AlfalfaGEDB | MS.gene30789

M. sativa cultivar XinJiangDaYe / MS.gene30789

KEGG: K16296
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0016787 GO:0016825 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00450.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30789.t1	KEH18097.1	54.6	284	7	1	9	170	97	380	1.40E-72	282.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30789.t1	Q8L7B2	52.7	131	60	1	34	164	248	376	1.0e-34	148.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30789.t1	A0A072TKY7	54.6	284	7	1	9	170	97	380	1.0e-72	282.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050026	MS.gene30789	0.813609	2.35E-51	-1.69E-46
MS.gene05415	MS.gene30789	0.800016	1.76E-48	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30789.t1	MTR_8g011350	88.079	151	11	1	34	177	244	394	8.81e-93	280
MS.gene30789.t1	MTR_8g011350	88.079	151	11	1	34	177	244	394	1.32e-92	280
MS.gene30789.t1	MTR_7g051430	54.412	136	59	3	36	169	245	379	8.64e-44	151
MS.gene30789.t1	MTR_7g051430	54.412	136	59	3	36	169	245	379	4.83e-43	151
MS.gene30789.t1	MTR_7g080180	45.912	159	78	3	34	186	245	401	1.42e-40	144
MS.gene30789.t1	MTR_7g080180	46.497	157	76	3	36	186	247	401	2.47e-40	144

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30789.t1	AT4G12910	53.488	129	58	1	36	164	250	376	1.25e-42	149
MS.gene30789.t1	AT4G12910	53.488	129	58	1	36	164	250	376	1.70e-42	150
MS.gene30789.t1	AT3G25420	48.889	135	63	2	34	164	241	373	5.06e-38	137

Showing 1 to 3 of 3 entries

Previous1Next

Find 50 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGTTCGGTCGTGCT+TGG	0.503362	3.1:-59546163	MS.gene30789:CDS
AAAGCATTAAAAGCCAAAGT+TGG	0.538383	3.1:-59545525	MS.gene30789:CDS
AAGAGATGGTAGACATTCAT+CGG	0.557042	3.1:-59545192	MS.gene30789:CDS
ACAAATTTAGAAACAAGAGA+TGG	0.638643	3.1:-59545206	MS.gene30789:intron
ACCATGCTACCACGGCACAG+AGG	0.736692	3.1:-59546270	MS.gene30789:CDS
ACTAGACGGTAACCTAATAT+AGG	0.445194	3.1:+59546229	None:intergenic
ACTTTGCCTTTCAACCAATT+TGG	0.281351	3.1:+59545473	None:intergenic
AGAAATTCCCATCACACTCG+CGG	0.644090	3.1:+59546457	None:intergenic
AGATTAACCGCGAGTGTGAT+GGG	0.518035	3.1:-59546464	MS.gene30789:CDS
AGATTATCACATCCTATATT+AGG	0.278941	3.1:-59546241	MS.gene30789:CDS

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACACAATATTGAAACTGAAG+AGG	+	chr3.1:59547088-59547107	None:intergenic	30.0%
ATTTATTTAGCCCTTCCTAT+AGG	-	chr3.1:59546784-59546803	MS.gene30789:intron	30.0%
CACAATATTGAAACTGAAGA+GGG	+	chr3.1:59547087-59547106	None:intergenic	30.0%
CATAAACGTCTATCATGTAA+GGG	+	chr3.1:59545521-59545540	None:intergenic	30.0%
CATGACCTAACAATATCTTT+AGG	-	chr3.1:59546447-59546466	MS.gene30789:CDS	30.0%
GATGATTTCTTCTCATAGTT+TGG	-	chr3.1:59545306-59545325	MS.gene30789:intron	30.0%
GTTACAGATGAACAAATTGA+TGG	-	chr3.1:59545706-59545725	MS.gene30789:intron	30.0%
TATCTCAGATGAATTGTTTG+AGG	-	chr3.1:59545765-59545784	MS.gene30789:intron	30.0%
TGAATTACACAACTCTTGTT+TGG	+	chr3.1:59545571-59545590	None:intergenic	30.0%
TGCACAATAACTATCTTTGA+AGG	+	chr3.1:59546750-59546769	None:intergenic	30.0%

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	59545163	59547223	59545163	ID=MS.gene30789
chr3.1	mRNA	59545163	59547223	59545163	ID=MS.gene30789.t1;Parent=MS.gene30789
chr3.1	exon	59547122	59547223	59547122	ID=MS.gene30789.t1.exon1;Parent=MS.gene30789.t1
chr3.1	CDS	59547122	59547223	59547122	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1
chr3.1	exon	59546407	59546487	59546407	ID=MS.gene30789.t1.exon2;Parent=MS.gene30789.t1
chr3.1	CDS	59546407	59546487	59546407	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1
chr3.1	exon	59546085	59546327	59546085	ID=MS.gene30789.t1.exon3;Parent=MS.gene30789.t1
chr3.1	CDS	59546085	59546327	59546085	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1
chr3.1	exon	59545852	59545917	59545852	ID=MS.gene30789.t1.exon4;Parent=MS.gene30789.t1
chr3.1	CDS	59545852	59545917	59545852	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1
chr3.1	exon	59545469	59545580	59545469	ID=MS.gene30789.t1.exon5;Parent=MS.gene30789.t1
chr3.1	CDS	59545469	59545580	59545469	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1
chr3.1	exon	59545163	59545218	59545163	ID=MS.gene30789.t1.exon6;Parent=MS.gene30789.t1
chr3.1	CDS	59545163	59545218	59545163	ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1

Gene Sequence

>MS.gene30789

ATGTGGCAATTGATGATTTCTTCAGGTCCTTTCAATTTTGAAGCAGCAAAGACAAAGGGAAGCCTGCCAACTCTGCACCTCAATCCATATAGCTGGACCAAGGTATGAATTTTTTAAAAATCAGTTGAATTTTGAAAGGGAAGGATGATTTCTTCTCATAGTTTGGTTTTGGGTAGAGACTCTATAGGGTTGTTTGTATTGACTTATTTAAATTTATGTATAATAAGCACCTGTGAGACTGTTTGAGAGCTTTTGAAAAGAATGAGCTCTTCATGATAGCTTATGAATGCAGCTTAGAACTTATATGTAAACTGTTTGACCTTATCTTATGTTATAGAAATAACTTATATGTAAGCCCTTACATGATAGACGTTTATGCTATAAGTAAGTAGTTAAGTTGTTTATCCAAACAAGAGTTGTGTAATTCAACAATCACTAGTTATTTTTTCTTGTTATCAAATGATATATGATTCTGATTTTGCATTACAGATTTCCAGTATTATATATTTAGACTCTCCTGCTGGTTACATAGTTGGAAATGGTGTTACAGATGAACAAATTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGTCTTATCTCAGATGAATTGTTTGAGGCGAAAATATACCATTTTAAGAGCAAGTTTGGAACTATATCTATTGTTTGAAACCTTGCTATATATTGTCTTGTAAGTATGTTTCTTTAAGTCATGTTGCACTCTGTTGCAGGAGATTAACCGCGAGTGTGATGGGAATTTCTATAATTCACTCAGTGATAATTGTACAAACAAGCTTGCAAAAATTGATGAGGTGATTTAATTATACTATAGTACTGAGATTATAAGAAATAAGTGAATTTGGCACTCATTGATGATTCTTATTATTTTAGGACATTGATGGGTTGAATGTATATAACATTCTAGAACCATGCTACCACGGCACAGAGGCAGATAAGATTATCACATCCTATATTAGGTTACCGTCTAGTTTCCGTGAGTTAGGTGAGACTGAAAAACCTCATCCTGTGAGGAAAAGAATGTTCGGTCGTGCTTGGCCCCTTAGAGCACCTGTGAGAGATGGCAACGTACCAACTTGGCCACAACTTATCAATAGCAACAATGTTCCATGCACAGTATGTTTCTTTACTACTATCTAAGTGTCTATATTTACCATTTAATATCTCCTTATTAGCTACTAGTTGATTTAATTGCTCGATTATCATTGCATACTTGTTTAAACCTTAGAAATGCTAATTTTTTATTGCCAAAAACAAGTAACATGACCTAACAATATCTTTAGGATGGCTCTGTTGCAAATGCATGGTTGAACAATGAAGAAGTCAGGAAAGCAATTCACACTGCAGAGGTGAGGTTTCTTGTAAGATACCTCTATACTTTGAATGTCAAAACACTAAATTATTATCTCTCTGATGAAACAGAAAAGTGTGGTCAGTAGTTGGGATTTATGCACAGACAAAATTTCCTTCGATGTATATTTAGTATAAAATACCAATCATGATGGGAATGATGTCTTAGAGAGATATGAGATGTTTGACTATGATTTGTGTGCTTTTTCTTCCTTCAAAGATAGTTATTGTGCAAAACCTATTGTTTGATTTATTTAGCCCTTCCTATAGGCCAATTCTGCTAAATCAATTGAAAAGGATCATAAAGCATTAAAAGCCAAAGTTGGTGATGAAGTGATGGTGAAGTCACTTGAGGCCAAATTGGTTGAAAGGCAAAGTAAAGGTAGGTTCTTGTGCAATATTGTTATACCTTGTCTAAAAGAAAATCTATTTTCTGACTGAAGTAGAACACATGCCATGTTATTTTTCGATTTATATGAAAAATCTTCAATGCTATATAGCATTGTTCTTTGGACATGTATATTAGATTGTATATGTATGTTTGTTTTCCCTCTTCAGTTTCAATATTGTGTTTCAATTTACTAATCATTGTCTTATTTATTTTTCTTCTTCTTTTCGGCCAACAAATTTAGAAACAAGAGATGGTAGACATTCATCGGAGTCTAGCTACCGCCTCGAGGATCATTGA

Protein sequence

>MS.gene30789.t1

MWQLMISSGPFNFEAAKTKGSLPTLHLNPYSWTKEINRECDGNFYNSLSDNCTNKLAKIDEDIDGLNVYNILEPCYHGTEADKIITSYIRLPSSFRELGETEKPHPVRKRMFGRAWPLRAPVRDGNVPTWPQLINSNNVPCTDGSVANAWLNNEEVRKAIHTAEANSAKSIEKDHKALKAKVGDEVMVKSLEAKLVERQSKETRDGRHSSESSYRLEDH