Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30682.t1 | XP_013452221.1 | 99.4 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 2.30E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30682.t1 | O49814 | 87.4 | 167 | 21 | 0 | 1 | 167 | 150 | 316 | 1.4e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30682.t1 | A0A072U8Y2 | 99.4 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 1.7e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05316 | MS.gene30682 | 0.812587 | 3.93E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene30682 | 0.800169 | 1.64E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30682.t1 | MTR_6g048440 | 99.401 | 167 | 1 | 0 | 1 | 167 | 147 | 313 | 4.68e-122 | 346 |
| MS.gene30682.t1 | MTR_6g048440 | 99.296 | 142 | 1 | 0 | 1 | 142 | 147 | 288 | 3.68e-102 | 296 |
| MS.gene30682.t1 | MTR_1g100070 | 88.623 | 167 | 19 | 0 | 1 | 167 | 130 | 296 | 6.23e-102 | 295 |
| MS.gene30682.t1 | MTR_1g100070 | 77.487 | 191 | 19 | 1 | 1 | 167 | 130 | 320 | 1.69e-96 | 282 |
| MS.gene30682.t1 | MTR_6g048440 | 99.194 | 124 | 1 | 0 | 1 | 124 | 147 | 270 | 5.07e-88 | 259 |
| MS.gene30682.t1 | MTR_1g100070 | 88.710 | 124 | 14 | 0 | 1 | 124 | 130 | 253 | 8.29e-79 | 236 |
| MS.gene30682.t1 | MTR_6g048440 | 100.000 | 81 | 0 | 0 | 1 | 81 | 147 | 227 | 1.06e-54 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30682.t1 | AT4G25700 | 84.431 | 167 | 26 | 0 | 1 | 167 | 135 | 301 | 5.48e-105 | 303 |
| MS.gene30682.t1 | AT5G52570 | 86.061 | 165 | 23 | 0 | 1 | 165 | 133 | 297 | 1.15e-96 | 281 |
| MS.gene30682.t1 | AT4G25700 | 86.420 | 81 | 11 | 0 | 1 | 81 | 135 | 215 | 2.01e-47 | 154 |
| MS.gene30682.t1 | AT4G25700 | 86.420 | 81 | 11 | 0 | 1 | 81 | 135 | 215 | 2.01e-47 | 154 |
| MS.gene30682.t1 | AT5G52570 | 84.884 | 86 | 13 | 0 | 80 | 165 | 143 | 228 | 9.04e-41 | 137 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAGTTATATATGAAAA+TGG | + | 42987:3768-3787 | MS.gene30682:intron | 10.0% |
| !! | AATAAAAAAAAATGGAAAAT+TGG | - | 42987:1909-1928 | MS.gene30682:intergenic | 10.0% |
| !! | AATTTATCATAGAAAAATTT+AGG | - | 42987:3530-3549 | MS.gene30682:intergenic | 10.0% |
| !! | AGAAAAAATTATAAGAAAAT+TGG | + | 42987:3675-3694 | MS.gene30682:intron | 10.0% |
| !!! | AAAAATATTAGAGTTTTATA+TGG | + | 42987:3619-3638 | MS.gene30682:intron | 10.0% |
| !!! | AAATTTTTCTATGATAAATT+TGG | + | 42987:3530-3549 | MS.gene30682:intron | 10.0% |
| !!! | AATTTTTTAGTTAATTTTGT+TGG | - | 42987:3737-3756 | MS.gene30682:intergenic | 10.0% |
| !!! | AATTTTTTTTTCTACTTTTA+GGG | - | 42987:2433-2452 | MS.gene30682:intergenic | 10.0% |
| !!! | ATTTTTTAGTTAATTTTGTT+GGG | - | 42987:3736-3755 | MS.gene30682:intergenic | 10.0% |
| !! | AAACATTAAAAAAAATACGA+AGG | - | 42987:5011-5030 | MS.gene30682:intergenic | 15.0% |
| !! | AAATCAAACAAATATTCATA+TGG | - | 42987:2814-2833 | MS.gene30682:intergenic | 15.0% |
| !! | AATCAAACAAATATTCATAT+GGG | - | 42987:2813-2832 | MS.gene30682:intergenic | 15.0% |
| !! | ACTAATGTATATAAGAAAAT+TGG | - | 42987:1943-1962 | MS.gene30682:intergenic | 15.0% |
| !! | ATTCTTGATAAGAAAATTAT+TGG | - | 42987:4318-4337 | MS.gene30682:intergenic | 15.0% |
| !! | CAATAGTTATTAATCTATTA+TGG | + | 42987:4488-4507 | MS.gene30682:intron | 15.0% |
| !! | TACAATATTTAAATAACCAA+TGG | + | 42987:2851-2870 | MS.gene30682:intron | 15.0% |
| !!! | AAATATGAATCGAAAATTTT+AGG | + | 42987:4080-4099 | MS.gene30682:intron | 15.0% |
| !!! | AATTATTTTAATTTGAGAGT+TGG | + | 42987:2490-2509 | MS.gene30682:intron | 15.0% |
| !!! | AATTTTCTTATATACATTAG+TGG | + | 42987:1942-1961 | MS.gene30682:intron | 15.0% |
| !!! | ATTATTTTAATTTGAGAGTT+GGG | + | 42987:2491-2510 | MS.gene30682:intron | 15.0% |
| !!! | ATTTTTTTTTCTACTTTTAG+GGG | - | 42987:2432-2451 | MS.gene30682:intergenic | 15.0% |
| !!! | GAAAAAGTTTTTTTTTTTTG+TGG | + | 42987:3856-3875 | MS.gene30682:intron | 15.0% |
| !!! | GAATTTTTTTTTCTACTTTT+AGG | - | 42987:2434-2453 | MS.gene30682:intergenic | 15.0% |
| !!! | TATTATACCAACAAAATTTT+AGG | + | 42987:4197-4216 | MS.gene30682:intron | 15.0% |
| !!! | TATTTGTTAGAGATTAAATT+GGG | + | 42987:3649-3668 | MS.gene30682:intron | 15.0% |
| !!! | TATTTGTTTGATTTTGATTT+TGG | + | 42987:2820-2839 | MS.gene30682:intron | 15.0% |
| !!! | TCACATTTTAATATTTAACT+AGG | - | 42987:4153-4172 | MS.gene30682:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTGTTTTGA+AGG | - | 42987:3830-3849 | MS.gene30682:intergenic | 15.0% |
| !!! | TTATTTGTTAGAGATTAAAT+TGG | + | 42987:3648-3667 | MS.gene30682:intron | 15.0% |
| !!! | TTTTTTAGTTAATTTTGTTG+GGG | - | 42987:3735-3754 | MS.gene30682:intergenic | 15.0% |
| !!! | TTTTTTATCAAGTGTATTTT+TGG | + | 42987:2185-2204 | MS.gene30682:intron | 15.0% |
| !! | AAAAATGAAAAGTTGAACAA+AGG | - | 42987:3994-4013 | MS.gene30682:intergenic | 20.0% |
| !! | AAAATACACAAATAGAAGAT+TGG | + | 42987:2075-2094 | MS.gene30682:intron | 20.0% |
| !! | AAAATTAGTTAAAGCAAACA+AGG | - | 42987:2746-2765 | MS.gene30682:intergenic | 20.0% |
| !! | AAACAGAAAAACACTAAAAT+AGG | - | 42987:3945-3964 | MS.gene30682:intergenic | 20.0% |
| !! | AAGTTAAAAACAAAACAGAA+AGG | - | 42987:3153-3172 | MS.gene30682:intergenic | 20.0% |
| !! | AATAAAAGACAAGAAAATCA+TGG | - | 42987:4894-4913 | MS.gene30682:intergenic | 20.0% |
| !! | ACAAAATCAATCGAATATAT+TGG | + | 42987:5034-5053 | MS.gene30682:intron | 20.0% |
| !! | ATGATCTAAACATTTATCAT+TGG | - | 42987:3177-3196 | MS.gene30682:intergenic | 20.0% |
| !! | ATTAGGTATTTGATTATGTT+TGG | + | 42987:4850-4869 | MS.gene30682:intron | 20.0% |
| !! | CAATGAAAACCATAAATTAA+GGG | - | 42987:3100-3119 | MS.gene30682:intergenic | 20.0% |
| !! | GTATATGTTTAAATTATCAG+TGG | - | 42987:2284-2303 | MS.gene30682:intergenic | 20.0% |
| !! | TATCTTAACAACAAAAAAAG+TGG | - | 42987:2033-2052 | MS.gene30682:intergenic | 20.0% |
| !! | TATTTAAATAACCAATGGTT+AGG | + | 42987:2856-2875 | MS.gene30682:intron | 20.0% |
| !! | TGATAAAGAATGTTATGATA+AGG | - | 42987:4784-4803 | MS.gene30682:intergenic | 20.0% |
| !! | TGATGAGTGATAAATAAATA+TGG | + | 42987:5153-5172 | MS.gene30682:intron | 20.0% |
| !! | TTAGGTATTTGATTATGTTT+GGG | + | 42987:4851-4870 | MS.gene30682:intron | 20.0% |
| !! | TTCTTATCAAGAATTGAATT+TGG | + | 42987:4324-4343 | MS.gene30682:intron | 20.0% |
| !!! | ACTAATTTGTCTTTACTATA+AGG | - | 42987:3571-3590 | MS.gene30682:intergenic | 20.0% |
| !!! | ACTAGGTATATTTAATTTTC+AGG | + | 42987:2547-2566 | MS.gene30682:intron | 20.0% |
| !!! | ATAGTTTAGAACTTGTAATA+GGG | - | 42987:2664-2683 | MS.gene30682:intergenic | 20.0% |
| !!! | ATTAATTGTTTTATTCCTCT+AGG | + | 42987:2003-2022 | MS.gene30682:intron | 20.0% |
| !!! | CTAAACTATCCAATAATTTT+TGG | + | 42987:2675-2694 | MS.gene30682:intron | 20.0% |
| !!! | CTTTTAGAAGTCTTTTTTTA+GGG | + | 42987:2457-2476 | MS.gene30682:intron | 20.0% |
| !!! | GTGTGTACATTATTAATTTT+GGG | + | 42987:2513-2532 | MS.gene30682:intron | 20.0% |
| !!! | TCTTTTAATCTAGTTCAATT+AGG | + | 42987:4047-4066 | MS.gene30682:intron | 20.0% |
| !!! | TCTTTTAGAAGTCTTTTTTT+AGG | + | 42987:2456-2475 | MS.gene30682:intron | 20.0% |
| !!! | TTTTAGAAGTCTTTTTTTAG+GGG | + | 42987:2458-2477 | MS.gene30682:intron | 20.0% |
| !!! | TTTTGTTGACCAAAAATTAT+TGG | - | 42987:2687-2706 | MS.gene30682:intergenic | 20.0% |
| ! | AAGGATAAGAAATTACTTTG+TGG | - | 42987:4765-4784 | MS.gene30682:intergenic | 25.0% |
| ! | AGGATAAGAAATTACTTTGT+GGG | - | 42987:4764-4783 | MS.gene30682:intergenic | 25.0% |
| ! | ATGTTTAAATTATCAGTGGT+GGG | - | 42987:2280-2299 | MS.gene30682:intergenic | 25.0% |
| ! | CCAATGAAAACCATAAATTA+AGG | - | 42987:3101-3120 | MS.gene30682:intergenic | 25.0% |
| ! | GTAACGTATAACTAAATGTT+AGG | + | 42987:4174-4193 | MS.gene30682:intron | 25.0% |
| ! | TAGGTATTTGATTATGTTTG+GGG | + | 42987:4852-4871 | MS.gene30682:intron | 25.0% |
| ! | TATGTTTAAATTATCAGTGG+TGG | - | 42987:2281-2300 | MS.gene30682:intergenic | 25.0% |
| ! | TCTTTACTATAAGGCTATTT+AGG | - | 42987:3562-3581 | MS.gene30682:intergenic | 25.0% |
| ! | TTGTAATAGGGGAAATTAAT+TGG | - | 42987:2652-2671 | MS.gene30682:intergenic | 25.0% |
| !! | CCTTAATTTATGGTTTTCAT+TGG | + | 42987:3098-3117 | MS.gene30682:intron | 25.0% |
| !! | GATAGTTTAGAACTTGTAAT+AGG | - | 42987:2665-2684 | MS.gene30682:intergenic | 25.0% |
| !! | GATCTTTACTCTTTTTCTAT+AGG | + | 42987:3697-3716 | MS.gene30682:intron | 25.0% |
| !! | GGTGTGTACATTATTAATTT+TGG | + | 42987:2512-2531 | MS.gene30682:intron | 25.0% |
| !! | TAGTTTAGAACTTGTAATAG+GGG | - | 42987:2663-2682 | MS.gene30682:intergenic | 25.0% |
| !! | TTTAAAATTCACGAACAACT+CGG | - | 42987:3222-3241 | MS.gene30682:intergenic | 25.0% |
| !!! | AACACTTGTCACTTTTTTAT+AGG | + | 42987:4105-4124 | MS.gene30682:intron | 25.0% |
| !!! | AATTTTGGAATTTGCATGTT+TGG | + | 42987:3889-3908 | MS.gene30682:intron | 25.0% |
| !!! | AGGTATATTTAATTTTCAGG+TGG | + | 42987:2550-2569 | MS.gene30682:intron | 25.0% |
| !!! | ATACCAACAAAATTTTAGGT+AGG | + | 42987:4201-4220 | MS.gene30682:intron | 25.0% |
| !!! | CACTATAGATTTTAACATGA+GGG | - | 42987:4550-4569 | MS.gene30682:intergenic | 25.0% |
| !!! | CTATTTTTTTAACTCGAGTT+CGG | - | 42987:3249-3268 | MS.gene30682:intergenic | 25.0% |
| !!! | GGTATATTTAATTTTCAGGT+GGG | + | 42987:2551-2570 | MS.gene30682:intron | 25.0% |
| !!! | TCACTATAGATTTTAACATG+AGG | - | 42987:4551-4570 | MS.gene30682:intergenic | 25.0% |
| !!! | TTTGAATTTTGAAGCATGTT+TGG | - | 42987:2723-2742 | MS.gene30682:intergenic | 25.0% |
| !!! | TTTTTGTTTGTGTCTTGTTA+AGG | - | 42987:4402-4421 | MS.gene30682:intergenic | 25.0% |
| AAAAAAAGTGGAAATCCTAG+AGG | - | 42987:2021-2040 | MS.gene30681:intergenic | 30.0% | |
| AAAACAAAACAGAAAGGTCA+CGG | - | 42987:3147-3166 | MS.gene30681:intergenic | 30.0% | |
| AACACTTATTAGCATGATCT+AGG | - | 42987:3363-3382 | MS.gene30681:intergenic | 30.0% | |
| ACACTTATTAGCATGATCTA+GGG | - | 42987:3362-3381 | MS.gene30681:intergenic | 30.0% | |
| ACCATTCAGACAAATTTGAT+GGG | + | 42987:4922-4941 | MS.gene30682:CDS | 30.0% | |
| ATACACAAATAGAAGATTGG+TGG | + | 42987:2078-2097 | MS.gene30682:intron | 30.0% | |
| ATCAAATAGTTCCTAACCAT+TGG | - | 42987:2870-2889 | MS.gene30682:intergenic | 30.0% | |
| GAAAATGGAAGTGAAAACAT+GGG | + | 42987:3783-3802 | MS.gene30682:intron | 30.0% | |
| GATAAATAAATATGGTGTGC+AGG | + | 42987:5161-5180 | MS.gene30682:intron | 30.0% | |
| TAATCGCACTAAAGTACATT+AGG | - | 42987:4516-4535 | MS.gene30682:intergenic | 30.0% | |
| TATCACTCATCAGTTATCAT+AGG | - | 42987:5145-5164 | MS.gene30682:intergenic | 30.0% | |
| TATGTGTCTCCCTTAATTTA+TGG | + | 42987:3088-3107 | MS.gene30682:intron | 30.0% | |
| TCAAATGAGATAAACACAAG+TGG | - | 42987:2106-2125 | MS.gene30682:intergenic | 30.0% | |
| TGAAAATGGAAGTGAAAACA+TGG | + | 42987:3782-3801 | MS.gene30682:intron | 30.0% | |
| TGTGAAAGAAACCAAAGTTA+AGG | - | 42987:3035-3054 | MS.gene30682:intergenic | 30.0% | |
| TTCTCACGAATAAATCATTG+TGG | + | 42987:4348-4367 | MS.gene30682:intron | 30.0% | |
| TTTGGGCAATAAATTCAACT+AGG | + | 42987:2530-2549 | MS.gene30682:intron | 30.0% | |
| ! | AACTTTGGTTTCTTTCACAA+AGG | + | 42987:3036-3055 | MS.gene30682:CDS | 30.0% |
| ! | CATGCTAATAAGTGTTTCTA+AGG | + | 42987:3367-3386 | MS.gene30682:intron | 30.0% |
| ! | GTTCCTACCTAAAATTTTGT+TGG | - | 42987:4207-4226 | MS.gene30682:intergenic | 30.0% |
| ! | TGATTATGTTTGGGGTATAA+AGG | + | 42987:4860-4879 | MS.gene30682:intron | 30.0% |
| !! | TAATAAGTGTTTCTAAGGCA+TGG | + | 42987:3372-3391 | MS.gene30682:intron | 30.0% |
| !! | TACATTTCTTGGTTTGTCTT+AGG | + | 42987:3916-3935 | MS.gene30682:intron | 30.0% |
| !! | TATAGATTTTAACATGAGGG+AGG | - | 42987:4547-4566 | MS.gene30682:intergenic | 30.0% |
| !!! | ATTTAATTTTCAGGTGGGAA+TGG | + | 42987:2556-2575 | MS.gene30682:intron | 30.0% |
| AAACAAAACAGAAAGGTCAC+GGG | - | 42987:3146-3165 | MS.gene30681:intergenic | 35.0% | |
| AACAAGTGTCATAAGAACAC+TGG | - | 42987:3500-3519 | MS.gene30681:intergenic | 35.0% | |
| AAGAATACAGCTCTTACCTT+TGG | - | 42987:4972-4991 | MS.gene30681:intergenic | 35.0% | |
| AGCTAGAGAAAGAGATAAGT+AGG | + | 42987:5211-5230 | MS.gene30682:CDS | 35.0% | |
| ATTTCATGCACACTTTGTGA+TGG | + | 42987:4016-4035 | MS.gene30682:intron | 35.0% | |
| CACCATTCAGACAAATTTGA+TGG | + | 42987:4921-4940 | MS.gene30682:CDS | 35.0% | |
| CCATTCAGACAAATTTGATG+GGG | + | 42987:4923-4942 | MS.gene30682:CDS | 35.0% | |
| GTCTTGGAATTACGGTATTT+GGG | + | 42987:4644-4663 | MS.gene30682:CDS | 35.0% | |
| GTTAGGAACTATTTGATACG+TGG | + | 42987:2873-2892 | MS.gene30682:intron | 35.0% | |
| GTTCATAGAAGATTCTCAGT+GGG | + | 42987:4697-4716 | MS.gene30682:CDS | 35.0% | |
| TAGAGAAAGAGATAAGTAGG+AGG | + | 42987:5214-5233 | MS.gene30682:CDS | 35.0% | |
| TCTTGTTAAGGAATGTCTCT+AGG | - | 42987:4390-4409 | MS.gene30682:intergenic | 35.0% | |
| TGGTTTCTTTCACAAAGGAT+TGG | + | 42987:3041-3060 | MS.gene30682:CDS | 35.0% | |
| TTAATAATTCAGAGTCCGAG+AGG | + | 42987:4275-4294 | MS.gene30682:intron | 35.0% | |
| ! | TGTGGCTTGAAGCTAAATTT+TGG | + | 42987:3874-3893 | MS.gene30682:intron | 35.0% |
| ! | TGTTTGGTGGATACATTTCT+TGG | + | 42987:3905-3924 | MS.gene30682:intron | 35.0% |
| ! | TTTGGAATTTGCATGTTTGG+TGG | + | 42987:3892-3911 | MS.gene30682:intron | 35.0% |
| ! | TTTTATAGGCAAGAGGTTGT+CGG | + | 42987:4119-4138 | MS.gene30682:intron | 35.0% |
| !!! | GTCACTTTTTTATAGGCAAG+AGG | + | 42987:4112-4131 | MS.gene30682:intron | 35.0% |
| AAACTTTACGCATCTCCTCT+CGG | - | 42987:4293-4312 | MS.gene30681:intergenic | 40.0% | |
| AAATAGGGCACATTGGCAAT+GGG | - | 42987:4724-4743 | MS.gene30681:intergenic | 40.0% | |
| AAGACCCTGCTCGTAAATAA+GGG | - | 42987:4629-4648 | MS.gene30681:intergenic | 40.0% | |
| CAATGTGCCCTATTTCAGAA+GGG | + | 42987:4729-4748 | MS.gene30682:CDS | 40.0% | |
| CATGTTTGTACACGATGGAT+TGG | + | 42987:4675-4694 | MS.gene30682:CDS | 40.0% | |
| CCCCATCAAATTTGTCTGAA+TGG | - | 42987:4926-4945 | MS.gene30682:intergenic | 40.0% | |
| GGTACATTTGCTCTATCAGT+GGG | + | 42987:1869-1888 | MS.gene30682:CDS | 40.0% | |
| GGTCTTGGAATTACGGTATT+TGG | + | 42987:4643-4662 | MS.gene30682:CDS | 40.0% | |
| GGTTCATAGAAGATTCTCAG+TGG | + | 42987:4696-4715 | MS.gene30682:CDS | 40.0% | |
| TCCATCGTGTACAAACATGT+AGG | - | 42987:4674-4693 | MS.gene30682:intergenic | 40.0% | |
| TCCTTCTCTTGCTCTATGAT+GGG | - | 42987:2956-2975 | MS.gene30682:intergenic | 40.0% | |
| TGGAATTACGGTATTTGGGA+TGG | + | 42987:4648-4667 | MS.gene30682:CDS | 40.0% | |
| TGGTACATTTGCTCTATCAG+TGG | + | 42987:1868-1887 | MS.gene30682:CDS | 40.0% | |
| ! | AAATTTGATGGGGTGCCATA+TGG | + | 42987:4933-4952 | MS.gene30682:CDS | 40.0% |
| ! | AATTTGATGGGGTGCCATAT+GGG | + | 42987:4934-4953 | MS.gene30682:CDS | 40.0% |
| ! | GGTGGGATTGTCAAGAATTT+TGG | - | 42987:2263-2282 | MS.gene30682:intergenic | 40.0% |
| ! | TTATTAGCATGATCTAGGGC+AGG | - | 42987:3358-3377 | MS.gene30682:intergenic | 40.0% |
| !!! | AATGGAGTTTTGGGCTAGAT+GGG | + | 42987:2574-2593 | MS.gene30682:CDS | 40.0% |
| AAGTTAAGGAGAGCGATAGC+AGG | - | 42987:3021-3040 | MS.gene30681:intergenic | 45.0% | |
| ATATGGTGTGCAGGAACTTG+AGG | + | 42987:5170-5189 | MS.gene30682:intron | 45.0% | |
| ATGGGTCTTGCTTCAACTTG+TGG | - | 42987:2795-2814 | MS.gene30682:intergenic | 45.0% | |
| CAAGACCCTGCTCGTAAATA+AGG | - | 42987:4630-4649 | MS.gene30682:intergenic | 45.0% | |
| CCAATGTGCCCTATTTCAGA+AGG | + | 42987:4728-4747 | MS.gene30682:CDS | 45.0% | |
| CTCCTTCTCTTGCTCTATGA+TGG | - | 42987:2957-2976 | MS.gene30682:intergenic | 45.0% | |
| CTTATTTACGAGCAGGGTCT+TGG | + | 42987:4628-4647 | MS.gene30682:intron | 45.0% | |
| GAAATAGGGCACATTGGCAA+TGG | - | 42987:4725-4744 | MS.gene30682:intergenic | 45.0% | |
| GCCTACATGTTTGTACACGA+TGG | + | 42987:4670-4689 | MS.gene30682:CDS | 45.0% | |
| GCTATCGCTCTCCTTAACTT+TGG | + | 42987:3021-3040 | MS.gene30682:CDS | 45.0% | |
| TCCCATCATAGAGCAAGAGA+AGG | + | 42987:2952-2971 | MS.gene30682:CDS | 45.0% | |
| ! | GTCACCCTTATTTACGAGCA+GGG | + | 42987:4622-4641 | MS.gene30682:intron | 45.0% |
| ! | TCAGGTGGGAATGGAGTTTT+GGG | + | 42987:2565-2584 | MS.gene30682:intron | 45.0% |
| ! | TGTCACCCTTATTTACGAGC+AGG | + | 42987:4621-4640 | MS.gene30682:intron | 45.0% |
| ! | TTCAGGTGGGAATGGAGTTT+TGG | + | 42987:2564-2583 | MS.gene30682:intron | 45.0% |
| !! | CCTTCTGAAATAGGGCACAT+TGG | - | 42987:4731-4750 | MS.gene30682:intergenic | 45.0% |
| !! | GCAGCTACCCTTCTGAAATA+GGG | - | 42987:4739-4758 | MS.gene30682:intergenic | 45.0% |
| !! | GTTTTCATTGGCTACCCTTG+CGG | + | 42987:3110-3129 | MS.gene30682:intron | 45.0% |
| !! | TGCAGCTACCCTTCTGAAAT+AGG | - | 42987:4740-4759 | MS.gene30682:intergenic | 45.0% |
| !! | TTTCACAAAGGATTGGTCCC+TGG | + | 42987:3048-3067 | MS.gene30682:CDS | 45.0% |
| !!! | GAATGGAGTTTTGGGCTAGA+TGG | + | 42987:2573-2592 | MS.gene30682:CDS | 45.0% |
| !!! | GTGCCATATGGGCTGTTTTT+GGG | + | 42987:4945-4964 | MS.gene30682:CDS | 45.0% |
| !! | ATTATCAAAATAAAAAAAAA+TGG | - | 42987:1917-1936 | MS.gene30682:intergenic | 5.0% |
| !! | CTATTATTATTATTATTATT+AGG | + | 42987:4833-4852 | MS.gene30682:intron | 5.0% |
| AGGAACTTGAGGAAGTGGGA+GGG | + | 42987:5181-5200 | MS.gene30682:intron | 50.0% | |
| CGAGCAGGGTCTTGGAATTA+CGG | + | 42987:4636-4655 | MS.gene30682:intron | 50.0% | |
| CTCTTTGGCATGCTTCCTTG+TGG | + | 42987:2606-2625 | MS.gene30682:CDS | 50.0% | |
| GGTCCCAAAAACAGCCCATA+TGG | - | 42987:4951-4970 | MS.gene30682:intergenic | 50.0% | |
| GTGCAGGAACTTGAGGAAGT+GGG | + | 42987:5177-5196 | MS.gene30682:intron | 50.0% | |
| TACCTCATGCATGTGCCACA+AGG | - | 42987:2624-2643 | MS.gene30682:intergenic | 50.0% | |
| TGTGCAGGAACTTGAGGAAG+TGG | + | 42987:5176-5195 | MS.gene30682:intron | 50.0% | |
| TTCCTTGTGGCACATGCATG+AGG | + | 42987:2619-2638 | MS.gene30682:CDS | 50.0% | |
| ! | TTGGTCCCTGGTCTTTGCTT+TGG | + | 42987:3060-3079 | MS.gene30682:CDS | 50.0% |
| !! | GGTGCCATATGGGCTGTTTT+TGG | + | 42987:4944-4963 | MS.gene30682:CDS | 50.0% |
| !!! | TGGGCTGTTTTTGGGACCAA+AGG | + | 42987:4953-4972 | MS.gene30682:CDS | 50.0% |
| ACCGCACCAAAGCAAAGACC+AGG | - | 42987:3069-3088 | MS.gene30682:intergenic | 55.0% | |
| ATTGGCTACCCTTGCGGTGA+AGG | + | 42987:3116-3135 | MS.gene30682:intron | 55.0% | |
| CAGGAACTTGAGGAAGTGGG+AGG | + | 42987:5180-5199 | MS.gene30682:intron | 55.0% | |
| CCGCACCAAAGCAAAGACCA+GGG | - | 42987:3068-3087 | MS.gene30682:intergenic | 55.0% | |
| TTGGCTACCCTTGCGGTGAA+GGG | + | 42987:3117-3136 | MS.gene30682:intron | 55.0% | |
| ! | CCCTGGTCTTTGCTTTGGTG+CGG | + | 42987:3065-3084 | MS.gene30682:CDS | 55.0% |
| ! | GATGGGCTCACAAGGCTCTT+TGG | + | 42987:2591-2610 | MS.gene30682:CDS | 55.0% |
| ! | TTGGGCTAGATGGGCTCACA+AGG | + | 42987:2583-2602 | MS.gene30682:CDS | 55.0% |
| ACGGGTAACCCTTCACCGCA+AGG | - | 42987:3128-3147 | MS.gene30682:intergenic | 60.0% | |
| CGGGTAACCCTTCACCGCAA+GGG | - | 42987:3127-3146 | MS.gene30682:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42987 | gene | 1863 | 5260 | 1863 | ID=MS.gene30682 |
| 42987 | mRNA | 1863 | 5260 | 1863 | ID=MS.gene30682.t1;Parent=MS.gene30682 |
| 42987 | exon | 1863 | 1898 | 1863 | ID=MS.gene30682.t1.exon1;Parent=MS.gene30682.t1 |
| 42987 | CDS | 1863 | 1898 | 1863 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| 42987 | exon | 2569 | 2640 | 2569 | ID=MS.gene30682.t1.exon2;Parent=MS.gene30682.t1 |
| 42987 | CDS | 2569 | 2640 | 2569 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| 42987 | exon | 2952 | 3086 | 2952 | ID=MS.gene30682.t1.exon3;Parent=MS.gene30682.t1 |
| 42987 | CDS | 2952 | 3086 | 2952 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| 42987 | exon | 4643 | 4768 | 4643 | ID=MS.gene30682.t1.exon4;Parent=MS.gene30682.t1 |
| 42987 | CDS | 4643 | 4768 | 4643 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| 42987 | exon | 4918 | 4974 | 4918 | ID=MS.gene30682.t1.exon5;Parent=MS.gene30682.t1 |
| 42987 | CDS | 4918 | 4974 | 4918 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| 42987 | exon | 5183 | 5260 | 5183 | ID=MS.gene30682.t1.exon6;Parent=MS.gene30682.t1 |
| 42987 | CDS | 5183 | 5260 | 5183 | ID=cds.MS.gene30682.t1;Parent=MS.gene30682.t1 |
| Gene Sequence |
| Protein sequence |
