AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31100.t1 MTR_1g104555 88.889 126 14 0 1 126 549 674 9.25e-79 245
MS.gene31100.t1 MTR_5g006160 55.556 126 45 3 1 125 657 772 9.16e-41 144
MS.gene31100.t1 MTR_2g067970 43.333 120 63 3 2 121 771 885 1.19e-28 109
MS.gene31100.t1 MTR_5g013070 41.667 120 66 2 2 121 678 793 1.15e-27 106
MS.gene31100.t1 MTR_2g067990 44.167 120 62 2 2 121 883 997 1.41e-27 106
MS.gene31100.t1 MTR_2g067980 44.167 120 62 2 2 121 907 1021 2.48e-27 105
MS.gene31100.t1 MTR_2g068650 43.333 120 63 2 2 121 621 735 5.83e-27 104
MS.gene31100.t1 MTR_5g013130 40.833 120 67 2 2 121 675 790 1.88e-26 103
MS.gene31100.t1 MTR_8g011370 41.667 120 66 1 2 121 688 803 1.92e-24 97.4
MS.gene31100.t1 MTR_8g011410 41.880 117 64 1 2 118 690 802 7.02e-23 93.2
MS.gene31100.t1 MTR_8g011440 38.843 121 70 1 2 122 702 818 8.22e-21 87.0
MS.gene31100.t1 MTR_4g114270 33.333 120 72 3 2 121 691 802 4.03e-20 85.1
MS.gene31100.t1 MTR_4g114280 36.975 119 69 3 4 121 720 833 6.53e-19 81.6
MS.gene31100.t1 MTR_4g114250 32.500 120 73 3 2 121 693 804 1.44e-18 80.9
MS.gene31100.t1 MTR_4g114240 38.655 119 67 3 4 121 706 819 5.89e-18 79.0
MS.gene31100.t1 MTR_8g067690 35.200 125 70 4 1 123 521 636 7.85e-18 78.6
MS.gene31100.t1 MTR_6g043510 37.398 123 66 3 2 121 656 770 1.82e-17 77.4
MS.gene31100.t1 MTR_8g067720 34.400 125 71 4 1 123 504 619 3.62e-17 76.6
MS.gene31100.t1 MTR_6g043790 38.211 123 65 4 2 121 661 775 8.08e-17 75.9
MS.gene31100.t1 MTR_7g116130 33.333 111 68 1 1 111 521 625 9.10e-17 75.5
MS.gene31100.t1 MTR_2g073250 35.537 121 71 2 2 121 651 765 9.56e-17 75.5
MS.gene31100.t1 MTR_3g107070 35.000 120 72 1 2 121 639 752 1.04e-16 75.5
MS.gene31100.t1 MTR_8g067630 33.600 125 72 4 1 123 453 568 2.11e-16 74.3
MS.gene31100.t1 MTR_1g032930 33.600 125 75 3 2 121 664 785 2.92e-16 73.9
MS.gene31100.t1 MTR_2g080100 35.537 121 67 3 4 121 618 730 4.40e-16 73.6
MS.gene31100.t1 MTR_5g077100 35.833 120 76 1 1 120 533 651 5.95e-16 73.2
MS.gene31100.t1 MTR_2g080080 34.959 123 69 3 2 121 647 761 6.91e-16 73.2
MS.gene31100.t1 MTR_7g063010 32.500 120 71 3 1 118 504 615 2.66e-15 71.2
MS.gene31100.t1 MTR_8g067930 33.871 124 71 4 2 123 506 620 3.31e-15 71.2
MS.gene31100.t1 MTR_2g008370 33.043 115 72 1 1 115 456 565 5.10e-15 70.5
MS.gene31100.t1 MTR_8g030500 28.800 125 85 1 1 121 648 772 5.74e-15 70.5
MS.gene31100.t1 MTR_4g113710 38.095 126 68 4 2 121 274 395 6.18e-15 70.1
MS.gene31100.t1 MTR_3g460810 36.937 111 63 1 1 111 492 595 7.40e-15 70.1
MS.gene31100.t1 MTR_5g033820 30.435 115 75 1 1 115 469 578 9.03e-15 69.7
MS.gene31100.t1 MTR_7g115740 33.333 123 74 4 1 123 448 562 9.05e-15 69.7
MS.gene31100.t1 MTR_7g115740 33.333 123 74 4 1 123 524 638 9.20e-15 69.7
MS.gene31100.t1 MTR_1g099400 30.973 113 72 1 2 114 689 795 1.03e-14 69.7
MS.gene31100.t1 MTR_1g012550 31.858 113 71 1 2 114 667 773 1.32e-14 69.3
MS.gene31100.t1 MTR_2g054870 33.607 122 79 1 2 121 276 397 1.69e-14 68.9
MS.gene31100.t1 MTR_1g028020 34.454 119 69 4 1 117 313 424 1.73e-14 68.9
MS.gene31100.t1 MTR_2g008360 30.435 115 76 1 1 115 460 570 2.04e-14 68.9
MS.gene31100.t1 MTR_1g097160 31.304 115 75 1 1 115 471 581 2.29e-14 68.6
MS.gene31100.t1 MTR_6g083780 36.752 117 64 4 1 115 519 627 2.64e-14 68.6
MS.gene31100.t1 MTR_2g008390 29.565 115 77 1 1 115 461 571 2.67e-14 68.6
MS.gene31100.t1 MTR_8g088760 34.146 123 73 3 2 121 456 573 3.06e-14 68.2
MS.gene31100.t1 MTR_4g093040 33.607 122 73 2 2 123 526 639 3.57e-14 68.2
MS.gene31100.t1 MTR_7g063030 30.833 120 73 3 1 118 502 613 3.70e-14 68.2
MS.gene31100.t1 MTR_7g063030 30.833 120 73 3 1 118 508 619 3.71e-14 68.2
MS.gene31100.t1 MTR_3g031610 34.188 117 67 3 2 111 675 788 3.78e-14 68.2
MS.gene31100.t1 MTR_1g029610 31.624 117 73 1 2 118 459 568 4.12e-14 67.8
MS.gene31100.t1 MTR_2g103810 33.628 113 69 1 2 114 659 765 5.12e-14 67.8
MS.gene31100.t1 MTR_4g094858 31.667 120 71 3 2 115 678 792 5.16e-14 67.8
MS.gene31100.t1 MTR_4g093040 33.607 122 73 2 2 123 444 557 5.33e-14 67.8
MS.gene31100.t1 MTR_2g073540 33.613 119 69 4 2 118 593 703 5.35e-14 67.8
MS.gene31100.t1 MTR_2g073520 33.613 119 69 4 2 118 699 809 5.38e-14 67.8
MS.gene31100.t1 MTR_3g087060 30.435 115 76 1 1 115 442 552 6.54e-14 67.4
MS.gene31100.t1 MTR_3g087060 30.435 115 76 1 1 115 453 563 6.56e-14 67.4
MS.gene31100.t1 MTR_1g027320 33.607 122 65 5 1 117 168 278 8.08e-14 66.6
MS.gene31100.t1 MTR_8g068050 33.333 123 74 2 1 123 410 524 9.68e-14 67.0
MS.gene31100.t1 MTR_8g068050 33.333 123 74 2 1 123 520 634 9.90e-14 67.0
MS.gene31100.t1 MTR_7g018200 31.304 115 74 1 1 115 469 578 1.03e-13 66.6
MS.gene31100.t1 MTR_2g089360 34.586 133 56 5 2 121 661 775 1.31e-13 66.6
MS.gene31100.t1 MTR_3g031510 34.188 117 67 3 2 111 230 343 1.41e-13 66.2
MS.gene31100.t1 MTR_3g102400 31.034 116 74 2 2 111 684 799 1.87e-13 66.2
MS.gene31100.t1 MTR_1g028100 31.933 119 72 3 1 117 255 366 2.04e-13 65.9
MS.gene31100.t1 MTR_3g031600 32.479 117 69 3 2 111 678 791 2.78e-13 65.5
MS.gene31100.t1 MTR_1g028170 32.773 119 71 3 1 117 282 393 3.00e-13 65.5
MS.gene31100.t1 MTR_8g445800 31.933 119 74 2 1 119 667 778 3.43e-13 65.5
MS.gene31100.t1 MTR_8g445800 31.933 119 74 2 1 119 720 831 3.45e-13 65.5
MS.gene31100.t1 MTR_8g445800 31.933 119 74 2 1 119 865 976 3.49e-13 65.5
MS.gene31100.t1 MTR_0049s0070 30.435 115 75 1 1 115 401 510 3.82e-13 65.1
MS.gene31100.t1 MTR_0049s0070 30.435 115 75 1 1 115 464 573 3.87e-13 65.1
MS.gene31100.t1 MTR_8g095030 31.579 114 73 2 1 114 440 548 4.08e-13 65.1
MS.gene31100.t1 MTR_2g036460 34.711 121 71 3 2 121 310 423 4.25e-13 65.1
MS.gene31100.t1 MTR_2g089440 31.298 131 63 4 2 121 434 548 4.37e-13 65.1
MS.gene31100.t1 MTR_2g089440 31.298 131 63 4 2 121 666 780 4.56e-13 65.1
MS.gene31100.t1 MTR_5g095970 31.967 122 75 2 1 121 525 639 4.94e-13 64.7
MS.gene31100.t1 MTR_2g036490 32.308 130 62 3 2 121 300 413 4.95e-13 64.7
MS.gene31100.t1 MTR_3g096555 30.508 118 76 2 2 119 470 581 9.68e-13 63.9
MS.gene31100.t1 MTR_3g096555 30.508 118 76 2 2 119 512 623 9.75e-13 63.9
MS.gene31100.t1 MTR_0280s0040 32.500 120 76 2 2 121 659 773 1.05e-12 63.9
MS.gene31100.t1 MTR_7g082110 32.812 128 66 7 1 121 702 816 1.34e-12 63.5
MS.gene31100.t1 MTR_7g082300 33.065 124 71 6 1 121 716 830 1.39e-12 63.5
MS.gene31100.t1 MTR_2g006910 33.871 124 70 3 2 118 483 601 1.62e-12 63.5
MS.gene31100.t1 MTR_2g006910 33.871 124 70 3 2 118 483 601 1.62e-12 63.5
MS.gene31100.t1 MTR_2g008380 29.565 115 77 1 1 115 452 562 1.73e-12 63.2
MS.gene31100.t1 MTR_7g082280 32.800 125 71 6 1 121 593 708 2.51e-12 62.8
MS.gene31100.t1 MTR_8g461110 29.661 118 76 2 1 118 853 963 2.85e-12 62.8
MS.gene31100.t1 MTR_7g058550 32.456 114 70 3 2 111 675 785 3.59e-12 62.4
MS.gene31100.t1 MTR_7g058530 28.448 116 72 2 2 111 676 786 3.66e-12 62.4
MS.gene31100.t1 MTR_7g082430 30.370 135 77 6 1 127 481 606 4.34e-12 62.0
MS.gene31100.t1 MTR_3g007870 31.967 122 75 2 1 121 512 626 5.24e-12 62.0
MS.gene31100.t1 MTR_2g036440 32.787 122 66 3 2 118 242 352 5.41e-12 61.6
MS.gene31100.t1 MTR_6g016495 29.565 115 76 1 1 115 467 576 6.88e-12 61.6
MS.gene31100.t1 MTR_8g090140 28.696 115 78 1 1 115 450 560 7.12e-12 61.6
MS.gene31100.t1 MTR_1g027820 31.624 117 71 3 1 115 423 532 7.41e-12 61.6
MS.gene31100.t1 MTR_7g085860 32.800 125 69 6 1 121 331 444 7.99e-12 61.2
MS.gene31100.t1 MTR_5g026510 29.134 127 77 3 1 124 469 585 8.05e-12 61.2
MS.gene31100.t1 MTR_4g093070 31.200 125 75 4 1 123 513 628 8.25e-12 61.2
MS.gene31100.t1 MTR_8g088780 33.058 121 72 2 2 118 487 602 8.59e-12 61.2
MS.gene31100.t1 MTR_1g027050 31.452 124 75 6 1 121 601 717 8.87e-12 61.2
MS.gene31100.t1 MTR_7g082400 33.600 125 70 6 1 121 250 365 8.95e-12 61.2
MS.gene31100.t1 MTR_2g072520 31.250 112 71 1 2 113 191 296 1.03e-11 60.8
MS.gene31100.t1 MTR_1g028280 34.454 119 68 6 1 117 500 610 1.35e-11 60.8
MS.gene31100.t1 MTR_1g028280 34.454 119 68 6 1 117 539 649 1.36e-11 60.8
MS.gene31100.t1 MTR_1g027140 31.452 124 75 6 1 121 598 714 1.38e-11 60.8
MS.gene31100.t1 MTR_5g033690 29.310 116 71 4 1 111 476 585 1.46e-11 60.5
MS.gene31100.t1 MTR_2g075250 27.642 123 83 1 1 123 737 853 1.83e-11 60.5
MS.gene31100.t1 MTR_2g075250 27.642 123 83 1 1 123 832 948 1.84e-11 60.5
MS.gene31100.t1 MTR_2g073600 32.773 119 70 4 2 118 829 939 2.02e-11 60.5
MS.gene31100.t1 MTR_2g073560 32.773 119 70 4 2 118 805 915 2.03e-11 60.5
MS.gene31100.t1 MTR_8g058250 29.457 129 81 3 1 127 734 854 2.16e-11 60.1
MS.gene31100.t1 MTR_8g058250 29.457 129 81 3 1 127 830 950 2.17e-11 60.1
MS.gene31100.t1 MTR_1g027540 31.148 122 68 6 1 117 270 380 2.39e-11 60.1
MS.gene31100.t1 MTR_2g075010 31.304 115 69 3 2 114 821 927 3.23e-11 59.7
MS.gene31100.t1 MTR_2g036430 31.061 132 63 3 2 122 225 339 3.37e-11 59.3
MS.gene31100.t1 MTR_2g074990 30.435 115 70 3 2 114 819 925 3.95e-11 59.3
MS.gene31100.t1 MTR_5g035910 29.167 120 75 3 1 118 511 622 5.57e-11 58.9
MS.gene31100.t1 MTR_0394s0020 27.941 136 81 6 1 128 240 366 6.56e-11 58.5
MS.gene31100.t1 MTR_2g016500 26.230 122 81 2 1 120 465 579 8.60e-11 58.5
MS.gene31100.t1 MTR_4g067230 32.407 108 67 1 1 108 687 788 9.39e-11 58.5
MS.gene31100.t1 MTR_4g044393 27.941 136 81 6 1 128 700 826 9.77e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31100.t1 AT1G34300 36.800 125 67 3 2 122 650 766 1.31e-17 78.2
MS.gene31100.t1 AT5G03140 36.585 123 76 2 1 122 537 658 4.88e-17 76.3
MS.gene31100.t1 AT4G32300 35.772 123 68 3 2 121 659 773 2.36e-16 74.3
MS.gene31100.t1 AT1G60800 29.565 115 76 1 1 115 401 510 2.10e-15 71.6
MS.gene31100.t1 AT1G60800 29.565 115 76 1 1 115 468 577 2.13e-15 71.6
MS.gene31100.t1 AT1G71830 31.304 115 75 1 1 115 469 579 3.29e-15 71.2
MS.gene31100.t1 AT1G34210 31.304 115 75 1 1 115 472 582 3.32e-15 71.2
MS.gene31100.t1 AT1G34210 31.304 115 75 1 1 115 472 582 3.32e-15 71.2
MS.gene31100.t1 AT4G33430 32.174 115 74 1 1 115 456 566 5.99e-15 70.5
MS.gene31100.t1 AT4G33430 32.174 115 74 1 1 115 503 613 6.10e-15 70.5
MS.gene31100.t1 AT3G25560 33.043 115 72 1 1 115 475 584 6.13e-15 70.5
MS.gene31100.t1 AT3G25560 33.043 115 72 1 1 115 476 585 6.13e-15 70.5
MS.gene31100.t1 AT3G25560 33.043 115 72 1 1 115 475 584 6.14e-15 70.5
MS.gene31100.t1 AT1G29730 30.508 118 77 1 1 118 805 917 2.93e-14 68.6
MS.gene31100.t1 AT1G29730 30.508 118 77 1 1 118 837 949 2.94e-14 68.6
MS.gene31100.t1 AT3G53380 35.000 120 78 0 1 120 540 659 3.73e-14 68.2
MS.gene31100.t1 AT4G00340 35.772 123 61 5 2 114 626 740 4.54e-14 67.8
MS.gene31100.t1 AT1G31420 29.268 123 80 2 2 124 471 586 4.74e-14 67.8
MS.gene31100.t1 AT1G31420 29.268 123 80 2 2 124 471 586 4.74e-14 67.8
MS.gene31100.t1 AT1G31420 29.268 123 80 2 2 124 470 585 4.78e-14 67.8
MS.gene31100.t1 AT4G00340 35.772 123 61 5 2 114 647 761 5.16e-14 67.8
MS.gene31100.t1 AT5G65240 32.479 117 71 3 1 115 451 561 5.53e-14 67.8
MS.gene31100.t1 AT5G65240 32.479 117 71 3 1 115 451 561 6.00e-14 67.4
MS.gene31100.t1 AT2G19130 32.540 126 69 3 2 121 660 775 6.03e-14 67.4
MS.gene31100.t1 AT2G13800 29.565 115 77 1 1 115 325 435 9.48e-14 67.0
MS.gene31100.t1 AT2G13800 29.565 115 77 1 1 115 325 435 9.48e-14 67.0
MS.gene31100.t1 AT3G59740 30.702 114 73 1 1 114 502 609 1.48e-13 66.2
MS.gene31100.t1 AT4G02420 30.702 114 74 1 2 115 516 624 1.51e-13 66.2
MS.gene31100.t1 AT1G53430 30.081 123 80 1 1 123 794 910 1.60e-13 66.2
MS.gene31100.t1 AT1G53430 30.081 123 80 1 1 123 835 951 1.60e-13 66.2
MS.gene31100.t1 AT1G29740 31.532 111 71 1 1 111 841 946 1.80e-13 66.2
MS.gene31100.t1 AT1G29740 31.532 111 71 1 1 111 841 946 1.81e-13 66.2
MS.gene31100.t1 AT1G70250 28.571 119 80 2 1 117 624 739 1.96e-13 66.2
MS.gene31100.t1 AT2G13800 29.565 115 77 1 1 115 442 552 2.01e-13 65.9
MS.gene31100.t1 AT2G13800 29.565 115 77 1 1 115 442 552 2.01e-13 65.9
MS.gene31100.t1 AT2G13790 29.565 115 77 1 1 115 461 571 2.02e-13 65.9
MS.gene31100.t1 AT5G24080 29.752 121 78 2 2 121 570 684 3.65e-13 65.5
MS.gene31100.t1 AT5G24080 29.752 121 78 2 2 121 570 684 3.65e-13 65.5
MS.gene31100.t1 AT5G24080 29.752 121 78 2 2 121 697 811 3.71e-13 65.5
MS.gene31100.t1 AT1G53440 29.268 123 81 1 1 123 833 949 3.87e-13 65.1
MS.gene31100.t1 AT5G55830 33.607 122 75 2 1 121 533 649 6.10e-13 64.7
MS.gene31100.t1 AT2G23950 30.435 115 75 1 1 115 462 571 8.91e-13 64.3
MS.gene31100.t1 AT4G28350 31.579 114 66 3 2 113 517 620 9.71e-13 63.9
MS.gene31100.t1 AT3G53810 33.051 118 69 3 1 115 512 622 1.44e-12 63.5
MS.gene31100.t1 AT5G10290 29.915 117 74 3 1 115 457 567 1.65e-12 63.5
MS.gene31100.t1 AT5G10290 29.915 117 74 3 1 115 457 567 1.65e-12 63.5
MS.gene31100.t1 AT4G02410 31.496 127 80 2 2 126 521 642 1.82e-12 63.2
MS.gene31100.t1 AT1G11050 34.677 124 69 3 2 118 467 585 2.19e-12 63.2
MS.gene31100.t1 AT3G55550 30.769 117 71 3 2 116 513 621 2.51e-12 62.8
MS.gene31100.t1 AT1G66980 32.558 129 71 7 1 121 952 1072 3.86e-12 62.4
MS.gene31100.t1 AT1G66980 32.558 129 71 7 1 121 969 1089 3.86e-12 62.4
MS.gene31100.t1 AT1G66980 32.558 129 71 7 1 121 996 1116 3.87e-12 62.4
MS.gene31100.t1 AT1G66980 32.558 129 71 7 1 121 998 1118 3.87e-12 62.4
MS.gene31100.t1 AT2G32800 33.071 127 73 4 1 123 309 427 4.05e-12 62.4
MS.gene31100.t1 AT5G65600 34.921 126 74 5 2 123 516 637 4.35e-12 62.4
MS.gene31100.t1 AT1G29720 30.579 121 74 4 1 119 837 949 4.44e-12 62.4
MS.gene31100.t1 AT3G14840 29.457 129 81 3 2 128 839 959 5.03e-12 62.0
MS.gene31100.t1 AT1G67520 31.298 131 79 5 2 126 670 795 5.19e-12 62.0
MS.gene31100.t1 AT1G67520 31.298 131 79 5 2 126 620 745 5.21e-12 62.0
MS.gene31100.t1 AT2G16750 28.814 118 78 2 2 119 441 552 5.22e-12 62.0
MS.gene31100.t1 AT2G16750 28.814 118 78 2 2 119 441 552 5.22e-12 62.0
MS.gene31100.t1 AT1G67520 31.298 131 79 5 2 126 663 788 6.67e-12 61.6
MS.gene31100.t1 AT1G07650 29.310 116 72 3 1 114 632 739 9.07e-12 61.2
MS.gene31100.t1 AT1G07650 29.310 116 72 3 1 114 819 926 9.24e-12 61.2
MS.gene31100.t1 AT1G07650 29.310 116 72 3 1 114 845 952 9.26e-12 61.2
MS.gene31100.t1 AT1G07650 29.310 116 72 3 1 114 851 958 9.26e-12 61.2
MS.gene31100.t1 AT1G67520 31.061 132 80 5 1 126 425 551 9.26e-12 61.2
MS.gene31100.t1 AT1G67520 31.061 132 80 5 1 126 454 580 9.42e-12 61.2
MS.gene31100.t1 AT1G67520 31.061 132 80 5 1 126 454 580 9.42e-12 61.2
MS.gene31100.t1 AT4G18250 35.593 118 68 5 1 114 521 634 1.42e-11 60.8
MS.gene31100.t1 AT1G14370 33.333 123 71 4 2 121 261 375 1.51e-11 60.5
MS.gene31100.t1 AT4G11480 28.182 110 74 3 2 111 488 592 2.65e-11 60.1
MS.gene31100.t1 AT4G11480 28.182 110 74 3 2 111 491 595 2.65e-11 60.1
MS.gene31100.t1 AT4G11480 28.182 110 74 3 2 111 496 600 2.65e-11 60.1
MS.gene31100.t1 AT4G35030 33.636 110 67 2 2 111 132 235 3.13e-11 59.3
MS.gene31100.t1 AT5G38260 30.159 126 70 6 1 118 485 600 4.12e-11 59.3
MS.gene31100.t1 AT5G63940 29.661 118 77 2 2 119 529 640 4.42e-11 59.3
MS.gene31100.t1 AT4G35030 33.636 110 67 2 2 111 273 376 4.69e-11 59.3
MS.gene31100.t1 AT4G35030 33.636 110 67 2 2 111 273 376 4.69e-11 59.3
MS.gene31100.t1 AT4G35030 33.636 110 67 2 2 111 273 376 4.69e-11 59.3
MS.gene31100.t1 AT4G35030 33.636 110 67 2 2 111 273 376 4.69e-11 59.3
MS.gene31100.t1 AT4G30520 29.565 115 76 1 1 115 466 575 5.26e-11 58.9
MS.gene31100.t1 AT5G38280 30.233 129 80 5 2 124 497 621 7.34e-11 58.5
MS.gene31100.t1 AT5G38280 30.233 129 80 5 2 124 497 621 7.35e-11 58.5
MS.gene31100.t1 AT3G13690 31.034 116 70 3 2 115 577 684 7.88e-11 58.5
MS.gene31100.t1 AT3G13690 31.034 116 70 3 2 115 577 684 7.88e-11 58.5
MS.gene31100.t1 AT3G13690 31.034 116 70 3 2 115 577 684 7.88e-11 58.5
MS.gene31100.t1 AT1G21590 26.446 121 75 3 2 118 536 646 8.98e-11 58.5
MS.gene31100.t1 AT3G59750 30.088 113 73 1 2 114 470 576 9.01e-11 58.5
MS.gene31100.t1 AT1G21590 26.446 121 75 3 2 118 576 686 9.03e-11 58.5

Find 29 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATAGATGGCCTAATAAT+TGG 0.179313 2.4:+6006412 None:intergenic
TTATAGATTGGGTTCTATAT+TGG 0.218702 2.4:-6006546 MS.gene31100:CDS
TATAGATTGGGTTCTATATT+GGG 0.279264 2.4:-6006545 MS.gene31100:CDS
GATGGCCTAATAATTGGATT+AGG 0.304889 2.4:+6006418 None:intergenic
TGTGCCCTAATCCAATTATT+AGG 0.308361 2.4:-6006423 MS.gene31100:CDS
TGCAACACCTTTGCAATAGA+TGG 0.340385 2.4:+6006400 None:intergenic
ATGACATGATACTTATAGAT+TGG 0.369608 2.4:-6006558 MS.gene31100:CDS
AGTGTTCCACTATTGTTTGA+TGG 0.394571 2.4:-6006352 MS.gene31100:CDS
AAGTTGTTAATGATTTCATT+AGG 0.396201 2.4:-6006480 MS.gene31100:CDS
TAGAGGGACAATGGGATGTT+TGG 0.404956 2.4:-6006716 None:intergenic
TAGGTTTGATAGAATGACTA+TGG 0.416702 2.4:-6006461 MS.gene31100:CDS
ATGGCCTAATAATTGGATTA+GGG 0.442397 2.4:+6006419 None:intergenic
TGACATGATACTTATAGATT+GGG 0.452945 2.4:-6006557 MS.gene31100:CDS
GGTTCTATATTGGGCAAAAG+AGG 0.465154 2.4:-6006536 MS.gene31100:CDS
CTAACTTCAAAATCTCCTTC+CGG 0.480591 2.4:+6006373 None:intergenic
TGCAAAGGTGTTGCAGATGC+CGG 0.487574 2.4:-6006392 MS.gene31100:CDS
TTTGATAGAATGACTATGGT+TGG 0.491359 2.4:-6006457 MS.gene31100:CDS
GAATTGCATCAAGTTGAAGA+TGG 0.493224 2.4:-6006595 MS.gene31100:CDS
TGCACCTATCACTGCAAAAG+TGG 0.498118 2.4:-6006674 MS.gene31100:CDS
AAAGTGGATATCTACAGCTT+TGG 0.498218 2.4:-6006658 MS.gene31100:CDS
GTTCTATATTGGGCAAAAGA+GGG 0.512150 2.4:-6006535 MS.gene31100:CDS
CATTAACAACTTCAACATCA+TGG 0.537170 2.4:+6006491 None:intergenic
CAAGTTGAAGATGGAACAGA+AGG 0.575586 2.4:-6006586 MS.gene31100:CDS
TGGGATGTTTGGCACCAGAA+TGG 0.578599 2.4:-6006705 MS.gene31100:CDS
TATTAGGCCATCTATTGCAA+AGG 0.594426 2.4:-6006407 MS.gene31100:CDS
TTCTATATTGGGCAAAAGAG+GGG 0.600711 2.4:-6006534 MS.gene31100:CDS
GTTGAAGATGGAACAGAAGG+TGG 0.634859 2.4:-6006583 MS.gene31100:CDS
AAGGTGTTGCAGATGCCGGA+AGG 0.637865 2.4:-6006388 MS.gene31100:CDS
GAATGACTATGGTTGGACTG+TGG 0.738227 2.4:-6006450 MS.gene31100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTGTTAATGATTTCATT+AGG - chr2.4:6006565-6006584 MS.gene31100:CDS 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG - chr2.4:6006421-6006440 MS.gene31100:CDS 20.0%
! ATGACATGATACTTATAGAT+TGG - chr2.4:6006487-6006506 MS.gene31100:CDS 25.0%
! TATAGATTGGGTTCTATATT+GGG - chr2.4:6006500-6006519 MS.gene31100:CDS 25.0%
! TGACATGATACTTATAGATT+GGG - chr2.4:6006488-6006507 MS.gene31100:CDS 25.0%
! TTATAGATTGGGTTCTATAT+TGG - chr2.4:6006499-6006518 MS.gene31100:CDS 25.0%
!! ATTTTTCCATCAAACAATAG+TGG + chr2.4:6006702-6006721 None:intergenic 25.0%
ATGGCCTAATAATTGGATTA+GGG + chr2.4:6006629-6006648 None:intergenic 30.0%
CATTAACAACTTCAACATCA+TGG + chr2.4:6006557-6006576 None:intergenic 30.0%
TAGGTTTGATAGAATGACTA+TGG - chr2.4:6006584-6006603 MS.gene31100:CDS 30.0%
TTTGATAGAATGACTATGGT+TGG - chr2.4:6006588-6006607 MS.gene31100:CDS 30.0%
AAAGTGGATATCTACAGCTT+TGG - chr2.4:6006387-6006406 MS.gene31100:CDS 35.0%
AGTGTTCCACTATTGTTTGA+TGG - chr2.4:6006693-6006712 MS.gene31100:CDS 35.0%
CTAACTTCAAAATCTCCTTC+CGG + chr2.4:6006675-6006694 None:intergenic 35.0%
GATGGCCTAATAATTGGATT+AGG + chr2.4:6006630-6006649 None:intergenic 35.0%
GCAATAGATGGCCTAATAAT+TGG + chr2.4:6006636-6006655 None:intergenic 35.0%
GTTCTATATTGGGCAAAAGA+GGG - chr2.4:6006510-6006529 MS.gene31100:CDS 35.0%
TATTAGGCCATCTATTGCAA+AGG - chr2.4:6006638-6006657 MS.gene31100:CDS 35.0%
TGTGCCCTAATCCAATTATT+AGG - chr2.4:6006622-6006641 MS.gene31100:CDS 35.0%
TTCTATATTGGGCAAAAGAG+GGG - chr2.4:6006511-6006530 MS.gene31100:CDS 35.0%
!! ATATCCACTTTTGCAGTGAT+AGG + chr2.4:6006378-6006397 None:intergenic 35.0%
!! GAATTGCATCAAGTTGAAGA+TGG - chr2.4:6006450-6006469 MS.gene31100:CDS 35.0%
GGTTCTATATTGGGCAAAAG+AGG - chr2.4:6006509-6006528 MS.gene31100:CDS 40.0%
TGCAACACCTTTGCAATAGA+TGG + chr2.4:6006648-6006667 None:intergenic 40.0%
! CAAGTTGAAGATGGAACAGA+AGG - chr2.4:6006459-6006478 MS.gene31100:CDS 40.0%
GAATGACTATGGTTGGACTG+TGG - chr2.4:6006595-6006614 MS.gene31100:CDS 45.0%
GTTGAAGATGGAACAGAAGG+TGG - chr2.4:6006462-6006481 MS.gene31100:CDS 45.0%
TGCACCTATCACTGCAAAAG+TGG - chr2.4:6006371-6006390 MS.gene31100:CDS 45.0%
!! GGTGCATTTTTGAGCCATTC+TGG + chr2.4:6006357-6006376 None:intergenic 45.0%
TGGGATGTTTGGCACCAGAA+TGG - chr2.4:6006340-6006359 MS.gene31100:CDS 50.0%
!! TGCAAAGGTGTTGCAGATGC+CGG - chr2.4:6006653-6006672 MS.gene31100:CDS 50.0%
!! AAGGTGTTGCAGATGCCGGA+AGG - chr2.4:6006657-6006676 MS.gene31100:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 6006339 6006728 6006339 ID=MS.gene31100
chr2.4 mRNA 6006339 6006728 6006339 ID=MS.gene31100.t1;Parent=MS.gene31100
chr2.4 exon 6006339 6006728 6006339 ID=MS.gene31100.t1.exon1;Parent=MS.gene31100.t1
chr2.4 CDS 6006339 6006728 6006339 ID=cds.MS.gene31100.t1;Parent=MS.gene31100.t1
Gene Sequence

>MS.gene31100

ATGGGATGTTTGGCACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAGTGGATATCTACAGCTTTGGTGTCATGTTACTTGAAATCTTATTTTGTAGAAGGCACATTGAATTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTAAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGATAGAATGACTATGGTTGGACTGTGGTGCTTGTGCCCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGTTGCAGATGCCGGAAGGAGATTTTGAAGTTAGTGTTCCACTATTGTTTGATGGAAAAATTTTGTAA
Protein sequence

>MS.gene31100.t1

MGCLAPEWLKNAPITAKVDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFDRMTMVGLWCLCPNPIIRPSIAKVLQMPEGDFEVSVPLLFDGKIL