Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30681.t1 | XP_013452221.1 | 99.4 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 2.30E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30681.t1 | O49814 | 87.4 | 167 | 21 | 0 | 1 | 167 | 150 | 316 | 1.4e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30681.t1 | A0A072U8Y2 | 99.4 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 1.7e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05316 | MS.gene30681 | 0.814133 | 1.80E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene30681 | 0.802103 | 6.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30681.t1 | MTR_6g048440 | 99.401 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 4.68e-122 | 346 |
| MS.gene30681.t1 | MTR_6g048440 | 99.296 | 142 | 1 | 0 | 1 | 142 | 147 | 288 | 3.68e-102 | 296 |
| MS.gene30681.t1 | MTR_1g100070 | 88.623 | 167 | 19 | 0 | 1 | 167 | 130 | 296 | 6.23e-102 | 295 |
| MS.gene30681.t1 | MTR_1g100070 | 77.487 | 191 | 19 | 1 | 1 | 167 | 130 | 320 | 1.69e-96 | 282 |
| MS.gene30681.t1 | MTR_6g048440 | 99.194 | 124 | 1 | 0 | 1 | 124 | 147 | 270 | 5.07e-88 | 259 |
| MS.gene30681.t1 | MTR_1g100070 | 88.710 | 124 | 14 | 0 | 1 | 124 | 130 | 253 | 8.29e-79 | 236 |
| MS.gene30681.t1 | MTR_6g048440 | 100.000 | 81 | 0 | 0 | 1 | 81 | 147 | 227 | 1.06e-54 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30681.t1 | AT4G25700 | 84.431 | 167 | 26 | 0 | 1 | 167 | 135 | 301 | 5.48e-105 | 303 |
| MS.gene30681.t1 | AT5G52570 | 86.061 | 165 | 23 | 0 | 1 | 165 | 133 | 297 | 1.15e-96 | 281 |
| MS.gene30681.t1 | AT4G25700 | 86.420 | 81 | 11 | 0 | 1 | 81 | 135 | 215 | 2.01e-47 | 154 |
| MS.gene30681.t1 | AT4G25700 | 86.420 | 81 | 11 | 0 | 1 | 81 | 135 | 215 | 2.01e-47 | 154 |
| MS.gene30681.t1 | AT5G52570 | 84.884 | 86 | 13 | 0 | 80 | 165 | 143 | 228 | 9.04e-41 | 137 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAGTTATATATGAAAA+TGG | + | 42991:89192-89211 | MS.gene30681:intron | 10.0% |
| !! | AATAAAAAAAAATGGAAAAT+TGG | - | 42991:87333-87352 | MS.gene30681:intergenic | 10.0% |
| !! | AATTTATCATAGAAAAATTT+AGG | - | 42991:88954-88973 | MS.gene30681:intergenic | 10.0% |
| !! | AGAAAAAATTATAAGAAAAT+TGG | + | 42991:89099-89118 | MS.gene30681:intron | 10.0% |
| !!! | AAAAATATTAGAGTTTTATA+TGG | + | 42991:89043-89062 | MS.gene30681:intron | 10.0% |
| !!! | AAATTTTTCTATGATAAATT+TGG | + | 42991:88954-88973 | MS.gene30681:intron | 10.0% |
| !!! | AATTTTTTAGTTAATTTTGT+TGG | - | 42991:89161-89180 | MS.gene30681:intergenic | 10.0% |
| !!! | AATTTTTTTTTCTACTTTTA+GGG | - | 42991:87857-87876 | MS.gene30681:intergenic | 10.0% |
| !!! | ATTTTTTAGTTAATTTTGTT+GGG | - | 42991:89160-89179 | MS.gene30681:intergenic | 10.0% |
| !! | AAACATTAAAAAAAATACGA+AGG | - | 42991:90435-90454 | MS.gene30681:intergenic | 15.0% |
| !! | AAATCAAACAAATATTCATA+TGG | - | 42991:88238-88257 | MS.gene30681:intergenic | 15.0% |
| !! | AATCAAACAAATATTCATAT+GGG | - | 42991:88237-88256 | MS.gene30681:intergenic | 15.0% |
| !! | ACTAATGTATATAAGAAAAT+TGG | - | 42991:87367-87386 | MS.gene30681:intergenic | 15.0% |
| !! | ATTCTTGATAAGAAAATTAT+TGG | - | 42991:89742-89761 | MS.gene30681:intergenic | 15.0% |
| !! | CAATAGTTATTAATCTATTA+TGG | + | 42991:89912-89931 | MS.gene30681:intron | 15.0% |
| !! | TACAATATTTAAATAACCAA+TGG | + | 42991:88275-88294 | MS.gene30681:intron | 15.0% |
| !!! | AAATATGAATCGAAAATTTT+AGG | + | 42991:89504-89523 | MS.gene30681:intron | 15.0% |
| !!! | AATTATTTTAATTTGAGAGT+TGG | + | 42991:87914-87933 | MS.gene30681:intron | 15.0% |
| !!! | AATTTTCTTATATACATTAG+TGG | + | 42991:87366-87385 | MS.gene30681:intron | 15.0% |
| !!! | ATTATTTTAATTTGAGAGTT+GGG | + | 42991:87915-87934 | MS.gene30681:intron | 15.0% |
| !!! | ATTTTTTTTTCTACTTTTAG+GGG | - | 42991:87856-87875 | MS.gene30681:intergenic | 15.0% |
| !!! | GAAAAAGTTTTTTTTTTTTG+TGG | + | 42991:89280-89299 | MS.gene30681:intron | 15.0% |
| !!! | GAATTTTTTTTTCTACTTTT+AGG | - | 42991:87858-87877 | MS.gene30681:intergenic | 15.0% |
| !!! | TATTATACCAACAAAATTTT+AGG | + | 42991:89621-89640 | MS.gene30681:intron | 15.0% |
| !!! | TATTTGTTAGAGATTAAATT+GGG | + | 42991:89073-89092 | MS.gene30681:intron | 15.0% |
| !!! | TATTTGTTTGATTTTGATTT+TGG | + | 42991:88244-88263 | MS.gene30681:intron | 15.0% |
| !!! | TCACATTTTAATATTTAACT+AGG | - | 42991:89577-89596 | MS.gene30681:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTGTTTTGA+AGG | - | 42991:89254-89273 | MS.gene30681:intergenic | 15.0% |
| !!! | TTATTTGTTAGAGATTAAAT+TGG | + | 42991:89072-89091 | MS.gene30681:intron | 15.0% |
| !!! | TTTTTTAGTTAATTTTGTTG+GGG | - | 42991:89159-89178 | MS.gene30681:intergenic | 15.0% |
| !!! | TTTTTTATCAAGTGTATTTT+TGG | + | 42991:87609-87628 | MS.gene30681:intron | 15.0% |
| !! | AAAAATGAAAAGTTGAACAA+AGG | - | 42991:89418-89437 | MS.gene30681:intergenic | 20.0% |
| !! | AAAATACACAAATAGAAGAT+TGG | + | 42991:87499-87518 | MS.gene30681:intron | 20.0% |
| !! | AAAATTAGTTAAAGCAAACA+AGG | - | 42991:88170-88189 | MS.gene30681:intergenic | 20.0% |
| !! | AAACAGAAAAACACTAAAAT+AGG | - | 42991:89369-89388 | MS.gene30681:intergenic | 20.0% |
| !! | AAGTTAAAAACAAAACAGAA+AGG | - | 42991:88577-88596 | MS.gene30681:intergenic | 20.0% |
| !! | AATAAAAGACAAGAAAATCA+TGG | - | 42991:90318-90337 | MS.gene30681:intergenic | 20.0% |
| !! | ACAAAATCAATCGAATATAT+TGG | + | 42991:90458-90477 | MS.gene30681:intron | 20.0% |
| !! | ATGATCTAAACATTTATCAT+TGG | - | 42991:88601-88620 | MS.gene30681:intergenic | 20.0% |
| !! | ATTAGGTATTTGATTATGTT+TGG | + | 42991:90274-90293 | MS.gene30681:intron | 20.0% |
| !! | CAATGAAAACCATAAATTAA+GGG | - | 42991:88524-88543 | MS.gene30681:intergenic | 20.0% |
| !! | GTATATGTTTAAATTATCAG+TGG | - | 42991:87708-87727 | MS.gene30681:intergenic | 20.0% |
| !! | TATCTTAACAACAAAAAAAG+TGG | - | 42991:87457-87476 | MS.gene30681:intergenic | 20.0% |
| !! | TATTTAAATAACCAATGGTT+AGG | + | 42991:88280-88299 | MS.gene30681:intron | 20.0% |
| !! | TGATAAAGAATGTTATGATA+AGG | - | 42991:90208-90227 | MS.gene30681:intergenic | 20.0% |
| !! | TGATGAGTGATAAATAAATA+TGG | + | 42991:90577-90596 | MS.gene30681:intron | 20.0% |
| !! | TTAGGTATTTGATTATGTTT+GGG | + | 42991:90275-90294 | MS.gene30681:intron | 20.0% |
| !! | TTCTTATCAAGAATTGAATT+TGG | + | 42991:89748-89767 | MS.gene30681:intron | 20.0% |
| !!! | ACTAATTTGTCTTTACTATA+AGG | - | 42991:88995-89014 | MS.gene30681:intergenic | 20.0% |
| !!! | ACTAGGTATATTTAATTTTC+AGG | + | 42991:87971-87990 | MS.gene30681:intron | 20.0% |
| !!! | ATAGTTTAGAACTTGTAATA+GGG | - | 42991:88088-88107 | MS.gene30681:intergenic | 20.0% |
| !!! | ATTAATTGTTTTATTCCTCT+AGG | + | 42991:87427-87446 | MS.gene30681:intron | 20.0% |
| !!! | CTAAACTATCCAATAATTTT+TGG | + | 42991:88099-88118 | MS.gene30681:intron | 20.0% |
| !!! | CTTTTAGAAGTCTTTTTTTA+GGG | + | 42991:87881-87900 | MS.gene30681:intron | 20.0% |
| !!! | GTGTGTACATTATTAATTTT+GGG | + | 42991:87937-87956 | MS.gene30681:intron | 20.0% |
| !!! | TCTTTTAATCTAGTTCAATT+AGG | + | 42991:89471-89490 | MS.gene30681:intron | 20.0% |
| !!! | TCTTTTAGAAGTCTTTTTTT+AGG | + | 42991:87880-87899 | MS.gene30681:intron | 20.0% |
| !!! | TTTTAGAAGTCTTTTTTTAG+GGG | + | 42991:87882-87901 | MS.gene30681:intron | 20.0% |
| !!! | TTTTGTTGACCAAAAATTAT+TGG | - | 42991:88111-88130 | MS.gene30681:intergenic | 20.0% |
| ! | AAGGATAAGAAATTACTTTG+TGG | - | 42991:90189-90208 | MS.gene30681:intergenic | 25.0% |
| ! | AGGATAAGAAATTACTTTGT+GGG | - | 42991:90188-90207 | MS.gene30681:intergenic | 25.0% |
| ! | ATGTTTAAATTATCAGTGGT+GGG | - | 42991:87704-87723 | MS.gene30681:intergenic | 25.0% |
| ! | CCAATGAAAACCATAAATTA+AGG | - | 42991:88525-88544 | MS.gene30681:intergenic | 25.0% |
| ! | GTAACGTATAACTAAATGTT+AGG | + | 42991:89598-89617 | MS.gene30681:intron | 25.0% |
| ! | TAGGTATTTGATTATGTTTG+GGG | + | 42991:90276-90295 | MS.gene30681:intron | 25.0% |
| ! | TATGTTTAAATTATCAGTGG+TGG | - | 42991:87705-87724 | MS.gene30681:intergenic | 25.0% |
| ! | TCTTTACTATAAGGCTATTT+AGG | - | 42991:88986-89005 | MS.gene30681:intergenic | 25.0% |
| ! | TTGTAATAGGGGAAATTAAT+TGG | - | 42991:88076-88095 | MS.gene30681:intergenic | 25.0% |
| !! | CCTTAATTTATGGTTTTCAT+TGG | + | 42991:88522-88541 | MS.gene30681:intron | 25.0% |
| !! | GATAGTTTAGAACTTGTAAT+AGG | - | 42991:88089-88108 | MS.gene30681:intergenic | 25.0% |
| !! | GATCTTTACTCTTTTTCTAT+AGG | + | 42991:89121-89140 | MS.gene30681:intron | 25.0% |
| !! | GGTGTGTACATTATTAATTT+TGG | + | 42991:87936-87955 | MS.gene30681:intron | 25.0% |
| !! | TAGTTTAGAACTTGTAATAG+GGG | - | 42991:88087-88106 | MS.gene30681:intergenic | 25.0% |
| !! | TTTAAAATTCACGAACAACT+CGG | - | 42991:88646-88665 | MS.gene30681:intergenic | 25.0% |
| !!! | AACACTTGTCACTTTTTTAT+AGG | + | 42991:89529-89548 | MS.gene30681:intron | 25.0% |
| !!! | AATTTTGGAATTTGCATGTT+TGG | + | 42991:89313-89332 | MS.gene30681:intron | 25.0% |
| !!! | AGGTATATTTAATTTTCAGG+TGG | + | 42991:87974-87993 | MS.gene30681:intron | 25.0% |
| !!! | ATACCAACAAAATTTTAGGT+AGG | + | 42991:89625-89644 | MS.gene30681:intron | 25.0% |
| !!! | CACTATAGATTTTAACATGA+GGG | - | 42991:89974-89993 | MS.gene30681:intergenic | 25.0% |
| !!! | CTATTTTTTTAACTCGAGTT+CGG | - | 42991:88673-88692 | MS.gene30681:intergenic | 25.0% |
| !!! | GGTATATTTAATTTTCAGGT+GGG | + | 42991:87975-87994 | MS.gene30681:intron | 25.0% |
| !!! | TCACTATAGATTTTAACATG+AGG | - | 42991:89975-89994 | MS.gene30681:intergenic | 25.0% |
| !!! | TTTGAATTTTGAAGCATGTT+TGG | - | 42991:88147-88166 | MS.gene30681:intergenic | 25.0% |
| !!! | TTTTTGTTTGTGTCTTGTTA+AGG | - | 42991:89826-89845 | MS.gene30681:intergenic | 25.0% |
| AAAAAAAGTGGAAATCCTAG+AGG | - | 42991:87445-87464 | MS.gene30680:intergenic | 30.0% | |
| AAAACAAAACAGAAAGGTCA+CGG | - | 42991:88571-88590 | MS.gene30680:intergenic | 30.0% | |
| AACACTTATTAGCATGATCT+AGG | - | 42991:88787-88806 | MS.gene30680:intergenic | 30.0% | |
| ACACTTATTAGCATGATCTA+GGG | - | 42991:88786-88805 | MS.gene30680:intergenic | 30.0% | |
| ACCATTCAGACAAATTTGAT+GGG | + | 42991:90346-90365 | MS.gene30681:CDS | 30.0% | |
| ATACACAAATAGAAGATTGG+TGG | + | 42991:87502-87521 | MS.gene30681:intron | 30.0% | |
| ATCAAATAGTTCCTAACCAT+TGG | - | 42991:88294-88313 | MS.gene30681:intergenic | 30.0% | |
| GAAAATGGAAGTGAAAACAT+GGG | + | 42991:89207-89226 | MS.gene30681:intron | 30.0% | |
| GATAAATAAATATGGTGTGC+AGG | + | 42991:90585-90604 | MS.gene30681:intron | 30.0% | |
| TAATCGCACTAAAGTACATT+AGG | - | 42991:89940-89959 | MS.gene30681:intergenic | 30.0% | |
| TATCACTCATCAGTTATCAT+AGG | - | 42991:90569-90588 | MS.gene30681:intergenic | 30.0% | |
| TATGTGTCTCCCTTAATTTA+TGG | + | 42991:88512-88531 | MS.gene30681:intron | 30.0% | |
| TCAAATGAGATAAACACAAG+TGG | - | 42991:87530-87549 | MS.gene30681:intergenic | 30.0% | |
| TGAAAATGGAAGTGAAAACA+TGG | + | 42991:89206-89225 | MS.gene30681:intron | 30.0% | |
| TGTGAAAGAAACCAAAGTTA+AGG | - | 42991:88459-88478 | MS.gene30681:intergenic | 30.0% | |
| TTCTCACGAATAAATCATTG+TGG | + | 42991:89772-89791 | MS.gene30681:intron | 30.0% | |
| TTTGGGCAATAAATTCAACT+AGG | + | 42991:87954-87973 | MS.gene30681:intron | 30.0% | |
| ! | AACTTTGGTTTCTTTCACAA+AGG | + | 42991:88460-88479 | MS.gene30681:CDS | 30.0% |
| ! | CATGCTAATAAGTGTTTCTA+AGG | + | 42991:88791-88810 | MS.gene30681:intron | 30.0% |
| ! | GTTCCTACCTAAAATTTTGT+TGG | - | 42991:89631-89650 | MS.gene30681:intergenic | 30.0% |
| ! | TGATTATGTTTGGGGTATAA+AGG | + | 42991:90284-90303 | MS.gene30681:intron | 30.0% |
| !! | TAATAAGTGTTTCTAAGGCA+TGG | + | 42991:88796-88815 | MS.gene30681:intron | 30.0% |
| !! | TACATTTCTTGGTTTGTCTT+AGG | + | 42991:89340-89359 | MS.gene30681:intron | 30.0% |
| !! | TATAGATTTTAACATGAGGG+AGG | - | 42991:89971-89990 | MS.gene30681:intergenic | 30.0% |
| !!! | ATTTAATTTTCAGGTGGGAA+TGG | + | 42991:87980-87999 | MS.gene30681:intron | 30.0% |
| AAACAAAACAGAAAGGTCAC+GGG | - | 42991:88570-88589 | MS.gene30680:intergenic | 35.0% | |
| AACAAGTGTCATAAGAACAC+TGG | - | 42991:88924-88943 | MS.gene30680:intergenic | 35.0% | |
| AAGAATACAGCTCTTACCTT+TGG | - | 42991:90396-90415 | MS.gene30680:intergenic | 35.0% | |
| AGCTAGAGAAAGAGATAAGT+AGG | + | 42991:90635-90654 | MS.gene30681:CDS | 35.0% | |
| ATTTCATGCACACTTTGTGA+TGG | + | 42991:89440-89459 | MS.gene30681:intron | 35.0% | |
| CACCATTCAGACAAATTTGA+TGG | + | 42991:90345-90364 | MS.gene30681:CDS | 35.0% | |
| CCATTCAGACAAATTTGATG+GGG | + | 42991:90347-90366 | MS.gene30681:CDS | 35.0% | |
| GTCTTGGAATTACGGTATTT+GGG | + | 42991:90068-90087 | MS.gene30681:CDS | 35.0% | |
| GTTAGGAACTATTTGATACG+TGG | + | 42991:88297-88316 | MS.gene30681:intron | 35.0% | |
| GTTCATAGAAGATTCTCAGT+GGG | + | 42991:90121-90140 | MS.gene30681:CDS | 35.0% | |
| TAGAGAAAGAGATAAGTAGG+AGG | + | 42991:90638-90657 | MS.gene30681:CDS | 35.0% | |
| TCTTGTTAAGGAATGTCTCT+AGG | - | 42991:89814-89833 | MS.gene30681:intergenic | 35.0% | |
| TGGTTTCTTTCACAAAGGAT+TGG | + | 42991:88465-88484 | MS.gene30681:CDS | 35.0% | |
| TTAATAATTCAGAGTCCGAG+AGG | + | 42991:89699-89718 | MS.gene30681:intron | 35.0% | |
| ! | TGTGGCTTGAAGCTAAATTT+TGG | + | 42991:89298-89317 | MS.gene30681:intron | 35.0% |
| ! | TGTTTGGTGGATACATTTCT+TGG | + | 42991:89329-89348 | MS.gene30681:intron | 35.0% |
| ! | TTTGGAATTTGCATGTTTGG+TGG | + | 42991:89316-89335 | MS.gene30681:intron | 35.0% |
| ! | TTTTATAGGCAAGAGGTTGT+CGG | + | 42991:89543-89562 | MS.gene30681:intron | 35.0% |
| !!! | GTCACTTTTTTATAGGCAAG+AGG | + | 42991:89536-89555 | MS.gene30681:intron | 35.0% |
| AAACTTTACGCATCTCCTCT+CGG | - | 42991:89717-89736 | MS.gene30680:intergenic | 40.0% | |
| AAATAGGGCACATTGGCAAT+GGG | - | 42991:90148-90167 | MS.gene30680:intergenic | 40.0% | |
| AAGACCCTGCTCGTAAATAA+GGG | - | 42991:90053-90072 | MS.gene30680:intergenic | 40.0% | |
| CAATGTGCCCTATTTCAGAA+GGG | + | 42991:90153-90172 | MS.gene30681:CDS | 40.0% | |
| CATGTTTGTACACGATGGAT+TGG | + | 42991:90099-90118 | MS.gene30681:CDS | 40.0% | |
| CCCCATCAAATTTGTCTGAA+TGG | - | 42991:90350-90369 | MS.gene30681:intergenic | 40.0% | |
| GGTACATTTGCTCTATCAGT+GGG | + | 42991:87293-87312 | MS.gene30681:CDS | 40.0% | |
| GGTCTTGGAATTACGGTATT+TGG | + | 42991:90067-90086 | MS.gene30681:CDS | 40.0% | |
| GGTTCATAGAAGATTCTCAG+TGG | + | 42991:90120-90139 | MS.gene30681:CDS | 40.0% | |
| TCCATCGTGTACAAACATGT+AGG | - | 42991:90098-90117 | MS.gene30681:intergenic | 40.0% | |
| TCCTTCTCTTGCTCTATGAT+GGG | - | 42991:88380-88399 | MS.gene30681:intergenic | 40.0% | |
| TGGAATTACGGTATTTGGGA+TGG | + | 42991:90072-90091 | MS.gene30681:CDS | 40.0% | |
| TGGTACATTTGCTCTATCAG+TGG | + | 42991:87292-87311 | MS.gene30681:CDS | 40.0% | |
| ! | AAATTTGATGGGGTGCCATA+TGG | + | 42991:90357-90376 | MS.gene30681:CDS | 40.0% |
| ! | AATTTGATGGGGTGCCATAT+GGG | + | 42991:90358-90377 | MS.gene30681:CDS | 40.0% |
| ! | GGTGGGATTGTCAAGAATTT+TGG | - | 42991:87687-87706 | MS.gene30681:intergenic | 40.0% |
| ! | TTATTAGCATGATCTAGGGC+AGG | - | 42991:88782-88801 | MS.gene30681:intergenic | 40.0% |
| !!! | AATGGAGTTTTGGGCTAGAT+GGG | + | 42991:87998-88017 | MS.gene30681:CDS | 40.0% |
| AAGTTAAGGAGAGCGATAGC+AGG | - | 42991:88445-88464 | MS.gene30680:intergenic | 45.0% | |
| ATATGGTGTGCAGGAACTTG+AGG | + | 42991:90594-90613 | MS.gene30681:intron | 45.0% | |
| ATGGGTCTTGCTTCAACTTG+TGG | - | 42991:88219-88238 | MS.gene30681:intergenic | 45.0% | |
| CAAGACCCTGCTCGTAAATA+AGG | - | 42991:90054-90073 | MS.gene30681:intergenic | 45.0% | |
| CCAATGTGCCCTATTTCAGA+AGG | + | 42991:90152-90171 | MS.gene30681:CDS | 45.0% | |
| CTCCTTCTCTTGCTCTATGA+TGG | - | 42991:88381-88400 | MS.gene30681:intergenic | 45.0% | |
| CTTATTTACGAGCAGGGTCT+TGG | + | 42991:90052-90071 | MS.gene30681:intron | 45.0% | |
| GAAATAGGGCACATTGGCAA+TGG | - | 42991:90149-90168 | MS.gene30681:intergenic | 45.0% | |
| GCCTACATGTTTGTACACGA+TGG | + | 42991:90094-90113 | MS.gene30681:CDS | 45.0% | |
| GCTATCGCTCTCCTTAACTT+TGG | + | 42991:88445-88464 | MS.gene30681:CDS | 45.0% | |
| TCCCATCATAGAGCAAGAGA+AGG | + | 42991:88376-88395 | MS.gene30681:CDS | 45.0% | |
| ! | GTCACCCTTATTTACGAGCA+GGG | + | 42991:90046-90065 | MS.gene30681:intron | 45.0% |
| ! | TCAGGTGGGAATGGAGTTTT+GGG | + | 42991:87989-88008 | MS.gene30681:intron | 45.0% |
| ! | TGTCACCCTTATTTACGAGC+AGG | + | 42991:90045-90064 | MS.gene30681:intron | 45.0% |
| ! | TTCAGGTGGGAATGGAGTTT+TGG | + | 42991:87988-88007 | MS.gene30681:intron | 45.0% |
| !! | CCTTCTGAAATAGGGCACAT+TGG | - | 42991:90155-90174 | MS.gene30681:intergenic | 45.0% |
| !! | GCAGCTACCCTTCTGAAATA+GGG | - | 42991:90163-90182 | MS.gene30681:intergenic | 45.0% |
| !! | GTTTTCATTGGCTACCCTTG+CGG | + | 42991:88534-88553 | MS.gene30681:intron | 45.0% |
| !! | TGCAGCTACCCTTCTGAAAT+AGG | - | 42991:90164-90183 | MS.gene30681:intergenic | 45.0% |
| !! | TTTCACAAAGGATTGGTCCC+TGG | + | 42991:88472-88491 | MS.gene30681:CDS | 45.0% |
| !!! | GAATGGAGTTTTGGGCTAGA+TGG | + | 42991:87997-88016 | MS.gene30681:CDS | 45.0% |
| !!! | GTGCCATATGGGCTGTTTTT+GGG | + | 42991:90369-90388 | MS.gene30681:CDS | 45.0% |
| !! | ATTATCAAAATAAAAAAAAA+TGG | - | 42991:87341-87360 | MS.gene30681:intergenic | 5.0% |
| !! | CTATTATTATTATTATTATT+AGG | + | 42991:90257-90276 | MS.gene30681:intron | 5.0% |
| AGGAACTTGAGGAAGTGGGA+GGG | + | 42991:90605-90624 | MS.gene30681:intron | 50.0% | |
| CGAGCAGGGTCTTGGAATTA+CGG | + | 42991:90060-90079 | MS.gene30681:intron | 50.0% | |
| CTCTTTGGCATGCTTCCTTG+TGG | + | 42991:88030-88049 | MS.gene30681:CDS | 50.0% | |
| GGTCCCAAAAACAGCCCATA+TGG | - | 42991:90375-90394 | MS.gene30681:intergenic | 50.0% | |
| GTGCAGGAACTTGAGGAAGT+GGG | + | 42991:90601-90620 | MS.gene30681:intron | 50.0% | |
| TACCTCATGCATGTGCCACA+AGG | - | 42991:88048-88067 | MS.gene30681:intergenic | 50.0% | |
| TGTGCAGGAACTTGAGGAAG+TGG | + | 42991:90600-90619 | MS.gene30681:intron | 50.0% | |
| TTCCTTGTGGCACATGCATG+AGG | + | 42991:88043-88062 | MS.gene30681:CDS | 50.0% | |
| ! | TTGGTCCCTGGTCTTTGCTT+TGG | + | 42991:88484-88503 | MS.gene30681:CDS | 50.0% |
| !! | GGTGCCATATGGGCTGTTTT+TGG | + | 42991:90368-90387 | MS.gene30681:CDS | 50.0% |
| !!! | TGGGCTGTTTTTGGGACCAA+AGG | + | 42991:90377-90396 | MS.gene30681:CDS | 50.0% |
| ACCGCACCAAAGCAAAGACC+AGG | - | 42991:88493-88512 | MS.gene30681:intergenic | 55.0% | |
| ATTGGCTACCCTTGCGGTGA+AGG | + | 42991:88540-88559 | MS.gene30681:intron | 55.0% | |
| CAGGAACTTGAGGAAGTGGG+AGG | + | 42991:90604-90623 | MS.gene30681:intron | 55.0% | |
| CCGCACCAAAGCAAAGACCA+GGG | - | 42991:88492-88511 | MS.gene30681:intergenic | 55.0% | |
| TTGGCTACCCTTGCGGTGAA+GGG | + | 42991:88541-88560 | MS.gene30681:intron | 55.0% | |
| ! | CCCTGGTCTTTGCTTTGGTG+CGG | + | 42991:88489-88508 | MS.gene30681:CDS | 55.0% |
| ! | GATGGGCTCACAAGGCTCTT+TGG | + | 42991:88015-88034 | MS.gene30681:CDS | 55.0% |
| ! | TTGGGCTAGATGGGCTCACA+AGG | + | 42991:88007-88026 | MS.gene30681:CDS | 55.0% |
| ACGGGTAACCCTTCACCGCA+AGG | - | 42991:88552-88571 | MS.gene30681:intergenic | 60.0% | |
| CGGGTAACCCTTCACCGCAA+GGG | - | 42991:88551-88570 | MS.gene30681:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42991 | gene | 87287 | 90684 | 87287 | ID=MS.gene30681 |
| 42991 | mRNA | 87287 | 90684 | 87287 | ID=MS.gene30681.t1;Parent=MS.gene30681 |
| 42991 | exon | 87287 | 87322 | 87287 | ID=MS.gene30681.t1.exon1;Parent=MS.gene30681.t1 |
| 42991 | CDS | 87287 | 87322 | 87287 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| 42991 | exon | 87993 | 88064 | 87993 | ID=MS.gene30681.t1.exon2;Parent=MS.gene30681.t1 |
| 42991 | CDS | 87993 | 88064 | 87993 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| 42991 | exon | 88376 | 88510 | 88376 | ID=MS.gene30681.t1.exon3;Parent=MS.gene30681.t1 |
| 42991 | CDS | 88376 | 88510 | 88376 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| 42991 | exon | 90067 | 90192 | 90067 | ID=MS.gene30681.t1.exon4;Parent=MS.gene30681.t1 |
| 42991 | CDS | 90067 | 90192 | 90067 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| 42991 | exon | 90342 | 90398 | 90342 | ID=MS.gene30681.t1.exon5;Parent=MS.gene30681.t1 |
| 42991 | CDS | 90342 | 90398 | 90342 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| 42991 | exon | 90607 | 90684 | 90607 | ID=MS.gene30681.t1.exon6;Parent=MS.gene30681.t1 |
| 42991 | CDS | 90607 | 90684 | 90607 | ID=cds.MS.gene30681.t1;Parent=MS.gene30681.t1 |
| Gene Sequence |
| Protein sequence |
