Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30789.t1 | KEH18097.1 | 54.6 | 284 | 7 | 1 | 9 | 170 | 97 | 380 | 1.40E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30789.t1 | Q8L7B2 | 52.7 | 131 | 60 | 1 | 34 | 164 | 248 | 376 | 1.0e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30789.t1 | A0A072TKY7 | 54.6 | 284 | 7 | 1 | 9 | 170 | 97 | 380 | 1.0e-72 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene30789 | 0.813609 | 2.35E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene30789 | 0.800016 | 1.76E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30789.t1 | MTR_8g011350 | 88.079 | 151 | 11 | 1 | 34 | 177 | 244 | 394 | 8.81e-93 | 280 |
| MS.gene30789.t1 | MTR_8g011350 | 88.079 | 151 | 11 | 1 | 34 | 177 | 244 | 394 | 1.32e-92 | 280 |
| MS.gene30789.t1 | MTR_7g051430 | 54.412 | 136 | 59 | 3 | 36 | 169 | 245 | 379 | 8.64e-44 | 151 |
| MS.gene30789.t1 | MTR_7g051430 | 54.412 | 136 | 59 | 3 | 36 | 169 | 245 | 379 | 4.83e-43 | 151 |
| MS.gene30789.t1 | MTR_7g080180 | 45.912 | 159 | 78 | 3 | 34 | 186 | 245 | 401 | 1.42e-40 | 144 |
| MS.gene30789.t1 | MTR_7g080180 | 46.497 | 157 | 76 | 3 | 36 | 186 | 247 | 401 | 2.47e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30789.t1 | AT4G12910 | 53.488 | 129 | 58 | 1 | 36 | 164 | 250 | 376 | 1.25e-42 | 149 |
| MS.gene30789.t1 | AT4G12910 | 53.488 | 129 | 58 | 1 | 36 | 164 | 250 | 376 | 1.70e-42 | 150 |
| MS.gene30789.t1 | AT3G25420 | 48.889 | 135 | 63 | 2 | 34 | 164 | 241 | 373 | 5.06e-38 | 137 |
Find 50 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTGATTTAGCAGAAT+TGG | 0.262392 | 3.1:+59545557 | None:intergenic |
| AGATTATCACATCCTATATT+AGG | 0.278941 | 3.1:-59546241 | MS.gene30789:CDS |
| ACTTTGCCTTTCAACCAATT+TGG | 0.281351 | 3.1:+59545473 | None:intergenic |
| CATACCTTGGTCCAGCTATA+TGG | 0.285880 | 3.1:+59547117 | None:intergenic |
| CATCTCTCACAGGTGCTCTA+AGG | 0.317256 | 3.1:+59546138 | None:intergenic |
| CCGTCTAGTTTCCGTGAGTT+AGG | 0.343796 | 3.1:-59546215 | MS.gene30789:CDS |
| TGGCAATTGATGATTTCTTC+AGG | 0.362023 | 3.1:-59547198 | MS.gene30789:CDS |
| CATCACTTCATCACCAACTT+TGG | 0.376737 | 3.1:+59545512 | None:intergenic |
| ATCTCTCACAGGTGCTCTAA+GGG | 0.423846 | 3.1:+59546139 | None:intergenic |
| GAAGTCACTTGAGGCCAAAT+TGG | 0.431505 | 3.1:-59545487 | MS.gene30789:CDS |
| ACTAGACGGTAACCTAATAT+AGG | 0.445194 | 3.1:+59546229 | None:intergenic |
| TTCTGCTAAATCAATTGAAA+AGG | 0.460788 | 3.1:-59545553 | MS.gene30789:CDS |
| GATTGAGGTGCAGAGTTGGC+AGG | 0.485652 | 3.1:+59547139 | None:intergenic |
| GGTTGAACAATGAAGAAGTC+AGG | 0.487179 | 3.1:-59545873 | MS.gene30789:CDS |
| GCCTCTGTGCCGTGGTAGCA+TGG | 0.493000 | 3.1:+59546269 | None:intergenic |
| TTTGCTGCTTCAAAATTGAA+AGG | 0.501124 | 3.1:+59547174 | None:intergenic |
| AAAGAATGTTCGGTCGTGCT+TGG | 0.503362 | 3.1:-59546163 | MS.gene30789:CDS |
| TTTGAAGCAGCAAAGACAAA+GGG | 0.512920 | 3.1:-59547165 | MS.gene30789:CDS |
| TTGAGGCCAAATTGGTTGAA+AGG | 0.513337 | 3.1:-59545479 | MS.gene30789:CDS |
| GAGATTAACCGCGAGTGTGA+TGG | 0.514971 | 3.1:-59546465 | MS.gene30789:CDS |
| TGCACCTCAATCCATATAGC+TGG | 0.517012 | 3.1:-59547128 | MS.gene30789:CDS |
| TTGATAAGTTGTGGCCAAGT+TGG | 0.517392 | 3.1:+59546107 | None:intergenic |
| AGATTAACCGCGAGTGTGAT+GGG | 0.518035 | 3.1:-59546464 | MS.gene30789:CDS |
| CCTGTGAGGAAAAGAATGTT+CGG | 0.536839 | 3.1:-59546173 | MS.gene30789:CDS |
| AAAGCATTAAAAGCCAAAGT+TGG | 0.538383 | 3.1:-59545525 | MS.gene30789:CDS |
| TATGGATTGAGGTGCAGAGT+TGG | 0.550426 | 3.1:+59547135 | None:intergenic |
| AAGAGATGGTAGACATTCAT+CGG | 0.557042 | 3.1:-59545192 | MS.gene30789:CDS |
| GAGATGGCAACGTACCAACT+TGG | 0.557515 | 3.1:-59546121 | MS.gene30789:CDS |
| TTTCAGTCTCACCTAACTCA+CGG | 0.568224 | 3.1:+59546204 | None:intergenic |
| GTAAAGAAACATACTGTGCA+TGG | 0.569087 | 3.1:+59546071 | None:intergenic |
| TGGTCCAGCTATATGGATTG+AGG | 0.571480 | 3.1:+59547124 | None:intergenic |
| CTTAGAGCACCTGTGAGAGA+TGG | 0.577548 | 3.1:-59546137 | MS.gene30789:CDS |
| TTGGTTGAAAGGCAAAGTAA+AGG | 0.579751 | 3.1:-59545468 | MS.gene30789:intron |
| GGTACGTTGCCATCTCTCAC+AGG | 0.581740 | 3.1:+59546128 | None:intergenic |
| TCTTATCTGCCTCTGTGCCG+TGG | 0.592423 | 3.1:+59546261 | None:intergenic |
| TTGTTGCTATTGATAAGTTG+TGG | 0.616997 | 3.1:+59546098 | None:intergenic |
| ATGGCTCTGTTGCAAATGCA+TGG | 0.623040 | 3.1:-59545894 | MS.gene30789:CDS |
| CAAAGTTGGTGATGAAGTGA+TGG | 0.627478 | 3.1:-59545511 | MS.gene30789:CDS |
| ACAAATTTAGAAACAAGAGA+TGG | 0.638643 | 3.1:-59545206 | MS.gene30789:intron |
| CCTAACTCACGGAAACTAGA+CGG | 0.643978 | 3.1:+59546215 | None:intergenic |
| AGAAATTCCCATCACACTCG+CGG | 0.644090 | 3.1:+59546457 | None:intergenic |
| ATTCTAGAACCATGCTACCA+CGG | 0.649207 | 3.1:-59546278 | MS.gene30789:CDS |
| GGAGTCTAGCTACCGCCTCG+AGG | 0.654902 | 3.1:-59545171 | MS.gene30789:CDS |
| GAAAGCAATTCACACTGCAG+AGG | 0.668971 | 3.1:-59545851 | MS.gene30789:intron |
| TCTCTCACAGGTGCTCTAAG+GGG | 0.683162 | 3.1:+59546140 | None:intergenic |
| TGCTTCAATGATCCTCGAGG+CGG | 0.695198 | 3.1:+59545159 | None:intergenic |
| CAATCCATATAGCTGGACCA+AGG | 0.709270 | 3.1:-59547121 | MS.gene30789:intron |
| AGTGATGGTGAAGTCACTTG+AGG | 0.722649 | 3.1:-59545496 | MS.gene30789:CDS |
| TGTTGCTTCAATGATCCTCG+AGG | 0.725983 | 3.1:+59545156 | None:intergenic |
| ACCATGCTACCACGGCACAG+AGG | 0.736692 | 3.1:-59546270 | MS.gene30789:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTAGCATTTCTA+AGG | + | chr3.1:59546411-59546430 | None:intergenic | 15.0% |
| !! | ATATAAATCGAAAAATAACA+TGG | + | chr3.1:59546993-59547012 | None:intergenic | 15.0% |
| !! | TTATAAGAAATAAGTGAATT+TGG | - | chr3.1:59546008-59546027 | MS.gene30789:intron | 15.0% |
| !!! | TATTTCTATAACATAAGATA+AGG | + | chr3.1:59545485-59545504 | None:intergenic | 15.0% |
| !!! | TTGATGATTCTTATTATTTT+AGG | - | chr3.1:59546037-59546056 | MS.gene30789:intron | 15.0% |
| !!! | TTTATTTTTCTTCTTCTTTT+CGG | - | chr3.1:59547132-59547151 | MS.gene30789:CDS | 15.0% |
| !!! | TTTTTAAAAAATTCATACCT+TGG | + | chr3.1:59545263-59545282 | None:intergenic | 15.0% |
| !! | AGAGTCTAAATATATAATAC+TGG | + | chr3.1:59545659-59545678 | None:intergenic | 20.0% |
| !! | TATAAAATACCAATCATGAT+GGG | - | chr3.1:59546669-59546688 | MS.gene30789:intron | 20.0% |
| !! | TTATACTAAATATACATCGA+AGG | + | chr3.1:59546654-59546673 | None:intergenic | 20.0% |
| !!! | AAAATCAGTTGAATTTTGAA+AGG | - | chr3.1:59545279-59545298 | MS.gene30789:intron | 20.0% |
| !!! | AAATCAGTTGAATTTTGAAA+GGG | - | chr3.1:59545280-59545299 | MS.gene30789:intron | 20.0% |
| !!! | AATAGATTTTCTTTTAGACA+AGG | + | chr3.1:59546947-59546966 | None:intergenic | 20.0% |
| !!! | TATTATTTTAGGACATTGAT+GGG | - | chr3.1:59546048-59546067 | MS.gene30789:intron | 20.0% |
| !!! | TTATTATTTTAGGACATTGA+TGG | - | chr3.1:59546047-59546066 | MS.gene30789:intron | 20.0% |
| ! | AAATCAACTAGTAGCTAATA+AGG | + | chr3.1:59546355-59546374 | None:intergenic | 25.0% |
| ! | ACAAATTTAGAAACAAGAGA+TGG | - | chr3.1:59547158-59547177 | MS.gene30789:CDS | 25.0% |
| ! | AGATTATCACATCCTATATT+AGG | - | chr3.1:59546123-59546142 | MS.gene30789:CDS | 25.0% |
| ! | GCTAATAAGGAGATATTAAA+TGG | + | chr3.1:59546342-59546361 | None:intergenic | 25.0% |
| ! | GGCTAAATAAATCAAACAAT+AGG | + | chr3.1:59546776-59546795 | None:intergenic | 25.0% |
| ! | GTATAAAATACCAATCATGA+TGG | - | chr3.1:59546668-59546687 | MS.gene30789:intron | 25.0% |
| ! | TTACAAGACAATATATAGCA+AGG | + | chr3.1:59545843-59545862 | None:intergenic | 25.0% |
| ! | TTCTGCTAAATCAATTGAAA+AGG | - | chr3.1:59546811-59546830 | MS.gene30789:intron | 25.0% |
| !! | TTCAATTGATTTAGCAGAAT+TGG | + | chr3.1:59546810-59546829 | None:intergenic | 25.0% |
| !! | TTTTGACATTCAAAGTATAG+AGG | + | chr3.1:59546558-59546577 | None:intergenic | 25.0% |
| !!! | TCTCTTGTTTCTAAATTTGT+TGG | + | chr3.1:59547158-59547177 | None:intergenic | 25.0% |
| ACACAATATTGAAACTGAAG+AGG | + | chr3.1:59547088-59547107 | None:intergenic | 30.0% | |
| ATTTATTTAGCCCTTCCTAT+AGG | - | chr3.1:59546784-59546803 | MS.gene30789:intron | 30.0% | |
| CACAATATTGAAACTGAAGA+GGG | + | chr3.1:59547087-59547106 | None:intergenic | 30.0% | |
| CATAAACGTCTATCATGTAA+GGG | + | chr3.1:59545521-59545540 | None:intergenic | 30.0% | |
| CATGACCTAACAATATCTTT+AGG | - | chr3.1:59546447-59546466 | MS.gene30789:CDS | 30.0% | |
| GATGATTTCTTCTCATAGTT+TGG | - | chr3.1:59545306-59545325 | MS.gene30789:intron | 30.0% | |
| GTTACAGATGAACAAATTGA+TGG | - | chr3.1:59545706-59545725 | MS.gene30789:intron | 30.0% | |
| TATCTCAGATGAATTGTTTG+AGG | - | chr3.1:59545765-59545784 | MS.gene30789:intron | 30.0% | |
| TGAATTACACAACTCTTGTT+TGG | + | chr3.1:59545571-59545590 | None:intergenic | 30.0% | |
| TGCACAATAACTATCTTTGA+AGG | + | chr3.1:59546750-59546769 | None:intergenic | 30.0% | |
| TGCTATATAGCATTGTTCTT+TGG | - | chr3.1:59547026-59547045 | MS.gene30789:intron | 30.0% | |
| ! | AAAGCATTAAAAGCCAAAGT+TGG | - | chr3.1:59546839-59546858 | MS.gene30789:intron | 30.0% |
| ! | ACCTAACAATATCTTTAGGA+TGG | - | chr3.1:59546451-59546470 | MS.gene30789:CDS | 30.0% |
| ! | TTCCAAACTTGCTCTTAAAA+TGG | + | chr3.1:59545801-59545820 | None:intergenic | 30.0% |
| ! | TTGTTGCTATTGATAAGTTG+TGG | + | chr3.1:59546269-59546288 | None:intergenic | 30.0% |
| ! | TTTGCTGCTTCAAAATTGAA+AGG | + | chr3.1:59545193-59545212 | None:intergenic | 30.0% |
| !! | TACCATTTTAAGAGCAAGTT+TGG | - | chr3.1:59545796-59545815 | MS.gene30789:intron | 30.0% |
| !! | TAGGTCATGTTACTTGTTTT+TGG | + | chr3.1:59546436-59546455 | None:intergenic | 30.0% |
| !! | TTCTTCTCATAGTTTGGTTT+TGG | - | chr3.1:59545312-59545331 | MS.gene30789:intron | 30.0% |
| !!! | TCTTCTCATAGTTTGGTTTT+GGG | - | chr3.1:59545313-59545332 | MS.gene30789:intron | 30.0% |
| AAGAGATGGTAGACATTCAT+CGG | - | chr3.1:59547172-59547191 | MS.gene30789:CDS | 35.0% | |
| ACTAGACGGTAACCTAATAT+AGG | + | chr3.1:59546138-59546157 | None:intergenic | 35.0% | |
| ACTTTGCCTTTCAACCAATT+TGG | + | chr3.1:59546894-59546913 | None:intergenic | 35.0% | |
| ATATATTTAGACTCTCCTGC+TGG | - | chr3.1:59545664-59545683 | MS.gene30789:intron | 35.0% | |
| CAAGCTTGCAAAAATTGATG+AGG | - | chr3.1:59545958-59545977 | MS.gene30789:intron | 35.0% | |
| CTCTTGTTCCATTTGTACAT+GGG | - | chr3.1:59545734-59545753 | MS.gene30789:intron | 35.0% | |
| GCATAAACGTCTATCATGTA+AGG | + | chr3.1:59545522-59545541 | None:intergenic | 35.0% | |
| GCCATCCTAAAGATATTGTT+AGG | + | chr3.1:59546455-59546474 | None:intergenic | 35.0% | |
| GTAAAGAAACATACTGTGCA+TGG | + | chr3.1:59546296-59546315 | None:intergenic | 35.0% | |
| TCTGATGAAACAGAAAAGTG+TGG | - | chr3.1:59546595-59546614 | MS.gene30789:intron | 35.0% | |
| TTGAAAGGCAAAGTAAAGGT+AGG | - | chr3.1:59546900-59546919 | MS.gene30789:intron | 35.0% | |
| TTGGTTGAAAGGCAAAGTAA+AGG | - | chr3.1:59546896-59546915 | MS.gene30789:intron | 35.0% | |
| ! | ATTTAGCAGAATTGGCCTAT+AGG | + | chr3.1:59546802-59546821 | None:intergenic | 35.0% |
| ! | TGGCAATTGATGATTTCTTC+AGG | - | chr3.1:59545166-59545185 | MS.gene30789:CDS | 35.0% |
| ! | TTTGAAGCAGCAAAGACAAA+GGG | - | chr3.1:59545199-59545218 | MS.gene30789:CDS | 35.0% |
| !! | CAGTTGAATTTTGAAAGGGA+AGG | - | chr3.1:59545284-59545303 | MS.gene30789:intron | 35.0% |
| !! | TTTTGGGTAGAGACTCTATA+GGG | - | chr3.1:59545329-59545348 | MS.gene30789:intron | 35.0% |
| !!! | TTTTGAAGCAGCAAAGACAA+AGG | - | chr3.1:59545198-59545217 | MS.gene30789:CDS | 35.0% |
| CATCACTTCATCACCAACTT+TGG | + | chr3.1:59546855-59546874 | None:intergenic | 40.0% | |
| CCTGTGAGGAAAAGAATGTT+CGG | - | chr3.1:59546191-59546210 | MS.gene30789:CDS | 40.0% | |
| GACATCATTCCCATCATGAT+TGG | + | chr3.1:59546681-59546700 | None:intergenic | 40.0% | |
| GCTCTTGTTCCATTTGTACA+TGG | - | chr3.1:59545733-59545752 | MS.gene30789:intron | 40.0% | |
| GCTGGTTACATAGTTGGAAA+TGG | - | chr3.1:59545682-59545701 | MS.gene30789:intron | 40.0% | |
| GGTTGAACAATGAAGAAGTC+AGG | - | chr3.1:59546491-59546510 | MS.gene30789:intron | 40.0% | |
| GTTCCATTTGTACATGGGAT+GGG | - | chr3.1:59545739-59545758 | MS.gene30789:intron | 40.0% | |
| TGTTCCATTTGTACATGGGA+TGG | - | chr3.1:59545738-59545757 | MS.gene30789:intron | 40.0% | |
| TTGAGGCCAAATTGGTTGAA+AGG | - | chr3.1:59546885-59546904 | MS.gene30789:intron | 40.0% | |
| TTGATAAGTTGTGGCCAAGT+TGG | + | chr3.1:59546260-59546279 | None:intergenic | 40.0% | |
| TTTCAGTCTCACCTAACTCA+CGG | + | chr3.1:59546163-59546182 | None:intergenic | 40.0% | |
| TTTCCAACTATGTAACCAGC+AGG | + | chr3.1:59545682-59545701 | None:intergenic | 40.0% | |
| ! | AGAAAAGTGTGGTCAGTAGT+TGG | - | chr3.1:59546606-59546625 | MS.gene30789:intron | 40.0% |
| ! | ATTCTTTTCCTCACAGGATG+AGG | + | chr3.1:59546188-59546207 | None:intergenic | 40.0% |
| ! | GAAAAGTGTGGTCAGTAGTT+GGG | - | chr3.1:59546607-59546626 | MS.gene30789:intron | 40.0% |
| !! | ATTCTAGAACCATGCTACCA+CGG | - | chr3.1:59546086-59546105 | MS.gene30789:CDS | 40.0% |
| !! | CAAAGTTGGTGATGAAGTGA+TGG | - | chr3.1:59546853-59546872 | MS.gene30789:intron | 40.0% |
| !! | GTTTTGGGTAGAGACTCTAT+AGG | - | chr3.1:59545328-59545347 | MS.gene30789:intron | 40.0% |
| AAAGAATGTTCGGTCGTGCT+TGG | - | chr3.1:59546201-59546220 | MS.gene30789:CDS | 45.0% | |
| AAGCTCTCAAACAGTCTCAC+AGG | + | chr3.1:59545395-59545414 | None:intergenic | 45.0% | |
| AGAAATTCCCATCACACTCG+CGG | + | chr3.1:59545910-59545929 | None:intergenic | 45.0% | |
| AGACCCATCCCATGTACAAA+TGG | + | chr3.1:59545745-59545764 | None:intergenic | 45.0% | |
| AGATTAACCGCGAGTGTGAT+GGG | - | chr3.1:59545900-59545919 | MS.gene30789:intron | 45.0% | |
| ATCTCTCACAGGTGCTCTAA+GGG | + | chr3.1:59546228-59546247 | None:intergenic | 45.0% | |
| CAATCCATATAGCTGGACCA+AGG | - | chr3.1:59545243-59545262 | MS.gene30789:intron | 45.0% | |
| CATACCTTGGTCCAGCTATA+TGG | + | chr3.1:59545250-59545269 | None:intergenic | 45.0% | |
| CCTAACTCACGGAAACTAGA+CGG | + | chr3.1:59546152-59546171 | None:intergenic | 45.0% | |
| CTGAAAAACCTCATCCTGTG+AGG | - | chr3.1:59546177-59546196 | MS.gene30789:CDS | 45.0% | |
| GAAAGCAATTCACACTGCAG+AGG | - | chr3.1:59546513-59546532 | MS.gene30789:intron | 45.0% | |
| GAAGTCACTTGAGGCCAAAT+TGG | - | chr3.1:59546877-59546896 | MS.gene30789:intron | 45.0% | |
| TGCACCTCAATCCATATAGC+TGG | - | chr3.1:59545236-59545255 | MS.gene30789:intron | 45.0% | |
| ! | AGCAGAATTGGCCTATAGGA+AGG | + | chr3.1:59546798-59546817 | None:intergenic | 45.0% |
| ! | AGTGATGGTGAAGTCACTTG+AGG | - | chr3.1:59546868-59546887 | MS.gene30789:intron | 45.0% |
| ! | ATGGCTCTGTTGCAAATGCA+TGG | - | chr3.1:59546470-59546489 | MS.gene30789:intron | 45.0% |
| ! | CCGAACATTCTTTTCCTCAC+AGG | + | chr3.1:59546194-59546213 | None:intergenic | 45.0% |
| ! | GCAGAATTGGCCTATAGGAA+GGG | + | chr3.1:59546797-59546816 | None:intergenic | 45.0% |
| ! | TATGGATTGAGGTGCAGAGT+TGG | + | chr3.1:59545232-59545251 | None:intergenic | 45.0% |
| ! | TCTCCTGCTGGTTACATAGT+TGG | - | chr3.1:59545676-59545695 | MS.gene30789:intron | 45.0% |
| ! | TGGTCCAGCTATATGGATTG+AGG | + | chr3.1:59545243-59545262 | None:intergenic | 45.0% |
| CAATTCACACTGCAGAGGTG+AGG | - | chr3.1:59546518-59546537 | MS.gene30789:intron | 50.0% | |
| CATCTCTCACAGGTGCTCTA+AGG | + | chr3.1:59546229-59546248 | None:intergenic | 50.0% | |
| GAGATGGCAACGTACCAACT+TGG | - | chr3.1:59546243-59546262 | MS.gene30789:CDS | 50.0% | |
| GAGATTAACCGCGAGTGTGA+TGG | - | chr3.1:59545899-59545918 | MS.gene30789:intron | 50.0% | |
| GTCATGTTGCACTCTGTTGC+AGG | - | chr3.1:59545877-59545896 | MS.gene30789:CDS | 50.0% | |
| ! | CCGTCTAGTTTCCGTGAGTT+AGG | - | chr3.1:59546149-59546168 | MS.gene30789:CDS | 50.0% |
| ! | CTTAGAGCACCTGTGAGAGA+TGG | - | chr3.1:59546227-59546246 | MS.gene30789:CDS | 50.0% |
| ! | TCTCTCACAGGTGCTCTAAG+GGG | + | chr3.1:59546227-59546246 | None:intergenic | 50.0% |
| GATTGAGGTGCAGAGTTGGC+AGG | + | chr3.1:59545228-59545247 | None:intergenic | 55.0% | |
| GGTACGTTGCCATCTCTCAC+AGG | + | chr3.1:59546239-59546258 | None:intergenic | 55.0% | |
| TCTTATCTGCCTCTGTGCCG+TGG | + | chr3.1:59546106-59546125 | None:intergenic | 55.0% | |
| ACCATGCTACCACGGCACAG+AGG | - | chr3.1:59546094-59546113 | MS.gene30789:CDS | 60.0% | |
| GCCTCTGTGCCGTGGTAGCA+TGG | + | chr3.1:59546098-59546117 | None:intergenic | 65.0% | |
| GGAGTCTAGCTACCGCCTCG+AGG | - | chr3.1:59547193-59547212 | MS.gene30789:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 59545163 | 59547223 | 59545163 | ID=MS.gene30789 |
| chr3.1 | mRNA | 59545163 | 59547223 | 59545163 | ID=MS.gene30789.t1;Parent=MS.gene30789 |
| chr3.1 | exon | 59547122 | 59547223 | 59547122 | ID=MS.gene30789.t1.exon1;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59547122 | 59547223 | 59547122 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| chr3.1 | exon | 59546407 | 59546487 | 59546407 | ID=MS.gene30789.t1.exon2;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59546407 | 59546487 | 59546407 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| chr3.1 | exon | 59546085 | 59546327 | 59546085 | ID=MS.gene30789.t1.exon3;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59546085 | 59546327 | 59546085 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| chr3.1 | exon | 59545852 | 59545917 | 59545852 | ID=MS.gene30789.t1.exon4;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59545852 | 59545917 | 59545852 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| chr3.1 | exon | 59545469 | 59545580 | 59545469 | ID=MS.gene30789.t1.exon5;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59545469 | 59545580 | 59545469 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| chr3.1 | exon | 59545163 | 59545218 | 59545163 | ID=MS.gene30789.t1.exon6;Parent=MS.gene30789.t1 |
| chr3.1 | CDS | 59545163 | 59545218 | 59545163 | ID=cds.MS.gene30789.t1;Parent=MS.gene30789.t1 |
| Gene Sequence |
| Protein sequence |
