Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31000.t1 | XP_013461553.1 | 95.2 | 518 | 24 | 1 | 1 | 518 | 1 | 517 | 7.10E-259 | 902.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31000.t1 | F4J8V5 | 48.0 | 527 | 229 | 11 | 5 | 516 | 8 | 504 | 4.7e-102 | 373.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31000.t1 | A0A072V2J6 | 95.2 | 518 | 24 | 1 | 1 | 518 | 1 | 517 | 5.1e-259 | 902.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049318 | MS.gene31000 | 0.937707 | 2.23E-98 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31000.t1 | MTR_3g095570 | 94.990 | 519 | 25 | 1 | 1 | 519 | 1 | 518 | 0.0 | 865 |
| MS.gene31000.t1 | MTR_3g095570 | 95.349 | 516 | 23 | 1 | 1 | 516 | 1 | 515 | 0.0 | 865 |
| MS.gene31000.t1 | MTR_3g095570 | 94.798 | 519 | 26 | 1 | 1 | 519 | 1 | 518 | 0.0 | 860 |
| MS.gene31000.t1 | MTR_8g093050 | 53.171 | 410 | 155 | 12 | 1 | 391 | 1 | 392 | 9.29e-112 | 344 |
| MS.gene31000.t1 | MTR_8g093050 | 60.656 | 61 | 21 | 1 | 456 | 516 | 388 | 445 | 9.96e-16 | 80.5 |
| MS.gene31000.t1 | MTR_8g093050 | 54.211 | 380 | 140 | 10 | 1 | 364 | 1 | 362 | 6.70e-109 | 336 |
| MS.gene31000.t1 | MTR_8g093050 | 57.353 | 68 | 26 | 1 | 449 | 516 | 355 | 419 | 1.88e-16 | 82.8 |
| MS.gene31000.t1 | MTR_5g068710 | 33.826 | 541 | 259 | 17 | 1 | 509 | 1 | 474 | 1.15e-74 | 247 |
| MS.gene31000.t1 | MTR_5g068710 | 34.146 | 533 | 252 | 17 | 9 | 509 | 8 | 473 | 3.72e-74 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31000.t1 | AT3G18770 | 49.234 | 522 | 218 | 14 | 11 | 516 | 14 | 504 | 6.82e-97 | 307 |
| MS.gene31000.t1 | AT3G49590 | 31.103 | 553 | 273 | 15 | 10 | 509 | 9 | 506 | 2.11e-58 | 205 |
| MS.gene31000.t1 | AT3G49590 | 30.983 | 539 | 277 | 15 | 10 | 509 | 9 | 491 | 1.37e-56 | 199 |
| MS.gene31000.t1 | AT3G49590 | 30.983 | 539 | 277 | 15 | 10 | 509 | 9 | 491 | 1.37e-56 | 199 |
Find 96 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTTTGGAGAGAAATTA+AGG | 0.234169 | 3.3:+79234915 | None:intergenic |
| AGAAACCCCTTTGAAGAATT+AGG | 0.243271 | 3.3:-79234875 | MS.gene31000:CDS |
| GCTTCTTGTTTAGTAGTAAA+TGG | 0.254563 | 3.3:+79234575 | None:intergenic |
| TTATGAAAGCAAGAAAATTA+AGG | 0.283270 | 3.3:-79234804 | MS.gene31000:CDS |
| TTCTGGTAGGCTGTGTTTAT+CGG | 0.301005 | 3.3:-79234513 | MS.gene31000:CDS |
| TAGATTGAACCATTTGTCTC+TGG | 0.302069 | 3.3:+79235036 | None:intergenic |
| CAACTATGTCTCCTCGAAAA+TGG | 0.326218 | 3.3:+79234323 | None:intergenic |
| AATTGTGGTTGATGTTGTTT+TGG | 0.332000 | 3.3:-79234948 | MS.gene31000:CDS |
| GAATTAGCAACTTCAGCATT+AGG | 0.344777 | 3.3:+79233996 | None:intergenic |
| TTTACAAAAGATCGAACCTT+TGG | 0.360433 | 3.3:+79234902 | None:intergenic |
| GAGCTCTAGCAGGTCTTATC+AGG | 0.364942 | 3.3:-79233669 | MS.gene31000:CDS |
| GTGCACCTTGAAATTCTAAT+AGG | 0.367047 | 3.3:+79233933 | None:intergenic |
| TTCACCTTCACCTACACATT+CGG | 0.390828 | 3.3:-79234255 | MS.gene31000:CDS |
| ATGAGAAGATTGTTGAAAGA+TGG | 0.400050 | 3.3:-79234835 | MS.gene31000:CDS |
| GAGGGAGATGGAGAGAAATT+CGG | 0.400789 | 3.3:+79234104 | None:intergenic |
| CTACTCCTATTAGAATTTCA+AGG | 0.412567 | 3.3:-79233938 | MS.gene31000:CDS |
| ACTCCTGTGGATACTAATTC+TGG | 0.420684 | 3.3:-79234530 | MS.gene31000:CDS |
| AAAACAACATCAACCACAAT+TGG | 0.420756 | 3.3:+79234950 | None:intergenic |
| TCTTGTAGTGTTTGCAGTGT+TGG | 0.448276 | 3.3:+79234769 | None:intergenic |
| GCTGAAGTTGCTAATTCCTC+TGG | 0.449371 | 3.3:-79233990 | MS.gene31000:CDS |
| TGTCATGGCATACTCTGGTT+AGG | 0.451333 | 3.3:-79233264 | None:intergenic |
| ATAAGACCTGCTAGAGCTCC+TGG | 0.452474 | 3.3:+79233673 | None:intergenic |
| TGTGGAGACAAAGGAGTTGT+TGG | 0.454147 | 3.3:+79234452 | None:intergenic |
| ATGATGCAACATACCTTCTC+AGG | 0.465690 | 3.3:+79233864 | None:intergenic |
| TAAGTTTGTGTTCACTCCTG+TGG | 0.467225 | 3.3:-79234543 | MS.gene31000:CDS |
| GATGAAGAAGGAGAGGGAGA+TGG | 0.469660 | 3.3:+79234092 | None:intergenic |
| CACTTGAAAACGCTGACCTA+TGG | 0.470379 | 3.3:-79234991 | MS.gene31000:CDS |
| AATGACCGCAAACTATAGAT+AGG | 0.476662 | 3.3:+79234065 | None:intergenic |
| AGGTGATGATGAAGAAGGAG+AGG | 0.478454 | 3.3:+79234085 | None:intergenic |
| CCCTTTGAAGAATTAGGAGG+TGG | 0.478837 | 3.3:-79234869 | MS.gene31000:CDS |
| GTTTCTAATGCTAGCTCTCA+AGG | 0.480022 | 3.3:-79234218 | MS.gene31000:CDS |
| TCGTCATCATCCACGTCAAA+AGG | 0.481721 | 3.3:+79233617 | None:intergenic |
| GTATGTTTCTGATGTGAGTT+CGG | 0.485339 | 3.3:-79234477 | MS.gene31000:CDS |
| AAACCTTAATTTCTCTCCAA+AGG | 0.489105 | 3.3:-79234918 | MS.gene31000:CDS |
| CCACCTCCTAATTCTTCAAA+GGG | 0.489333 | 3.3:+79234869 | None:intergenic |
| TGTGATGGCATTCTAACAAC+AGG | 0.493637 | 3.3:+79234368 | None:intergenic |
| AGATTGAACCATTTGTCTCT+GGG | 0.504376 | 3.3:+79235037 | None:intergenic |
| TCGGTAGTCCTTTGACTGAT+CGG | 0.505474 | 3.3:-79234412 | MS.gene31000:CDS |
| GAAGATTATTGTGGCGCCAT+AGG | 0.506592 | 3.3:+79234975 | None:intergenic |
| CATCACCTATCTATAGTTTG+CGG | 0.512684 | 3.3:-79234070 | MS.gene31000:CDS |
| CTCTTGATTCTATGATTATG+TGG | 0.516420 | 3.3:+79235140 | None:intergenic |
| GACATTTCACTTGGATGAGG+AGG | 0.516778 | 3.3:+79234173 | None:intergenic |
| GGTGATGATGAAGAAGGAGA+GGG | 0.521681 | 3.3:+79234086 | None:intergenic |
| CCCACCTCCTAATTCTTCAA+AGG | 0.522947 | 3.3:+79234868 | None:intergenic |
| TGAAGCAAAGACATTTCACT+TGG | 0.523242 | 3.3:+79234164 | None:intergenic |
| GTGACGAAATACCTGCTGCC+TGG | 0.524562 | 3.3:+79233584 | None:intergenic |
| CTTCTGAGACGGAGAGAAGT+AGG | 0.524609 | 3.3:-79233911 | MS.gene31000:CDS |
| GATGACGATACAACGGATCC+AGG | 0.530434 | 3.3:-79233602 | MS.gene31000:CDS |
| GTGTTCGACCCAGAGACAAA+TGG | 0.534628 | 3.3:-79235045 | MS.gene31000:CDS |
| CAATAATCTTCAGCCAATTG+TGG | 0.545469 | 3.3:-79234963 | MS.gene31000:CDS |
| TTCAAGGTGCACTTCTGAGA+CGG | 0.551391 | 3.3:-79233922 | MS.gene31000:CDS |
| TAGATAGGTGATGATGAAGA+AGG | 0.554958 | 3.3:+79234080 | None:intergenic |
| GAATAATAATTAACTGTAGG+AGG | 0.556994 | 3.3:+79234275 | None:intergenic |
| AAAGACATTTCACTTGGATG+AGG | 0.562423 | 3.3:+79234170 | None:intergenic |
| GGTGAATAATAATTAACTGT+AGG | 0.562951 | 3.3:+79234272 | None:intergenic |
| TCAGCATTAGGTATGTTGAC+AGG | 0.567209 | 3.3:+79234008 | None:intergenic |
| CACACTTGAAGTTGATGTCA+TGG | 0.568728 | 3.3:-79233279 | MS.gene31000:CDS |
| GAAGATGAAGAAGTTGAAGA+TGG | 0.569202 | 3.3:+79235076 | None:intergenic |
| ATACAACGGATCCAGGCAGC+AGG | 0.570876 | 3.3:-79233595 | MS.gene31000:intron |
| ACATAATCAGTTATAACTTG+TGG | 0.573505 | 3.3:+79234434 | None:intergenic |
| GTTATAACTTGTGGAGACAA+AGG | 0.588424 | 3.3:+79234443 | None:intergenic |
| CTACCAGAATTAGTATCCAC+AGG | 0.589896 | 3.3:+79234527 | None:intergenic |
| TGCTTCAGTTTGAGCGTGTG+AGG | 0.590550 | 3.3:+79235207 | None:intergenic |
| CTCGAAAATGGCAATGACGA+CGG | 0.592943 | 3.3:+79234335 | None:intergenic |
| CTCATCAACCGATCAGTCAA+AGG | 0.593790 | 3.3:+79234404 | None:intergenic |
| TGCTGTAGGACATTCTCTGA+GGG | 0.593823 | 3.3:+79235012 | None:intergenic |
| GACGGAGAAGAGCCATGTGA+TGG | 0.601182 | 3.3:+79234353 | None:intergenic |
| GAAATTCTAATAGGAGTAGA+CGG | 0.601578 | 3.3:+79233942 | None:intergenic |
| GATGGAGAGAAATTCGGTGA+GGG | 0.602678 | 3.3:+79234110 | None:intergenic |
| CTTTGACTGATCGGTTGATG+AGG | 0.605573 | 3.3:-79234403 | MS.gene31000:CDS |
| ACATTCGGAATCACACACAT+TGG | 0.606208 | 3.3:-79234240 | MS.gene31000:CDS |
| GTTGATGTCATGGCATACTC+TGG | 0.609695 | 3.3:-79233269 | MS.gene31000:CDS |
| ATCATGCATTATGCCTGAGA+AGG | 0.611310 | 3.3:-79233877 | MS.gene31000:intron |
| CTGTGGATACTAATTCTGGT+AGG | 0.618588 | 3.3:-79234526 | MS.gene31000:CDS |
| TCTGGGTCGAACACTTGATG+AGG | 0.624098 | 3.3:+79235054 | None:intergenic |
| GGATGAGGAGGCAAACTAGA+GGG | 0.624466 | 3.3:+79234185 | None:intergenic |
| AGATGGAGAGAAATTCGGTG+AGG | 0.625978 | 3.3:+79234109 | None:intergenic |
| ATTCCTCTGGACATAGCAGT+AGG | 0.626939 | 3.3:-79233977 | MS.gene31000:CDS |
| AACCCCTTTGAAGAATTAGG+AGG | 0.632921 | 3.3:-79234872 | MS.gene31000:CDS |
| CAATTGGCTGAAGATTATTG+TGG | 0.637979 | 3.3:+79234966 | None:intergenic |
| CCTTTGAAGAATTAGGAGGT+GGG | 0.638950 | 3.3:-79234868 | MS.gene31000:CDS |
| ACACTGCAAACACTACAAGA+AGG | 0.644134 | 3.3:-79234766 | MS.gene31000:CDS |
| GTTGTTAGAATGCCATCACA+TGG | 0.644232 | 3.3:-79234365 | MS.gene31000:CDS |
| GAACTCACATCAGAAACATA+CGG | 0.644354 | 3.3:+79234479 | None:intergenic |
| ATGCCTACTGCTATGTCCAG+AGG | 0.647453 | 3.3:+79233974 | None:intergenic |
| ATTCTAACAACAGGAAGCGA+CGG | 0.649152 | 3.3:+79234377 | None:intergenic |
| GTGCTGTAGGACATTCTCTG+AGG | 0.655266 | 3.3:+79235011 | None:intergenic |
| CAAGTTATAACTGATTATGT+CGG | 0.655806 | 3.3:-79234431 | MS.gene31000:CDS |
| CACCTCCTAATTCTTCAAAG+GGG | 0.662367 | 3.3:+79234870 | None:intergenic |
| TGAGGAGGCAAACTAGAGGG+TGG | 0.663076 | 3.3:+79234188 | None:intergenic |
| TGGATGAGGAGGCAAACTAG+AGG | 0.668714 | 3.3:+79234184 | None:intergenic |
| CGTGGATGATGACGATACAA+CGG | 0.685449 | 3.3:-79233609 | MS.gene31000:CDS |
| GTGTGTGATTCCGAATGTGT+AGG | 0.689442 | 3.3:+79234245 | None:intergenic |
| GATTCCGAATGTGTAGGTGA+AGG | 0.732416 | 3.3:+79234251 | None:intergenic |
| CTCCTGGAAAATGAAATCTG+TGG | 0.734408 | 3.3:+79233689 | None:intergenic |
| ATTCTAATAGGAGTAGACGG+CGG | 0.805061 | 3.3:+79233945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCTAATTTATATTAATATA+TGG | + | chr3.3:79235126-79235145 | None:intergenic | 10.0% |
| !! | AACAAAACATTCAATATGAT+TGG | + | chr3.3:79234658-79234677 | None:intergenic | 20.0% |
| !! | TTATGAAAGCAAGAAAATTA+AGG | - | chr3.3:79233681-79233700 | MS.gene31000:CDS | 20.0% |
| ! | ACATAATCAGTTATAACTTG+TGG | + | chr3.3:79234054-79234073 | None:intergenic | 25.0% |
| ! | CAAGTTATAACTGATTATGT+CGG | - | chr3.3:79234054-79234073 | MS.gene31000:CDS | 25.0% |
| ! | GAATAATAATTAACTGTAGG+AGG | + | chr3.3:79234213-79234232 | None:intergenic | 25.0% |
| ! | GGTGAATAATAATTAACTGT+AGG | + | chr3.3:79234216-79234235 | None:intergenic | 25.0% |
| ! | TCCTTAAAAATCTTAAAAGC+AGG | + | chr3.3:79233826-79233845 | None:intergenic | 25.0% |
| !!! | ACCTGCTTTTAAGATTTTTA+AGG | - | chr3.3:79233822-79233841 | MS.gene31000:intron | 25.0% |
| !!! | AGAAATCTACTTTGCTTTTA+AGG | - | chr3.3:79233773-79233792 | MS.gene31000:intron | 25.0% |
| !!! | TTCATCTTACTGTTGTTTTT+TGG | - | chr3.3:79234697-79234716 | MS.gene31000:CDS | 25.0% |
| AAAACAACATCAACCACAAT+TGG | + | chr3.3:79233538-79233557 | None:intergenic | 30.0% | |
| AAACCTTAATTTCTCTCCAA+AGG | - | chr3.3:79233567-79233586 | MS.gene31000:intron | 30.0% | |
| ATCTAGCAATAGATCCATAA+AGG | + | chr3.3:79235098-79235117 | None:intergenic | 30.0% | |
| ATGAGAAGATTGTTGAAAGA+TGG | - | chr3.3:79233650-79233669 | MS.gene31000:CDS | 30.0% | |
| ATGGATCTATTGCTAGATTA+TGG | - | chr3.3:79235100-79235119 | MS.gene31000:CDS | 30.0% | |
| ATTTCGTCACTAAAATTCGT+AGG | - | chr3.3:79234914-79234933 | MS.gene31000:CDS | 30.0% | |
| CGAAAACAATACCAAACAAA+GGG | + | chr3.3:79235150-79235169 | None:intergenic | 30.0% | |
| CTACTCCTATTAGAATTTCA+AGG | - | chr3.3:79234547-79234566 | MS.gene31000:CDS | 30.0% | |
| CTCTTGATTCTATGATTATG+TGG | + | chr3.3:79233348-79233367 | None:intergenic | 30.0% | |
| GAAATTCTAATAGGAGTAGA+CGG | + | chr3.3:79234546-79234565 | None:intergenic | 30.0% | |
| GCATCAACTACTTATATCAA+AGG | + | chr3.3:79234967-79234986 | None:intergenic | 30.0% | |
| TAAATTAGCAACCCTTTGTT+TGG | - | chr3.3:79235136-79235155 | MS.gene31000:CDS | 30.0% | |
| TTTACAAAAGATCGAACCTT+TGG | + | chr3.3:79233586-79233605 | None:intergenic | 30.0% | |
| TTTCGTCACTAAAATTCGTA+GGG | - | chr3.3:79234915-79234934 | MS.gene31000:CDS | 30.0% | |
| ! | GCTTCTTGTTTAGTAGTAAA+TGG | + | chr3.3:79233913-79233932 | None:intergenic | 30.0% |
| ! | TCTGCATAGATGTTTTCTAT+TGG | - | chr3.3:79234721-79234740 | MS.gene31000:CDS | 30.0% |
| !! | AATTGTGGTTGATGTTGTTT+TGG | - | chr3.3:79233537-79233556 | MS.gene31000:intron | 30.0% |
| !! | CCTTTGTTTGGTATTGTTTT+CGG | - | chr3.3:79235148-79235167 | MS.gene31000:CDS | 30.0% |
| !! | GATGAGTCTAAAAAGTATTC+TGG | - | chr3.3:79234748-79234767 | MS.gene31000:CDS | 30.0% |
| AAAGACATTTCACTTGGATG+AGG | + | chr3.3:79234318-79234337 | None:intergenic | 35.0% | |
| AATGACCGCAAACTATAGAT+AGG | + | chr3.3:79234423-79234442 | None:intergenic | 35.0% | |
| AGATTGAACCATTTGTCTCT+GGG | + | chr3.3:79233451-79233470 | None:intergenic | 35.0% | |
| ATAAAGGATCCATCCCTTAA+TGG | + | chr3.3:79235082-79235101 | None:intergenic | 35.0% | |
| ATTAAGGGATGGATCCTTTA+TGG | - | chr3.3:79235081-79235100 | MS.gene31000:CDS | 35.0% | |
| CAATAATCTTCAGCCAATTG+TGG | - | chr3.3:79233522-79233541 | MS.gene31000:intron | 35.0% | |
| CAATTGGCTGAAGATTATTG+TGG | + | chr3.3:79233522-79233541 | None:intergenic | 35.0% | |
| CATCACCTATCTATAGTTTG+CGG | - | chr3.3:79234415-79234434 | MS.gene31000:CDS | 35.0% | |
| CCGAAAACAATACCAAACAA+AGG | + | chr3.3:79235151-79235170 | None:intergenic | 35.0% | |
| GAACTCACATCAGAAACATA+CGG | + | chr3.3:79234009-79234028 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGTTGAAGA+TGG | + | chr3.3:79233412-79233431 | None:intergenic | 35.0% | |
| GAATTAGCAACTTCAGCATT+AGG | + | chr3.3:79234492-79234511 | None:intergenic | 35.0% | |
| GCAGCTATACCATATTGTTA+AGG | + | chr3.3:79234997-79235016 | None:intergenic | 35.0% | |
| GCTTCAGTTCCTTAACAATA+TGG | - | chr3.3:79234985-79235004 | MS.gene31000:CDS | 35.0% | |
| GTGCACCTTGAAATTCTAAT+AGG | + | chr3.3:79234555-79234574 | None:intergenic | 35.0% | |
| TAGATTGAACCATTTGTCTC+TGG | + | chr3.3:79233452-79233471 | None:intergenic | 35.0% | |
| TGAAGCAAAGACATTTCACT+TGG | + | chr3.3:79234324-79234343 | None:intergenic | 35.0% | |
| TTCGTCACTAAAATTCGTAG+GGG | - | chr3.3:79234916-79234935 | MS.gene31000:CDS | 35.0% | |
| ! | AGAAACCCCTTTGAAGAATT+AGG | - | chr3.3:79233610-79233629 | MS.gene31000:CDS | 35.0% |
| ! | CAGGGTCTCTTTTATCTATA+TGG | + | chr3.3:79235030-79235049 | None:intergenic | 35.0% |
| ! | GAACCTTTGGAGAGAAATTA+AGG | + | chr3.3:79233573-79233592 | None:intergenic | 35.0% |
| ! | GTATGTTTCTGATGTGAGTT+CGG | - | chr3.3:79234008-79234027 | MS.gene31000:CDS | 35.0% |
| ! | GTTATAACTTGTGGAGACAA+AGG | + | chr3.3:79234045-79234064 | None:intergenic | 35.0% |
| ! | TAGATAGGTGATGATGAAGA+AGG | + | chr3.3:79234408-79234427 | None:intergenic | 35.0% |
| ! | TTTGGTATTGTTTTCGGTGA+GGG | - | chr3.3:79235154-79235173 | MS.gene31000:CDS | 35.0% |
| ACACTGCAAACACTACAAGA+AGG | - | chr3.3:79233719-79233738 | MS.gene31000:CDS | 40.0% | |
| ACATTCGGAATCACACACAT+TGG | - | chr3.3:79234245-79234264 | MS.gene31000:CDS | 40.0% | |
| ACTCCTGTGGATACTAATTC+TGG | - | chr3.3:79233955-79233974 | MS.gene31000:CDS | 40.0% | |
| ATATTGCAAAGCTCTTGCCA+TGG | - | chr3.3:79235050-79235069 | MS.gene31000:CDS | 40.0% | |
| ATCATGCATTATGCCTGAGA+AGG | - | chr3.3:79234608-79234627 | MS.gene31000:CDS | 40.0% | |
| ATGATGCAACATACCTTCTC+AGG | + | chr3.3:79234624-79234643 | None:intergenic | 40.0% | |
| ATTCTAACAACAGGAAGCGA+CGG | + | chr3.3:79234111-79234130 | None:intergenic | 40.0% | |
| ATTCTAATAGGAGTAGACGG+CGG | + | chr3.3:79234543-79234562 | None:intergenic | 40.0% | |
| CAACTATGTCTCCTCGAAAA+TGG | + | chr3.3:79234165-79234184 | None:intergenic | 40.0% | |
| CACCTCCTAATTCTTCAAAG+GGG | + | chr3.3:79233618-79233637 | None:intergenic | 40.0% | |
| CCACCTCCTAATTCTTCAAA+GGG | + | chr3.3:79233619-79233638 | None:intergenic | 40.0% | |
| CTACCAGAATTAGTATCCAC+AGG | + | chr3.3:79233961-79233980 | None:intergenic | 40.0% | |
| CTCCTGGAAAATGAAATCTG+TGG | + | chr3.3:79234799-79234818 | None:intergenic | 40.0% | |
| CTGTGGATACTAATTCTGGT+AGG | - | chr3.3:79233959-79233978 | MS.gene31000:CDS | 40.0% | |
| GCAAGAGCTTTGCAATATCA+GGG | + | chr3.3:79235048-79235067 | None:intergenic | 40.0% | |
| GTTGTTAGAATGCCATCACA+TGG | - | chr3.3:79234120-79234139 | MS.gene31000:CDS | 40.0% | |
| TAAGTTTGTGTTCACTCCTG+TGG | - | chr3.3:79233942-79233961 | MS.gene31000:CDS | 40.0% | |
| TCAGCATTAGGTATGTTGAC+AGG | + | chr3.3:79234480-79234499 | None:intergenic | 40.0% | |
| TCTTGTAGTGTTTGCAGTGT+TGG | + | chr3.3:79233719-79233738 | None:intergenic | 40.0% | |
| TGTGATGGCATTCTAACAAC+AGG | + | chr3.3:79234120-79234139 | None:intergenic | 40.0% | |
| TTCACCTTCACCTACACATT+CGG | - | chr3.3:79234230-79234249 | MS.gene31000:CDS | 40.0% | |
| TTCTGGTAGGCTGTGTTTAT+CGG | - | chr3.3:79233972-79233991 | MS.gene31000:CDS | 40.0% | |
| ! | AACCCCTTTGAAGAATTAGG+AGG | - | chr3.3:79233613-79233632 | MS.gene31000:CDS | 40.0% |
| ! | CACCACAGATTTCATTTTCC+AGG | - | chr3.3:79234794-79234813 | MS.gene31000:CDS | 40.0% |
| ! | CCTTTGAAGAATTAGGAGGT+GGG | - | chr3.3:79233617-79233636 | MS.gene31000:CDS | 40.0% |
| ! | GTTTCTAATGCTAGCTCTCA+AGG | - | chr3.3:79234267-79234286 | MS.gene31000:CDS | 40.0% |
| ! | GTTTGGTATTGTTTTCGGTG+AGG | - | chr3.3:79235153-79235172 | MS.gene31000:CDS | 40.0% |
| ! | TTTCACATGTCCTTTTGACG+TGG | - | chr3.3:79234858-79234877 | MS.gene31000:CDS | 40.0% |
| !! | CACACTTGAAGTTGATGTCA+TGG | - | chr3.3:79235206-79235225 | MS.gene31000:CDS | 40.0% |
| !! | CATTTTCGAGGAGACATAGT+TGG | - | chr3.3:79234163-79234182 | MS.gene31000:CDS | 40.0% |
| !! | GTTTTCGGTGAGGGTATATA+AGG | - | chr3.3:79235163-79235182 | MS.gene31000:CDS | 40.0% |
| ATTCCTCTGGACATAGCAGT+AGG | - | chr3.3:79234508-79234527 | MS.gene31000:CDS | 45.0% | |
| CACTTGAAAACGCTGACCTA+TGG | - | chr3.3:79233494-79233513 | MS.gene31000:intron | 45.0% | |
| CCCACCTCCTAATTCTTCAA+AGG | + | chr3.3:79233620-79233639 | None:intergenic | 45.0% | |
| CTCATCAACCGATCAGTCAA+AGG | + | chr3.3:79234084-79234103 | None:intergenic | 45.0% | |
| CTCGAAAATGGCAATGACGA+CGG | + | chr3.3:79234153-79234172 | None:intergenic | 45.0% | |
| GAAGATTATTGTGGCGCCAT+AGG | + | chr3.3:79233513-79233532 | None:intergenic | 45.0% | |
| GACATTTCACTTGGATGAGG+AGG | + | chr3.3:79234315-79234334 | None:intergenic | 45.0% | |
| GAGGGAGATGGAGAGAAATT+CGG | + | chr3.3:79234384-79234403 | None:intergenic | 45.0% | |
| GATTCCGAATGTGTAGGTGA+AGG | + | chr3.3:79234237-79234256 | None:intergenic | 45.0% | |
| GCTGAAGTTGCTAATTCCTC+TGG | - | chr3.3:79234495-79234514 | MS.gene31000:CDS | 45.0% | |
| GGCAAGAGCTTTGCAATATC+AGG | + | chr3.3:79235049-79235068 | None:intergenic | 45.0% | |
| GTGTGTGATTCCGAATGTGT+AGG | + | chr3.3:79234243-79234262 | None:intergenic | 45.0% | |
| GTTGATGTCATGGCATACTC+TGG | - | chr3.3:79235216-79235235 | MS.gene31000:CDS | 45.0% | |
| TCGGTAGTCCTTTGACTGAT+CGG | - | chr3.3:79234073-79234092 | MS.gene31000:CDS | 45.0% | |
| TCGTCATCATCCACGTCAAA+AGG | + | chr3.3:79234871-79234890 | None:intergenic | 45.0% | |
| TGCTGTAGGACATTCTCTGA+GGG | + | chr3.3:79233476-79233495 | None:intergenic | 45.0% | |
| TGTGGAGACAAAGGAGTTGT+TGG | + | chr3.3:79234036-79234055 | None:intergenic | 45.0% | |
| ! | AGATGGAGAGAAATTCGGTG+AGG | + | chr3.3:79234379-79234398 | None:intergenic | 45.0% |
| ! | AGGTGATGATGAAGAAGGAG+AGG | + | chr3.3:79234403-79234422 | None:intergenic | 45.0% |
| ! | CCCTTTGAAGAATTAGGAGG+TGG | - | chr3.3:79233616-79233635 | MS.gene31000:CDS | 45.0% |
| ! | CGTGGATGATGACGATACAA+CGG | - | chr3.3:79234876-79234895 | MS.gene31000:CDS | 45.0% |
| ! | CTTTGACTGATCGGTTGATG+AGG | - | chr3.3:79234082-79234101 | MS.gene31000:CDS | 45.0% |
| ! | GATGGAGAGAAATTCGGTGA+GGG | + | chr3.3:79234378-79234397 | None:intergenic | 45.0% |
| ! | GGTGATGATGAAGAAGGAGA+GGG | + | chr3.3:79234402-79234421 | None:intergenic | 45.0% |
| ! | TTCAAGGTGCACTTCTGAGA+CGG | - | chr3.3:79234563-79234582 | MS.gene31000:CDS | 45.0% |
| !!! | TCAGCGTTTTCAAGTGCTGT+AGG | + | chr3.3:79233490-79233509 | None:intergenic | 45.0% |
| ATAAGACCTGCTAGAGCTCC+TGG | + | chr3.3:79234815-79234834 | None:intergenic | 50.0% | |
| ATGCCTACTGCTATGTCCAG+AGG | + | chr3.3:79234514-79234533 | None:intergenic | 50.0% | |
| GATGAAGAAGGAGAGGGAGA+TGG | + | chr3.3:79234396-79234415 | None:intergenic | 50.0% | |
| GATGACGATACAACGGATCC+AGG | - | chr3.3:79234883-79234902 | MS.gene31000:CDS | 50.0% | |
| GGATGAGGAGGCAAACTAGA+GGG | + | chr3.3:79234303-79234322 | None:intergenic | 50.0% | |
| GTGCTGTAGGACATTCTCTG+AGG | + | chr3.3:79233477-79233496 | None:intergenic | 50.0% | |
| GTGTTCGACCCAGAGACAAA+TGG | - | chr3.3:79233440-79233459 | MS.gene31000:intron | 50.0% | |
| TCTGGGTCGAACACTTGATG+AGG | + | chr3.3:79233434-79233453 | None:intergenic | 50.0% | |
| TGCTTCAGTTTGAGCGTGTG+AGG | + | chr3.3:79233281-79233300 | None:intergenic | 50.0% | |
| TGGATGAGGAGGCAAACTAG+AGG | + | chr3.3:79234304-79234323 | None:intergenic | 50.0% | |
| ! | GAGCTCTAGCAGGTCTTATC+AGG | - | chr3.3:79234816-79234835 | MS.gene31000:CDS | 50.0% |
| !! | CATTTTCCAGGAGCTCTAGC+AGG | - | chr3.3:79234806-79234825 | MS.gene31000:CDS | 50.0% |
| !! | CTTCTGAGACGGAGAGAAGT+AGG | - | chr3.3:79234574-79234593 | MS.gene31000:CDS | 50.0% |
| !!! | CGTCGTCATTGCCATTTTCG+AGG | - | chr3.3:79234151-79234170 | MS.gene31000:CDS | 50.0% |
| ATACAACGGATCCAGGCAGC+AGG | - | chr3.3:79234890-79234909 | MS.gene31000:CDS | 55.0% | |
| GACGGAGAAGAGCCATGTGA+TGG | + | chr3.3:79234135-79234154 | None:intergenic | 55.0% | |
| GCAAAGCTCTTGCCATGGCA+GGG | - | chr3.3:79235055-79235074 | MS.gene31000:CDS | 55.0% | |
| GCCATGGCAGGGTCCATTAA+GGG | - | chr3.3:79235066-79235085 | MS.gene31000:CDS | 55.0% | |
| GTGACGAAATACCTGCTGCC+TGG | + | chr3.3:79234904-79234923 | None:intergenic | 55.0% | |
| TGAGGAGGCAAACTAGAGGG+TGG | + | chr3.3:79234300-79234319 | None:intergenic | 55.0% | |
| TGCAAAGCTCTTGCCATGGC+AGG | - | chr3.3:79235054-79235073 | MS.gene31000:CDS | 55.0% | |
| TGCCATGGCAGGGTCCATTA+AGG | - | chr3.3:79235065-79235084 | MS.gene31000:CDS | 55.0% | |
| TGGCAGGGTCCATTAAGGGA+TGG | - | chr3.3:79235070-79235089 | MS.gene31000:CDS | 55.0% | |
| ! | TCCCTTAATGGACCCTGCCA+TGG | + | chr3.3:79235070-79235089 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79233265 | 79235242 | 79233265 | ID=MS.gene31000 |
| chr3.3 | mRNA | 79233265 | 79235242 | 79233265 | ID=MS.gene31000.t1;Parent=MS.gene31000 |
| chr3.3 | exon | 79233878 | 79235242 | 79233878 | ID=MS.gene31000.t1.exon1;Parent=MS.gene31000.t1 |
| chr3.3 | CDS | 79233878 | 79235242 | 79233878 | ID=cds.MS.gene31000.t1;Parent=MS.gene31000.t1 |
| chr3.3 | exon | 79233596 | 79233777 | 79233596 | ID=MS.gene31000.t1.exon2;Parent=MS.gene31000.t1 |
| chr3.3 | CDS | 79233596 | 79233777 | 79233596 | ID=cds.MS.gene31000.t1;Parent=MS.gene31000.t1 |
| chr3.3 | exon | 79233265 | 79233322 | 79233265 | ID=MS.gene31000.t1.exon3;Parent=MS.gene31000.t1 |
| chr3.3 | CDS | 79233265 | 79233322 | 79233265 | ID=cds.MS.gene31000.t1;Parent=MS.gene31000.t1 |
| Gene Sequence |
| Protein sequence |
