AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30741

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30741.t1 MTR_3g073590 96.340 765 20 1 1 765 46 802 0.0 1503
MS.gene30741.t1 MTR_5g061340 57.860 757 228 11 15 764 302 974 0.0 835
MS.gene30741.t1 MTR_1g035690 41.139 474 271 6 296 764 129 599 6.57e-122 379
MS.gene30741.t1 MTR_8g033290 41.314 472 272 5 295 764 154 622 1.04e-119 374
MS.gene30741.t1 MTR_8g078760 30.734 218 140 3 556 765 404 618 1.44e-22 103
MS.gene30741.t1 MTR_5g018820 36.000 150 89 1 553 695 398 547 1.32e-20 97.1
MS.gene30741.t1 MTR_8g079840 34.682 173 101 5 556 722 379 545 3.65e-19 92.4
MS.gene30741.t1 MTR_3g101340 32.184 174 104 3 556 722 321 487 1.59e-18 90.1
MS.gene30741.t1 MTR_3g101340 32.184 174 104 3 556 722 347 513 1.67e-18 90.1
MS.gene30741.t1 MTR_3g101340 30.220 182 105 3 556 722 346 520 2.74e-18 89.7
MS.gene30741.t1 MTR_5g066810 68.519 54 17 0 711 764 10 63 3.01e-18 79.7
MS.gene30741.t1 MTR_4g068920 34.211 152 93 2 552 696 407 558 1.11e-17 87.8
MS.gene30741.t1 MTR_5g017790 30.693 202 127 6 528 722 299 494 2.62e-17 86.3
MS.gene30741.t1 MTR_5g017790 30.693 202 127 6 528 722 287 482 2.94e-17 86.3
MS.gene30741.t1 MTR_1g021040 31.548 168 106 3 559 722 333 495 4.56e-17 85.5
MS.gene30741.t1 MTR_8g078760 36.800 125 72 1 556 673 404 528 2.71e-16 83.2
MS.gene30741.t1 MTR_5g012790 31.765 170 101 3 543 699 345 512 1.03e-15 81.6
MS.gene30741.t1 MTR_5g079910 30.729 192 125 4 552 740 289 475 1.18e-13 74.7
MS.gene30741.t1 MTR_4g058015 27.706 231 145 7 552 765 462 687 4.03e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30741.t1 AT4G08550 62.522 571 192 4 196 764 140 690 0.0 719
MS.gene30741.t1 AT4G08550 55.692 571 177 6 196 764 140 636 0.0 608
MS.gene30741.t1 AT3G11920 39.413 477 280 5 295 764 155 629 1.56e-115 363
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 391 559 9.61e-24 107
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 391 559 9.61e-24 107
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 391 559 9.61e-24 107
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 391 559 9.61e-24 107
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 391 559 9.61e-24 107
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 371 539 1.07e-23 106
MS.gene30741.t1 AT5G66600 33.721 172 105 2 556 721 337 505 1.16e-23 106
MS.gene30741.t1 AT1G16750 30.081 246 134 7 545 765 293 525 6.38e-23 103
MS.gene30741.t1 AT3G13000 31.280 211 124 7 545 743 314 515 7.02e-22 100
MS.gene30741.t1 AT3G13000 31.280 211 124 7 545 743 343 544 7.31e-22 100
MS.gene30741.t1 AT3G13000 31.280 211 124 7 545 743 343 544 7.31e-22 100
MS.gene30741.t1 AT2G23700 30.594 219 140 5 556 765 484 699 6.08e-20 95.5
MS.gene30741.t1 AT5G66600 38.710 124 70 1 556 673 391 514 1.60e-18 90.1
MS.gene30741.t1 AT5G66600 38.710 124 70 1 556 673 391 514 1.60e-18 90.1
MS.gene30741.t1 AT5G66600 38.710 124 70 1 556 673 391 514 1.60e-18 90.1
MS.gene30741.t1 AT5G66600 38.710 124 70 1 556 673 391 514 1.60e-18 90.1
MS.gene30741.t1 AT4G37080 32.948 173 104 5 556 722 392 558 2.88e-18 89.7
MS.gene30741.t1 AT4G37080 32.948 173 104 5 556 722 392 558 2.88e-18 89.7
MS.gene30741.t1 AT4G37080 32.948 173 104 5 556 722 379 545 3.91e-18 89.4
MS.gene30741.t1 AT5G42690 32.558 172 106 4 555 722 295 460 1.13e-17 87.4
MS.gene30741.t1 AT5G42690 32.558 172 106 4 555 722 270 435 1.23e-17 87.0
MS.gene30741.t1 AT5G42690 32.558 172 106 4 555 722 321 486 1.25e-17 87.4
MS.gene30741.t1 AT5G42690 32.558 172 106 4 555 722 322 487 1.28e-17 87.4
MS.gene30741.t1 AT5G42690 32.558 172 106 4 555 722 322 487 1.28e-17 87.4
MS.gene30741.t1 AT5G47380 34.682 173 96 4 553 713 359 526 2.76e-17 86.7
MS.gene30741.t1 AT5G47380 33.898 177 100 4 553 717 359 530 2.85e-17 86.7
MS.gene30741.t1 AT5G47380 34.682 173 96 4 553 713 303 470 3.06e-17 86.3
MS.gene30741.t1 AT3G18900 31.098 164 105 3 540 695 214 377 4.55e-16 82.0
MS.gene30741.t1 AT3G18900 31.098 164 105 3 540 695 214 377 4.55e-16 82.0
MS.gene30741.t1 AT3G18900 31.098 164 105 3 540 695 290 453 5.79e-16 82.0
MS.gene30741.t1 AT3G18900 31.098 164 105 3 540 695 295 458 6.26e-16 82.0
MS.gene30741.t1 AT1G21060 26.957 230 153 6 545 765 266 489 6.26e-14 75.5
MS.gene30741.t1 AT1G21060 26.957 230 153 6 545 765 278 501 8.21e-14 75.1
MS.gene30741.t1 AT1G76620 33.553 152 86 4 556 696 299 446 2.11e-13 73.9
MS.gene30741.t1 AT2G39690 30.952 168 110 3 556 721 307 470 5.51e-13 72.8
MS.gene30741.t1 AT2G39690 30.952 168 110 3 556 721 281 444 7.69e-13 72.0
MS.gene30741.t1 AT2G39690 30.952 168 110 3 556 721 200 363 8.02e-13 71.6
MS.gene30741.t1 AT2G39690 30.357 168 110 3 556 721 307 469 1.19e-12 71.6
MS.gene30741.t1 AT2G39690 30.357 168 110 3 556 721 281 443 2.00e-12 70.9
MS.gene30741.t1 AT1G43020 32.667 150 87 5 556 695 218 363 2.74e-12 70.1
MS.gene30741.t1 AT3G18900 30.986 142 90 3 540 673 295 436 2.76e-12 70.1
MS.gene30741.t1 AT5G47380 35.338 133 71 3 553 673 359 488 4.53e-12 69.7
MS.gene30741.t1 AT5G47380 35.878 131 69 3 553 671 359 486 5.31e-12 69.3
MS.gene30741.t1 AT1G16750 37.374 99 59 1 545 640 293 391 5.48e-12 68.9

Find 170 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCTTAATATAATTTA+AGG 0.073218 3.1:-60245499 None:intergenic
TGCATCAAGGCTGAGATTTC+TGG 0.101988 3.1:+60246864 MS.gene30741:CDS
TTCAATGTCACTGGAGATTT+TGG 0.117947 3.1:+60244940 MS.gene30741:CDS
TTGGAAAGAAGGAAATTATT+TGG 0.198959 3.1:+60247235 MS.gene30741:CDS
TTTAGGTATAGCATAGATTT+TGG 0.208784 3.1:+60248013 MS.gene30741:intron
TCCAAGTGAGGACAACAATT+TGG 0.230260 3.1:+60245176 MS.gene30741:CDS
CATCCATGCAATCTTAATAT+TGG 0.235219 3.1:+60247195 MS.gene30741:CDS
CTTATCAGAAGATCAATATT+TGG 0.236747 3.1:+60246043 MS.gene30741:CDS
AATCCAATATTTCAACTCTT+TGG 0.237090 3.1:-60247120 None:intergenic
ACTATGCTGCGCCGCCTTTC+TGG 0.241084 3.1:+60245354 MS.gene30741:CDS
TCCCTTTCAGCTATTCAAAA+TGG 0.243224 3.1:+60247292 MS.gene30741:CDS
GGAGAGTTCAAATATGTTAT+AGG 0.244778 3.1:+60247256 MS.gene30741:CDS
TTGGTATGTGGCACCCGATC+TGG 0.254719 3.1:+60247553 MS.gene30741:CDS
AATGGCTTCTTAAGGTTATA+TGG 0.266212 3.1:-60247340 None:intergenic
TGCAAAAGATAAACGCTTAA+AGG 0.270667 3.1:+60247366 MS.gene30741:CDS
AGAAGTTAATGAAGCCAAAT+TGG 0.279461 3.1:+60245440 MS.gene30741:CDS
TGGCTTCTCAGAAACCAATT+TGG 0.280981 3.1:-60245454 None:intergenic
GAGCACATCTACCCGTAAAT+TGG 0.283924 3.1:+60245245 MS.gene30741:CDS
CCTGATCTCCATCCAATTTA+CGG 0.285251 3.1:-60245257 None:intergenic
CTTCTTTCCAATGCTCCATC+TGG 0.285483 3.1:-60247223 None:intergenic
CAGTATAATCCTTCCTTTCA+TGG 0.286548 3.1:-60245592 None:intergenic
ATCCTTCCTTTCATGGCTAT+TGG 0.292169 3.1:-60245585 None:intergenic
AATTTGGACCCTGTATTTGA+TGG 0.308860 3.1:+60245192 MS.gene30741:CDS
GCTCCAAAGAGTTGAAATAT+TGG 0.318765 3.1:+60247117 MS.gene30741:CDS
ATATCATCCTCTCCAGAAAA+AGG 0.320824 3.1:-60245888 None:intergenic
TGCGATAGGCTTTGGATTAG+TGG 0.327652 3.1:-60246836 None:intergenic
GCAATTTCTGCGATAGGCTT+TGG 0.331252 3.1:-60246844 None:intergenic
TTCATCAACTGCCCCACTAA+TGG 0.342890 3.1:-60245913 None:intergenic
ATTTGATGGAACCGAGGTTC+CGG 0.359300 3.1:+60245206 MS.gene30741:CDS
GCTTGCCTCTTCTGAATTGA+AGG 0.361482 3.1:+60248111 MS.gene30741:CDS
ACGGAGTTGGAGAAGATATC+TGG 0.363743 3.1:+60245720 MS.gene30741:CDS
ATCCATGCAATCTTAATATT+GGG 0.374358 3.1:+60247196 MS.gene30741:CDS
GACTTCTTAATATAATTTAA+GGG 0.376502 3.1:-60245498 None:intergenic
TAACATTGTGACATCACAAT+TGG 0.376676 3.1:-60246790 None:intergenic
TTTGATGGAACCGAGGTTCC+GGG 0.376989 3.1:+60245207 MS.gene30741:CDS
CTAGATGAAATGCATAGATA+TGG 0.382544 3.1:+60245075 MS.gene30741:CDS
AGATTCTTGACACCCTAGTT+TGG 0.383221 3.1:-60245619 None:intergenic
TCCAAATTGTTGTCCTCACT+TGG 0.389670 3.1:-60245177 None:intergenic
TGCCATTCAGATTGAAGATC+AGG 0.390522 3.1:+60244786 MS.gene30741:CDS
ATGTCAGTAAGATTCTTAAA+TGG 0.394125 3.1:+60247689 MS.gene30741:CDS
TGGTATGTGGCACCCGATCT+GGG 0.395261 3.1:+60247554 MS.gene30741:CDS
GAGGATGATATTTCCATTAG+TGG 0.406602 3.1:+60245900 MS.gene30741:CDS
AGTGAAAATTTATTTGAAGA+TGG 0.410745 3.1:+60246736 MS.gene30741:intron
CCCTAAGTTTGACAGTAAAC+TGG 0.417217 3.1:+60244846 MS.gene30741:CDS
GTCAAGAATCTAGAATATTT+AGG 0.417224 3.1:+60245631 MS.gene30741:CDS
TCCAACTCCGTCTTTCTACC+AGG 0.418763 3.1:-60245708 None:intergenic
TAGTGGGGCAGTTGATGAAT+TGG 0.419111 3.1:+60245917 MS.gene30741:CDS
TTGCACCGAATGGCTTCTTA+AGG 0.419522 3.1:-60247348 None:intergenic
TAGATATGGACTGGATGATT+TGG 0.422931 3.1:+60245089 MS.gene30741:CDS
AGAGTATTCTGGTGGTGATA+AGG 0.425577 3.1:+60245008 MS.gene30741:CDS
TTCATGGCTATTGGTGATGA+TGG 0.432688 3.1:-60245576 None:intergenic
TCCAGTTTACTGTCAAACTT+AGG 0.433560 3.1:-60244847 None:intergenic
ACCTCGGTTCCATCAAATAC+AGG 0.434676 3.1:-60245201 None:intergenic
ACCAAAGCAAAATGAATCAT+AGG 0.439045 3.1:-60247535 None:intergenic
CTGATCTCCATCCAATTTAC+GGG 0.439424 3.1:-60245256 None:intergenic
TCACGAGACCTCCACTTCTC+AGG 0.439974 3.1:-60247642 None:intergenic
TTCCAAGCAGATTTCTCCAC+TGG 0.442084 3.1:-60245474 None:intergenic
ATTATACTGTACACCAAACT+AGG 0.448111 3.1:+60245606 MS.gene30741:CDS
AATGTTGGTAAAGAGTATTC+TGG 0.448696 3.1:+60244997 MS.gene30741:CDS
GCCCTTCGATGCTATTCTCC+TGG 0.451401 3.1:+60247580 MS.gene30741:CDS
AACTGACTCAGCAATATTGT+TGG 0.451636 3.1:+60248084 MS.gene30741:CDS
CCGTAAATTGGATGGAGATC+AGG 0.452393 3.1:+60245257 MS.gene30741:CDS
GCAAAATGAATCATAGGCTC+GGG 0.452440 3.1:-60247529 None:intergenic
AGACATGAAATCCACAGATA+TGG 0.456395 3.1:+60245134 MS.gene30741:CDS
CAGATGGAGCATTGGAAAGA+AGG 0.457598 3.1:+60247224 MS.gene30741:CDS
TTCCGGGGATGGAAGTTAAC+CGG 0.460048 3.1:+60245223 MS.gene30741:CDS
TTCAATGAAATATGTATTGG+AGG 0.465319 3.1:+60245768 MS.gene30741:CDS
TCGAAGGGCAGGCCCAGATC+GGG 0.471322 3.1:-60247566 None:intergenic
CAATATTAAGATTGCATGGA+TGG 0.471965 3.1:-60247194 None:intergenic
TTAGTGGTAATAATACCCTT+TGG 0.474052 3.1:-60246820 None:intergenic
ATCGAAGGGCAGGCCCAGAT+CGG 0.479385 3.1:-60247567 None:intergenic
ATCCTGATCTTCAATCTGAA+TGG 0.479600 3.1:-60244788 None:intergenic
CTTGATGCAATTTCTGCGAT+AGG 0.479925 3.1:-60246850 None:intergenic
AGGTCTCGTGATTGATTTGA+CGG 0.480468 3.1:+60247654 MS.gene30741:CDS
AGGATGATATTTCCATTAGT+GGG 0.486028 3.1:+60245901 MS.gene30741:CDS
AGCAAAATGAATCATAGGCT+CGG 0.489457 3.1:-60247530 None:intergenic
TTTAGCCTCAAAATTTATGT+TGG 0.489491 3.1:-60245037 None:intergenic
TGAATCATAGGCTCGGGGTA+AGG 0.490288 3.1:-60247523 None:intergenic
TAGTTCAAACCCCAGTCATA+AGG 0.490858 3.1:-60248145 None:intergenic
TTGCAGCTTCTCAACCGCTT+GGG 0.498671 3.1:-60244752 None:intergenic
TTGCATGGAAGTGAGGAGTT+CGG 0.506332 3.1:+60246946 MS.gene30741:CDS
CATGGAAGATCAGCATTTGT+TGG 0.507056 3.1:+60244711 None:intergenic
GAAGCCTATGCTATTGAAGA+TGG 0.508503 3.1:+60246901 MS.gene30741:CDS
AACAATATTGCTGAGTCAGT+TGG 0.509252 3.1:-60248082 None:intergenic
CAGTCCAGGTGTGGTTGAGA+AGG 0.509358 3.1:+60245281 MS.gene30741:CDS
GAATCATAGGCTCGGGGTAA+GGG 0.509661 3.1:-60247522 None:intergenic
CTTGCAGCTTCTCAACCGCT+TGG 0.510135 3.1:-60244753 None:intergenic
GGAGAATAGCATCGAAGGGC+AGG 0.510556 3.1:-60247577 None:intergenic
CAGAGGGATTCAGTAACAAA+TGG 0.513968 3.1:+60245552 MS.gene30741:CDS
CAACAAATGCTGATCTTCCA+TGG 0.517186 3.1:-60244710 None:intergenic
ACTGCCTTCTCAACCACACC+TGG 0.521661 3.1:-60245285 None:intergenic
TTACATATCAGCCTTATGAC+TGG 0.523585 3.1:+60248134 MS.gene30741:CDS
CCAGTTTACTGTCAAACTTA+GGG 0.524030 3.1:-60244846 None:intergenic
TATTCAAAATGGAATATTGA+GGG 0.525670 3.1:+60247303 MS.gene30741:CDS
TAAGGTTATATGGAGGTCGT+TGG 0.529342 3.1:-60247330 None:intergenic
TGGAAAACAAAACTGATCAG+AGG 0.529835 3.1:+60245535 MS.gene30741:CDS
AACTTCCATCCCCGGAACCT+CGG 0.530064 3.1:-60245217 None:intergenic
TGGAACCGAGGTTCCGGGGA+TGG 0.530578 3.1:+60245212 MS.gene30741:CDS
TCTCAGAATGTTGTTCATGA+TGG 0.530719 3.1:+60244823 MS.gene30741:CDS
TACATATCAGCCTTATGACT+GGG 0.530867 3.1:+60248135 MS.gene30741:CDS
CAGAAGATCAATATTTGGAA+AGG 0.531565 3.1:+60246048 MS.gene30741:CDS
TCAGCATTTGTTGGAGACAA+AGG 0.531880 3.1:+60244720 MS.gene30741:CDS
ATCCACAGATATGGATCAGA+AGG 0.532025 3.1:+60245143 MS.gene30741:CDS
GACCCAATATTAAGATTGCA+TGG 0.533239 3.1:-60247198 None:intergenic
TCAATTCAGAAGAGGCAAGC+AGG 0.533585 3.1:-60248108 None:intergenic
AGAAAGGCGGCGCAGCATAG+TGG 0.536077 3.1:-60245352 None:intergenic
CACCAATAGCCATGAAAGGA+AGG 0.542926 3.1:+60245583 MS.gene30741:CDS
CGCAATTTCCTGAGAAGTGG+AGG 0.544921 3.1:+60247634 MS.gene30741:CDS
GATTGAAGATCAGGATAAAG+AGG 0.545716 3.1:+60244795 MS.gene30741:CDS
ATTTCAGTTTCAGAATTGAT+CGG 0.549208 3.1:-60244970 None:intergenic
GGTGATGGGGTTTCAAATAA+CGG 0.551236 3.1:-60245864 None:intergenic
AGCCAGTGGAGAAATCTGCT+TGG 0.553500 3.1:+60245472 MS.gene30741:CDS
TTCCAGGAGAATAGCATCGA+AGG 0.554025 3.1:-60247582 None:intergenic
CAATGTTACAATATTCCAAA+GGG 0.554541 3.1:+60246805 MS.gene30741:CDS
GATGGAGATCAGGACAGTCC+AGG 0.555381 3.1:+60245267 MS.gene30741:CDS
GTATTCTGGTGGTGATAAGG+TGG 0.556223 3.1:+60245011 MS.gene30741:CDS
CTCCGGTTAACTTCCATCCC+CGG 0.557145 3.1:-60245225 None:intergenic
TTGAATAGCTGAAAGGGAGT+AGG 0.559780 3.1:-60247287 None:intergenic
GTGATAACAGATGACAATGA+TGG 0.559920 3.1:+60244883 MS.gene30741:CDS
GAAGTCATTTGATGTTGATG+TGG 0.561143 3.1:+60245515 MS.gene30741:CDS
TATAACCTTAAGAAGCCATT+CGG 0.563687 3.1:+60247343 MS.gene30741:CDS
CCCTGGTAGAAAGACGGAGT+TGG 0.563695 3.1:+60245707 MS.gene30741:CDS
TTAATATTGGGTCATCCAGA+TGG 0.565815 3.1:+60247208 MS.gene30741:CDS
ACAGATTGTACAAAATGCGC+AGG 0.567629 3.1:+60245982 MS.gene30741:CDS
TGCCTTCTGATCCATATCTG+TGG 0.567944 3.1:-60245145 None:intergenic
GAAACTGAAATTGATAATGT+TGG 0.569198 3.1:+60244982 MS.gene30741:CDS
ATTTACGGGTAGATGTGCTC+CGG 0.569546 3.1:-60245242 None:intergenic
TACAAGTTTGCATGGAAGTG+AGG 0.571856 3.1:+60246939 MS.gene30741:CDS
ATGGAAGTGAGGAGTTCGGC+AGG 0.573905 3.1:+60246950 MS.gene30741:CDS
AATAGCTGAAAGGGAGTAGG+TGG 0.575549 3.1:-60247284 None:intergenic
ACTCGCAATTTCCTGAGAAG+TGG 0.578546 3.1:+60247631 MS.gene30741:CDS
TTCTGGTGGTGATAAGGTGG+AGG 0.580331 3.1:+60245014 MS.gene30741:CDS
TGAAATGCATAGATATGGAC+TGG 0.582140 3.1:+60245080 MS.gene30741:CDS
TCCAGGAGAATAGCATCGAA+GGG 0.585737 3.1:-60247581 None:intergenic
CTATTCAAAATGGAATATTG+AGG 0.586041 3.1:+60247302 MS.gene30741:CDS
ACAATGTTACAATATTCCAA+AGG 0.587793 3.1:+60246804 MS.gene30741:CDS
TGTAACCTTCAATTCAGAAG+AGG 0.594840 3.1:-60248116 None:intergenic
GGAAAACAAAACTGATCAGA+GGG 0.600988 3.1:+60245536 MS.gene30741:CDS
GTTGATTATACAAGTTTGCA+TGG 0.601412 3.1:+60246931 MS.gene30741:CDS
TCAATATTTGGAAAGGCTAG+AGG 0.606043 3.1:+60246055 MS.gene30741:CDS
TCATCACCAATAGCCATGAA+AGG 0.614646 3.1:+60245579 MS.gene30741:CDS
CCAACTCCGTCTTTCTACCA+GGG 0.616219 3.1:-60245707 None:intergenic
ACATCTACCCGTAAATTGGA+TGG 0.616547 3.1:+60245249 MS.gene30741:CDS
ACATATCAGCCTTATGACTG+GGG 0.619604 3.1:+60248136 MS.gene30741:CDS
GAGTTCAAATATGTTATAGG+TGG 0.620548 3.1:+60247259 MS.gene30741:CDS
GGGTCATCCAGATGGAGCAT+TGG 0.621494 3.1:+60247216 MS.gene30741:CDS
TTGATGGAACCGAGGTTCCG+GGG 0.624334 3.1:+60245208 MS.gene30741:CDS
GGCAGATGAAATTCCAAGTG+AGG 0.627307 3.1:+60245164 MS.gene30741:CDS
CCCTGTATTTGATGGAACCG+AGG 0.628835 3.1:+60245200 MS.gene30741:CDS
TTATACTGTACACCAAACTA+GGG 0.629182 3.1:+60245607 MS.gene30741:CDS
GCATCCATCTTCAATAGCAT+AGG 0.630339 3.1:-60246905 None:intergenic
CTATCGCAGAAATTGCATCA+AGG 0.631626 3.1:+60246851 MS.gene30741:CDS
GGATGATATTTCCATTAGTG+GGG 0.635196 3.1:+60245902 MS.gene30741:CDS
CAGTAAACTGGATGATACAT+CGG 0.636432 3.1:+60244858 MS.gene30741:CDS
TGTATACCCTGGTAGAAAGA+CGG 0.637748 3.1:+60245701 MS.gene30741:CDS
ATTGGTTTCTGAGAAGCCAG+TGG 0.651839 3.1:+60245458 MS.gene30741:CDS
ATTCAAAATGGAATATTGAG+GGG 0.652429 3.1:+60247304 MS.gene30741:CDS
CCTCGGTTCCATCAAATACA+GGG 0.653158 3.1:-60245200 None:intergenic
AGATCAGGACAGTCCAGGTG+TGG 0.655626 3.1:+60245272 MS.gene30741:CDS
GGCTTCTTAAGGTTATATGG+AGG 0.664268 3.1:-60247337 None:intergenic
ATCAACATAGATGTATACCC+TGG 0.667136 3.1:+60245690 MS.gene30741:CDS
TAACAGATGACAATGATGGA+AGG 0.672181 3.1:+60244887 MS.gene30741:CDS
CAAAATGAATCATAGGCTCG+GGG 0.678249 3.1:-60247528 None:intergenic
TGTAAAGGAGAAAAGTGCAG+TGG 0.690641 3.1:+60245323 MS.gene30741:CDS
AAAAGTGATGAAGCTGCTGT+GGG 0.696516 3.1:+60245378 MS.gene30741:CDS
ATAGGCTTCGAACATTGCAG+AGG 0.705917 3.1:-60246887 None:intergenic
AAAGGAAGCAAGTTCCCAAG+CGG 0.717434 3.1:+60244738 MS.gene30741:CDS
TTGGCTAAAGCAGAGAACGA+CGG 0.726344 3.1:+60245108 MS.gene30741:CDS
GTTGGTAAAGAGTATTCTGG+TGG 0.735908 3.1:+60245000 MS.gene30741:CDS
GCAAACTTGTATAATCAACG+CGG 0.798022 3.1:-60246927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGTGTATAAGATATTA+AGG - chr3.1:60247743-60247762 None:intergenic 15.0%
!! ATAATGTATTACATAAAATG+AGG + chr3.1:60246260-60246279 MS.gene30741:intron 15.0%
!! GACTTCTTAATATAATTTAA+GGG - chr3.1:60245501-60245520 None:intergenic 15.0%
!! TAAAAAAAGAAGAAAAACAA+TGG - chr3.1:60246550-60246569 None:intergenic 15.0%
!! TGACTTCTTAATATAATTTA+AGG - chr3.1:60245502-60245521 None:intergenic 15.0%
!!! ATATGATCTTTTAAATCTAT+GGG - chr3.1:60246404-60246423 None:intergenic 15.0%
!!! ATTAAGTATGGAATTTTAAA+AGG - chr3.1:60247789-60247808 None:intergenic 15.0%
!!! TATATGATCTTTTAAATCTA+TGG - chr3.1:60246405-60246424 None:intergenic 15.0%
!!! TTTTTCAATGAAATATGTAT+TGG + chr3.1:60245765-60245784 MS.gene30741:CDS 15.0%
!! AAAAATTGACGAAGAATTAT+TGG + chr3.1:60247603-60247622 MS.gene30741:CDS 20.0%
!! AGTGAAAATTTATTTGAAGA+TGG + chr3.1:60246736-60246755 MS.gene30741:intron 20.0%
!! ATTTCATTGAAAAACAACTT+GGG - chr3.1:60245759-60245778 None:intergenic 20.0%
!! TATTCAAAATGGAATATTGA+GGG + chr3.1:60247303-60247322 MS.gene30741:CDS 20.0%
!! TATTTCATTGAAAAACAACT+TGG - chr3.1:60245760-60245779 None:intergenic 20.0%
!! TTAAATCTATGGGATATTTA+GGG - chr3.1:60246394-60246413 None:intergenic 20.0%
!! TTCTTTCAAATACAATTTGT+AGG + chr3.1:60246340-60246359 MS.gene30741:intron 20.0%
!! TTGAAACATTCAATTAAGTA+TGG - chr3.1:60247801-60247820 None:intergenic 20.0%
!! TTTAAATCTATGGGATATTT+AGG - chr3.1:60246395-60246414 None:intergenic 20.0%
!!! CTTCTTTTTTTAATTTTGTC+TGG + chr3.1:60246558-60246577 MS.gene30741:intron 20.0%
! AATCCAATATTTCAACTCTT+TGG - chr3.1:60247123-60247142 None:intergenic 25.0%
! ACAATGTTACAATATTCCAA+AGG + chr3.1:60246804-60246823 MS.gene30741:CDS 25.0%
! ATACCTAAATATGAACAATG+AGG - chr3.1:60248002-60248021 None:intergenic 25.0%
! ATCCATGCAATCTTAATATT+GGG + chr3.1:60247196-60247215 MS.gene30741:CDS 25.0%
! ATGTCAGTAAGATTCTTAAA+TGG + chr3.1:60247689-60247708 MS.gene30741:CDS 25.0%
! ATTCAAAATGGAATATTGAG+GGG + chr3.1:60247304-60247323 MS.gene30741:CDS 25.0%
! ATTCCTCATTGTTCATATTT+AGG + chr3.1:60247996-60248015 MS.gene30741:intron 25.0%
! ATTTCAGTTTCAGAATTGAT+CGG - chr3.1:60244973-60244992 None:intergenic 25.0%
! CAATGTTACAATATTCCAAA+GGG + chr3.1:60246805-60246824 MS.gene30741:CDS 25.0%
! CTATTCAAAATGGAATATTG+AGG + chr3.1:60247302-60247321 MS.gene30741:CDS 25.0%
! CTTATCAGAAGATCAATATT+TGG + chr3.1:60246043-60246062 MS.gene30741:CDS 25.0%
! GAAAAAAAATTCAATGTCAC+TGG + chr3.1:60244931-60244950 MS.gene30741:CDS 25.0%
! GTTAGAAATTGTGTTTACTT+TGG + chr3.1:60247950-60247969 MS.gene30741:intron 25.0%
! TTCAATGAAATATGTATTGG+AGG + chr3.1:60245768-60245787 MS.gene30741:CDS 25.0%
! TTGGAAAGAAGGAAATTATT+TGG + chr3.1:60247235-60247254 MS.gene30741:CDS 25.0%
! TTTAGCCTCAAAATTTATGT+TGG - chr3.1:60245040-60245059 None:intergenic 25.0%
! TTTGATTACGTATGAATTTG+TGG - chr3.1:60246143-60246162 None:intergenic 25.0%
!! GTCAAGAATCTAGAATATTT+AGG + chr3.1:60245631-60245650 MS.gene30741:CDS 25.0%
!! TTTAGGTATAGCATAGATTT+TGG + chr3.1:60248013-60248032 MS.gene30741:intron 25.0%
!! TTTTACGTACAAAAAGACTT+AGG + chr3.1:60245658-60245677 MS.gene30741:CDS 25.0%
!!! CGTTGATTCATTTATTTGAT+AGG + chr3.1:60247492-60247511 MS.gene30741:intron 25.0%
!!! CTTTTTTTAATTTTGTCTGG+TGG + chr3.1:60246561-60246580 MS.gene30741:intron 25.0%
!!! GAAACTGAAATTGATAATGT+TGG + chr3.1:60244982-60245001 MS.gene30741:CDS 25.0%
!!! TTTCGAGCACAATTTATTTT+TGG + chr3.1:60246514-60246533 MS.gene30741:intron 25.0%
AATGGCTTCTTAAGGTTATA+TGG - chr3.1:60247343-60247362 None:intergenic 30.0%
ACCAAAGCAAAATGAATCAT+AGG - chr3.1:60247538-60247557 None:intergenic 30.0%
AGAAGTTAATGAAGCCAAAT+TGG + chr3.1:60245440-60245459 MS.gene30741:CDS 30.0%
AGGATGATATTTCCATTAGT+GGG + chr3.1:60245901-60245920 MS.gene30741:CDS 30.0%
ATTATACTGTACACCAAACT+AGG + chr3.1:60245606-60245625 MS.gene30741:CDS 30.0%
CAATATTAAGATTGCATGGA+TGG - chr3.1:60247197-60247216 None:intergenic 30.0%
CAGAAGATCAATATTTGGAA+AGG + chr3.1:60246048-60246067 MS.gene30741:CDS 30.0%
CATCCATGCAATCTTAATAT+TGG + chr3.1:60247195-60247214 MS.gene30741:CDS 30.0%
CGCTCTTAAAAATCTTGTAA+AGG + chr3.1:60245308-60245327 MS.gene30741:CDS 30.0%
CTAGATGAAATGCATAGATA+TGG + chr3.1:60245075-60245094 MS.gene30741:CDS 30.0%
CTTAAAAACTTGGATGAATC+TGG + chr3.1:60245801-60245820 MS.gene30741:CDS 30.0%
GAACTTACAAAATGACTGAA+TGG - chr3.1:60247052-60247071 None:intergenic 30.0%
GAGTTCAAATATGTTATAGG+TGG + chr3.1:60247259-60247278 MS.gene30741:CDS 30.0%
GGAGAGTTCAAATATGTTAT+AGG + chr3.1:60247256-60247275 MS.gene30741:CDS 30.0%
GTTGATTATACAAGTTTGCA+TGG + chr3.1:60246931-60246950 MS.gene30741:CDS 30.0%
TAACATTGTGACATCACAAT+TGG - chr3.1:60246793-60246812 None:intergenic 30.0%
TACAAAAAGACTTAGGTTTG+TGG + chr3.1:60245665-60245684 MS.gene30741:CDS 30.0%
TATAACCTTAAGAAGCCATT+CGG + chr3.1:60247343-60247362 MS.gene30741:CDS 30.0%
TGCAAAAGATAAACGCTTAA+AGG + chr3.1:60247366-60247385 MS.gene30741:CDS 30.0%
TTAGTGGTAATAATACCCTT+TGG - chr3.1:60246823-60246842 None:intergenic 30.0%
TTATACTGTACACCAAACTA+GGG + chr3.1:60245607-60245626 MS.gene30741:CDS 30.0%
TTGTCTAATTGTCTTAGCTT+TGG + chr3.1:60246083-60246102 MS.gene30741:intron 30.0%
! AATTCTTCGTCAATTTTTCC+AGG - chr3.1:60247601-60247620 None:intergenic 30.0%
! ATTCATTTTGCTTTGGTATG+TGG + chr3.1:60247541-60247560 MS.gene30741:CDS 30.0%
! TCCATTTTGAATAGCTGAAA+GGG - chr3.1:60247296-60247315 None:intergenic 30.0%
! TGTCTAATTGTCTTAGCTTT+GGG + chr3.1:60246084-60246103 MS.gene30741:intron 30.0%
! TTCCATTTTGAATAGCTGAA+AGG - chr3.1:60247297-60247316 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+TGG + chr3.1:60247399-60247418 MS.gene30741:intron 30.0%
!! AATGTTGGTAAAGAGTATTC+TGG + chr3.1:60244997-60245016 MS.gene30741:CDS 30.0%
!! TCAGAGTTCTAAACTTCTAA+CGG - chr3.1:60247005-60247024 None:intergenic 30.0%
!!! AGGTTTACCAACTGTTTTTT+GGG + chr3.1:60246002-60246021 MS.gene30741:CDS 30.0%
AACAATATTGCTGAGTCAGT+TGG - chr3.1:60248085-60248104 None:intergenic 35.0%
AATTTGGACCCTGTATTTGA+TGG + chr3.1:60245192-60245211 MS.gene30741:CDS 35.0%
AATTTGTGGAATCACTTGTG+TGG - chr3.1:60246129-60246148 None:intergenic 35.0%
AGACATGAAATCCACAGATA+TGG + chr3.1:60245134-60245153 MS.gene30741:CDS 35.0%
AGCAAAATGAATCATAGGCT+CGG - chr3.1:60247533-60247552 None:intergenic 35.0%
ATATCATCCTCTCCAGAAAA+AGG - chr3.1:60245891-60245910 None:intergenic 35.0%
ATCAACATAGATGTATACCC+TGG + chr3.1:60245690-60245709 MS.gene30741:CDS 35.0%
ATCCTGATCTTCAATCTGAA+TGG - chr3.1:60244791-60244810 None:intergenic 35.0%
ATTGTGCTCGAAAGAATCTA+TGG - chr3.1:60246507-60246526 None:intergenic 35.0%
CAGTAAACTGGATGATACAT+CGG + chr3.1:60244858-60244877 MS.gene30741:CDS 35.0%
CAGTATAATCCTTCCTTTCA+TGG - chr3.1:60245595-60245614 None:intergenic 35.0%
CCAGTTTACTGTCAAACTTA+GGG - chr3.1:60244849-60244868 None:intergenic 35.0%
CTTGAGTGAGCTTAAAAACT+TGG + chr3.1:60245791-60245810 MS.gene30741:CDS 35.0%
GAAGTCATTTGATGTTGATG+TGG + chr3.1:60245515-60245534 MS.gene30741:CDS 35.0%
GACCCAATATTAAGATTGCA+TGG - chr3.1:60247201-60247220 None:intergenic 35.0%
GAGGATGATATTTCCATTAG+TGG + chr3.1:60245900-60245919 MS.gene30741:CDS 35.0%
GATTGAAGATCAGGATAAAG+AGG + chr3.1:60244795-60244814 MS.gene30741:CDS 35.0%
GCAAACTTGTATAATCAACG+CGG - chr3.1:60246930-60246949 None:intergenic 35.0%
GCTCCAAAGAGTTGAAATAT+TGG + chr3.1:60247117-60247136 MS.gene30741:CDS 35.0%
GGAAAACAAAACTGATCAGA+GGG + chr3.1:60245536-60245555 MS.gene30741:CDS 35.0%
GGATGATATTTCCATTAGTG+GGG + chr3.1:60245902-60245921 MS.gene30741:CDS 35.0%
GTGATAACAGATGACAATGA+TGG + chr3.1:60244883-60244902 MS.gene30741:CDS 35.0%
TCAATATTTGGAAAGGCTAG+AGG + chr3.1:60246055-60246074 MS.gene30741:CDS 35.0%
TCCAGTTTACTGTCAAACTT+AGG - chr3.1:60244850-60244869 None:intergenic 35.0%
TCCCTTTCAGCTATTCAAAA+TGG + chr3.1:60247292-60247311 MS.gene30741:CDS 35.0%
TCTCAGAATGTTGTTCATGA+TGG + chr3.1:60244823-60244842 MS.gene30741:CDS 35.0%
TGAAATGCATAGATATGGAC+TGG + chr3.1:60245080-60245099 MS.gene30741:CDS 35.0%
TGGAAAACAAAACTGATCAG+AGG + chr3.1:60245535-60245554 MS.gene30741:CDS 35.0%
TGTAACCTTCAATTCAGAAG+AGG - chr3.1:60248119-60248138 None:intergenic 35.0%
TTAATATTGGGTCATCCAGA+TGG + chr3.1:60247208-60247227 MS.gene30741:CDS 35.0%
TTGTGCTCGAAAGAATCTAT+GGG - chr3.1:60246506-60246525 None:intergenic 35.0%
! AACTGACTCAGCAATATTGT+TGG + chr3.1:60248084-60248103 MS.gene30741:CDS 35.0%
! GCCTATGATTCATTTTGCTT+TGG + chr3.1:60247534-60247553 MS.gene30741:CDS 35.0%
! TAACAGATGACAATGATGGA+AGG + chr3.1:60244887-60244906 MS.gene30741:CDS 35.0%
! TACATATCAGCCTTATGACT+GGG + chr3.1:60248135-60248154 MS.gene30741:CDS 35.0%
! TTAATTTTGTCTGGTGGTAC+AGG + chr3.1:60246567-60246586 MS.gene30741:intron 35.0%
! TTACATATCAGCCTTATGAC+TGG + chr3.1:60248134-60248153 MS.gene30741:CDS 35.0%
! TTCAATGTCACTGGAGATTT+TGG + chr3.1:60244940-60244959 MS.gene30741:CDS 35.0%
!! CAATCATGTGTATCGCTTTT+TGG + chr3.1:60246759-60246778 MS.gene30741:CDS 35.0%
!! TAGATATGGACTGGATGATT+TGG + chr3.1:60245089-60245108 MS.gene30741:CDS 35.0%
!!! CAGGTTTACCAACTGTTTTT+TGG + chr3.1:60246001-60246020 MS.gene30741:CDS 35.0%
!!! CTTCATCACTTTTTCCAGAA+AGG - chr3.1:60245371-60245390 None:intergenic 35.0%
AAAAAGTGATGAAGCTGCTG+TGG + chr3.1:60245377-60245396 MS.gene30741:CDS 40.0%
AAAAGTGATGAAGCTGCTGT+GGG + chr3.1:60245378-60245397 MS.gene30741:CDS 40.0%
ACAGATTGTACAAAATGCGC+AGG + chr3.1:60245982-60246001 MS.gene30741:CDS 40.0%
ACATCTACCCGTAAATTGGA+TGG + chr3.1:60245249-60245268 MS.gene30741:CDS 40.0%
AGATTCTTGACACCCTAGTT+TGG - chr3.1:60245622-60245641 None:intergenic 40.0%
ATCCACAGATATGGATCAGA+AGG + chr3.1:60245143-60245162 MS.gene30741:CDS 40.0%
ATCCTTCCTTTCATGGCTAT+TGG - chr3.1:60245588-60245607 None:intergenic 40.0%
CAAAATGAATCATAGGCTCG+GGG - chr3.1:60247531-60247550 None:intergenic 40.0%
CAGAGGGATTCAGTAACAAA+TGG + chr3.1:60245552-60245571 MS.gene30741:CDS 40.0%
CCCTAAGTTTGACAGTAAAC+TGG + chr3.1:60244846-60244865 MS.gene30741:CDS 40.0%
CCTGATCTCCATCCAATTTA+CGG - chr3.1:60245260-60245279 None:intergenic 40.0%
CTATCGCAGAAATTGCATCA+AGG + chr3.1:60246851-60246870 MS.gene30741:CDS 40.0%
CTGATCTCCATCCAATTTAC+GGG - chr3.1:60245259-60245278 None:intergenic 40.0%
CTTGATGCAATTTCTGCGAT+AGG - chr3.1:60246853-60246872 None:intergenic 40.0%
GAAGCCTATGCTATTGAAGA+TGG + chr3.1:60246901-60246920 MS.gene30741:CDS 40.0%
GCAAAATGAATCATAGGCTC+GGG - chr3.1:60247532-60247551 None:intergenic 40.0%
GCATCCATCTTCAATAGCAT+AGG - chr3.1:60246908-60246927 None:intergenic 40.0%
GGCTTCTTAAGGTTATATGG+AGG - chr3.1:60247340-60247359 None:intergenic 40.0%
TAAGGTTATATGGAGGTCGT+TGG - chr3.1:60247333-60247352 None:intergenic 40.0%
TACAAGTTTGCATGGAAGTG+AGG + chr3.1:60246939-60246958 MS.gene30741:CDS 40.0%
TAGTTCAAACCCCAGTCATA+AGG - chr3.1:60248148-60248167 None:intergenic 40.0%
TCATCACCAATAGCCATGAA+AGG + chr3.1:60245579-60245598 MS.gene30741:CDS 40.0%
TCCAAATTGTTGTCCTCACT+TGG - chr3.1:60245180-60245199 None:intergenic 40.0%
TCCAAGTGAGGACAACAATT+TGG + chr3.1:60245176-60245195 MS.gene30741:CDS 40.0%
TGCCATTCAGATTGAAGATC+AGG + chr3.1:60244786-60244805 MS.gene30741:CDS 40.0%
TGGCTTCTCAGAAACCAATT+TGG - chr3.1:60245457-60245476 None:intergenic 40.0%
TGTATACCCTGGTAGAAAGA+CGG + chr3.1:60245701-60245720 MS.gene30741:CDS 40.0%
TTGAATAGCTGAAAGGGAGT+AGG - chr3.1:60247290-60247309 None:intergenic 40.0%
! ACATATCAGCCTTATGACTG+GGG + chr3.1:60248136-60248155 MS.gene30741:CDS 40.0%
! AGAGTATTCTGGTGGTGATA+AGG + chr3.1:60245008-60245027 MS.gene30741:CDS 40.0%
! CGTTTATCTTTTGCACCGAA+TGG - chr3.1:60247361-60247380 None:intergenic 40.0%
! GGAGGCCAACATAAATTTTG+AGG + chr3.1:60245032-60245051 MS.gene30741:CDS 40.0%
! TCAGCATTTGTTGGAGACAA+AGG + chr3.1:60244720-60244739 MS.gene30741:CDS 40.0%
! TGTAAAGGAGAAAAGTGCAG+TGG + chr3.1:60245323-60245342 MS.gene30741:CDS 40.0%
!! AGGTCTCGTGATTGATTTGA+CGG + chr3.1:60247654-60247673 MS.gene30741:CDS 40.0%
!! GGTGATGGGGTTTCAAATAA+CGG - chr3.1:60245867-60245886 None:intergenic 40.0%
!! GTTGGTAAAGAGTATTCTGG+TGG + chr3.1:60245000-60245019 MS.gene30741:CDS 40.0%
!! TTCATGGCTATTGGTGATGA+TGG - chr3.1:60245579-60245598 None:intergenic 40.0%
!!! CATCACTTTTTCCAGAAAGG+CGG - chr3.1:60245368-60245387 None:intergenic 40.0%
!!! GTGGGTGATTTTGATGATGA+AGG + chr3.1:60245396-60245415 MS.gene30741:CDS 40.0%
AAAGGAAGCAAGTTCCCAAG+CGG + chr3.1:60244738-60244757 MS.gene30741:CDS 45.0%
AATAGCTGAAAGGGAGTAGG+TGG - chr3.1:60247287-60247306 None:intergenic 45.0%
ACCTCGGTTCCATCAAATAC+AGG - chr3.1:60245204-60245223 None:intergenic 45.0%
ACGGAGTTGGAGAAGATATC+TGG + chr3.1:60245720-60245739 MS.gene30741:CDS 45.0%
ACTCGCAATTTCCTGAGAAG+TGG + chr3.1:60247631-60247650 MS.gene30741:CDS 45.0%
AGGTTGCTTACTCGTTGTGT+TGG - chr3.1:60247769-60247788 None:intergenic 45.0%
ATAGGCTTCGAACATTGCAG+AGG - chr3.1:60246890-60246909 None:intergenic 45.0%
ATTTACGGGTAGATGTGCTC+CGG - chr3.1:60245245-60245264 None:intergenic 45.0%
ATTTGATGGAACCGAGGTTC+CGG + chr3.1:60245206-60245225 MS.gene30741:CDS 45.0%
CACCAATAGCCATGAAAGGA+AGG + chr3.1:60245583-60245602 MS.gene30741:CDS 45.0%
CCGTAAATTGGATGGAGATC+AGG + chr3.1:60245257-60245276 MS.gene30741:CDS 45.0%
CCTCGGTTCCATCAAATACA+GGG - chr3.1:60245203-60245222 None:intergenic 45.0%
CTCCAGAAAAAGGTGGTGAT+GGG - chr3.1:60245881-60245900 None:intergenic 45.0%
CTTCTTTCCAATGCTCCATC+TGG - chr3.1:60247226-60247245 None:intergenic 45.0%
GAGCACATCTACCCGTAAAT+TGG + chr3.1:60245245-60245264 MS.gene30741:CDS 45.0%
GCAATTTCTGCGATAGGCTT+TGG - chr3.1:60246847-60246866 None:intergenic 45.0%
GCTTGCCTCTTCTGAATTGA+AGG + chr3.1:60248111-60248130 MS.gene30741:CDS 45.0%
GGCAGATGAAATTCCAAGTG+AGG + chr3.1:60245164-60245183 MS.gene30741:CDS 45.0%
GTCTGAGCCCAAAAAACAGT+TGG - chr3.1:60246012-60246031 None:intergenic 45.0%
TCAATTCAGAAGAGGCAAGC+AGG - chr3.1:60248111-60248130 None:intergenic 45.0%
TCATCCTCTCCAGAAAAAGG+TGG - chr3.1:60245888-60245907 None:intergenic 45.0%
TCTCCAGAAAAAGGTGGTGA+TGG - chr3.1:60245882-60245901 None:intergenic 45.0%
TGCATCAAGGCTGAGATTTC+TGG + chr3.1:60246864-60246883 MS.gene30741:CDS 45.0%
TGCCTTCTGATCCATATCTG+TGG - chr3.1:60245148-60245167 None:intergenic 45.0%
TTCATCAACTGCCCCACTAA+TGG - chr3.1:60245916-60245935 None:intergenic 45.0%
TTCCAAGCAGATTTCTCCAC+TGG - chr3.1:60245477-60245496 None:intergenic 45.0%
TTGCACCGAATGGCTTCTTA+AGG - chr3.1:60247351-60247370 None:intergenic 45.0%
TTGCATGGAAGTGAGGAGTT+CGG + chr3.1:60246946-60246965 MS.gene30741:CDS 45.0%
TTGGCTAAAGCAGAGAACGA+CGG + chr3.1:60245108-60245127 MS.gene30741:CDS 45.0%
! ATTGGTTTCTGAGAAGCCAG+TGG + chr3.1:60245458-60245477 MS.gene30741:CDS 45.0%
! GTATTCTGGTGGTGATAAGG+TGG + chr3.1:60245011-60245030 MS.gene30741:CDS 45.0%
! TCCAGAAAAAGGTGGTGATG+GGG - chr3.1:60245880-60245899 None:intergenic 45.0%
! TCCAGGAGAATAGCATCGAA+GGG - chr3.1:60247584-60247603 None:intergenic 45.0%
! TTCCAGGAGAATAGCATCGA+AGG - chr3.1:60247585-60247604 None:intergenic 45.0%
! TTTTGGCAAAAGCGAGCTTG+AGG + chr3.1:60248030-60248049 MS.gene30741:CDS 45.0%
!! ATCACCACCTTTTTCTGGAG+AGG + chr3.1:60245881-60245900 MS.gene30741:CDS 45.0%
!! CAGATGGAGCATTGGAAAGA+AGG + chr3.1:60247224-60247243 MS.gene30741:CDS 45.0%
!! TAGTGGGGCAGTTGATGAAT+TGG + chr3.1:60245917-60245936 MS.gene30741:CDS 45.0%
!! TGCGATAGGCTTTGGATTAG+TGG - chr3.1:60246839-60246858 None:intergenic 45.0%
AGCCAGTGGAGAAATCTGCT+TGG + chr3.1:60245472-60245491 MS.gene30741:CDS 50.0%
CCAACTCCGTCTTTCTACCA+GGG - chr3.1:60245710-60245729 None:intergenic 50.0%
CCCTGTATTTGATGGAACCG+AGG + chr3.1:60245200-60245219 MS.gene30741:CDS 50.0%
CGCAATTTCCTGAGAAGTGG+AGG + chr3.1:60247634-60247653 MS.gene30741:CDS 50.0%
GAATCATAGGCTCGGGGTAA+GGG - chr3.1:60247525-60247544 None:intergenic 50.0%
TCCAACTCCGTCTTTCTACC+AGG - chr3.1:60245711-60245730 None:intergenic 50.0%
TGAATCATAGGCTCGGGGTA+AGG - chr3.1:60247526-60247545 None:intergenic 50.0%
TTCCGGGGATGGAAGTTAAC+CGG + chr3.1:60245223-60245242 MS.gene30741:CDS 50.0%
TTGCAGCTTCTCAACCGCTT+GGG - chr3.1:60244755-60244774 None:intergenic 50.0%
TTTGATGGAACCGAGGTTCC+GGG + chr3.1:60245207-60245226 MS.gene30741:CDS 50.0%
! ACCCCATCACCACCTTTTTC+TGG + chr3.1:60245876-60245895 MS.gene30741:CDS 50.0%
! TTCTGGTGGTGATAAGGTGG+AGG + chr3.1:60245014-60245033 MS.gene30741:CDS 50.0%
AACTTCCATCCCCGGAACCT+CGG - chr3.1:60245220-60245239 None:intergenic 55.0%
ACTGCCTTCTCAACCACACC+TGG - chr3.1:60245288-60245307 None:intergenic 55.0%
AGATCAGGACAGTCCAGGTG+TGG + chr3.1:60245272-60245291 MS.gene30741:CDS 55.0%
ATGGAAGTGAGGAGTTCGGC+AGG + chr3.1:60246950-60246969 MS.gene30741:CDS 55.0%
CAGTCCAGGTGTGGTTGAGA+AGG + chr3.1:60245281-60245300 MS.gene30741:CDS 55.0%
CCCTGGTAGAAAGACGGAGT+TGG + chr3.1:60245707-60245726 MS.gene30741:CDS 55.0%
CTCCGGTTAACTTCCATCCC+CGG - chr3.1:60245228-60245247 None:intergenic 55.0%
CTTGCAGCTTCTCAACCGCT+TGG - chr3.1:60244756-60244775 None:intergenic 55.0%
GATGGAGATCAGGACAGTCC+AGG + chr3.1:60245267-60245286 MS.gene30741:CDS 55.0%
GCCCTTCGATGCTATTCTCC+TGG + chr3.1:60247580-60247599 MS.gene30741:CDS 55.0%
GGGTCATCCAGATGGAGCAT+TGG + chr3.1:60247216-60247235 MS.gene30741:CDS 55.0%
TCACGAGACCTCCACTTCTC+AGG - chr3.1:60247645-60247664 None:intergenic 55.0%
TGGTATGTGGCACCCGATCT+GGG + chr3.1:60247554-60247573 MS.gene30741:CDS 55.0%
TTGATGGAACCGAGGTTCCG+GGG + chr3.1:60245208-60245227 MS.gene30741:CDS 55.0%
TTGGTATGTGGCACCCGATC+TGG + chr3.1:60247553-60247572 MS.gene30741:CDS 55.0%
! GGAGAATAGCATCGAAGGGC+AGG - chr3.1:60247580-60247599 None:intergenic 55.0%
ACTATGCTGCGCCGCCTTTC+TGG + chr3.1:60245354-60245373 MS.gene30741:CDS 60.0%
AGAAAGGCGGCGCAGCATAG+TGG - chr3.1:60245355-60245374 None:intergenic 60.0%
ATCGAAGGGCAGGCCCAGAT+CGG - chr3.1:60247570-60247589 None:intergenic 60.0%
TCGAAGGGCAGGCCCAGATC+GGG - chr3.1:60247569-60247588 None:intergenic 65.0%
TGGAACCGAGGTTCCGGGGA+TGG + chr3.1:60245212-60245231 MS.gene30741:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 60244712 60248171 60244712 ID=MS.gene30741
chr3.1 mRNA 60244712 60248171 60244712 ID=MS.gene30741.t1;Parent=MS.gene30741
chr3.1 exon 60244712 60246076 60244712 ID=MS.gene30741.t1.exon1;Parent=MS.gene30741.t1
chr3.1 CDS 60244712 60246076 60244712 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
chr3.1 exon 60246589 60246644 60246589 ID=MS.gene30741.t1.exon2;Parent=MS.gene30741.t1
chr3.1 CDS 60246589 60246644 60246589 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
chr3.1 exon 60246738 60246971 60246738 ID=MS.gene30741.t1.exon3;Parent=MS.gene30741.t1
chr3.1 CDS 60246738 60246971 60246738 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
chr3.1 exon 60247096 60247387 60247096 ID=MS.gene30741.t1.exon4;Parent=MS.gene30741.t1
chr3.1 CDS 60247096 60247387 60247096 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
chr3.1 exon 60247514 60247710 60247514 ID=MS.gene30741.t1.exon5;Parent=MS.gene30741.t1
chr3.1 CDS 60247514 60247710 60247514 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
chr3.1 exon 60248018 60248171 60248018 ID=MS.gene30741.t1.exon6;Parent=MS.gene30741.t1
chr3.1 CDS 60248018 60248171 60248018 ID=cds.MS.gene30741.t1;Parent=MS.gene30741.t1
Gene Sequence

>MS.gene30741

ATGGAAGATCAGCATTTGTTGGAGACAAAGGAAGCAAGTTCCCAAGCGGTTGAGAAGCTGCAAGTAGATGCTTCTGCCATTCAGATTGAAGATCAGGATAAAGAGGCAAAATCTCAGAATGTTGTTCATGATGGCCCTAAGTTTGACAGTAAACTGGATGATACATCGGACGTGATAACAGATGACAATGATGGAAGGTCTAAGTCTGATACTGATGAAGAAAAAAAATTCAATGTCACTGGAGATTTTGGTTTAGCTCCGATCAATTCTGAAACTGAAATTGATAATGTTGGTAAAGAGTATTCTGGTGGTGATAAGGTGGAGGCCAACATAAATTTTGAGGCTAAAAGTGAAGAGACAAATCTAGATGAAATGCATAGATATGGACTGGATGATTTGGCTAAAGCAGAGAACGACGGTAGAGACATGAAATCCACAGATATGGATCAGAAGGCAGATGAAATTCCAAGTGAGGACAACAATTTGGACCCTGTATTTGATGGAACCGAGGTTCCGGGGATGGAAGTTAACCGGAGCACATCTACCCGTAAATTGGATGGAGATCAGGACAGTCCAGGTGTGGTTGAGAAGGCAGTCGCTCTTAAAAATCTTGTAAAGGAGAAAAGTGCAGTGGCAGTCTCCACTATGCTGCGCCGCCTTTCTGGAAAAAGTGATGAAGCTGCTGTGGGTGATTTTGATGATGAAGGCAAGAATGTTTCAGATGTCTCAGAAGTTAATGAAGCCAAATTGGTTTCTGAGAAGCCAGTGGAGAAATCTGCTTGGAATCCCTTAAATTATATTAAGAAGTCATTTGATGTTGATGTGGAAAACAAAACTGATCAGAGGGATTCAGTAACAAATGGTCCATCATCACCAATAGCCATGAAAGGAAGGATTATACTGTACACCAAACTAGGGTGTCAAGAATCTAGAATATTTAGGCTATTTTTACGTACAAAAAGACTTAGGTTTGTGGAAATCAACATAGATGTATACCCTGGTAGAAAGACGGAGTTGGAGAAGATATCTGGATCTACTTCTGTTCCCAAGTTGTTTTTCAATGAAATATGTATTGGAGGCTTGAGTGAGCTTAAAAACTTGGATGAATCTGGAAAGCTTGATGAGAAGATTGACTTTCTTATTACTGAAGCACCGTTATTTGAAACCCCATCACCACCTTTTTCTGGAGAGGATGATATTTCCATTAGTGGGGCAGTTGATGAATTGGCTCTTGTTGTACACAAAATGAAAGAATCTATTACTGTGAAAGACAGATTGTACAAAATGCGCAGGTTTACCAACTGTTTTTTGGGCTCAGACGCTTTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGCTAGAGGTAAGCTTGTCTAATTGTCTTAGCTTTGGGTCTAATGTGTCAATAAACACCACACAAGTGATTCCACAAATTCATACGTAATCAAACAAATCATACACTAAATATCACATATATTTACTTACATACAGTTTCATGATCAAACAAATCATACGCTAAATTTCTCATAGATTCAGAAGATAATATATAATGTATTACATAAAATGAGGTCTAACTATACTTTGAATGACATAATCAAACAAATCATATCACACTTATCACATAGATTCTTTCAAATACAATTTGTAGGTCTTATCAAAACAATCAAAAAAATTATACCCTAAATATCCCATAGATTTAAAAGATCATATATAATAGTGTATTGCATAGAACTCTATTTTGTTATGATTTGAATAACACAATCAAACAAACAAATCATACACTAAATATCCCATAGATTCTTTCGAGCACAATTTATTTTTGGCTTCACAAAGCCATTGTTTTTCTTCTTTTTTTAATTTTGTCTGGTGGTACAGGCTGTTGAATTTGCTCGAAAGCTTGCTGACAAATTTTTCTTTCGACATGTTCTTGAGTGAGTCTATATACTTAGAGTTCTGATTTTTAATGTTTAATTTGTTTTGTTGTTACAAAGTAACAATATTTACTAATTTTTGTTTTGATTCAGTGAAAATTTATTTGAAGATGGCAATCATGTGTATCGCTTTTTGGATGATGATCCAATTGTGATGTCACAATGTTACAATATTCCAAAGGGTATTATTACCACTAATCCAAAGCCTATCGCAGAAATTGCATCAAGGCTGAGATTTCTGGCCTCTGCAATGTTCGAAGCCTATGCTATTGAAGATGGATGCCGCGTTGATTATACAAGTTTGCATGGAAGTGAGGAGTTCGGCAGGTGTCTTCATTATTCTTTGTATTTTGTTTTCCGTTAGAAGTTTAGAACTCTGACGTTTTATTACAATCTTTGATAGTCCATTCAGTCATTTTGTAAGTTCACATGCTATTTGTTGACATTGTAGATATCTGAGAATAGTTGAAGAGCTCCAAAGAGTTGAAATATTGGATTTGTCTAGAGAAGAAAAGCTTGCTTTCTTTATTAATCTTTATAACATGATGACCATCCATGCAATCTTAATATTGGGTCATCCAGATGGAGCATTGGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATAGGTGGTTCCACCTACTCCCTTTCAGCTATTCAAAATGGAATATTGAGGGGAAACCAACGACCTCCATATAACCTTAAGAAGCCATTCGGTGCAAAAGATAAACGCTTAAAGGTAAGCTACTTTTGTTGTTGTTGTTGTTGTTTGGCACAATCACTTTCATGTTTAAATTAATTATTTTAGAATCACATGTAGACTTTCATCAGTTTTGATGCTCACGTTGATTCATTTATTTGATAGGTTGCACTCCCTTACCCCGAGCCTATGATTCATTTTGCTTTGGTATGTGGCACCCGATCTGGGCCTGCCCTTCGATGCTATTCTCCTGGAAAAATTGACGAAGAATTATTGGATGCAACTCGCAATTTCCTGAGAAGTGGAGGTCTCGTGATTGATTTGACGGCAAAGACTGCATATGTCAGTAAGATTCTTAAATGGTAAGTTCTTTTAAACAAAGAAAACAACTCCTTAATATCTTATACACTATTTTATCCAACACAACGAGTAAGCAACCTTTTAAAATTCCATACTTAATTGAATGTTTCAAATTTAAAGTACTGAAGATTTTAATGTGATATGTAAAATTTGTAGAAATGTCATTGAAAATTTCGTTTTGATATTTAATGTGATATGTAAAACTTAAACATGAACAATATTGTTGTTAAATGAAAGCAGTGTTAGAAATTGTGTTTACTTTGGTGATGTTGAAACTGAAAATAACTATTCCTCATTGTTCATATTTAGGTATAGCATAGATTTTGGCAAAAGCGAGCTTGAGGTGATCAAGCATGTGTCAAACTATTTAGATCCAACTGACTCAGCAATATTGTTGGACCTGCTTGCCTCTTCTGAATTGAAGGTTACATATCAGCCTTATGACTGGGGTTTGAACTACTAG
Protein sequence

>MS.gene30741.t1

MEDQHLLETKEASSQAVEKLQVDASAIQIEDQDKEAKSQNVVHDGPKFDSKLDDTSDVITDDNDGRSKSDTDEEKKFNVTGDFGLAPINSETEIDNVGKEYSGGDKVEANINFEAKSEETNLDEMHRYGLDDLAKAENDGRDMKSTDMDQKADEIPSEDNNLDPVFDGTEVPGMEVNRSTSTRKLDGDQDSPGVVEKAVALKNLVKEKSAVAVSTMLRRLSGKSDEAAVGDFDDEGKNVSDVSEVNEAKLVSEKPVEKSAWNPLNYIKKSFDVDVENKTDQRDSVTNGPSSPIAMKGRIILYTKLGCQESRIFRLFLRTKRLRFVEINIDVYPGRKTELEKISGSTSVPKLFFNEICIGGLSELKNLDESGKLDEKIDFLITEAPLFETPSPPFSGEDDISISGAVDELALVVHKMKESITVKDRLYKMRRFTNCFLGSDALDFLSEDQYLERLEAVEFARKLADKFFFRHVLDENLFEDGNHVYRFLDDDPIVMSQCYNIPKGIITTNPKPIAEIASRLRFLASAMFEAYAIEDGCRVDYTSLHGSEEFGRYLRIVEELQRVEILDLSREEKLAFFINLYNMMTIHAILILGHPDGALERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDKRLKVALPYPEPMIHFALVCGTRSGPALRCYSPGKIDEELLDATRNFLRSGGLVIDLTAKTAYVSKILKWYSIDFGKSELEVIKHVSNYLDPTDSAILLDLLASSELKVTYQPYDWGLNY