AlfalfaGEDB | MS.gene31100

M. sativa cultivar XinJiangDaYe / MS.gene31100

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31100.t1	RHN82037.1	88.9	126	14	0	1	126	364	489	2.80E-60	241.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31100.t1	Q39202	39.2	120	64	1	2	121	698	808	5.8e-22	105.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31100.t1	A0A072W0U2	88.9	126	14	0	1	126	549	674	2.0e-60	241.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene054271	MS.gene31100	0.925928	9.43E-91	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31100.t1	MTR_1g104555	88.889	126	14	0	1	126	549	674	9.25e-79	245
MS.gene31100.t1	MTR_5g006160	55.556	126	45	3	1	125	657	772	9.16e-41	144
MS.gene31100.t1	MTR_2g067970	43.333	120	63	3	2	121	771	885	1.19e-28	109
MS.gene31100.t1	MTR_5g013070	41.667	120	66	2	2	121	678	793	1.15e-27	106
MS.gene31100.t1	MTR_2g067990	44.167	120	62	2	2	121	883	997	1.41e-27	106
MS.gene31100.t1	MTR_2g067980	44.167	120	62	2	2	121	907	1021	2.48e-27	105
MS.gene31100.t1	MTR_2g068650	43.333	120	63	2	2	121	621	735	5.83e-27	104
MS.gene31100.t1	MTR_5g013130	40.833	120	67	2	2	121	675	790	1.88e-26	103
MS.gene31100.t1	MTR_8g011370	41.667	120	66	1	2	121	688	803	1.92e-24	97.4
MS.gene31100.t1	MTR_8g011410	41.880	117	64	1	2	118	690	802	7.02e-23	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31100.t1	AT1G34300	36.800	125	67	3	2	122	650	766	1.31e-17	78.2
MS.gene31100.t1	AT5G03140	36.585	123	76	2	1	122	537	658	4.88e-17	76.3
MS.gene31100.t1	AT4G32300	35.772	123	68	3	2	121	659	773	2.36e-16	74.3
MS.gene31100.t1	AT1G60800	29.565	115	76	1	1	115	401	510	2.10e-15	71.6
MS.gene31100.t1	AT1G60800	29.565	115	76	1	1	115	468	577	2.13e-15	71.6
MS.gene31100.t1	AT1G71830	31.304	115	75	1	1	115	469	579	3.29e-15	71.2
MS.gene31100.t1	AT1G34210	31.304	115	75	1	1	115	472	582	3.32e-15	71.2
MS.gene31100.t1	AT1G34210	31.304	115	75	1	1	115	472	582	3.32e-15	71.2
MS.gene31100.t1	AT4G33430	32.174	115	74	1	1	115	456	566	5.99e-15	70.5
MS.gene31100.t1	AT4G33430	32.174	115	74	1	1	115	503	613	6.10e-15	70.5

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Find 29 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGATATCTACAGCTT+TGG	0.498218	2.4:-6006658	MS.gene31100:CDS
AAGGTGTTGCAGATGCCGGA+AGG	0.637865	2.4:-6006388	MS.gene31100:CDS
AAGTTGTTAATGATTTCATT+AGG	0.396201	2.4:-6006480	MS.gene31100:CDS
AGTGTTCCACTATTGTTTGA+TGG	0.394571	2.4:-6006352	MS.gene31100:CDS
ATGACATGATACTTATAGAT+TGG	0.369608	2.4:-6006558	MS.gene31100:CDS
ATGGCCTAATAATTGGATTA+GGG	0.442397	2.4:+6006419	None:intergenic
CAAGTTGAAGATGGAACAGA+AGG	0.575586	2.4:-6006586	MS.gene31100:CDS
CATTAACAACTTCAACATCA+TGG	0.537170	2.4:+6006491	None:intergenic
CTAACTTCAAAATCTCCTTC+CGG	0.480591	2.4:+6006373	None:intergenic
GAATGACTATGGTTGGACTG+TGG	0.738227	2.4:-6006450	MS.gene31100:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGCCTAATAATTGGATTA+GGG	+	chr2.4:6006629-6006648	None:intergenic	30.0%
CATTAACAACTTCAACATCA+TGG	+	chr2.4:6006557-6006576	None:intergenic	30.0%
TAGGTTTGATAGAATGACTA+TGG	-	chr2.4:6006584-6006603	MS.gene31100:CDS	30.0%
TTTGATAGAATGACTATGGT+TGG	-	chr2.4:6006588-6006607	MS.gene31100:CDS	30.0%
AAAGTGGATATCTACAGCTT+TGG	-	chr2.4:6006387-6006406	MS.gene31100:CDS	35.0%
AGTGTTCCACTATTGTTTGA+TGG	-	chr2.4:6006693-6006712	MS.gene31100:CDS	35.0%
CTAACTTCAAAATCTCCTTC+CGG	+	chr2.4:6006675-6006694	None:intergenic	35.0%
GATGGCCTAATAATTGGATT+AGG	+	chr2.4:6006630-6006649	None:intergenic	35.0%
GCAATAGATGGCCTAATAAT+TGG	+	chr2.4:6006636-6006655	None:intergenic	35.0%
GTTCTATATTGGGCAAAAGA+GGG	-	chr2.4:6006510-6006529	MS.gene31100:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	6006339	6006728	6006339	ID=MS.gene31100
chr2.4	mRNA	6006339	6006728	6006339	ID=MS.gene31100.t1;Parent=MS.gene31100
chr2.4	exon	6006339	6006728	6006339	ID=MS.gene31100.t1.exon1;Parent=MS.gene31100.t1
chr2.4	CDS	6006339	6006728	6006339	ID=cds.MS.gene31100.t1;Parent=MS.gene31100.t1

Gene Sequence

>MS.gene31100

ATGGGATGTTTGGCACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAGTGGATATCTACAGCTTTGGTGTCATGTTACTTGAAATCTTATTTTGTAGAAGGCACATTGAATTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTAAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGATAGAATGACTATGGTTGGACTGTGGTGCTTGTGCCCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGTTGCAGATGCCGGAAGGAGATTTTGAAGTTAGTGTTCCACTATTGTTTGATGGAAAAATTTTGTAA

Protein sequence

>MS.gene31100.t1

MGCLAPEWLKNAPITAKVDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFDRMTMVGLWCLCPNPIIRPSIAKVLQMPEGDFEVSVPLLFDGKIL