Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30450.t1 | XP_013448414.1 | 88.1 | 396 | 47 | 0 | 1 | 396 | 7 | 402 | 2.40E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30450.t1 | Q9S7T8 | 53.2 | 391 | 178 | 4 | 6 | 394 | 3 | 390 | 3.5e-110 | 399.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30450.t1 | A0A072TZ50 | 88.1 | 396 | 47 | 0 | 1 | 396 | 7 | 402 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene30450 | PPI |
| MS.gene031697 | MS.gene30450 | PPI |
| MS.gene30450 | MS.gene045585 | PPI |
| MS.gene30450 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene30450 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30450.t1 | MTR_7g451890 | 88.636 | 396 | 45 | 0 | 1 | 396 | 7 | 402 | 0.0 | 689 |
| MS.gene30450.t1 | MTR_7g047780 | 88.131 | 396 | 47 | 0 | 1 | 396 | 7 | 402 | 0.0 | 683 |
| MS.gene30450.t1 | MTR_7g050750 | 85.859 | 396 | 56 | 0 | 1 | 396 | 1 | 396 | 0.0 | 670 |
| MS.gene30450.t1 | MTR_7g050810 | 84.010 | 394 | 63 | 0 | 3 | 396 | 11 | 404 | 0.0 | 656 |
| MS.gene30450.t1 | MTR_3g101180 | 64.987 | 397 | 133 | 2 | 4 | 394 | 2 | 398 | 1.07e-180 | 508 |
| MS.gene30450.t1 | MTR_8g461160 | 66.495 | 388 | 130 | 0 | 8 | 395 | 6 | 393 | 6.40e-177 | 498 |
| MS.gene30450.t1 | MTR_7g050830 | 78.370 | 319 | 38 | 2 | 3 | 301 | 11 | 318 | 3.72e-175 | 491 |
| MS.gene30450.t1 | MTR_3g101010 | 65.039 | 389 | 132 | 2 | 8 | 396 | 5 | 389 | 3.02e-173 | 489 |
| MS.gene30450.t1 | MTR_3g101130 | 62.211 | 389 | 142 | 2 | 8 | 396 | 6 | 389 | 9.96e-168 | 475 |
| MS.gene30450.t1 | MTR_4g045707 | 61.697 | 389 | 143 | 3 | 8 | 396 | 6 | 388 | 1.62e-167 | 474 |
| MS.gene30450.t1 | MTR_3g018740 | 62.087 | 393 | 138 | 4 | 6 | 395 | 3 | 387 | 2.43e-166 | 471 |
| MS.gene30450.t1 | MTR_3g101030 | 58.396 | 399 | 146 | 3 | 14 | 396 | 35 | 429 | 5.67e-159 | 454 |
| MS.gene30450.t1 | MTR_8g027395 | 59.079 | 391 | 152 | 2 | 6 | 396 | 15 | 397 | 6.46e-158 | 450 |
| MS.gene30450.t1 | MTR_3g048000 | 59.897 | 389 | 127 | 5 | 9 | 394 | 28 | 390 | 4.52e-157 | 448 |
| MS.gene30450.t1 | MTR_4g088525 | 60.490 | 367 | 139 | 1 | 28 | 394 | 7 | 367 | 3.46e-155 | 442 |
| MS.gene30450.t1 | MTR_2g046030 | 56.456 | 395 | 157 | 5 | 6 | 395 | 3 | 387 | 1.95e-148 | 426 |
| MS.gene30450.t1 | MTR_2g045980 | 56.203 | 395 | 158 | 5 | 6 | 395 | 3 | 387 | 8.05e-148 | 424 |
| MS.gene30450.t1 | MTR_8g027420 | 55.499 | 391 | 155 | 4 | 6 | 396 | 4 | 375 | 7.22e-145 | 416 |
| MS.gene30450.t1 | MTR_3g101050 | 59.173 | 387 | 131 | 6 | 12 | 394 | 33 | 396 | 2.99e-144 | 416 |
| MS.gene30450.t1 | MTR_3g101200 | 55.584 | 394 | 146 | 5 | 2 | 394 | 25 | 390 | 1.94e-138 | 400 |
| MS.gene30450.t1 | MTR_4g088535 | 55.844 | 385 | 144 | 4 | 8 | 391 | 7 | 366 | 1.85e-136 | 395 |
| MS.gene30450.t1 | MTR_3g015620 | 54.937 | 395 | 150 | 5 | 3 | 395 | 11 | 379 | 1.67e-135 | 392 |
| MS.gene30450.t1 | MTR_3g102920 | 53.093 | 388 | 138 | 6 | 11 | 394 | 61 | 408 | 7.16e-129 | 377 |
| MS.gene30450.t1 | MTR_3g101190 | 53.406 | 367 | 102 | 3 | 32 | 396 | 13 | 312 | 2.64e-127 | 369 |
| MS.gene30450.t1 | MTR_3g100995 | 61.328 | 256 | 94 | 3 | 141 | 396 | 14 | 264 | 5.45e-110 | 323 |
| MS.gene30450.t1 | MTR_3g018747 | 61.977 | 263 | 82 | 4 | 134 | 395 | 9 | 254 | 2.99e-102 | 303 |
| MS.gene30450.t1 | MTR_3g100010 | 50.157 | 319 | 111 | 2 | 30 | 315 | 37 | 340 | 1.27e-100 | 302 |
| MS.gene30450.t1 | MTR_3g015760 | 59.316 | 263 | 101 | 4 | 134 | 395 | 23 | 280 | 1.73e-96 | 290 |
| MS.gene30450.t1 | MTR_3g114310 | 40.263 | 380 | 205 | 10 | 32 | 396 | 38 | 410 | 1.31e-81 | 256 |
| MS.gene30450.t1 | MTR_3g111160 | 59.821 | 224 | 84 | 4 | 175 | 396 | 1 | 220 | 5.40e-81 | 248 |
| MS.gene30450.t1 | MTR_3g100520 | 57.589 | 224 | 78 | 3 | 175 | 396 | 1 | 209 | 1.57e-80 | 246 |
| MS.gene30450.t1 | MTR_3g101110 | 55.508 | 236 | 77 | 3 | 137 | 370 | 71 | 280 | 7.08e-76 | 237 |
| MS.gene30450.t1 | MTR_2g046410 | 56.667 | 210 | 81 | 3 | 191 | 395 | 144 | 348 | 8.76e-74 | 234 |
| MS.gene30450.t1 | MTR_3g099970 | 59.184 | 196 | 63 | 2 | 134 | 329 | 20 | 198 | 3.14e-73 | 227 |
| MS.gene30450.t1 | MTR_3g101150 | 64.557 | 158 | 52 | 2 | 240 | 394 | 1 | 157 | 2.39e-64 | 203 |
| MS.gene30450.t1 | MTR_3g111150 | 53.073 | 179 | 58 | 3 | 10 | 188 | 1 | 153 | 1.09e-55 | 181 |
| MS.gene30450.t1 | MTR_3g101020 | 50.265 | 189 | 65 | 2 | 208 | 396 | 1 | 160 | 1.61e-55 | 180 |
| MS.gene30450.t1 | MTR_3g102870 | 55.414 | 157 | 70 | 0 | 197 | 353 | 1 | 157 | 6.90e-55 | 179 |
| MS.gene30450.t1 | MTR_3g100990 | 57.031 | 128 | 53 | 1 | 8 | 135 | 5 | 130 | 5.01e-38 | 143 |
| MS.gene30450.t1 | MTR_3g101140 | 51.456 | 103 | 49 | 1 | 294 | 396 | 15 | 116 | 3.28e-23 | 94.0 |
| MS.gene30450.t1 | MTR_4g093550 | 51.136 | 88 | 41 | 1 | 6 | 93 | 4 | 89 | 1.36e-17 | 77.8 |
| MS.gene30450.t1 | MTR_6g046890 | 55.224 | 67 | 30 | 0 | 25 | 91 | 14 | 80 | 5.40e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30450.t1 | AT1G47710 | 54.124 | 388 | 171 | 5 | 9 | 394 | 8 | 390 | 4.33e-141 | 407 |
| MS.gene30450.t1 | AT1G47710 | 54.124 | 388 | 171 | 5 | 9 | 394 | 35 | 417 | 2.58e-140 | 406 |
| MS.gene30450.t1 | AT2G25240 | 46.939 | 392 | 192 | 8 | 6 | 393 | 3 | 382 | 3.39e-116 | 343 |
| MS.gene30450.t1 | AT2G26390 | 45.063 | 395 | 199 | 6 | 6 | 393 | 3 | 386 | 1.32e-115 | 342 |
| MS.gene30450.t1 | AT3G45220 | 43.073 | 397 | 208 | 5 | 6 | 393 | 3 | 390 | 3.05e-113 | 337 |
| MS.gene30450.t1 | AT1G62170 | 44.192 | 396 | 185 | 6 | 6 | 393 | 64 | 431 | 6.11e-109 | 327 |
| MS.gene30450.t1 | AT1G64030 | 45.013 | 391 | 190 | 5 | 6 | 393 | 3 | 371 | 6.39e-109 | 325 |
| MS.gene30450.t1 | AT2G14540 | 44.501 | 391 | 190 | 6 | 6 | 393 | 31 | 397 | 3.37e-102 | 309 |
| MS.gene30450.t1 | AT1G62170 | 40.793 | 429 | 185 | 7 | 6 | 393 | 64 | 464 | 8.87e-102 | 310 |
| MS.gene30450.t1 | AT2G35580 | 45.028 | 362 | 170 | 7 | 38 | 393 | 33 | 371 | 3.36e-98 | 297 |
| MS.gene30450.t1 | AT1G64010 | 44.344 | 221 | 95 | 5 | 175 | 393 | 1 | 195 | 8.02e-59 | 190 |
| MS.gene30450.t1 | AT1G64010 | 44.175 | 206 | 87 | 5 | 190 | 393 | 2 | 181 | 1.01e-51 | 171 |
| MS.gene30450.t1 | AT1G63280 | 57.627 | 118 | 46 | 2 | 131 | 246 | 5 | 120 | 4.83e-38 | 133 |
| MS.gene30450.t1 | AT1G62160 | 41.848 | 184 | 76 | 4 | 214 | 393 | 62 | 218 | 1.04e-33 | 125 |
| MS.gene30450.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 132 | 240 | 29 | 140 | 3.09e-26 | 104 |
| MS.gene30450.t1 | AT1G64020 | 35.043 | 117 | 73 | 3 | 9 | 124 | 6 | 120 | 2.80e-15 | 72.4 |
Find 82 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTAAAGAACTTTATGTTTC+CGG | 0.190548 | 7.4:-51109632 | MS.gene30450:CDS |
| TGAGACAAGAAGTGAATTTA+TGG | 0.191852 | 7.4:-51110174 | MS.gene30450:CDS |
| TCTGAGTTGCTAAAGAAATT+AGG | 0.232348 | 7.4:-51109710 | MS.gene30450:CDS |
| ACATAAAGTTCTTTACTTAT+AGG | 0.236254 | 7.4:+51109638 | None:intergenic |
| CCATCTTTGCCTTGTTTATA+AGG | 0.245159 | 7.4:+51109905 | None:intergenic |
| GTCAAACCTCCCATAGAAAA+AGG | 0.264352 | 7.4:+51109677 | None:intergenic |
| ATCATTCTTGCTGGTCATAA+AGG | 0.270660 | 7.4:+51109970 | None:intergenic |
| TTGCTCTCAGCTTGTTTCTT+CGG | 0.343320 | 7.4:-51111589 | MS.gene30450:CDS |
| CACCTTTCCAACAAAGAGTA+TGG | 0.347373 | 7.4:+51109439 | None:intergenic |
| CAGTTTATCAGTTCGTTTGA+TGG | 0.352307 | 7.4:-51109947 | MS.gene30450:CDS |
| AAGTGGAAGTAGGCAAGTTC+AGG | 0.380295 | 7.4:-51109769 | MS.gene30450:CDS |
| CAAGTGTTTAGTGATGTTCA+TGG | 0.400723 | 7.4:+51111767 | None:intergenic |
| CCTTGCTTGTCTTACGTCAA+TGG | 0.408285 | 7.4:-51111537 | MS.gene30450:CDS |
| CTCTCCGATGGCGCTCCTGC+CGG | 0.414727 | 7.4:-51111564 | MS.gene30450:CDS |
| GATAAACTGATCATTCTTGC+TGG | 0.430849 | 7.4:+51109961 | None:intergenic |
| AGTGGAACCATACTCTTTGT+TGG | 0.431916 | 7.4:-51109446 | MS.gene30450:CDS |
| AGTAGTCATAAGTTGTTTGA+AGG | 0.434567 | 7.4:+51111479 | None:intergenic |
| GTTGTCAGCTTTGATTGATA+AGG | 0.435094 | 7.4:-51109837 | MS.gene30450:CDS |
| GTCATAAGTTGTTTGAAGGA+AGG | 0.435473 | 7.4:+51111483 | None:intergenic |
| AGTGAATTTATGGGCTGAAA+AGG | 0.440578 | 7.4:-51110164 | MS.gene30450:CDS |
| GTCTTACGTCAATGGTGTGT+GGG | 0.450358 | 7.4:-51111529 | MS.gene30450:CDS |
| ACTGGAGGAAGGAGAGAAGT+TGG | 0.456126 | 7.4:+51111640 | None:intergenic |
| GAGACAAGAAGTGAATTTAT+GGG | 0.459874 | 7.4:-51110173 | MS.gene30450:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.465672 | 7.4:-51109593 | MS.gene30450:CDS |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.472940 | 7.4:-51110154 | MS.gene30450:CDS |
| TCATTCTTGCTGGTCATAAA+GGG | 0.472999 | 7.4:+51109971 | None:intergenic |
| AGAAACAAGCTGAGAGCAAA+AGG | 0.476401 | 7.4:+51111593 | None:intergenic |
| AAGGTGGTCAATCCTCTTGA+TGG | 0.480370 | 7.4:-51109422 | MS.gene30450:CDS |
| TGTTCATGGAAACGTTGGTT+AGG | 0.481229 | 7.4:+51111781 | None:intergenic |
| CCTTATAAACAAGGCAAAGA+TGG | 0.484583 | 7.4:-51109905 | MS.gene30450:CDS |
| GTTTCTTCGGTGCTCTCCGA+TGG | 0.498373 | 7.4:-51111576 | MS.gene30450:CDS |
| GTGCTCAGTATGATCGCTAC+TGG | 0.501161 | 7.4:-51111684 | MS.gene30450:CDS |
| TTGGTTCTGTGTGCGACCCT+CGG | 0.502509 | 7.4:+51111659 | None:intergenic |
| TCCACCGGCAGGAGCGCCAT+CGG | 0.508179 | 7.4:+51111560 | None:intergenic |
| TCCGATGGCGCTCCTGCCGG+TGG | 0.511998 | 7.4:-51111561 | MS.gene30450:CDS |
| GCTAATGCACTATATTTCAA+AGG | 0.516256 | 7.4:-51110073 | MS.gene30450:CDS |
| TTAGAAGAAATATTGAACCT+TGG | 0.516307 | 7.4:+51109743 | None:intergenic |
| TCTCAATGGCAACTCAATCA+AGG | 0.516566 | 7.4:-51109996 | MS.gene30450:CDS |
| GACAAGCAAGGTCCACCGGC+AGG | 0.524642 | 7.4:+51111549 | None:intergenic |
| AACCATACTCTTTGTTGGAA+AGG | 0.525947 | 7.4:-51109441 | MS.gene30450:CDS |
| GAATCTTCCTCGTGAAGAAG+TGG | 0.526469 | 7.4:-51109786 | MS.gene30450:CDS |
| TTCCTCCAGTCTGAATCCAC+AGG | 0.528426 | 7.4:-51111627 | MS.gene30450:CDS |
| CTTGGTCTTCCTTATAAACA+AGG | 0.530839 | 7.4:-51109914 | MS.gene30450:CDS |
| GAAAGACTTCTGAAATATGC+CGG | 0.537794 | 7.4:+51109613 | None:intergenic |
| AGCACAGTGTTTAACGATAA+CGG | 0.539789 | 7.4:+51111702 | None:intergenic |
| GGGCTGAAAAGGAGACAAAA+GGG | 0.540477 | 7.4:-51110153 | MS.gene30450:CDS |
| TGATTGAGTTGCCATTGAGA+AGG | 0.569731 | 7.4:+51109999 | None:intergenic |
| CATACTCTTTGTTGGAAAGG+TGG | 0.571116 | 7.4:-51109438 | MS.gene30450:CDS |
| AGGTGGTCAATCCTCTTGAT+GGG | 0.571602 | 7.4:-51109421 | MS.gene30450:CDS |
| AGTCGATTGGAGGGATCGGA+GGG | 0.572503 | 7.4:+51109513 | None:intergenic |
| TAGGCAAGTTCAGGATTCCA+AGG | 0.573083 | 7.4:-51109760 | MS.gene30450:CDS |
| TGTTTGAAGGAAGGTTGAAG+AGG | 0.574991 | 7.4:+51111492 | None:intergenic |
| CCTCGTGAAGAAGTGGAAGT+AGG | 0.577112 | 7.4:-51109779 | MS.gene30450:CDS |
| AGTGATGTTCATGGAAACGT+TGG | 0.579114 | 7.4:+51111776 | None:intergenic |
| ACAAAGTCGATTGGAGGGAT+CGG | 0.580233 | 7.4:+51109509 | None:intergenic |
| TGTCTTACGTCAATGGTGTG+TGG | 0.580488 | 7.4:-51111530 | MS.gene30450:CDS |
| ATGATCGCTACTGGCTCCGA+GGG | 0.582367 | 7.4:-51111675 | MS.gene30450:CDS |
| TGGTCAGCTACAAAGTCGAT+TGG | 0.583969 | 7.4:+51109500 | None:intergenic |
| CACTATATTTCAAAGGAGTG+TGG | 0.586966 | 7.4:-51110066 | MS.gene30450:CDS |
| TCAGCTACAAAGTCGATTGG+AGG | 0.593325 | 7.4:+51109503 | None:intergenic |
| AAGTCGATTGGAGGGATCGG+AGG | 0.595748 | 7.4:+51109512 | None:intergenic |
| GATCACCTGTGGATTCAGAC+TGG | 0.597900 | 7.4:+51111622 | None:intergenic |
| TGACCGCTAGTGACATAAGC+GGG | 0.598350 | 7.4:-51109553 | MS.gene30450:CDS |
| TTCAACAATCACCCATCAAG+AGG | 0.605491 | 7.4:+51109410 | None:intergenic |
| TATGATCGCTACTGGCTCCG+AGG | 0.606363 | 7.4:-51111676 | MS.gene30450:CDS |
| GTAAGACAAGCAAGGTCCAC+CGG | 0.606727 | 7.4:+51111545 | None:intergenic |
| TGTGGATTCAGACTGGAGGA+AGG | 0.608761 | 7.4:+51111629 | None:intergenic |
| ATAGTGCATTAGCAAAGATG+AGG | 0.612099 | 7.4:+51110083 | None:intergenic |
| CTTGTTTATAAGGAAGACCA+AGG | 0.612910 | 7.4:+51109915 | None:intergenic |
| TGCAGCTGATTTCGTCAACA+AGG | 0.614701 | 7.4:-51111436 | MS.gene30450:intron |
| ATTAAAGATCTTCTTCCACA+TGG | 0.617688 | 7.4:-51110127 | MS.gene30450:CDS |
| CAGCTACAAAGTCGATTGGA+GGG | 0.619392 | 7.4:+51109504 | None:intergenic |
| AAAGGATTTGAGATCACCTG+TGG | 0.624197 | 7.4:+51111611 | None:intergenic |
| AGAATGATGCAAAATCTCAT+CGG | 0.626709 | 7.4:-51111819 | MS.gene30450:CDS |
| CCTACTTCCACTTCTTCACG+AGG | 0.642731 | 7.4:+51109779 | None:intergenic |
| TAGTGCATTAGCAAAGATGA+GGG | 0.646084 | 7.4:+51110084 | None:intergenic |
| CACCTGTGGATTCAGACTGG+AGG | 0.650633 | 7.4:+51111625 | None:intergenic |
| TGCATTAGCAAAGATGAGGG+TGG | 0.683896 | 7.4:+51110087 | None:intergenic |
| GTGACCGCTAGTGACATAAG+CGG | 0.697352 | 7.4:-51109554 | MS.gene30450:CDS |
| ACACCCGCTTATGTCACTAG+CGG | 0.740390 | 7.4:+51109550 | None:intergenic |
| CCATTGACGTAAGACAAGCA+AGG | 0.746622 | 7.4:+51111537 | None:intergenic |
| AAGCTGTTAACTGAGCCATG+TGG | 0.785107 | 7.4:+51110112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATGATTTATTTAACA+TGG | - | chr7.4:51110998-51111017 | MS.gene30450:intron | 10.0% |
| !!! | TGAGTTATTATTTTTTTTAA+TGG | - | chr7.4:51110038-51110057 | MS.gene30450:CDS | 10.0% |
| !! | TTCTTAATTACTTGATTAAT+TGG | - | chr7.4:51110196-51110215 | MS.gene30450:intron | 15.0% |
| !!! | AAAAATTAAATTTTGCTTGA+AGG | + | chr7.4:51110466-51110485 | None:intergenic | 15.0% |
| !!! | AAACATTTTGTTGATATTAT+TGG | + | chr7.4:51110948-51110967 | None:intergenic | 15.0% |
| !!! | AGATTTTAAAACTGATTATT+TGG | + | chr7.4:51110434-51110453 | None:intergenic | 15.0% |
| !!! | ATAATTTGTTACTAATAATG+TGG | - | chr7.4:51110286-51110305 | MS.gene30450:intron | 15.0% |
| !!! | TAATTTGTTACTAATAATGT+GGG | - | chr7.4:51110287-51110306 | MS.gene30450:intron | 15.0% |
| !!! | TTTTTTTAATGGATTGTTAT+GGG | - | chr7.4:51110049-51110068 | MS.gene30450:CDS | 15.0% |
| !!! | TTTTTTTTAATGGATTGTTA+TGG | - | chr7.4:51110048-51110067 | MS.gene30450:CDS | 15.0% |
| !! | AAAATAAGACAAGCATAATT+TGG | - | chr7.4:51110756-51110775 | MS.gene30450:intron | 20.0% |
| !! | AAATAAGACAAGCATAATTT+GGG | - | chr7.4:51110757-51110776 | MS.gene30450:intron | 20.0% |
| !! | ACATAAAGTTCTTTACTTAT+AGG | + | chr7.4:51111599-51111618 | None:intergenic | 20.0% |
| !! | TAATCAAGTAATTAAGAAAG+AGG | + | chr7.4:51110194-51110213 | None:intergenic | 20.0% |
| !! | TTAAAACTGATTATTTGGAA+AGG | + | chr7.4:51110429-51110448 | None:intergenic | 20.0% |
| !!! | AATTACAGTTTTTAATCAAG+TGG | + | chr7.4:51110661-51110680 | None:intergenic | 20.0% |
| !!! | ACATTATTTGTTTTGTCTAA+TGG | + | chr7.4:51110621-51110640 | None:intergenic | 20.0% |
| !!! | ATGAAGACTGATATTATTTT+AGG | + | chr7.4:51110246-51110265 | None:intergenic | 20.0% |
| !!! | CATTATTTGTTTTGTCTAAT+GGG | + | chr7.4:51110620-51110639 | None:intergenic | 20.0% |
| ! | AGACATTAGGTAATCTTTAT+TGG | + | chr7.4:51110844-51110863 | None:intergenic | 25.0% |
| ! | AGTAAAGAACTTTATGTTTC+CGG | - | chr7.4:51111602-51111621 | MS.gene30450:CDS | 25.0% |
| ! | ATTAATTGGCTAAACAGTTA+AGG | - | chr7.4:51110210-51110229 | MS.gene30450:intron | 25.0% |
| ! | CAAAACAAATAATGTGACTT+TGG | - | chr7.4:51110626-51110645 | MS.gene30450:intron | 25.0% |
| ! | CTCTGATCAGAAATAAAAAA+GGG | + | chr7.4:51111760-51111779 | None:intergenic | 25.0% |
| ! | TAAACACTAAGTTCGTAAAT+CGG | + | chr7.4:51110162-51110181 | None:intergenic | 25.0% |
| ! | TAAACAGTTAAGGTATAAAG+TGG | - | chr7.4:51110220-51110239 | MS.gene30450:intron | 25.0% |
| ! | TCTCTGATCAGAAATAAAAA+AGG | + | chr7.4:51111761-51111780 | None:intergenic | 25.0% |
| ! | TTAGAAGAAATATTGAACCT+TGG | + | chr7.4:51111494-51111513 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | - | chr7.4:51111641-51111660 | MS.gene30450:CDS | 25.0% |
| !! | ATTATTGGCACATATTTTGT+TGG | + | chr7.4:51110933-51110952 | None:intergenic | 25.0% |
| !! | TTGACTTTACCTTTTTCTAT+GGG | - | chr7.4:51111548-51111567 | MS.gene30450:CDS | 25.0% |
| !!! | ACAAGCTTGTTTTTCATAAT+TGG | + | chr7.4:51110574-51110593 | None:intergenic | 25.0% |
| !!! | ATTGACTTTACCTTTTTCTA+TGG | - | chr7.4:51111547-51111566 | MS.gene30450:CDS | 25.0% |
| !!! | ATTTTTTCATAAGCAGATTG+AGG | - | chr7.4:51110318-51110337 | MS.gene30450:intron | 25.0% |
| !!! | TATAATTGATACTGATTCCT+AGG | - | chr7.4:51111028-51111047 | MS.gene30450:intron | 25.0% |
| !!! | TTTTGTTGGTAAATCACATA+TGG | + | chr7.4:51110919-51110938 | None:intergenic | 25.0% |
| !!! | TTTTTTCATAAGCAGATTGA+GGG | - | chr7.4:51110319-51110338 | MS.gene30450:intron | 25.0% |
| AACCGATTATTGTGCTTTAA+AGG | + | chr7.4:51110389-51110408 | None:intergenic | 30.0% | |
| AACTGTAATTAGCACATATG+AGG | - | chr7.4:51110671-51110690 | MS.gene30450:intron | 30.0% | |
| AAGGATGGCATATACTAAAA+AGG | + | chr7.4:51109858-51109877 | None:intergenic | 30.0% | |
| AATCACATATGGAAACAGTT+AGG | + | chr7.4:51110908-51110927 | None:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | + | chr7.4:51109758-51109777 | None:intergenic | 30.0% | |
| ATTAAAGATCTTCTTCCACA+TGG | - | chr7.4:51111107-51111126 | MS.gene30450:intron | 30.0% | |
| CTTACATGTAATTGTACTAC+AGG | + | chr7.4:51110362-51110381 | None:intergenic | 30.0% | |
| GAGACAAGAAGTGAATTTAT+GGG | - | chr7.4:51111061-51111080 | MS.gene30450:intron | 30.0% | |
| GCTAATGCACTATATTTCAA+AGG | - | chr7.4:51111161-51111180 | MS.gene30450:intron | 30.0% | |
| GTTAAGCTTAATGAGAGTTT+CGG | - | chr7.4:51110084-51110103 | MS.gene30450:CDS | 30.0% | |
| GTTTGATACTTCAAAAACGA+AGG | - | chr7.4:51111199-51111218 | MS.gene30450:intron | 30.0% | |
| TCTCATTAAGCTTAACACAA+TGG | + | chr7.4:51110080-51110099 | None:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | - | chr7.4:51111524-51111543 | MS.gene30450:CDS | 30.0% | |
| TGAGACAAGAAGTGAATTTA+TGG | - | chr7.4:51111060-51111079 | MS.gene30450:intron | 30.0% | |
| TGATCAGAAATAAAAAAGGG+TGG | + | chr7.4:51111757-51111776 | None:intergenic | 30.0% | |
| TTGTATTCAAAATGAGTCGA+AGG | + | chr7.4:51110813-51110832 | None:intergenic | 30.0% | |
| ! | AGTATATGCCATCCTTTTAA+GGG | - | chr7.4:51109862-51109881 | MS.gene30450:CDS | 30.0% |
| ! | TAGTATATGCCATCCTTTTA+AGG | - | chr7.4:51109861-51109880 | MS.gene30450:CDS | 30.0% |
| !! | CTTTTCTTTGAGTTTTTGAC+TGG | + | chr7.4:51109497-51109516 | None:intergenic | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | - | chr7.4:51111224-51111243 | MS.gene30450:intron | 30.0% |
| !! | TGCCTTTAAAGCACAATAAT+CGG | - | chr7.4:51110384-51110403 | MS.gene30450:intron | 30.0% |
| !!! | TTTGATGGTTTTAAAGTCCT+TGG | - | chr7.4:51111302-51111321 | MS.gene30450:intron | 30.0% |
| AACAAGCTCATCCAGTTAAT+TGG | + | chr7.4:51110869-51110888 | None:intergenic | 35.0% | |
| AACCATACTCTTTGTTGGAA+AGG | - | chr7.4:51111793-51111812 | MS.gene30450:CDS | 35.0% | |
| ACAATAGTCCCTTAAAAGGA+TGG | + | chr7.4:51109873-51109892 | None:intergenic | 35.0% | |
| AGCACAGTGTTTAACGATAA+CGG | + | chr7.4:51109535-51109554 | None:intergenic | 35.0% | |
| ATAAGCAGATTGAGGGATAA+GGG | - | chr7.4:51110326-51110345 | MS.gene30450:intron | 35.0% | |
| ATAGTGCATTAGCAAAGATG+AGG | + | chr7.4:51111154-51111173 | None:intergenic | 35.0% | |
| ATCATTCTTGCTGGTCATAA+AGG | + | chr7.4:51111267-51111286 | None:intergenic | 35.0% | |
| CAAGTGTTTAGTGATGTTCA+TGG | + | chr7.4:51109470-51109489 | None:intergenic | 35.0% | |
| CACTATATTTCAAAGGAGTG+TGG | - | chr7.4:51111168-51111187 | MS.gene30450:intron | 35.0% | |
| CAGTTAATTGGCAAGACATT+AGG | + | chr7.4:51110857-51110876 | None:intergenic | 35.0% | |
| CAGTTTATCAGTTCGTTTGA+TGG | - | chr7.4:51111287-51111306 | MS.gene30450:intron | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | - | chr7.4:51111329-51111348 | MS.gene30450:intron | 35.0% | |
| CTAATGTCTTGCCAATTAAC+TGG | - | chr7.4:51110855-51110874 | MS.gene30450:intron | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | + | chr7.4:51111322-51111341 | None:intergenic | 35.0% | |
| GATAAACTGATCATTCTTGC+TGG | + | chr7.4:51111276-51111295 | None:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | + | chr7.4:51109754-51109773 | None:intergenic | 35.0% | |
| TAGTGCATTAGCAAAGATGA+GGG | + | chr7.4:51111153-51111172 | None:intergenic | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | - | chr7.4:51111565-51111584 | MS.gene30450:CDS | 35.0% | |
| TCATTCTTGCTGGTCATAAA+GGG | + | chr7.4:51111266-51111285 | None:intergenic | 35.0% | |
| TTAAACCTGCAGGTGTATAT+GGG | + | chr7.4:51110494-51110513 | None:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAA+GGG | - | chr7.4:51111375-51111394 | MS.gene30450:intron | 35.0% | |
| TTTAAACCTGCAGGTGTATA+TGG | + | chr7.4:51110495-51110514 | None:intergenic | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+AGG | - | chr7.4:51111374-51111393 | MS.gene30450:intron | 35.0% | |
| ! | ACTTTACCTTTTTCTATGGG+AGG | - | chr7.4:51111551-51111570 | MS.gene30450:CDS | 35.0% |
| ! | AGCTTCTGATTCTGAGTTTT+TGG | - | chr7.4:51111421-51111440 | MS.gene30450:intron | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | - | chr7.4:51111070-51111089 | MS.gene30450:intron | 35.0% |
| ! | CTGATCAGAGAAGATTTTAG+TGG | - | chr7.4:51111770-51111789 | MS.gene30450:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | - | chr7.4:51111320-51111339 | MS.gene30450:intron | 35.0% |
| ! | GTTGTCAGCTTTGATTGATA+AGG | - | chr7.4:51111397-51111416 | MS.gene30450:intron | 35.0% |
| !! | ATCCTTTTAAGGGACTATTG+TGG | - | chr7.4:51109872-51109891 | MS.gene30450:CDS | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | + | chr7.4:51111332-51111351 | None:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | + | chr7.4:51111624-51111643 | None:intergenic | 35.0% |
| !!! | GCTTGTCTTATTTTGTAGAC+AGG | + | chr7.4:51110750-51110769 | None:intergenic | 35.0% |
| AACTCGCACACACAACTATT+TGG | - | chr7.4:51109936-51109955 | MS.gene30450:CDS | 40.0% | |
| AGAAACAAGCTGAGAGCAAA+AGG | + | chr7.4:51109644-51109663 | None:intergenic | 40.0% | |
| AGCCACAATAGTCCCTTAAA+AGG | + | chr7.4:51109877-51109896 | None:intergenic | 40.0% | |
| AGCCTAACAATATCGGCAAT+CGG | - | chr7.4:51110112-51110131 | MS.gene30450:CDS | 40.0% | |
| AGTGATGTTCATGGAAACGT+TGG | + | chr7.4:51109461-51109480 | None:intergenic | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | - | chr7.4:51111788-51111807 | MS.gene30450:CDS | 40.0% | |
| ATAATCCCATATACACCTGC+AGG | - | chr7.4:51110486-51110505 | MS.gene30450:intron | 40.0% | |
| CACCTTTCCAACAAAGAGTA+TGG | + | chr7.4:51111798-51111817 | None:intergenic | 40.0% | |
| CATAAGCAGATTGAGGGATA+AGG | - | chr7.4:51110325-51110344 | MS.gene30450:intron | 40.0% | |
| CATACTCTTTGTTGGAAAGG+TGG | - | chr7.4:51111796-51111815 | MS.gene30450:CDS | 40.0% | |
| GGCTACTCATTCTACATTCA+TGG | - | chr7.4:51109893-51109912 | MS.gene30450:CDS | 40.0% | |
| GGTCCTTAGCCTAACAATAT+CGG | - | chr7.4:51110105-51110124 | MS.gene30450:CDS | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | + | chr7.4:51111560-51111579 | None:intergenic | 40.0% | |
| TAAGCAGATTGAGGGATAAG+GGG | - | chr7.4:51110327-51110346 | MS.gene30450:intron | 40.0% | |
| TCTCAATGGCAACTCAATCA+AGG | - | chr7.4:51111238-51111257 | MS.gene30450:intron | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | + | chr7.4:51109745-51109764 | None:intergenic | 40.0% | |
| TTGCCGATATTGTTAGGCTA+AGG | + | chr7.4:51110111-51110130 | None:intergenic | 40.0% | |
| ! | AAAGGATTTGAGATCACCTG+TGG | + | chr7.4:51109626-51109645 | None:intergenic | 40.0% |
| ! | TGATTGAGTTGCCATTGAGA+AGG | + | chr7.4:51111238-51111257 | None:intergenic | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | + | chr7.4:51109456-51109475 | None:intergenic | 40.0% |
| ! | TTGCTCTCAGCTTGTTTCTT+CGG | - | chr7.4:51109645-51109664 | MS.gene30450:CDS | 40.0% |
| !!! | ATTTTGCTTGAAGGTGCTGT+TGG | + | chr7.4:51110457-51110476 | None:intergenic | 40.0% |
| AAGCTGTTAACTGAGCCATG+TGG | + | chr7.4:51111125-51111144 | None:intergenic | 45.0% | |
| AAGGTGGTCAATCCTCTTGA+TGG | - | chr7.4:51111812-51111831 | MS.gene30450:CDS | 45.0% | |
| AAGTGGAAGTAGGCAAGTTC+AGG | - | chr7.4:51111465-51111484 | MS.gene30450:CDS | 45.0% | |
| ACAAAGTCGATTGGAGGGAT+CGG | + | chr7.4:51111728-51111747 | None:intergenic | 45.0% | |
| AGGTGGTCAATCCTCTTGAT+GGG | - | chr7.4:51111813-51111832 | MS.gene30450:CDS | 45.0% | |
| CAGCTACAAAGTCGATTGGA+GGG | + | chr7.4:51111733-51111752 | None:intergenic | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | + | chr7.4:51109700-51109719 | None:intergenic | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | - | chr7.4:51109697-51109716 | MS.gene30450:CDS | 45.0% | |
| CGCAACATGTTTAAACCTGC+AGG | + | chr7.4:51110504-51110523 | None:intergenic | 45.0% | |
| GAATCTTCCTCGTGAAGAAG+TGG | - | chr7.4:51111448-51111467 | MS.gene30450:CDS | 45.0% | |
| GCAGGTTTAAACATGTTGCG+TGG | - | chr7.4:51110504-51110523 | MS.gene30450:intron | 45.0% | |
| GGGCTGAAAAGGAGACAAAA+GGG | - | chr7.4:51111081-51111100 | MS.gene30450:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | - | chr7.4:51109705-51109724 | MS.gene30450:CDS | 45.0% | |
| TAGGCAAGTTCAGGATTCCA+AGG | - | chr7.4:51111474-51111493 | MS.gene30450:CDS | 45.0% | |
| TCAGCTACAAAGTCGATTGG+AGG | + | chr7.4:51111734-51111753 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGG+TGG | + | chr7.4:51111150-51111169 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | - | chr7.4:51111080-51111099 | MS.gene30450:intron | 45.0% | |
| TGGTCAGCTACAAAGTCGAT+TGG | + | chr7.4:51111737-51111756 | None:intergenic | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | - | chr7.4:51109704-51109723 | MS.gene30450:CDS | 45.0% | |
| TTGTCTCACTTCATCAGCCT+AGG | + | chr7.4:51111048-51111067 | None:intergenic | 45.0% | |
| ! | TGCAGCTGATTTCGTCAACA+AGG | - | chr7.4:51109798-51109817 | MS.gene30450:CDS | 45.0% |
| ! | TGCCGATTGCCGATATTGTT+AGG | + | chr7.4:51110117-51110136 | None:intergenic | 45.0% |
| !! | GACAACCCTTCTTTTTCGTC+AGG | + | chr7.4:51111383-51111402 | None:intergenic | 45.0% |
| ACACCCGCTTATGTCACTAG+CGG | + | chr7.4:51111687-51111706 | None:intergenic | 50.0% | |
| ACTGGAGGAAGGAGAGAAGT+TGG | + | chr7.4:51109597-51109616 | None:intergenic | 50.0% | |
| CCTACTTCCACTTCTTCACG+AGG | + | chr7.4:51111458-51111477 | None:intergenic | 50.0% | |
| CCTCGTGAAGAAGTGGAAGT+AGG | - | chr7.4:51111455-51111474 | MS.gene30450:CDS | 50.0% | |
| GATCACCTGTGGATTCAGAC+TGG | + | chr7.4:51109615-51109634 | None:intergenic | 50.0% | |
| GTAAGACAAGCAAGGTCCAC+CGG | + | chr7.4:51109692-51109711 | None:intergenic | 50.0% | |
| GTGACCGCTAGTGACATAAG+CGG | - | chr7.4:51111680-51111699 | MS.gene30450:CDS | 50.0% | |
| GTGCTCAGTATGATCGCTAC+TGG | - | chr7.4:51109550-51109569 | MS.gene30450:CDS | 50.0% | |
| TGACCGCTAGTGACATAAGC+GGG | - | chr7.4:51111681-51111700 | MS.gene30450:CDS | 50.0% | |
| TGTGGATTCAGACTGGAGGA+AGG | + | chr7.4:51109608-51109627 | None:intergenic | 50.0% | |
| TTCCTCCAGTCTGAATCCAC+AGG | - | chr7.4:51109607-51109626 | MS.gene30450:CDS | 50.0% | |
| AAGTCGATTGGAGGGATCGG+AGG | + | chr7.4:51111725-51111744 | None:intergenic | 55.0% | |
| AGTCGATTGGAGGGATCGGA+GGG | + | chr7.4:51111724-51111743 | None:intergenic | 55.0% | |
| CACCTGTGGATTCAGACTGG+AGG | + | chr7.4:51109612-51109631 | None:intergenic | 55.0% | |
| !! | ATGATCGCTACTGGCTCCGA+GGG | - | chr7.4:51109559-51109578 | MS.gene30450:CDS | 55.0% |
| !! | GTTTCTTCGGTGCTCTCCGA+TGG | - | chr7.4:51109658-51109677 | MS.gene30450:CDS | 55.0% |
| !! | TATGATCGCTACTGGCTCCG+AGG | - | chr7.4:51109558-51109577 | MS.gene30450:CDS | 55.0% |
| !! | TTGGTTCTGTGTGCGACCCT+CGG | + | chr7.4:51109578-51109597 | None:intergenic | 55.0% |
| GACAAGCAAGGTCCACCGGC+AGG | + | chr7.4:51109688-51109707 | None:intergenic | 65.0% | |
| CTCTCCGATGGCGCTCCTGC+CGG | - | chr7.4:51109670-51109689 | MS.gene30450:CDS | 70.0% | |
| !! | TCCACCGGCAGGAGCGCCAT+CGG | + | chr7.4:51109677-51109696 | None:intergenic | 70.0% |
| TCCGATGGCGCTCCTGCCGG+TGG | - | chr7.4:51109673-51109692 | MS.gene30450:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 51109418 | 51111838 | 51109418 | ID=MS.gene30450 |
| chr7.4 | mRNA | 51109418 | 51111838 | 51109418 | ID=MS.gene30450.t1;Parent=MS.gene30450 |
| chr7.4 | exon | 51111437 | 51111838 | 51111437 | ID=MS.gene30450.t1.exon1;Parent=MS.gene30450.t1 |
| chr7.4 | CDS | 51111437 | 51111838 | 51111437 | ID=cds.MS.gene30450.t1;Parent=MS.gene30450.t1 |
| chr7.4 | exon | 51109418 | 51110206 | 51109418 | ID=MS.gene30450.t1.exon2;Parent=MS.gene30450.t1 |
| chr7.4 | CDS | 51109418 | 51110206 | 51109418 | ID=cds.MS.gene30450.t1;Parent=MS.gene30450.t1 |
| Gene Sequence |
| Protein sequence |
