTCCTCAAGTTGCTTCCTTTTCGAGCAGGGGTCCAAATTATAGAACTGCAGAGATTCTTAAACCAGATGTTATAGCTCCTGGTGTTAACATTTTAGCAGGGTGGACTGGGAAAGTGGGTCCTACTGATTTGGAGATTGATCCTAGGAGAGTTGAGTTTAACATAATTTCAGGTACTTCTATGTCATGTCCTCATGTTAGTGGAATCGCCGCATTGCTTAGGAAAGCTTATCCAGAATGGTCACCAGCTGCAATTAAATCAGCTTTGATGACAACAGCTTATAATGTTGATAATTCTGGTGGCAAAATTAAGGATCTTGGAACAGGTAAAGAGTCAAATCCATTTGTTCATGGAGCTGGACATGTTGATCCTAATAAAGCACTTAATCCTGGTTTGGTTTATGATTTAAACATTAATGACTATTTAGCTTTCCTTTGTTCAATTGGTTATGGTGCTAAGGAAATTCAGATTTTCACTAGAGAGCCAACTAGTTATAATGTTTGTGAAAATGAAAGGAAATTTACTAGTCCTGGTGATTTGAATTACCCTTCATTCTCTGTGGTATTTGGTGCTAACAATGGATTGGTCAAGTATAAAAGGGTTGTTACTAATGTTGGTGATTCTGTTGATGCTGTTTACACTGTCAAAGTGAATGCTCCTTTTGGTGTTGATGTTAGTGTTTCACCTAGCAAACTTGTTTTCAGTAGTGAAAACAAAACTCAAGCTTTTGAGGTTACTTTCACTAGAATTGGATATGGTGGTTCTCAGAGTTTTGGGTCACTTGAATGGAGTGATGGAAGTCATATTGTGAGGAGCCCAATTGCTGCTAGATGGAGTAACGAATTTTCATCAGCATCCTTTTAA
Protein sequence

>MS.gene30420.t1

MNMNNNQTTLLKPTSSTEFPADVVLGDGRVFGGVSLYYGDSLPDNKLPLIYGADCGSRYCYLGSLDSSKVQGKIVVCDRGGNARVEKGSAVKKAGGLGMIMANTEENGEELLADAHLVAATMVGQNAAEKIRDYIKSSENPTATIKFKGTVIGGEGSPSAPQVASFSSRGPNYRTAEILKPDVIAPGVNILAGWTGKVGPTDLEIDPRRVEFNIISGTSMSCPHVSGIAALLRKAYPEWSPAAIKSALMTTAYNVDNSGGKIKDLGTGKESNPFVHGAGHVDPNKALNPGLVYDLNINDYLAFLCSIGYGAKEIQIFTREPTSYNVCENERKFTSPGDLNYPSFSVVFGANNGLVKYKRVVTNVGDSVDAVYTVKVNAPFGVDVSVSPSKLVFSSENKTQAFEVTFTRIGYGGSQSFGSLEWSDGSHIVRSPIAARWSNEFSSASF