Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31922.t1 | XP_013457028.1 | 87.6 | 322 | 38 | 1 | 1 | 320 | 55 | 376 | 4.40E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31922.t1 | A0A072UMP5 | 87.6 | 322 | 38 | 1 | 1 | 320 | 55 | 376 | 3.2e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051946 | MS.gene31922 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene31922 | 0.810108 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31922.t1 | MTR_4g088760 | 90.683 | 322 | 28 | 1 | 1 | 320 | 55 | 376 | 0.0 | 615 |
| MS.gene31922.t1 | MTR_4g088770 | 86.420 | 324 | 40 | 3 | 1 | 320 | 1 | 324 | 0.0 | 572 |
| MS.gene31922.t1 | MTR_2g013780 | 56.173 | 324 | 131 | 8 | 1 | 320 | 1 | 317 | 7.17e-121 | 350 |
| MS.gene31922.t1 | MTR_2g013880 | 48.718 | 312 | 148 | 6 | 6 | 314 | 10 | 312 | 1.39e-100 | 298 |
| MS.gene31922.t1 | MTR_4g078310 | 53.975 | 239 | 98 | 6 | 85 | 320 | 61 | 290 | 2.62e-82 | 251 |
| MS.gene31922.t1 | MTR_5g008720 | 32.479 | 234 | 141 | 5 | 66 | 287 | 12 | 240 | 3.54e-42 | 146 |
| MS.gene31922.t1 | MTR_4g132963 | 35.088 | 171 | 91 | 2 | 107 | 277 | 90 | 240 | 2.76e-31 | 119 |
| MS.gene31922.t1 | MTR_4g132940 | 35.088 | 171 | 91 | 2 | 107 | 277 | 90 | 240 | 2.76e-31 | 119 |
| MS.gene31922.t1 | MTR_7g083080 | 32.203 | 177 | 113 | 3 | 120 | 295 | 110 | 280 | 1.19e-30 | 118 |
| MS.gene31922.t1 | MTR_4g132970 | 35.294 | 170 | 90 | 3 | 108 | 277 | 112 | 261 | 1.76e-30 | 117 |
| MS.gene31922.t1 | MTR_1g041155 | 36.220 | 127 | 75 | 2 | 146 | 272 | 153 | 273 | 3.16e-29 | 115 |
| MS.gene31922.t1 | MTR_8g012240 | 36.090 | 133 | 84 | 1 | 146 | 277 | 131 | 263 | 1.72e-28 | 112 |
| MS.gene31922.t1 | MTR_2g025520 | 35.294 | 153 | 90 | 3 | 146 | 295 | 134 | 280 | 2.35e-27 | 109 |
| MS.gene31922.t1 | MTR_7g053310 | 37.594 | 133 | 81 | 2 | 146 | 277 | 120 | 251 | 1.26e-26 | 106 |
| MS.gene31922.t1 | MTR_1g076500 | 38.017 | 121 | 69 | 2 | 150 | 270 | 179 | 293 | 2.63e-26 | 107 |
| MS.gene31922.t1 | MTR_1g070970 | 26.275 | 255 | 153 | 7 | 75 | 313 | 110 | 345 | 3.87e-26 | 106 |
| MS.gene31922.t1 | MTR_7g095960 | 36.667 | 120 | 70 | 1 | 158 | 277 | 172 | 285 | 2.33e-25 | 104 |
| MS.gene31922.t1 | MTR_8g093440 | 29.787 | 141 | 96 | 2 | 148 | 285 | 22 | 162 | 6.72e-25 | 100 |
| MS.gene31922.t1 | MTR_8g093440 | 32.258 | 124 | 83 | 1 | 148 | 270 | 84 | 207 | 1.50e-24 | 100 |
| MS.gene31922.t1 | MTR_5g008720 | 26.752 | 157 | 100 | 4 | 66 | 212 | 12 | 163 | 1.71e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31922.t1 | AT4G32480 | 43.509 | 285 | 143 | 4 | 36 | 320 | 21 | 287 | 4.47e-79 | 243 |
| MS.gene31922.t1 | AT2G20670 | 46.186 | 236 | 122 | 4 | 88 | 320 | 61 | 294 | 6.29e-73 | 227 |
| MS.gene31922.t1 | AT3G07350 | 40.541 | 148 | 87 | 1 | 137 | 283 | 126 | 273 | 9.03e-38 | 136 |
| MS.gene31922.t1 | AT4G14620 | 34.000 | 200 | 106 | 4 | 79 | 277 | 94 | 268 | 1.31e-32 | 124 |
| MS.gene31922.t1 | AT3G25240 | 30.476 | 210 | 139 | 3 | 75 | 277 | 38 | 247 | 1.41e-30 | 117 |
| MS.gene31922.t1 | AT2G39650 | 28.421 | 190 | 128 | 2 | 87 | 276 | 59 | 240 | 3.68e-30 | 116 |
| MS.gene31922.t1 | AT2G39650 | 29.609 | 179 | 121 | 1 | 98 | 276 | 5 | 178 | 4.91e-30 | 114 |
| MS.gene31922.t1 | AT2G38820 | 35.484 | 124 | 74 | 2 | 147 | 270 | 160 | 277 | 2.69e-28 | 111 |
| MS.gene31922.t1 | AT3G22970 | 36.719 | 128 | 75 | 1 | 150 | 277 | 61 | 182 | 5.10e-28 | 109 |
| MS.gene31922.t1 | AT3G22970 | 37.302 | 126 | 73 | 1 | 150 | 275 | 172 | 291 | 6.02e-27 | 109 |
| MS.gene31922.t1 | AT1G62420 | 31.655 | 139 | 88 | 2 | 148 | 284 | 110 | 243 | 1.90e-24 | 100 |
| MS.gene31922.t1 | AT1G12030 | 32.061 | 131 | 82 | 2 | 148 | 277 | 112 | 236 | 1.47e-23 | 98.6 |
| MS.gene31922.t1 | AT3G54550 | 30.070 | 143 | 90 | 2 | 147 | 285 | 145 | 281 | 2.61e-23 | 97.8 |
| MS.gene31922.t1 | AT1G77160 | 29.412 | 136 | 84 | 2 | 147 | 270 | 26 | 161 | 1.62e-19 | 85.5 |
| MS.gene31922.t1 | AT1G77160 | 29.412 | 136 | 84 | 2 | 147 | 270 | 81 | 216 | 2.55e-19 | 86.3 |
| MS.gene31922.t1 | AT1G77145 | 29.412 | 136 | 84 | 2 | 147 | 270 | 76 | 211 | 5.51e-19 | 85.1 |
| MS.gene31922.t1 | AT1G77145 | 34.343 | 99 | 61 | 1 | 176 | 270 | 56 | 154 | 9.61e-16 | 75.1 |
Find 53 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAAGAGAAAGGAGATATT+AGG | 0.188794 | 4.1:+21106900 | MS.gene31922:CDS |
| AATGGTTAGGTCCATTTAAA+AGG | 0.208758 | 4.1:+21107137 | MS.gene31922:CDS |
| GTGCCATTTGTAATACTAAA+TGG | 0.269606 | 4.1:+21106214 | MS.gene31922:CDS |
| TTTAACAAATTCACTTTCAT+TGG | 0.286998 | 4.1:+21107165 | MS.gene31922:CDS |
| GATGCCTTTGGCTTCTGCTT+TGG | 0.308657 | 4.1:-21107211 | None:intergenic |
| ATAAATACATGCAAGCTAAA+TGG | 0.328450 | 4.1:+21107119 | MS.gene31922:CDS |
| GATGATTGTGATGTGGGTTT+TGG | 0.352300 | 4.1:+21105565 | MS.gene31922:CDS |
| CAACAGAACTTGTTCTGTAT+AGG | 0.353289 | 4.1:-21106035 | None:intergenic |
| TTAACAGCAGTATGCACATT+AGG | 0.362716 | 4.1:-21107265 | None:intergenic |
| CAAAGAGAAAGGAGATATTA+GGG | 0.363806 | 4.1:+21106901 | MS.gene31922:CDS |
| CCTCTATGTCCCGTGTTACT+AGG | 0.364191 | 4.1:+21105449 | MS.gene31922:CDS |
| GTCTCTAGCCAGCTTCAAAA+TGG | 0.376095 | 4.1:+21106180 | MS.gene31922:CDS |
| ACGGTTAACATTGATGCCTT+TGG | 0.384691 | 4.1:-21107223 | None:intergenic |
| CATAATCAAGATTATGTGTA+TGG | 0.427742 | 4.1:+21107042 | MS.gene31922:CDS |
| TTTCTTGATGATTGTGATGT+GGG | 0.428946 | 4.1:+21105559 | MS.gene31922:CDS |
| TTAACAAATTCACTTTCATT+GGG | 0.435046 | 4.1:+21107166 | MS.gene31922:CDS |
| TGAAGGTAACAATGATGAAA+AGG | 0.447535 | 4.1:+21105675 | MS.gene31922:CDS |
| CTTTCGAGCACAATTTGAGA+TGG | 0.476688 | 4.1:+21106940 | MS.gene31922:CDS |
| AATTTACATAATCTTCCATC+AGG | 0.482120 | 4.1:+21106240 | MS.gene31922:CDS |
| TGTCCATTTAGTATTACAAA+TGG | 0.482896 | 4.1:-21106217 | None:intergenic |
| GATCAATTACCTGCAAAAGC+TGG | 0.486219 | 4.1:-21105723 | None:intergenic |
| AAAACAATGTCGACATGAGC+TGG | 0.499730 | 4.1:-21106148 | None:intergenic |
| GTTTCATCATGATAATCATA+TGG | 0.507505 | 4.1:+21105609 | MS.gene31922:CDS |
| GTTACTAGGTATTTGCCTGT+TGG | 0.508009 | 4.1:+21105463 | MS.gene31922:CDS |
| TACATGCAAGCTAAATGGTT+AGG | 0.510493 | 4.1:+21107124 | MS.gene31922:CDS |
| TTTCGAGCACAATTTGAGAT+GGG | 0.513578 | 4.1:+21106941 | MS.gene31922:CDS |
| GTTCTGTTGAAATAAGCATA+AGG | 0.516383 | 4.1:+21106049 | MS.gene31922:CDS |
| TCATGATAATCATATGGAGT+TGG | 0.523947 | 4.1:+21105615 | MS.gene31922:CDS |
| ATTTCTTGATGATTGTGATG+TGG | 0.528604 | 4.1:+21105558 | MS.gene31922:CDS |
| AATTCCCTACGAAAACCAAC+AGG | 0.540238 | 4.1:-21105478 | None:intergenic |
| TATAATACAAGCAAAGAGAA+AGG | 0.545101 | 4.1:+21106890 | MS.gene31922:CDS |
| TTACCTGCAAAAGCTGGAGT+TGG | 0.546418 | 4.1:-21105717 | None:intergenic |
| AAACTGCCTGAGGTTTATGT+AGG | 0.548204 | 4.1:+21106998 | MS.gene31922:CDS |
| AGAACTTGTTCTGTATAGGT+TGG | 0.552925 | 4.1:-21106031 | None:intergenic |
| CAATATGCAGACACAAGTCT+TGG | 0.570833 | 4.1:+21105520 | MS.gene31922:CDS |
| AAATGTGAGAGGGTTAATGA+AGG | 0.598347 | 4.1:+21105658 | MS.gene31922:CDS |
| CAGGCAAATACCTAGTAACA+CGG | 0.599782 | 4.1:-21105459 | None:intergenic |
| TCTAGCCAGCTTCAAAATGG+TGG | 0.603969 | 4.1:+21106183 | MS.gene31922:CDS |
| AAATTGGAGTGCATTTGCAG+TGG | 0.605257 | 4.1:+21106111 | MS.gene31922:CDS |
| ACAAAATGCACATGGGACCA+TGG | 0.611544 | 4.1:+21107089 | MS.gene31922:CDS |
| AGATGATGATAAATGTGAGA+GGG | 0.614187 | 4.1:+21105648 | MS.gene31922:CDS |
| AATATTCTCTAATAAATCAA+CGG | 0.615399 | 4.1:-21107242 | None:intergenic |
| AAGATGATGATAAATGTGAG+AGG | 0.616437 | 4.1:+21105647 | MS.gene31922:CDS |
| TTTCATTGGGATATTCTGAG+AGG | 0.630945 | 4.1:+21107179 | MS.gene31922:CDS |
| CAGGCAGTTTCCTCACAAGA+CGG | 0.640039 | 4.1:-21106985 | None:intergenic |
| CCTAGTAACACGGGACATAG+AGG | 0.641395 | 4.1:-21105449 | None:intergenic |
| TAGTCCAAAGCAGAAGCCAA+AGG | 0.641419 | 4.1:+21107207 | MS.gene31922:CDS |
| GAAAGAAAACAAAATGCACA+TGG | 0.645963 | 4.1:+21107081 | MS.gene31922:CDS |
| AAGACTATAACCGTCTTGTG+AGG | 0.648618 | 4.1:+21106975 | MS.gene31922:CDS |
| TCTTGTGAGGAAACTGCCTG+AGG | 0.665039 | 4.1:+21106988 | MS.gene31922:CDS |
| AAAGAAAACAAAATGCACAT+GGG | 0.675749 | 4.1:+21107082 | MS.gene31922:CDS |
| TGCATTTGCAGTGGACAGAG+TGG | 0.676752 | 4.1:+21106120 | MS.gene31922:CDS |
| AGGCAAATACCTAGTAACAC+GGG | 0.687681 | 4.1:-21105458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTATAACAATTCA+AGG | - | chr4.1:21105832-21105851 | None:intergenic | 10.0% |
| !!! | ATTAGCTATTTTAATAATAA+TGG | + | chr4.1:21106499-21106518 | MS.gene31922:intron | 10.0% |
| !!! | TATTTTAATAATAATGGATT+AGG | + | chr4.1:21106505-21106524 | MS.gene31922:intron | 10.0% |
| !!! | TTTTTATAATCTATAACAAA+AGG | + | chr4.1:21106751-21106770 | MS.gene31922:intron | 10.0% |
| !! | AAATATAGATCATAAATCAA+TGG | - | chr4.1:21105748-21105767 | None:intergenic | 15.0% |
| !! | AATATTCTCTAATAAATCAA+CGG | - | chr4.1:21107245-21107264 | None:intergenic | 15.0% |
| !! | ATTATAATAGTGTAATTGTT+AGG | - | chr4.1:21106837-21106856 | None:intergenic | 15.0% |
| !!! | ATGAAAAGGATAAATTTTTT+TGG | + | chr4.1:21105689-21105708 | MS.gene31922:CDS | 15.0% |
| !!! | CTATTTAATTTCAAAATGTA+AGG | - | chr4.1:21106778-21106797 | None:intergenic | 15.0% |
| !!! | TATATTTTTTCAAAAGTAAC+AGG | + | chr4.1:21106541-21106560 | MS.gene31922:intron | 15.0% |
| !!! | TGAAAAGGATAAATTTTTTT+GGG | + | chr4.1:21105690-21105709 | MS.gene31922:CDS | 15.0% |
| !! | AAAAATAAATGGATCGAAAT+TGG | + | chr4.1:21106095-21106114 | MS.gene31922:CDS | 20.0% |
| !! | AATCAAGAGGAAAAAATTTA+GGG | + | chr4.1:21106630-21106649 | MS.gene31922:intron | 20.0% |
| !! | AATTAAATCAAATTACCTGA+TGG | - | chr4.1:21106258-21106277 | None:intergenic | 20.0% |
| !! | GAAGCAATTGAAAAAATAAA+TGG | + | chr4.1:21106084-21106103 | MS.gene31922:CDS | 20.0% |
| !! | TACACTATTATAATTATGCA+GGG | + | chr4.1:21106843-21106862 | MS.gene31922:intron | 20.0% |
| !! | TTAACAAATTCACTTTCATT+GGG | + | chr4.1:21107166-21107185 | MS.gene31922:CDS | 20.0% |
| !! | TTACACTATTATAATTATGC+AGG | + | chr4.1:21106842-21106861 | MS.gene31922:intron | 20.0% |
| !! | TTTAACAAATTCACTTTCAT+TGG | + | chr4.1:21107165-21107184 | MS.gene31922:CDS | 20.0% |
| !! | TTTACAACTTCATGATAAAA+AGG | + | chr4.1:21105874-21105893 | MS.gene31922:intron | 20.0% |
| !!! | ATAATAATGGATTAGGTATT+AGG | + | chr4.1:21106512-21106531 | MS.gene31922:intron | 20.0% |
| !!! | ATATTAAGTTGATCACAAAA+AGG | - | chr4.1:21106720-21106739 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCATTTTTTGAGA+CGG | + | chr4.1:21106346-21106365 | MS.gene31922:intron | 20.0% |
| !!! | GAGTAACTTTTTTTAATAAG+AGG | - | chr4.1:21106568-21106587 | None:intergenic | 20.0% |
| !!! | TCTAAGATGTTATGTTTTTT+TGG | + | chr4.1:21106586-21106605 | MS.gene31922:intron | 20.0% |
| !!! | TTAGGGTTTTTTTTTTGAAA+GGG | - | chr4.1:21106437-21106456 | None:intergenic | 20.0% |
| !!! | TTATTAGCTTTATTTTTGAG+AGG | + | chr4.1:21105969-21105988 | MS.gene31922:intron | 20.0% |
| !!! | TTTTTTGAAAGGGAATTTTA+AGG | - | chr4.1:21106427-21106446 | None:intergenic | 20.0% |
| ! | AAAGAAAACAAAATGCACAT+GGG | + | chr4.1:21107082-21107101 | MS.gene31922:CDS | 25.0% |
| ! | AATTTACATAATCTTCCATC+AGG | + | chr4.1:21106240-21106259 | MS.gene31922:CDS | 25.0% |
| ! | ACAAGACAACTAAAACTTAT+GGG | + | chr4.1:21106661-21106680 | MS.gene31922:intron | 25.0% |
| ! | ACACTATTATAATTATGCAG+GGG | + | chr4.1:21106844-21106863 | MS.gene31922:intron | 25.0% |
| ! | AGGTTAAAATATATCATGTG+AGG | - | chr4.1:21106407-21106426 | None:intergenic | 25.0% |
| ! | ATAAATACATGCAAGCTAAA+TGG | + | chr4.1:21107119-21107138 | MS.gene31922:CDS | 25.0% |
| ! | CAATCAAGAGGAAAAAATTT+AGG | + | chr4.1:21106629-21106648 | MS.gene31922:intron | 25.0% |
| ! | CATAATCAAGATTATGTGTA+TGG | + | chr4.1:21107042-21107061 | MS.gene31922:CDS | 25.0% |
| ! | GCACTAAATCAAAATCAATT+TGG | - | chr4.1:21106008-21106027 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAATCATA+TGG | + | chr4.1:21105609-21105628 | MS.gene31922:CDS | 25.0% |
| ! | TAATGATCCTGATTAATGAT+AGG | - | chr4.1:21106483-21106502 | None:intergenic | 25.0% |
| ! | TACAAGACAACTAAAACTTA+TGG | + | chr4.1:21106660-21106679 | MS.gene31922:intron | 25.0% |
| ! | TATAATACAAGCAAAGAGAA+AGG | + | chr4.1:21106890-21106909 | MS.gene31922:CDS | 25.0% |
| ! | TGTCCATTTAGTATTACAAA+TGG | - | chr4.1:21106220-21106239 | None:intergenic | 25.0% |
| !! | ATGTATTTATGTTTTCTCCA+TGG | - | chr4.1:21107109-21107128 | None:intergenic | 25.0% |
| !! | TATTTTCTTCTTGTGCTAAT+AGG | + | chr4.1:21105786-21105805 | MS.gene31922:intron | 25.0% |
| !!! | CTAAATTTTTTCCTCTTGAT+TGG | - | chr4.1:21106631-21106650 | None:intergenic | 25.0% |
| !!! | CTTAGGGTTTTTTTTTTGAA+AGG | - | chr4.1:21106438-21106457 | None:intergenic | 25.0% |
| !!! | GTTAAAGTGTTCCTTTTAAA+TGG | - | chr4.1:21107151-21107170 | None:intergenic | 25.0% |
| AAGATGATGATAAATGTGAG+AGG | + | chr4.1:21105647-21105666 | MS.gene31922:CDS | 30.0% | |
| AATGGTTAGGTCCATTTAAA+AGG | + | chr4.1:21107137-21107156 | MS.gene31922:CDS | 30.0% | |
| AGAGAAAGGTAAAAAAGCTT+AGG | - | chr4.1:21106455-21106474 | None:intergenic | 30.0% | |
| AGATGATGATAAATGTGAGA+GGG | + | chr4.1:21105648-21105667 | MS.gene31922:CDS | 30.0% | |
| CAAAGAGAAAGGAGATATTA+GGG | + | chr4.1:21106901-21106920 | MS.gene31922:CDS | 30.0% | |
| GAAAGAAAACAAAATGCACA+TGG | + | chr4.1:21107081-21107100 | MS.gene31922:CDS | 30.0% | |
| GAGAAAGGTAAAAAAGCTTA+GGG | - | chr4.1:21106454-21106473 | None:intergenic | 30.0% | |
| GTTCTGTTGAAATAAGCATA+AGG | + | chr4.1:21106049-21106068 | MS.gene31922:CDS | 30.0% | |
| TCATGATAATCATATGGAGT+TGG | + | chr4.1:21105615-21105634 | MS.gene31922:CDS | 30.0% | |
| TGAAGGTAACAATGATGAAA+AGG | + | chr4.1:21105675-21105694 | MS.gene31922:CDS | 30.0% | |
| ! | ATTTCTTGATGATTGTGATG+TGG | + | chr4.1:21105558-21105577 | MS.gene31922:CDS | 30.0% |
| ! | TTTCTTGATGATTGTGATGT+GGG | + | chr4.1:21105559-21105578 | MS.gene31922:CDS | 30.0% |
| ! | TTTTGGCCATGTAATTAAGT+GGG | + | chr4.1:21106603-21106622 | MS.gene31922:intron | 30.0% |
| !! | GTGCCATTTGTAATACTAAA+TGG | + | chr4.1:21106214-21106233 | MS.gene31922:CDS | 30.0% |
| !! | TTTTTGGCCATGTAATTAAG+TGG | + | chr4.1:21106602-21106621 | MS.gene31922:intron | 30.0% |
| AAATGTGAGAGGGTTAATGA+AGG | + | chr4.1:21105658-21105677 | MS.gene31922:CDS | 35.0% | |
| AATGATAGGACTACAGAGAA+AGG | - | chr4.1:21106469-21106488 | None:intergenic | 35.0% | |
| ATGATTTCCCACTTGAACAT+AGG | + | chr4.1:21105928-21105947 | MS.gene31922:intron | 35.0% | |
| CTGTAGTCCTATCATTAATC+AGG | + | chr4.1:21106473-21106492 | MS.gene31922:intron | 35.0% | |
| GCAAAGAGAAAGGAGATATT+AGG | + | chr4.1:21106900-21106919 | MS.gene31922:CDS | 35.0% | |
| TACATGCAAGCTAAATGGTT+AGG | + | chr4.1:21107124-21107143 | MS.gene31922:CDS | 35.0% | |
| TGATTTCCCACTTGAACATA+GGG | + | chr4.1:21105929-21105948 | MS.gene31922:intron | 35.0% | |
| TTAACAGCAGTATGCACATT+AGG | - | chr4.1:21107268-21107287 | None:intergenic | 35.0% | |
| TTGGAACCCACTTAATTACA+TGG | - | chr4.1:21106612-21106631 | None:intergenic | 35.0% | |
| TTTCATTGGGATATTCTGAG+AGG | + | chr4.1:21107179-21107198 | MS.gene31922:CDS | 35.0% | |
| ! | AGAACTTGTTCTGTATAGGT+TGG | - | chr4.1:21106034-21106053 | None:intergenic | 35.0% |
| ! | CAACAGAACTTGTTCTGTAT+AGG | - | chr4.1:21106038-21106057 | None:intergenic | 35.0% |
| ! | TTTCGAGCACAATTTGAGAT+GGG | + | chr4.1:21106941-21106960 | MS.gene31922:CDS | 35.0% |
| !!! | TAAAACCACCATTTTGAAGC+TGG | - | chr4.1:21106191-21106210 | None:intergenic | 35.0% |
| AAAACAATGTCGACATGAGC+TGG | - | chr4.1:21106151-21106170 | None:intergenic | 40.0% | |
| AAACTGCCTGAGGTTTATGT+AGG | + | chr4.1:21106998-21107017 | MS.gene31922:CDS | 40.0% | |
| AAATTGGAGTGCATTTGCAG+TGG | + | chr4.1:21106111-21106130 | MS.gene31922:CDS | 40.0% | |
| AAGACTATAACCGTCTTGTG+AGG | + | chr4.1:21106975-21106994 | MS.gene31922:CDS | 40.0% | |
| AATTCCCTACGAAAACCAAC+AGG | - | chr4.1:21105481-21105500 | None:intergenic | 40.0% | |
| ACGGTTAACATTGATGCCTT+TGG | - | chr4.1:21107226-21107245 | None:intergenic | 40.0% | |
| AGGCAAATACCTAGTAACAC+GGG | - | chr4.1:21105461-21105480 | None:intergenic | 40.0% | |
| ATTACGACCCTATGTTCAAG+TGG | - | chr4.1:21105939-21105958 | None:intergenic | 40.0% | |
| CAATATGCAGACACAAGTCT+TGG | + | chr4.1:21105520-21105539 | MS.gene31922:CDS | 40.0% | |
| CAGGCAAATACCTAGTAACA+CGG | - | chr4.1:21105462-21105481 | None:intergenic | 40.0% | |
| CTTTCGAGCACAATTTGAGA+TGG | + | chr4.1:21106940-21106959 | MS.gene31922:CDS | 40.0% | |
| GATCAATTACCTGCAAAAGC+TGG | - | chr4.1:21105726-21105745 | None:intergenic | 40.0% | |
| GTTACTAGGTATTTGCCTGT+TGG | + | chr4.1:21105463-21105482 | MS.gene31922:CDS | 40.0% | |
| TTACGACCCTATGTTCAAGT+GGG | - | chr4.1:21105938-21105957 | None:intergenic | 40.0% | |
| ! | GATGATTGTGATGTGGGTTT+TGG | + | chr4.1:21105565-21105584 | MS.gene31922:CDS | 40.0% |
| ! | GCTTTTCCTACATAAACCTC+AGG | - | chr4.1:21107007-21107026 | None:intergenic | 40.0% |
| ! | GTTTTCGTAGGGAATTGTCT+AGG | + | chr4.1:21105485-21105504 | MS.gene31922:CDS | 40.0% |
| ! | TTAAGTGGGTTCCAATCAAG+AGG | + | chr4.1:21106617-21106636 | MS.gene31922:intron | 40.0% |
| !!! | ATTTGCCTGTTGGTTTTCGT+AGG | + | chr4.1:21105473-21105492 | MS.gene31922:CDS | 40.0% |
| !!! | TTTGCCTGTTGGTTTTCGTA+GGG | + | chr4.1:21105474-21105493 | MS.gene31922:CDS | 40.0% |
| ACAAAATGCACATGGGACCA+TGG | + | chr4.1:21107089-21107108 | MS.gene31922:CDS | 45.0% | |
| GTCTCTAGCCAGCTTCAAAA+TGG | + | chr4.1:21106180-21106199 | MS.gene31922:CDS | 45.0% | |
| TAGTCCAAAGCAGAAGCCAA+AGG | + | chr4.1:21107207-21107226 | MS.gene31922:CDS | 45.0% | |
| TCTAGCCAGCTTCAAAATGG+TGG | + | chr4.1:21106183-21106202 | MS.gene31922:CDS | 45.0% | |
| TTACCTGCAAAAGCTGGAGT+TGG | - | chr4.1:21105720-21105739 | None:intergenic | 45.0% | |
| !! | TGCAGGGGAGCATACATTTT+TGG | + | chr4.1:21106859-21106878 | MS.gene31922:intron | 45.0% |
| !! | GTAAATAAAAATAAAATTAA+AGG | - | chr4.1:21105859-21105878 | None:intergenic | 5.0% |
| CAGGCAGTTTCCTCACAAGA+CGG | - | chr4.1:21106988-21107007 | None:intergenic | 50.0% | |
| CCTAGTAACACGGGACATAG+AGG | - | chr4.1:21105452-21105471 | None:intergenic | 50.0% | |
| TCTTGTGAGGAAACTGCCTG+AGG | + | chr4.1:21106988-21107007 | MS.gene31922:CDS | 50.0% | |
| TGCATTTGCAGTGGACAGAG+TGG | + | chr4.1:21106120-21106139 | MS.gene31922:CDS | 50.0% | |
| ! | CAACCAACTCCAGCTTTTGC+AGG | + | chr4.1:21105714-21105733 | MS.gene31922:CDS | 50.0% |
| ! | CCTCTATGTCCCGTGTTACT+AGG | + | chr4.1:21105449-21105468 | MS.gene31922:CDS | 50.0% |
| ! | GATGCCTTTGGCTTCTGCTT+TGG | - | chr4.1:21107214-21107233 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 21105439 | 21107297 | 21105439 | ID=MS.gene31922 |
| chr4.1 | mRNA | 21105439 | 21107297 | 21105439 | ID=MS.gene31922.t1;Parent=MS.gene31922 |
| chr4.1 | exon | 21105439 | 21105735 | 21105439 | ID=MS.gene31922.t1.exon1;Parent=MS.gene31922.t1 |
| chr4.1 | CDS | 21105439 | 21105735 | 21105439 | ID=cds.MS.gene31922.t1;Parent=MS.gene31922.t1 |
| chr4.1 | exon | 21106030 | 21106261 | 21106030 | ID=MS.gene31922.t1.exon2;Parent=MS.gene31922.t1 |
| chr4.1 | CDS | 21106030 | 21106261 | 21106030 | ID=cds.MS.gene31922.t1;Parent=MS.gene31922.t1 |
| chr4.1 | exon | 21106864 | 21107297 | 21106864 | ID=MS.gene31922.t1.exon3;Parent=MS.gene31922.t1 |
| chr4.1 | CDS | 21106864 | 21107297 | 21106864 | ID=cds.MS.gene31922.t1;Parent=MS.gene31922.t1 |
| Gene Sequence |
| Protein sequence |
