AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30437


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30437.t1 MTR_7g451890 87.657 397 48 1 1 396 6 402 0.0 677
MS.gene30437.t1 MTR_7g047780 87.909 397 47 1 1 396 6 402 0.0 676
MS.gene30437.t1 MTR_7g050750 85.354 396 57 1 2 396 1 396 0.0 653
MS.gene30437.t1 MTR_7g050810 84.518 394 60 1 4 396 11 404 0.0 645
MS.gene30437.t1 MTR_3g101180 64.484 397 134 3 5 394 2 398 1.41e-176 498
MS.gene30437.t1 MTR_8g461160 65.051 392 136 1 5 395 2 393 2.86e-171 484
MS.gene30437.t1 MTR_7g050830 77.429 319 40 3 4 301 11 318 3.32e-168 473
MS.gene30437.t1 MTR_3g101010 62.821 390 138 4 9 396 5 389 2.41e-166 471
MS.gene30437.t1 MTR_4g045707 61.183 389 144 3 9 396 6 388 1.17e-163 464
MS.gene30437.t1 MTR_3g018740 62.087 393 137 5 7 395 3 387 1.04e-162 462
MS.gene30437.t1 MTR_3g101130 61.026 390 144 4 9 396 6 389 3.85e-160 456
MS.gene30437.t1 MTR_8g027395 58.824 391 152 4 7 396 15 397 1.16e-153 439
MS.gene30437.t1 MTR_3g101030 56.500 400 151 6 15 396 35 429 5.32e-147 424
MS.gene30437.t1 MTR_3g048000 57.106 387 140 5 10 394 28 390 6.24e-147 422
MS.gene30437.t1 MTR_2g046030 56.091 394 159 5 7 395 3 387 3.32e-144 415
MS.gene30437.t1 MTR_3g101200 57.252 393 140 6 3 394 25 390 4.69e-144 415
MS.gene30437.t1 MTR_4g088525 59.229 363 141 2 33 394 11 367 1.34e-143 413
MS.gene30437.t1 MTR_8g027420 55.612 392 152 5 7 396 4 375 5.86e-143 411
MS.gene30437.t1 MTR_2g045980 55.584 394 161 5 7 395 3 387 1.09e-142 411
MS.gene30437.t1 MTR_3g101050 57.403 385 140 5 13 394 33 396 8.11e-141 407
MS.gene30437.t1 MTR_3g015620 53.553 394 156 5 4 395 11 379 1.96e-131 382
MS.gene30437.t1 MTR_4g088535 54.756 389 141 6 9 391 7 366 7.26e-131 381
MS.gene30437.t1 MTR_3g102920 52.713 387 138 7 13 394 62 408 3.24e-124 365
MS.gene30437.t1 MTR_3g101190 52.406 374 112 5 24 396 4 312 2.04e-122 357
MS.gene30437.t1 MTR_3g100995 62.500 256 91 2 141 396 14 264 5.69e-113 331
MS.gene30437.t1 MTR_3g018747 60.076 263 87 3 134 395 9 254 2.83e-102 303
MS.gene30437.t1 MTR_3g015760 61.364 264 94 4 134 395 23 280 3.51e-97 291
MS.gene30437.t1 MTR_3g100010 48.254 315 114 4 31 311 37 336 4.28e-91 278
MS.gene30437.t1 MTR_3g111160 61.778 225 78 4 175 396 1 220 8.07e-84 255
MS.gene30437.t1 MTR_3g100520 58.036 224 77 3 175 396 1 209 8.88e-80 244
MS.gene30437.t1 MTR_3g114310 39.737 380 206 10 33 396 38 410 5.69e-77 244
MS.gene30437.t1 MTR_3g101110 55.932 236 76 3 137 370 71 280 3.63e-76 238
MS.gene30437.t1 MTR_3g099970 60.714 196 60 2 134 329 20 198 1.95e-74 230
MS.gene30437.t1 MTR_2g046410 57.143 210 80 3 191 395 144 348 1.08e-72 231
MS.gene30437.t1 MTR_3g101150 67.722 158 47 2 240 394 1 157 4.46e-69 215
MS.gene30437.t1 MTR_3g101020 52.910 189 60 2 208 396 1 160 1.08e-59 191
MS.gene30437.t1 MTR_3g102870 54.140 157 72 0 197 353 1 157 4.60e-52 172
MS.gene30437.t1 MTR_3g111150 50.282 177 63 3 12 188 2 153 2.39e-50 167
MS.gene30437.t1 MTR_3g100990 54.331 127 55 2 9 134 5 129 9.94e-32 126
MS.gene30437.t1 MTR_3g101140 46.018 113 57 2 287 396 5 116 1.30e-21 89.7
MS.gene30437.t1 MTR_4g093550 47.126 87 44 1 7 93 4 88 4.56e-14 67.8
MS.gene30437.t1 MTR_6g046890 54.688 64 29 0 26 89 14 77 4.33e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30437.t1 AT1G47710 53.018 381 173 5 17 394 13 390 2.34e-135 393
MS.gene30437.t1 AT1G47710 53.018 381 173 5 17 394 40 417 3.00e-134 391
MS.gene30437.t1 AT2G26390 45.823 395 195 7 7 393 3 386 3.85e-117 346
MS.gene30437.t1 AT2G25240 47.315 391 191 8 7 393 3 382 3.14e-115 341
MS.gene30437.t1 AT3G45220 44.081 397 203 6 7 393 3 390 3.59e-111 331
MS.gene30437.t1 AT1G62170 43.687 396 186 7 7 393 64 431 3.28e-103 312
MS.gene30437.t1 AT1G64030 43.734 391 194 6 7 393 3 371 2.86e-101 305
MS.gene30437.t1 AT2G14540 47.139 367 165 7 32 393 55 397 9.94e-99 300
MS.gene30437.t1 AT2G35580 45.580 362 167 9 39 393 33 371 3.41e-97 295
MS.gene30437.t1 AT1G62170 40.326 429 186 8 7 393 64 464 6.72e-96 295
MS.gene30437.t1 AT1G64010 48.198 222 85 6 175 393 1 195 8.49e-63 200
MS.gene30437.t1 AT1G64010 47.826 207 78 6 190 393 2 181 4.78e-55 180
MS.gene30437.t1 AT1G63280 59.322 118 44 2 131 246 5 120 5.42e-38 133
MS.gene30437.t1 AT1G62160 41.935 186 77 4 212 393 60 218 4.20e-34 126
MS.gene30437.t1 AT1G51330 53.571 112 49 3 132 240 29 140 2.23e-27 107
MS.gene30437.t1 AT2G35555 38.835 103 41 2 254 354 1 83 2.11e-11 61.2
MS.gene30437.t1 AT1G64020 33.945 109 70 2 17 124 13 120 3.99e-11 60.5

Find 85 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAAAAGAAGTGAATTTA+TGG 0.185032 7.3:-53470513 MS.gene30437:CDS
AGTAAAGAACTTTATGTTTC+CGG 0.190548 7.3:-53469971 MS.gene30437:CDS
TCTGAGTTGCTAAAGAAATT+AGG 0.232348 7.3:-53470049 MS.gene30437:CDS
ACATAAAGTTCTTTACTTAT+AGG 0.236254 7.3:+53469977 None:intergenic
CCATCTTTGCCTTGTTTATA+AGG 0.244454 7.3:+53470244 None:intergenic
TTTATTCTTGCTGGTCATAA+AGG 0.249358 7.3:+53470309 None:intergenic
GTCAAATCTCCCATAGAAAA+AGG 0.250124 7.3:+53470016 None:intergenic
CACCTTTCCAACAAAGAGTA+TGG 0.347373 7.3:+53469778 None:intergenic
GATGAACTGTTTATTCTTGC+TGG 0.350388 7.3:+53470300 None:intergenic
CTTGTTTCTTCTGTGCTCTC+CGG 0.362058 7.3:-53472168 MS.gene30437:CDS
ACTTGCCTACTTTGACTTGT+TGG 0.369747 7.3:+53470113 None:intergenic
CCTTGCTTGTCTTACGTCAA+TGG 0.370001 7.3:-53472129 MS.gene30437:CDS
TTGTTTCTTCTGTGCTCTCC+GGG 0.381696 7.3:-53472167 MS.gene30437:CDS
CCTTATAAACAAGGCAAAGA+TGG 0.409361 7.3:-53470244 MS.gene30437:CDS
TTATTCTTGCTGGTCATAAA+GGG 0.409548 7.3:+53470310 None:intergenic
TGGCTGTTGGCATGGTAGGC+GGG 0.421223 7.3:-53469892 MS.gene30437:CDS
TTGATTGGATAACAAGTGTT+TGG 0.423243 7.3:+53472344 None:intergenic
TCAAAAGAAATATTGAATCT+TGG 0.427509 7.3:+53470082 None:intergenic
AGAAACAAGCTGAGAGCATA+AGG 0.429286 7.3:+53472182 None:intergenic
AGTGGAACCATACTCTTTGT+TGG 0.431916 7.3:-53469785 MS.gene30437:CDS
AGTAGTCATAAGTTGTTTGA+AGG 0.434567 7.3:+53472071 None:intergenic
AGCACGGTGTTGAGCGATAA+TGG 0.435236 7.3:+53472291 None:intergenic
GTCATAAGTTGTTTGAAGGA+AGG 0.435473 7.3:+53472075 None:intergenic
CAAGTGTTTGGTGATGTTCA+TGG 0.446905 7.3:+53472356 None:intergenic
GAGAAAAGAAGTGAATTTAT+GGG 0.447487 7.3:-53470512 MS.gene30437:CDS
GTCTTACGTCAATGGTGTGT+GGG 0.450358 7.3:-53472121 MS.gene30437:CDS
TCAATTGGAGGGACCGGAGG+GGG 0.451257 7.3:+53469854 None:intergenic
AAGTCAAAGTAGGCAAGTTC+AGG 0.464652 7.3:-53470108 MS.gene30437:CDS
CTCTCCGGGGCTCGCACTAG+TGG 0.464699 7.3:-53472153 MS.gene30437:CDS
TTCATTGAAGTAAATGAAGA+AGG 0.465672 7.3:-53469932 MS.gene30437:CDS
GCGGTGGCTGTTGGCATGGT+AGG 0.466186 7.3:-53469896 MS.gene30437:CDS
TGGGCCGAAAAGAAGACAAA+AGG 0.471958 7.3:-53470493 MS.gene30437:CDS
TTCAAAATCTTCTTCCATGC+GGG 0.473624 7.3:-53470465 MS.gene30437:CDS
AAGGTGGTCAATCCTCTTGA+TGG 0.480370 7.3:-53469761 MS.gene30437:CDS
TGTTCATGGAAACGTTGGTT+AGG 0.481229 7.3:+53472370 None:intergenic
GTGGCTGTTGGCATGGTAGG+CGG 0.495334 7.3:-53469893 MS.gene30437:CDS
TGGTCAGCTACAAAGTCAAT+TGG 0.500762 7.3:+53469839 None:intergenic
AAAGCTGCAGCGGTGGCTGT+TGG 0.507681 7.3:-53469905 MS.gene30437:CDS
CTTATAAACAAGGCAAAGAT+GGG 0.509106 7.3:-53470243 MS.gene30437:CDS
TTGAGTGGGACCCTCGGATC+CGG 0.511726 7.3:+53472254 None:intergenic
AACCATACTCTTTGTTGGAA+AGG 0.525947 7.3:-53469780 MS.gene30437:CDS
ACAAAGTCAATTGGAGGGAC+CGG 0.526884 7.3:+53469848 None:intergenic
GCAAATGCACTATACTTCAA+AGG 0.528381 7.3:-53470412 MS.gene30437:CDS
TTTCTCCAGTCTGAATTCAC+CGG 0.529555 7.3:-53472216 MS.gene30437:CDS
CTTGGTCTTCCTTATAAACA+AGG 0.530839 7.3:-53470253 MS.gene30437:CDS
AGTCAATTGGAGGGACCGGA+GGG 0.531920 7.3:+53469852 None:intergenic
CAGTTCATCAGTTCTTTCGA+TGG 0.537736 7.3:-53470286 MS.gene30437:CDS
GAAAGACTTCTGAAATATGC+CGG 0.537794 7.3:+53469952 None:intergenic
TGCAGCGGTGGCTGTTGGCA+TGG 0.538745 7.3:-53469900 MS.gene30437:CDS
GTCAATTGGAGGGACCGGAG+GGG 0.545085 7.3:+53469853 None:intergenic
CCTTGCCAACAAGTCAAAGT+AGG 0.554486 7.3:-53470118 MS.gene30437:CDS
TCTCAATGGCAAGTCAGTAA+AGG 0.555621 7.3:-53470335 MS.gene30437:CDS
CACTATACTTCAAAGGAGTG+TGG 0.556458 7.3:-53470405 MS.gene30437:CDS
GGTGAATTCAGACTGGAGAA+AGG 0.558446 7.3:+53472218 None:intergenic
GGGCCGAAAAGAAGACAAAA+GGG 0.559915 7.3:-53470492 MS.gene30437:CDS
AGGGCCACTAGTGCGAGCCC+CGG 0.567746 7.3:+53472149 None:intergenic
TATGATCGCTACCGGATCCG+AGG 0.570985 7.3:-53472265 MS.gene30437:CDS
CATACTCTTTGTTGGAAAGG+TGG 0.571116 7.3:-53469777 MS.gene30437:CDS
AGGTGGTCAATCCTCTTGAT+GGG 0.571602 7.3:-53469760 MS.gene30437:CDS
GCATAAGGATTTGAGATCAC+CGG 0.576139 7.3:+53472197 None:intergenic
TGCAGTTGATTTCGTCAACA+AGG 0.577204 7.3:-53472028 MS.gene30437:intron
TGTCTTACGTCAATGGTGTG+TGG 0.580488 7.3:-53472122 MS.gene30437:CDS
TTACTGACTTGCCATTGAGA+AGG 0.583004 7.3:+53470338 None:intergenic
AAGTCAATTGGAGGGACCGG+AGG 0.584759 7.3:+53469851 None:intergenic
ACTATACTTCAAAGGAGTGT+GGG 0.588475 7.3:-53470404 MS.gene30437:CDS
AGGTACGAAAGCTGCAGCGG+TGG 0.596245 7.3:-53469912 MS.gene30437:CDS
GTGCTCAGTATGATCGCTAC+CGG 0.603432 7.3:-53472273 MS.gene30437:CDS
TTCAACAATCACCCATCAAG+AGG 0.605491 7.3:+53469749 None:intergenic
TCAGCTACAAAGTCAATTGG+AGG 0.607657 7.3:+53469842 None:intergenic
GATCACCGGTGAATTCAGAC+TGG 0.608909 7.3:+53472211 None:intergenic
CCTACTTTGACTTGTTGGCA+AGG 0.611772 7.3:+53470118 None:intergenic
ATGGTGATGCAGAATCTCAT+CGG 0.612465 7.3:-53472408 MS.gene30437:CDS
CTTGTTTATAAGGAAGACCA+AGG 0.612910 7.3:+53470254 None:intergenic
GTTTGATACTTCGAAAACAA+AGG 0.618701 7.3:-53470374 MS.gene30437:CDS
CATTGACGTAAGACAAGCAA+GGG 0.620054 7.3:+53472130 None:intergenic
ATGATCGCTACCGGATCCGA+GGG 0.623580 7.3:-53472264 MS.gene30437:CDS
GGTGATGTTCATGGAAACGT+TGG 0.634641 7.3:+53472365 None:intergenic
ATTCAAAATCTTCTTCCATG+CGG 0.634880 7.3:-53470466 MS.gene30437:CDS
TGTTTCTTCTGTGCTCTCCG+GGG 0.647438 7.3:-53472166 MS.gene30437:CDS
CAGCTACAAAGTCAATTGGA+GGG 0.661369 7.3:+53469843 None:intergenic
AGAAGGTACGAAAGCTGCAG+CGG 0.664748 7.3:-53469915 MS.gene30437:CDS
AAGCTGTGAACTGACCCGCA+TGG 0.684890 7.3:+53470451 None:intergenic
GGTAGCGATCATACTGAGCA+CGG 0.692951 7.3:+53472275 None:intergenic
GGTCAGTTCACAGCTTAACG+AGG 0.693418 7.3:-53470444 MS.gene30437:CDS
CCATTGACGTAAGACAAGCA+AGG 0.702901 7.3:+53472129 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATAGAAATATAACA+TGG - chr7.3:53470352-53470371 MS.gene30437:CDS 10.0%
!!! ATATTTTATTTTTTTAGTAG+AGG - chr7.3:53470205-53470224 MS.gene30437:CDS 10.0%
!!! ATTAGTAACAATTTATTTTA+GGG + chr7.3:53470825-53470844 None:intergenic 10.0%
!!! TATTAGTAACAATTTATTTT+AGG + chr7.3:53470826-53470845 None:intergenic 10.0%
!! TAAATTGTTACTAATAATGT+CGG - chr7.3:53470830-53470849 MS.gene30437:intron 15.0%
!!! AAAACTTAAATTTTTCTGTT+TGG + chr7.3:53471026-53471045 None:intergenic 15.0%
!!! AAATCATTTGAATTTTTTCA+TGG + chr7.3:53471581-53471600 None:intergenic 15.0%
!!! AATCATTTGAATTTTTTCAT+GGG + chr7.3:53471580-53471599 None:intergenic 15.0%
!!! TCAAATGATTTATTTTAACA+TGG - chr7.3:53471590-53471609 MS.gene30437:intron 15.0%
!! AAAAATCAATAATGTGACTT+TGG - chr7.3:53471239-53471258 MS.gene30437:intron 20.0%
!! AAAATGGTTATACCAATTAT+AGG + chr7.3:53471351-53471370 None:intergenic 20.0%
!! ACATAAAGTTCTTTACTTAT+AGG + chr7.3:53472191-53472210 None:intergenic 20.0%
!! GAAACAAAGTTATATGTAAA+AGG + chr7.3:53471004-53471023 None:intergenic 20.0%
!! GCTCATTCTATTAAAATAAT+GGG - chr7.3:53470479-53470498 MS.gene30437:CDS 20.0%
!! TAATATGACAACGATAATTA+GGG - chr7.3:53471325-53471344 MS.gene30437:intron 20.0%
!! TCAAAAGAAATATTGAATCT+TGG + chr7.3:53472086-53472105 None:intergenic 20.0%
!! TGCTCATTCTATTAAAATAA+TGG - chr7.3:53470478-53470497 MS.gene30437:CDS 20.0%
!! TTAATATGACAACGATAATT+AGG - chr7.3:53471324-53471343 MS.gene30437:intron 20.0%
!!! CAATCTTTTGAGAAATAAAT+TGG + chr7.3:53470726-53470745 None:intergenic 20.0%
!!! TTTTCAATGCAAAAATTCTT+TGG + chr7.3:53470698-53470717 None:intergenic 20.0%
! AAAAGGATTGATCTAGAAAT+TGG + chr7.3:53470987-53471006 None:intergenic 25.0%
! ACTTGTATGTAATTGTACTA+TGG + chr7.3:53470895-53470914 None:intergenic 25.0%
! AGTAAAGAACTTTATGTTTC+CGG - chr7.3:53472194-53472213 MS.gene30437:CDS 25.0%
! ATTGATCTAGAAATTGGTAA+GGG + chr7.3:53470981-53471000 None:intergenic 25.0%
! CTCTGATCAGAAATAAAAAA+GGG + chr7.3:53472352-53472371 None:intergenic 25.0%
! CTTGTATGTAATTGTACTAT+GGG + chr7.3:53470894-53470913 None:intergenic 25.0%
! GAATGAGCATATTGATATTT+AGG + chr7.3:53470622-53470641 None:intergenic 25.0%
! GAGAAAAGAAGTGAATTTAT+GGG - chr7.3:53471653-53471672 MS.gene30437:intron 25.0%
! GATTGGATTGTAATGTTAAT+AGG + chr7.3:53470950-53470969 None:intergenic 25.0%
! TCTCTGATCAGAAATAAAAA+AGG + chr7.3:53472353-53472372 None:intergenic 25.0%
! TGAGAAAAGAAGTGAATTTA+TGG - chr7.3:53471652-53471671 MS.gene30437:intron 25.0%
! TTCATTGAAGTAAATGAAGA+AGG - chr7.3:53472233-53472252 MS.gene30437:CDS 25.0%
! TTCTCAATTGCTTGATTAAT+TGG - chr7.3:53470585-53470604 MS.gene30437:intron 25.0%
!! GTTAATTTTGCAATTGATAC+TGG - chr7.3:53471612-53471631 MS.gene30437:intron 25.0%
!! TTGACTTTACCTTTTTCTAT+GGG - chr7.3:53472140-53472159 MS.gene30437:CDS 25.0%
!!! ACAAGTTTGTTTTTCACAAT+TGG + chr7.3:53471183-53471202 None:intergenic 25.0%
!!! ATTGACTTTACCTTTTTCTA+TGG - chr7.3:53472139-53472158 MS.gene30437:CDS 25.0%
!!! CTTTTCTTTGAGATTTTGAT+TGG + chr7.3:53469839-53469858 None:intergenic 25.0%
!!! TCATGCTTTTATTTGTGTTA+GGG - chr7.3:53470163-53470182 MS.gene30437:CDS 25.0%
AATAAACCTATCCAGCTAAT+TGG + chr7.3:53471455-53471474 None:intergenic 30.0%
AATGAAAGACAGCACAAAAA+CGG + chr7.3:53470305-53470324 None:intergenic 30.0%
ACATATTGAGCATATTGAAC+AGG + chr7.3:53470513-53470532 None:intergenic 30.0%
ACTCGTTAGATTTAACATGA+TGG + chr7.3:53470452-53470471 None:intergenic 30.0%
ACTTGTGTATATATAGTGCA+AGG - chr7.3:53471197-53471216 MS.gene30437:intron 30.0%
AGGTTTAATGTCTCAGAAAA+TGG + chr7.3:53471367-53471386 None:intergenic 30.0%
AGTAGTCATAAGTTGTTTGA+AGG + chr7.3:53470097-53470116 None:intergenic 30.0%
AGTCCATTATTGTGCTTTAA+AGG + chr7.3:53470921-53470940 None:intergenic 30.0%
ATTCAAAATCTTCTTCCATG+CGG - chr7.3:53471699-53471718 MS.gene30437:intron 30.0%
CTTATAAACAAGGCAAAGAT+GGG - chr7.3:53471922-53471941 MS.gene30437:intron 30.0%
GATTGATCTAGAAATTGGTA+AGG + chr7.3:53470982-53471001 None:intergenic 30.0%
GTTCAATATGCTCAATATGT+AGG - chr7.3:53470513-53470532 MS.gene30437:CDS 30.0%
GTTTGATACTTCGAAAACAA+AGG - chr7.3:53471791-53471810 MS.gene30437:intron 30.0%
TAATCAAGCAATTGAGAAAG+AGG + chr7.3:53470583-53470602 None:intergenic 30.0%
TATGGGAGATTTGACAAAAA+TGG - chr7.3:53472157-53472176 MS.gene30437:CDS 30.0%
TCAACACAAAGTTTGTAAGT+CGG + chr7.3:53470550-53470569 None:intergenic 30.0%
TCTGAGTTGCTAAAGAAATT+AGG - chr7.3:53472116-53472135 MS.gene30437:CDS 30.0%
TGATCAGAAATAAAAAAGGG+TGG + chr7.3:53472349-53472368 None:intergenic 30.0%
TTATTCTTGCTGGTCATAAA+GGG + chr7.3:53471858-53471877 None:intergenic 30.0%
TTGATTGGATAACAAGTGTT+TGG + chr7.3:53469824-53469843 None:intergenic 30.0%
TTGTATTCAAAATGAGTCCA+AGG + chr7.3:53471387-53471406 None:intergenic 30.0%
TTTATTCTTGCTGGTCATAA+AGG + chr7.3:53471859-53471878 None:intergenic 30.0%
! ATTTTTGAACAGACCATGAT+AGG - chr7.3:53470421-53470440 MS.gene30437:CDS 30.0%
!! CTCATGCTTTTATTTGTGTT+AGG - chr7.3:53470162-53470181 MS.gene30437:CDS 30.0%
!! TATGATTTTGACCTTCTCAA+TGG - chr7.3:53471816-53471835 MS.gene30437:intron 30.0%
!!! CATAAGTTAGTTTTCAGTGT+TGG - chr7.3:53471115-53471134 MS.gene30437:intron 30.0%
!!! TTTTCTGAGACATTAAACCT+TGG - chr7.3:53471367-53471386 MS.gene30437:intron 30.0%
AAACCTTAACATGTGCTCTT+AGG - chr7.3:53470783-53470802 MS.gene30437:intron 35.0%
AACCATACTCTTTGTTGGAA+AGG - chr7.3:53472385-53472404 MS.gene30437:CDS 35.0%
CCATATACCAAAAAGAATGC+AGG - chr7.3:53471052-53471071 MS.gene30437:intron 35.0%
CCTTATAAACAAGGCAAAGA+TGG - chr7.3:53471921-53471940 MS.gene30437:intron 35.0%
CGATAATTAGGGCCTATAAT+TGG - chr7.3:53471336-53471355 MS.gene30437:intron 35.0%
CTATGGGTTTAAGCTCAATA+TGG + chr7.3:53470878-53470897 None:intergenic 35.0%
CTTGTTTATAAGGAAGACCA+AGG + chr7.3:53471914-53471933 None:intergenic 35.0%
GATGAACTGTTTATTCTTGC+TGG + chr7.3:53471868-53471887 None:intergenic 35.0%
GCAAATGCACTATACTTCAA+AGG - chr7.3:53471753-53471772 MS.gene30437:intron 35.0%
GGATCAATAAACCTAACTAC+TGG - chr7.3:53471136-53471155 MS.gene30437:intron 35.0%
GTCAAATCTCCCATAGAAAA+AGG + chr7.3:53472152-53472171 None:intergenic 35.0%
GTCATAAGTTGTTTGAAGGA+AGG + chr7.3:53470093-53470112 None:intergenic 35.0%
TACCACTTGTTTGAAAACTG+TGG - chr7.3:53471269-53471288 MS.gene30437:intron 35.0%
TATCTTAAGATGTGCCCTAA+GGG + chr7.3:53470675-53470694 None:intergenic 35.0%
TCTCACTTTATCCAGTAGTT+AGG + chr7.3:53471150-53471169 None:intergenic 35.0%
TTCAAAATCTTCTTCCATGC+GGG - chr7.3:53471700-53471719 MS.gene30437:intron 35.0%
TTCTTCCTGACGAAAAAGAT+GGG - chr7.3:53471967-53471986 MS.gene30437:intron 35.0%
TTGTGCTGTCTTTCATTCAT+AGG - chr7.3:53470308-53470327 MS.gene30437:CDS 35.0%
TTTCTTCCTGACGAAAAAGA+TGG - chr7.3:53471966-53471985 MS.gene30437:intron 35.0%
! AACCACAGTTTTCAAACAAG+TGG + chr7.3:53471274-53471293 None:intergenic 35.0%
! AAGCCCTTTTGTCTTCTTTT+CGG + chr7.3:53471679-53471698 None:intergenic 35.0%
! ACTATACTTCAAAGGAGTGT+GGG - chr7.3:53471761-53471780 MS.gene30437:intron 35.0%
! AGCTTCTGATTCTCAGTTTT+TGG - chr7.3:53472013-53472032 MS.gene30437:intron 35.0%
! CTGATCAGAGAAGATTTTAG+TGG - chr7.3:53472362-53472381 MS.gene30437:CDS 35.0%
! CTTGGTCTTCCTTATAAACA+AGG - chr7.3:53471912-53471931 MS.gene30437:intron 35.0%
! GCAAAATGAAAGCATGGAAA+GGG + chr7.3:53471089-53471108 None:intergenic 35.0%
!! CCATCTTTGCCTTGTTTATA+AGG + chr7.3:53471924-53471943 None:intergenic 35.0%
!! CCTGCATTCTTTTTGGTATA+TGG + chr7.3:53471055-53471074 None:intergenic 35.0%
!! CTGATTCTCAGTTTTTGGAA+CGG - chr7.3:53472018-53472037 MS.gene30437:intron 35.0%
!! GAAAGACTTCTGAAATATGC+CGG + chr7.3:53472216-53472235 None:intergenic 35.0%
!! GTGCCTTTAAAGCACAATAA+TGG - chr7.3:53470915-53470934 MS.gene30437:intron 35.0%
!! TGCAATTGATACTGGTTTGA+AGG - chr7.3:53471620-53471639 MS.gene30437:intron 35.0%
!!! GAGAGAAGTTGTTTTTGAGT+GGG + chr7.3:53469928-53469947 None:intergenic 35.0%
!!! TTCGATGGTTTTAAAGTCCT+TGG - chr7.3:53471894-53471913 MS.gene30437:intron 35.0%
AAGTCAAAGTAGGCAAGTTC+AGG - chr7.3:53472057-53472076 MS.gene30437:CDS 40.0%
AGAAACTCACACACAACTTC+TGG - chr7.3:53470236-53470255 MS.gene30437:CDS 40.0%
AGTGGAACCATACTCTTTGT+TGG - chr7.3:53472380-53472399 MS.gene30437:CDS 40.0%
CACCTTTCCAACAAAGAGTA+TGG + chr7.3:53472390-53472409 None:intergenic 40.0%
CACTATACTTCAAAGGAGTG+TGG - chr7.3:53471760-53471779 MS.gene30437:intron 40.0%
CAGCTAATTGGCAAGACATT+AGG + chr7.3:53471443-53471462 None:intergenic 40.0%
CAGCTACAAAGTCAATTGGA+GGG + chr7.3:53472325-53472344 None:intergenic 40.0%
CAGTTCATCAGTTCTTTCGA+TGG - chr7.3:53471879-53471898 MS.gene30437:intron 40.0%
CATACTCTTTGTTGGAAAGG+TGG - chr7.3:53472388-53472407 MS.gene30437:CDS 40.0%
CATTGACGTAAGACAAGCAA+GGG + chr7.3:53470038-53470057 None:intergenic 40.0%
CTAATGTCTTGCCAATTAGC+TGG - chr7.3:53471441-53471460 MS.gene30437:intron 40.0%
GGGAGATTTGACAAAAATGG+TGG - chr7.3:53472160-53472179 MS.gene30437:CDS 40.0%
GTATCTTAAGATGTGCCCTA+AGG + chr7.3:53470676-53470695 None:intergenic 40.0%
TCAGCTACAAAGTCAATTGG+AGG + chr7.3:53472326-53472345 None:intergenic 40.0%
TCTCAATGGCAAGTCAGTAA+AGG - chr7.3:53471830-53471849 MS.gene30437:intron 40.0%
TGGTAAGGGAGAAACATGAT+TGG + chr7.3:53470967-53470986 None:intergenic 40.0%
TGGTCAGCTACAAAGTCAAT+TGG + chr7.3:53472329-53472348 None:intergenic 40.0%
TTGCTTCCATACACCACATA+TGG + chr7.3:53471505-53471524 None:intergenic 40.0%
TTTCTCCAGTCTGAATTCAC+CGG - chr7.3:53469949-53469968 MS.gene30437:CDS 40.0%
! AAATGCTAACTTGTGCCCTT+AGG - chr7.3:53470657-53470676 MS.gene30437:intron 40.0%
! AATGCTAACTTGTGCCCTTA+GGG - chr7.3:53470658-53470677 MS.gene30437:intron 40.0%
! AGAAACAAGCTGAGAGCATA+AGG + chr7.3:53469986-53470005 None:intergenic 40.0%
! ATGGTGATGCAGAATCTCAT+CGG - chr7.3:53469757-53469776 MS.gene30437:CDS 40.0%
! CGCAAAATGAAAGCATGGAA+AGG + chr7.3:53471090-53471109 None:intergenic 40.0%
! GCATAAGGATTTGAGATCAC+CGG + chr7.3:53469971-53469990 None:intergenic 40.0%
! GTCTGAACCTGCATTCTTTT+TGG + chr7.3:53471062-53471081 None:intergenic 40.0%
! TCCATGCTTTCATTTTGCGT+GGG - chr7.3:53471091-53471110 MS.gene30437:intron 40.0%
! TGCAGTTGATTTCGTCAACA+AGG - chr7.3:53470137-53470156 MS.gene30437:CDS 40.0%
! TGTCCTAAGAGCACATGTTA+AGG + chr7.3:53470789-53470808 None:intergenic 40.0%
! TGTTCATGGAAACGTTGGTT+AGG + chr7.3:53469798-53469817 None:intergenic 40.0%
! TTCCATGCTTTCATTTTGCG+TGG - chr7.3:53471090-53471109 MS.gene30437:intron 40.0%
!! ACTTGCCTACTTTGACTTGT+TGG + chr7.3:53472055-53472074 None:intergenic 40.0%
!! CAAGTGTTTGGTGATGTTCA+TGG + chr7.3:53469812-53469831 None:intergenic 40.0%
!! CATGATGGATCAACCTATCA+TGG + chr7.3:53470437-53470456 None:intergenic 40.0%
!! TTACTGACTTGCCATTGAGA+AGG + chr7.3:53471830-53471849 None:intergenic 40.0%
!!! GGAGAGAAGTTGTTTTTGAG+TGG + chr7.3:53469929-53469948 None:intergenic 40.0%
AAGGTGGTCAATCCTCTTGA+TGG - chr7.3:53472404-53472423 MS.gene30437:CDS 45.0%
ACAAAGTCAATTGGAGGGAC+CGG + chr7.3:53472320-53472339 None:intergenic 45.0%
AGGTGGTCAATCCTCTTGAT+GGG - chr7.3:53472405-53472424 MS.gene30437:CDS 45.0%
CACCACATATGGAGAGAGTT+AGG + chr7.3:53471494-53471513 None:intergenic 45.0%
CACCTAACTCTCTCCATATG+TGG - chr7.3:53471489-53471508 MS.gene30437:intron 45.0%
CCATTGACGTAAGACAAGCA+AGG + chr7.3:53470039-53470058 None:intergenic 45.0%
CCTTGCCAACAAGTCAAAGT+AGG - chr7.3:53472047-53472066 MS.gene30437:CDS 45.0%
CCTTGCTTGTCTTACGTCAA+TGG - chr7.3:53470036-53470055 MS.gene30437:CDS 45.0%
CTCTCTCCATATGTGGTGTA+TGG - chr7.3:53471496-53471515 MS.gene30437:intron 45.0%
GGGCCGAAAAGAAGACAAAA+GGG - chr7.3:53471673-53471692 MS.gene30437:intron 45.0%
GGTGAATTCAGACTGGAGAA+AGG + chr7.3:53469950-53469969 None:intergenic 45.0%
GGTGATGTTCATGGAAACGT+TGG + chr7.3:53469803-53469822 None:intergenic 45.0%
GTCTTACGTCAATGGTGTGT+GGG - chr7.3:53470044-53470063 MS.gene30437:CDS 45.0%
GTCTTGCCAATTAGCTGGAT+AGG - chr7.3:53471446-53471465 MS.gene30437:intron 45.0%
TCCCACGCAAAATGAAAGCA+TGG + chr7.3:53471095-53471114 None:intergenic 45.0%
TGGGCCGAAAAGAAGACAAA+AGG - chr7.3:53471672-53471691 MS.gene30437:intron 45.0%
TGTCTTACGTCAATGGTGTG+TGG - chr7.3:53470043-53470062 MS.gene30437:CDS 45.0%
! CTTGTTTCTTCTGTGCTCTC+CGG - chr7.3:53469997-53470016 MS.gene30437:CDS 45.0%
! TTGTTTCTTCTGTGCTCTCC+GGG - chr7.3:53469998-53470017 MS.gene30437:CDS 45.0%
!! CCTACTTTGACTTGTTGGCA+AGG + chr7.3:53472050-53472069 None:intergenic 45.0%
!! GACAACCCATCTTTTTCGTC+AGG + chr7.3:53471975-53471994 None:intergenic 45.0%
!!! TTGTTTTTGAGTGGGACCCT+CGG + chr7.3:53469920-53469939 None:intergenic 45.0%
GATCACCGGTGAATTCAGAC+TGG + chr7.3:53469957-53469976 None:intergenic 50.0%
GGTAGCGATCATACTGAGCA+CGG + chr7.3:53469893-53469912 None:intergenic 50.0%
GGTCAGTTCACAGCTTAACG+AGG - chr7.3:53471721-53471740 MS.gene30437:intron 50.0%
GTGCTCAGTATGATCGCTAC+CGG - chr7.3:53469892-53469911 MS.gene30437:CDS 50.0%
GTGGTTAGTAGCACATGCGA+GGG - chr7.3:53471288-53471307 MS.gene30437:intron 50.0%
TGCTCTGTATAAACCCCCTC+CGG - chr7.3:53472298-53472317 MS.gene30437:CDS 50.0%
TGTGGTTAGTAGCACATGCG+AGG - chr7.3:53471287-53471306 MS.gene30437:intron 50.0%
TGTTTCTTCTGTGCTCTCCG+GGG - chr7.3:53469999-53470018 MS.gene30437:CDS 50.0%
! AGAAGGTACGAAAGCTGCAG+CGG - chr7.3:53472250-53472269 MS.gene30437:CDS 50.0%
! AGCACGGTGTTGAGCGATAA+TGG + chr7.3:53469877-53469896 None:intergenic 50.0%
! CACAACTTCTGGTGTTAGCG+TGG - chr7.3:53470247-53470266 MS.gene30437:CDS 50.0%
!! CGCAAGTGAGTTTGATGACG+AGG + chr7.3:53471410-53471429 None:intergenic 50.0%
AAGCTGTGAACTGACCCGCA+TGG + chr7.3:53471717-53471736 None:intergenic 55.0%
AAGTCAATTGGAGGGACCGG+AGG + chr7.3:53472317-53472336 None:intergenic 55.0%
AGTCAATTGGAGGGACCGGA+GGG + chr7.3:53472316-53472335 None:intergenic 55.0%
ATGATCGCTACCGGATCCGA+GGG - chr7.3:53469901-53469920 MS.gene30437:CDS 55.0%
TATGATCGCTACCGGATCCG+AGG - chr7.3:53469900-53469919 MS.gene30437:CDS 55.0%
AAAGCTGCAGCGGTGGCTGT+TGG - chr7.3:53472260-53472279 MS.gene30437:CDS 60.0%
AGGTACGAAAGCTGCAGCGG+TGG - chr7.3:53472253-53472272 MS.gene30437:CDS 60.0%
GTCAATTGGAGGGACCGGAG+GGG + chr7.3:53472315-53472334 None:intergenic 60.0%
GTGGCTGTTGGCATGGTAGG+CGG - chr7.3:53472272-53472291 MS.gene30437:CDS 60.0%
TCAATTGGAGGGACCGGAGG+GGG + chr7.3:53472314-53472333 None:intergenic 60.0%
TGGCTGTTGGCATGGTAGGC+GGG - chr7.3:53472273-53472292 MS.gene30437:CDS 60.0%
TTGAGTGGGACCCTCGGATC+CGG + chr7.3:53469914-53469933 None:intergenic 60.0%
GCGGTGGCTGTTGGCATGGT+AGG - chr7.3:53472269-53472288 MS.gene30437:CDS 65.0%
TGCAGCGGTGGCTGTTGGCA+TGG - chr7.3:53472265-53472284 MS.gene30437:CDS 65.0%
AGGGCCACTAGTGCGAGCCC+CGG + chr7.3:53470019-53470038 None:intergenic 70.0%
CTCTCCGGGGCTCGCACTAG+TGG - chr7.3:53470012-53470031 MS.gene30437:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 53469757 53472430 53469757 ID=MS.gene30437
chr7.3 mRNA 53469757 53472430 53469757 ID=MS.gene30437.t1;Parent=MS.gene30437
chr7.3 exon 53472029 53472430 53472029 ID=MS.gene30437.t1.exon1;Parent=MS.gene30437.t1
chr7.3 CDS 53472029 53472430 53472029 ID=cds.MS.gene30437.t1;Parent=MS.gene30437.t1
chr7.3 exon 53469757 53470545 53469757 ID=MS.gene30437.t1.exon2;Parent=MS.gene30437.t1
chr7.3 CDS 53469757 53470545 53469757 ID=cds.MS.gene30437.t1;Parent=MS.gene30437.t1
Gene Sequence

>MS.gene30437

ATGGTGATGCAGAATCTCATCGGAAAATCATTCACAAACCTAACCAACGTTTCCATGAACATCACCAAACACTTGTTATCCAATCAAAATCTCAAAGAAAAGAACGTTGTGTTTTCACCATTATCGCTCAACACCGTGCTCAGTATGATCGCTACCGGATCCGAGGGTCCCACTCAAAAACAACTTCTCTCCTTTCTCCAGTCTGAATTCACCGGTGATCTCAAATCCTTATGCTCTCAGCTTGTTTCTTCTGTGCTCTCCGGGGCTCGCACTAGTGGCCCTTGCTTGTCTTACGTCAATGGTGTGTGGGTTGAACAGACAATTCTTCTTCAACCTTCCTTCAAACAACTTATGACTACTGATTTCAAAGCTGCTTTTGCTGCAGTTGATTTCGTCAACAAGGTACTCATGCTTTTATTTGTGTTAGGGTTTGAAGTTTAGTGTTATCATATTTTATTTTTTTAGTAGAGGAAATGATAAGAAACTCACACACAACTTCTGGTGTTAGCGTGGTGTCTGCGTGTCTGTGACGTGCTGTTTTGTGTCCGTTTTTGTGCTGTCTTTCATTCATAGGTGTTAAAACAATTATTTATGAATTATTATAGAAATATAACATGGTCAATTGTTATTAAAACACAAATCATCGATGAATAGTCTGATTGTTATTTTTGAACAGACCATGATAGGTTGATCCATCATGTTAAATCTAACGAGTTCAATATGCTCATTCTATTAAAATAATGTTAAATCTAACCTGTTCAATATGCTCAATATGTAGGTCTGATTGTTACCGACTTACAAACTTTGTGTTGAAGAATTTAATCCTCTTTCTCAATTGCTTGATTAATTGGTTAAAGAGTGACCTAAATATCAATATGCTCATTCTATTAAAATAATGGGAAATGCTAACTTGTGCCCTTAGGGCACATCTTAAGATACCAAAGAATTTTTGCATTGAAAATTGTGCCAATTTATTTCTCAAAAGATTGAAATTTAATTTTTCTCAATAAATACTTTCTTTTTTAGAAACCTTAACATGTGCTCTTAGGACAGAAGTTAACATGACCCTAAAATAAATTGTTACTAATAATGTCGGTTAGTACTATTTTTTTTCATAGCCATATTGAGCTTAAACCCATAGTACAATTACATACAAGTGTGCCTTTAAAGCACAATAATGGACTGATCTACCTATTAACATTACAATCCAATCATGTTTCTCCCTTACCAATTTCTAGATCAATCCTTTTACATATAACTTTGTTTCCAAACAGAAAAATTTAAGTTTTACAATTCCATATACCAAAAAGAATGCAGGTTCAGACTTCACCCTTTCCATGCTTTCATTTTGCGTGGGACATAAGTTAGTTTTCAGTGTTGGATCAATAAACCTAACTACTGGATAAAGTGAGATATTATTGATCCAATTGTGAAAAACAAACTTGTGTATATATAGTGCAAGGCTATCTTGTGCACATTAGAAAAAATCAATAATGTGACTTTGGAATGTTTTACCACTTGTTTGAAAACTGTGGTTAGTAGCACATGCGAGGGAGTGACTTTAGTATTAATATGACAACGATAATTAGGGCCTATAATTGGTATAACCATTTTCTGAGACATTAAACCTTGGACTCATTTTGAATACAACCTCGTCATCAAACTCACTTGCGCTAAAGATTACCTAATGTCTTGCCAATTAGCTGGATAGGTTTATTTTGCAACTCTGTTTCACCTAACTCTCTCCATATGTGGTGTATGGAAGCAACAAAATCAATGCGAAAAATATCAACAAAATGTTTAATTCTTCTGTTATAATGCCCATGAAAAAATTCAAATGATTTATTTTAACATGGTTAATTTTGCAATTGATACTGGTTTGAAGGCTGATGAAGTGAGAAAAGAAGTGAATTTATGGGCCGAAAAGAAGACAAAAGGGCTTATTCAAAATCTTCTTCCATGCGGGTCAGTTCACAGCTTAACGAGGCTAATCTTTGCAAATGCACTATACTTCAAAGGAGTGTGGGAACAACAGTTTGATACTTCGAAAACAAAGGACTATGATTTTGACCTTCTCAATGGCAAGTCAGTAAAGGTTCCCTTTATGACCAGCAAGAATAAACAGTTCATCAGTTCTTTCGATGGTTTTAAAGTCCTTGGTCTTCCTTATAAACAAGGCAAAGATGGGCGTGCATTCTCTATTTACTTTTTTCTTCCTGACGAAAAAGATGGGTTGTCAGCTTTGATTGATAAAGTAGCTTCTGATTCTCAGTTTTTGGAACGGATTCTTCCTTGCCAACAAGTCAAAGTAGGCAAGTTCAGGATTCCAAGATTCAATATTTCTTTTGAGATTGAAGCATCTGAGTTGCTAAAGAAATTAGGATTGACTTTACCTTTTTCTATGGGAGATTTGACAAAAATGGTGGATTCTCCTATAAGTAAAGAACTTTATGTTTCCGGCATATTTCAGAAGTCTTTCATTGAAGTAAATGAAGAAGGTACGAAAGCTGCAGCGGTGGCTGTTGGCATGGTAGGCGGGTGTGCTCTGTATAAACCCCCTCCGGTCCCTCCAATTGACTTTGTAGCTGACCACCCTTTTTTATTTCTGATCAGAGAAGATTTTAGTGGAACCATACTCTTTGTTGGAAAGGTGGTCAATCCTCTTGATGGGTGA

Protein sequence

>MS.gene30437.t1

MVMQNLIGKSFTNLTNVSMNITKHLLSNQNLKEKNVVFSPLSLNTVLSMIATGSEGPTQKQLLSFLQSEFTGDLKSLCSQLVSSVLSGARTSGPCLSYVNGVWVEQTILLQPSFKQLMTTDFKAAFAAVDFVNKADEVRKEVNLWAEKKTKGLIQNLLPCGSVHSLTRLIFANALYFKGVWEQQFDTSKTKDYDFDLLNGKSVKVPFMTSKNKQFISSFDGFKVLGLPYKQGKDGRAFSIYFFLPDEKDGLSALIDKVASDSQFLERILPCQQVKVGKFRIPRFNISFEIEASELLKKLGLTLPFSMGDLTKMVDSPISKELYVSGIFQKSFIEVNEEGTKAAAVAVGMVGGCALYKPPPVPPIDFVADHPFLFLIREDFSGTILFVGKVVNPLDG