Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31996.t1 | KEH31018.1 | 85.9 | 382 | 38 | 2 | 1 | 382 | 1 | 366 | 1.20E-175 | 625.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31996.t1 | Q9S7T8 | 52.3 | 386 | 177 | 4 | 7 | 385 | 5 | 390 | 1.1e-111 | 404.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31996.t1 | A0A072UPQ2 | 85.9 | 382 | 38 | 2 | 1 | 382 | 1 | 366 | 8.8e-176 | 625.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene31996 | PPI |
| MS.gene031697 | MS.gene31996 | PPI |
| MS.gene31996 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene31996 | PPI |
| MS.gene31996 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31996.t1 | MTR_4g088535 | 85.864 | 382 | 38 | 2 | 1 | 382 | 1 | 366 | 0.0 | 635 |
| MS.gene31996.t1 | MTR_8g027395 | 78.421 | 380 | 82 | 0 | 6 | 385 | 16 | 395 | 0.0 | 617 |
| MS.gene31996.t1 | MTR_8g027420 | 78.684 | 380 | 70 | 1 | 6 | 385 | 5 | 373 | 0.0 | 609 |
| MS.gene31996.t1 | MTR_4g088525 | 80.055 | 361 | 72 | 0 | 26 | 386 | 8 | 368 | 0.0 | 581 |
| MS.gene31996.t1 | MTR_3g101010 | 72.135 | 384 | 103 | 1 | 7 | 386 | 5 | 388 | 0.0 | 536 |
| MS.gene31996.t1 | MTR_3g018740 | 71.875 | 384 | 105 | 2 | 7 | 387 | 5 | 388 | 0.0 | 529 |
| MS.gene31996.t1 | MTR_4g045707 | 68.490 | 384 | 119 | 2 | 5 | 386 | 4 | 387 | 0.0 | 516 |
| MS.gene31996.t1 | MTR_3g101030 | 63.636 | 407 | 121 | 7 | 5 | 386 | 24 | 428 | 1.97e-171 | 485 |
| MS.gene31996.t1 | MTR_2g045980 | 65.375 | 387 | 125 | 3 | 7 | 387 | 5 | 388 | 4.00e-170 | 480 |
| MS.gene31996.t1 | MTR_2g046030 | 64.599 | 387 | 128 | 3 | 7 | 387 | 5 | 388 | 4.29e-169 | 478 |
| MS.gene31996.t1 | MTR_8g461160 | 63.239 | 389 | 135 | 2 | 5 | 385 | 4 | 392 | 1.20e-168 | 477 |
| MS.gene31996.t1 | MTR_3g101180 | 62.785 | 395 | 133 | 3 | 5 | 385 | 4 | 398 | 1.19e-166 | 472 |
| MS.gene31996.t1 | MTR_3g048000 | 62.629 | 388 | 124 | 4 | 4 | 387 | 22 | 392 | 1.30e-166 | 472 |
| MS.gene31996.t1 | MTR_7g050810 | 59.690 | 387 | 148 | 2 | 7 | 385 | 16 | 402 | 1.91e-159 | 454 |
| MS.gene31996.t1 | MTR_3g101130 | 61.140 | 386 | 139 | 3 | 7 | 385 | 6 | 387 | 1.20e-158 | 451 |
| MS.gene31996.t1 | MTR_7g451890 | 58.656 | 387 | 152 | 2 | 7 | 385 | 14 | 400 | 3.60e-156 | 446 |
| MS.gene31996.t1 | MTR_7g050750 | 58.915 | 387 | 151 | 2 | 7 | 385 | 8 | 394 | 6.01e-156 | 445 |
| MS.gene31996.t1 | MTR_7g047780 | 59.173 | 387 | 150 | 2 | 7 | 385 | 14 | 400 | 2.93e-155 | 443 |
| MS.gene31996.t1 | MTR_3g101050 | 59.898 | 394 | 127 | 6 | 5 | 387 | 25 | 398 | 2.20e-149 | 428 |
| MS.gene31996.t1 | MTR_3g015620 | 60.207 | 387 | 122 | 4 | 7 | 385 | 16 | 378 | 1.24e-146 | 421 |
| MS.gene31996.t1 | MTR_3g102920 | 57.584 | 389 | 121 | 6 | 5 | 385 | 56 | 408 | 9.92e-139 | 402 |
| MS.gene31996.t1 | MTR_3g101200 | 53.506 | 385 | 148 | 4 | 7 | 385 | 31 | 390 | 6.25e-129 | 376 |
| MS.gene31996.t1 | MTR_3g101190 | 54.062 | 357 | 105 | 3 | 29 | 385 | 13 | 310 | 1.35e-121 | 354 |
| MS.gene31996.t1 | MTR_3g100995 | 66.535 | 254 | 80 | 3 | 135 | 385 | 11 | 262 | 6.93e-117 | 340 |
| MS.gene31996.t1 | MTR_3g018747 | 67.433 | 261 | 67 | 3 | 131 | 387 | 9 | 255 | 5.05e-114 | 333 |
| MS.gene31996.t1 | MTR_3g100010 | 54.678 | 342 | 99 | 5 | 6 | 308 | 12 | 336 | 4.01e-113 | 334 |
| MS.gene31996.t1 | MTR_7g050830 | 53.247 | 308 | 111 | 3 | 13 | 298 | 22 | 318 | 4.19e-103 | 308 |
| MS.gene31996.t1 | MTR_3g015760 | 57.455 | 275 | 109 | 4 | 116 | 385 | 8 | 279 | 6.68e-98 | 293 |
| MS.gene31996.t1 | MTR_3g114310 | 44.961 | 387 | 196 | 10 | 12 | 384 | 24 | 407 | 2.67e-97 | 296 |
| MS.gene31996.t1 | MTR_3g100520 | 64.815 | 216 | 65 | 4 | 172 | 385 | 1 | 207 | 4.28e-89 | 268 |
| MS.gene31996.t1 | MTR_3g101110 | 58.996 | 239 | 64 | 4 | 131 | 361 | 68 | 280 | 3.75e-86 | 263 |
| MS.gene31996.t1 | MTR_3g111160 | 67.980 | 203 | 62 | 2 | 187 | 386 | 17 | 219 | 7.00e-86 | 260 |
| MS.gene31996.t1 | MTR_3g099970 | 64.286 | 196 | 53 | 2 | 131 | 326 | 20 | 198 | 6.84e-83 | 251 |
| MS.gene31996.t1 | MTR_2g046410 | 61.468 | 218 | 75 | 4 | 176 | 387 | 135 | 349 | 7.32e-79 | 246 |
| MS.gene31996.t1 | MTR_3g102870 | 69.182 | 159 | 49 | 0 | 196 | 354 | 3 | 161 | 4.27e-71 | 221 |
| MS.gene31996.t1 | MTR_3g111150 | 62.428 | 173 | 41 | 1 | 10 | 182 | 2 | 150 | 3.68e-67 | 210 |
| MS.gene31996.t1 | MTR_3g101020 | 56.522 | 184 | 51 | 3 | 205 | 385 | 1 | 158 | 1.85e-61 | 195 |
| MS.gene31996.t1 | MTR_3g101150 | 62.420 | 157 | 51 | 1 | 237 | 385 | 1 | 157 | 4.30e-60 | 192 |
| MS.gene31996.t1 | MTR_3g100990 | 59.333 | 150 | 60 | 1 | 7 | 156 | 5 | 153 | 2.99e-49 | 174 |
| MS.gene31996.t1 | MTR_4g093550 | 66.667 | 84 | 28 | 0 | 7 | 90 | 6 | 89 | 1.90e-29 | 109 |
| MS.gene31996.t1 | MTR_6g046890 | 62.500 | 72 | 27 | 0 | 15 | 86 | 7 | 78 | 1.43e-18 | 82.0 |
| MS.gene31996.t1 | MTR_3g101140 | 55.882 | 68 | 25 | 1 | 324 | 386 | 48 | 115 | 7.40e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31996.t1 | AT1G47710 | 52.332 | 386 | 177 | 4 | 7 | 385 | 5 | 390 | 7.31e-143 | 411 |
| MS.gene31996.t1 | AT1G47710 | 52.332 | 386 | 177 | 4 | 7 | 385 | 32 | 417 | 2.89e-142 | 411 |
| MS.gene31996.t1 | AT3G45220 | 47.423 | 388 | 192 | 4 | 7 | 384 | 5 | 390 | 9.70e-123 | 360 |
| MS.gene31996.t1 | AT2G25240 | 49.479 | 384 | 182 | 7 | 7 | 384 | 5 | 382 | 1.36e-122 | 360 |
| MS.gene31996.t1 | AT2G26390 | 46.907 | 388 | 190 | 7 | 7 | 384 | 5 | 386 | 8.33e-117 | 345 |
| MS.gene31996.t1 | AT1G64030 | 42.784 | 388 | 191 | 5 | 7 | 384 | 5 | 371 | 2.17e-103 | 311 |
| MS.gene31996.t1 | AT2G14540 | 44.186 | 387 | 185 | 7 | 7 | 384 | 33 | 397 | 7.81e-100 | 302 |
| MS.gene31996.t1 | AT1G62170 | 42.975 | 363 | 176 | 4 | 31 | 384 | 91 | 431 | 8.63e-100 | 303 |
| MS.gene31996.t1 | AT1G62170 | 39.394 | 396 | 176 | 5 | 31 | 384 | 91 | 464 | 1.20e-92 | 286 |
| MS.gene31996.t1 | AT2G35580 | 42.340 | 359 | 178 | 7 | 35 | 384 | 33 | 371 | 2.35e-88 | 272 |
| MS.gene31996.t1 | AT1G64010 | 45.370 | 216 | 94 | 4 | 172 | 384 | 1 | 195 | 2.74e-60 | 194 |
| MS.gene31996.t1 | AT1G64010 | 45.050 | 202 | 87 | 4 | 186 | 384 | 1 | 181 | 2.49e-54 | 178 |
| MS.gene31996.t1 | AT1G62160 | 40.909 | 176 | 83 | 4 | 211 | 384 | 62 | 218 | 8.60e-35 | 128 |
| MS.gene31996.t1 | AT1G63280 | 50.435 | 115 | 53 | 2 | 131 | 243 | 8 | 120 | 1.59e-31 | 116 |
| MS.gene31996.t1 | AT1G51330 | 55.789 | 95 | 42 | 0 | 130 | 224 | 30 | 124 | 7.46e-28 | 108 |
| MS.gene31996.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 12 | 121 | 10 | 120 | 5.99e-13 | 65.5 |
| MS.gene31996.t1 | AT2G35555 | 37.143 | 105 | 44 | 2 | 251 | 353 | 1 | 85 | 2.87e-11 | 60.8 |
Find 78 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGAAAATTTGAATTT+TGG | 0.142435 | 4.3:+24710091 | None:intergenic |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 4.3:-24710522 | MS.gene31996:CDS |
| AATCGTGTCTCAAGATTATA+AGG | 0.307189 | 4.3:-24711904 | MS.gene31996:CDS |
| CTCAAAGATGCTACTTCTTC+CGG | 0.332638 | 4.3:-24711999 | MS.gene31996:CDS |
| GTCCCGCAAAGAGGATTGTT+TGG | 0.348276 | 4.3:+24709810 | None:intergenic |
| CTTGTCATCCAATCAGGAAA+TGG | 0.349930 | 4.3:+24710385 | None:intergenic |
| ACCCAAACAATCCTCTTTGC+GGG | 0.361274 | 4.3:-24709812 | MS.gene31996:CDS |
| TCTCCTTCGTCGACGGTGTT+TGG | 0.362110 | 4.3:-24711965 | MS.gene31996:CDS |
| TCCCGCAAAGAGGATTGTTT+GGG | 0.373202 | 4.3:+24709811 | None:intergenic |
| GGAGTAATCCATTTCCTGAT+TGG | 0.397440 | 4.3:-24710393 | MS.gene31996:CDS |
| CTTCGTCGACGGTGTTTGGC+TGG | 0.398379 | 4.3:-24711961 | MS.gene31996:CDS |
| TTCTTTGGAGAAAAGATGAT+TGG | 0.408590 | 4.3:+24712184 | None:intergenic |
| TATTTGCTTGTCATCCAATC+AGG | 0.409872 | 4.3:+24710379 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.417147 | 4.3:-24710208 | MS.gene31996:CDS |
| CCAACTCGCACTCTATTACT+AGG | 0.420097 | 4.3:+24710127 | None:intergenic |
| TTGAGACACGATTTGTTTGA+AGG | 0.423192 | 4.3:+24711914 | None:intergenic |
| GAAGGAGAGGTGAGGACCAC+CGG | 0.426414 | 4.3:+24711980 | None:intergenic |
| TGAAGGAAGATTGAAGAGAA+AGG | 0.431049 | 4.3:+24711931 | None:intergenic |
| TTTCTCATTTACTTCAATGA+AGG | 0.433659 | 4.3:+24709943 | None:intergenic |
| CATCATCGCTGCTGGTTCTG+AGG | 0.444526 | 4.3:-24712111 | MS.gene31996:CDS |
| ACTGTAGCTGCTGCAGCCAG+TGG | 0.451974 | 4.3:-24709917 | MS.gene31996:CDS |
| GAAGGAAGATTGAAGAGAAA+GGG | 0.453228 | 4.3:+24711932 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 4.3:-24710521 | MS.gene31996:CDS |
| GATGATCAGTTGATTTGAAA+CGG | 0.457664 | 4.3:+24712057 | None:intergenic |
| GTCAGCTTTGGTTGAGAAGG+TGG | 0.459796 | 4.3:-24710182 | MS.gene31996:CDS |
| TCTCGAATGCTGAAGGATCT+AGG | 0.461668 | 4.3:-24710058 | MS.gene31996:CDS |
| TACTAGGAAGCATGTGGTCT+AGG | 0.463533 | 4.3:+24710143 | None:intergenic |
| TGCAGCCAGTGGTGCACTTG+TGG | 0.465613 | 4.3:-24709906 | MS.gene31996:CDS |
| ATCAAGGTTGGTGGTCATGA+AGG | 0.471015 | 4.3:+24710318 | None:intergenic |
| AAGCTCTAATAAACTGATCA+AGG | 0.475321 | 4.3:+24710302 | None:intergenic |
| CGATGATGCTGAGCACAACT+TGG | 0.481338 | 4.3:+24712126 | None:intergenic |
| GTGCTCAGCATCATCGCTGC+TGG | 0.482096 | 4.3:-24712119 | MS.gene31996:CDS |
| CATGGCCACAAGTGCACCAC+TGG | 0.482503 | 4.3:+24709901 | None:intergenic |
| AACCCAAACAATCCTCTTTG+CGG | 0.485811 | 4.3:-24709813 | MS.gene31996:CDS |
| CGGAAGAAGTAGCATCTTTG+AGG | 0.492859 | 4.3:+24712000 | None:intergenic |
| TGGTGAGAGAAACTTTCGTT+TGG | 0.493673 | 4.3:+24712210 | None:intergenic |
| GTGGCCATGTGTATTCCATC+TGG | 0.494909 | 4.3:-24709887 | MS.gene31996:CDS |
| ATAAAAGAACTTCTTCCTCA+AGG | 0.498947 | 4.3:-24710475 | MS.gene31996:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 4.3:+24710435 | None:intergenic |
| GAAGGACTTGTGAAATATGT+TGG | 0.499945 | 4.3:+24709961 | None:intergenic |
| AAAAGATGGTCTGTCAGCTT+TGG | 0.500468 | 4.3:-24710194 | MS.gene31996:CDS |
| TTCATTGAAGTAAATGAGAA+AGG | 0.501361 | 4.3:-24709941 | MS.gene31996:CDS |
| TCTAATAAACTGATCAAGGT+TGG | 0.505126 | 4.3:+24710306 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 4.3:+24710025 | None:intergenic |
| CTTCGTCTTCCTTATAAGCA+AGG | 0.506335 | 4.3:-24710262 | MS.gene31996:CDS |
| AAAATGGTGGACTCACTTGA+AGG | 0.507736 | 4.3:-24710001 | MS.gene31996:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 4.3:+24709842 | None:intergenic |
| AGTAATAGAGTGCGAGTTGG+TGG | 0.515787 | 4.3:-24710124 | MS.gene31996:CDS |
| TAAAAGAACTTCTTCCTCAA+GGG | 0.519561 | 4.3:-24710474 | MS.gene31996:CDS |
| ATCATCGCTGCTGGTTCTGA+GGG | 0.520290 | 4.3:-24712110 | MS.gene31996:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 4.3:+24709843 | None:intergenic |
| GCTATAAAGTCTACTCCAGA+TGG | 0.537833 | 4.3:+24709872 | None:intergenic |
| GAAGAAGAACAAACAATGGC+GGG | 0.540611 | 4.3:-24712257 | None:intergenic |
| CCTCACCTCTCCTTCGTCGA+CGG | 0.544904 | 4.3:-24711972 | MS.gene31996:CDS |
| ACTTATGATCACTCAGAAAG+AGG | 0.545743 | 4.3:+24709776 | None:intergenic |
| TGAAACTTCTCGAATGCTGA+AGG | 0.558916 | 4.3:-24710065 | MS.gene31996:CDS |
| TCTGAATGGCAGCTCAGTCA+AGG | 0.571104 | 4.3:-24710344 | MS.gene31996:CDS |
| AATAAACTGATCAAGGTTGG+TGG | 0.575387 | 4.3:+24710309 | None:intergenic |
| TCTGTCAGCTTTGGTTGAGA+AGG | 0.577265 | 4.3:-24710185 | MS.gene31996:CDS |
| GAAATATGTTGGAAACTGAA+AGG | 0.583772 | 4.3:+24709972 | None:intergenic |
| TTCTGTTGATTTCAAGAACG+AGG | 0.587661 | 4.3:-24711871 | MS.gene31996:intron |
| TCAAGGTTGGTGGTCATGAA+GGG | 0.598587 | 4.3:+24710319 | None:intergenic |
| TGACTGAGCTGCCATTCAGA+AGG | 0.600319 | 4.3:+24710347 | None:intergenic |
| GAAATCAACAGAAGACAAAG+TGG | 0.613498 | 4.3:+24711881 | None:intergenic |
| CAGCCAAACACCGTCGACGA+AGG | 0.620777 | 4.3:+24711962 | None:intergenic |
| TGAGCACTTGTCCCGCAAAG+AGG | 0.621340 | 4.3:+24709801 | None:intergenic |
| AGAAAGTAGATGAGAGACAG+AGG | 0.627958 | 4.3:+24712028 | None:intergenic |
| AGCACAACTTGGAGAGACAA+TGG | 0.636110 | 4.3:+24712137 | None:intergenic |
| GGAGAAAAGATGATTGGCGA+TGG | 0.639138 | 4.3:+24712190 | None:intergenic |
| AAACACCGTCGACGAAGGAG+AGG | 0.646417 | 4.3:+24711967 | None:intergenic |
| AAAGATGCTACTTCTTCCGG+TGG | 0.648544 | 4.3:-24711996 | MS.gene31996:CDS |
| CCTAGTAATAGAGTGCGAGT+TGG | 0.649890 | 4.3:-24710127 | MS.gene31996:CDS |
| TACTCCAGATGGAATACACA+TGG | 0.653449 | 4.3:+24709883 | None:intergenic |
| CTCTATTACTAGGAAGCATG+TGG | 0.654298 | 4.3:+24710137 | None:intergenic |
| ATAAGCAAGGAAAAGATGAG+AGG | 0.663354 | 4.3:-24710249 | MS.gene31996:CDS |
| CCGTCGACGAAGGAGAGGTG+AGG | 0.692216 | 4.3:+24711972 | None:intergenic |
| GATCAGTTGATTTGAAACGG+AGG | 0.698316 | 4.3:+24712060 | None:intergenic |
| AAGTTGTCGACTGACCCTTG+AGG | 0.724613 | 4.3:+24710460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATAAAATAACCACA+TGG | + | chr4.3:24710517-24710536 | None:intergenic | 15.0% |
| !! | AATATATAAAATAACCACAT+GGG | + | chr4.3:24710516-24710535 | None:intergenic | 15.0% |
| !! | ATTGTAATTAAAACATAAGT+TGG | - | chr4.3:24710756-24710775 | MS.gene31996:intron | 15.0% |
| !!! | CAAAATTCAAATTTTCATAT+GGG | - | chr4.3:24711936-24711955 | MS.gene31996:CDS | 15.0% |
| !!! | TAAATTTGACATGATTTTAA+AGG | - | chr4.3:24711472-24711491 | MS.gene31996:intron | 15.0% |
| !! | ACTACTAGAAAATCAAAAAT+AGG | + | chr4.3:24710656-24710675 | None:intergenic | 20.0% |
| !! | CTACTAGAAAATCAAAAATA+GGG | + | chr4.3:24710655-24710674 | None:intergenic | 20.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | + | chr4.3:24712186-24712205 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | + | chr4.3:24712187-24712206 | None:intergenic | 20.0% |
| !! | TTTGTTTGTTTGTAAAAACT+CGG | - | chr4.3:24710372-24710391 | MS.gene31996:CDS | 20.0% |
| !!! | CCAAAATTCAAATTTTCATA+TGG | - | chr4.3:24711935-24711954 | MS.gene31996:CDS | 20.0% |
| !!! | CCATATGAAAATTTGAATTT+TGG | + | chr4.3:24711938-24711957 | None:intergenic | 20.0% |
| ! | AAAACAATAAGAAGAAGAAG+AGG | + | chr4.3:24711334-24711353 | None:intergenic | 25.0% |
| ! | AGAAAAGCAAAAATTAGAGA+GGG | - | chr4.3:24710572-24710591 | MS.gene31996:intron | 25.0% |
| ! | GAATCCCATCATTTATATAT+GGG | - | chr4.3:24710405-24710424 | MS.gene31996:CDS | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | - | chr4.3:24711505-24711524 | MS.gene31996:intron | 25.0% |
| ! | GGAAAAAAAAATCTACTTTG+TGG | + | chr4.3:24711037-24711056 | None:intergenic | 25.0% |
| ! | TAGAAAAGCAAAAATTAGAG+AGG | - | chr4.3:24710571-24710590 | MS.gene31996:intron | 25.0% |
| ! | TGAAATGGAAAGATTAAATC+AGG | + | chr4.3:24710999-24711018 | None:intergenic | 25.0% |
| ! | TGAATCCCATCATTTATATA+TGG | - | chr4.3:24710404-24710423 | MS.gene31996:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | - | chr4.3:24711504-24711523 | MS.gene31996:intron | 25.0% |
| ! | TTAGCCCATATATAAATGAT+GGG | + | chr4.3:24710412-24710431 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAGAA+AGG | - | chr4.3:24712085-24712104 | MS.gene31996:CDS | 25.0% |
| ! | TTTCTCATTTACTTCAATGA+AGG | + | chr4.3:24712086-24712105 | None:intergenic | 25.0% |
| ! | TTTGATTAATGGTTATACTG+TGG | - | chr4.3:24710898-24710917 | MS.gene31996:intron | 25.0% |
| !! | GTGGAAACAAATTTAGAATA+CGG | + | chr4.3:24711098-24711117 | None:intergenic | 25.0% |
| !! | TAAATTTGTTTCCACTGTAT+GGG | - | chr4.3:24711103-24711122 | MS.gene31996:intron | 25.0% |
| !! | TGATGTGTTATTCATGAAAA+AGG | + | chr4.3:24711058-24711077 | None:intergenic | 25.0% |
| !! | TTCATGCTTAATTTTATGCT+AGG | - | chr4.3:24710268-24710287 | MS.gene31996:CDS | 25.0% |
| !!! | CATTTTTGGTGTTTGATTAA+TGG | - | chr4.3:24710887-24710906 | MS.gene31996:intron | 25.0% |
| !!! | GCTAATGCATTGTATTTTAA+AGG | - | chr4.3:24711605-24711624 | MS.gene31996:intron | 25.0% |
| AATCGTGTCTCAAGATTATA+AGG | - | chr4.3:24710122-24710141 | MS.gene31996:CDS | 30.0% | |
| AGTGTTAGTAATTATACCCT+TGG | - | chr4.3:24710958-24710977 | MS.gene31996:intron | 30.0% | |
| ATAAAAGAACTTCTTCCTCA+AGG | - | chr4.3:24711551-24711570 | MS.gene31996:intron | 30.0% | |
| ATAAAATAACCACATGGGTT+AGG | + | chr4.3:24710511-24710530 | None:intergenic | 30.0% | |
| ATAGGGAGGAAAATTAATGA+CGG | + | chr4.3:24710638-24710657 | None:intergenic | 30.0% | |
| CTAGAAAATCAAAAATAGGG+AGG | + | chr4.3:24710652-24710671 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACTGAA+AGG | + | chr4.3:24712057-24712076 | None:intergenic | 30.0% | |
| GATGTTATGCTAACTTGATT+TGG | - | chr4.3:24710927-24710946 | MS.gene31996:intron | 30.0% | |
| GTTAGCCCATATATAAATGA+TGG | + | chr4.3:24710413-24710432 | None:intergenic | 30.0% | |
| TAAAAGAACTTCTTCCTCAA+GGG | - | chr4.3:24711552-24711571 | MS.gene31996:intron | 30.0% | |
| TAGTAATTATACCCTTGGTT+TGG | - | chr4.3:24710963-24710982 | MS.gene31996:intron | 30.0% | |
| TATAGCAGTGCTAAATTAGT+TGG | + | chr4.3:24711364-24711383 | None:intergenic | 30.0% | |
| TCTAATAAACTGATCAAGGT+TGG | + | chr4.3:24711723-24711742 | None:intergenic | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | - | chr4.3:24711002-24711021 | MS.gene31996:intron | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | - | chr4.3:24711818-24711837 | MS.gene31996:intron | 30.0% | |
| ! | AAGCTCTAATAAACTGATCA+AGG | + | chr4.3:24711727-24711746 | None:intergenic | 30.0% |
| ! | AATGGTTATACTGTGGTTTT+TGG | - | chr4.3:24710905-24710924 | MS.gene31996:intron | 30.0% |
| ! | AATTAATGACGGAATTAGAG+AGG | + | chr4.3:24710627-24710646 | None:intergenic | 30.0% |
| ! | ATTAATGACGGAATTAGAGA+GGG | + | chr4.3:24710626-24710645 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | - | chr4.3:24711731-24711750 | MS.gene31996:intron | 30.0% |
| ! | CTAAATTTGTTTCCACTGTA+TGG | - | chr4.3:24711102-24711121 | MS.gene31996:intron | 30.0% |
| ! | GATGTTCTTTTCTGATTCTT+TGG | + | chr4.3:24709860-24709879 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | - | chr4.3:24711668-24711687 | MS.gene31996:intron | 30.0% |
| ! | TCATCTTTTCCTTGCTTATA+AGG | + | chr4.3:24711776-24711795 | None:intergenic | 30.0% |
| ! | TGCTTAATTTTATGCTAGGT+TGG | - | chr4.3:24710272-24710291 | MS.gene31996:CDS | 30.0% |
| ! | TGTAGTTGTTAACGCATTTT+TGG | - | chr4.3:24710873-24710892 | MS.gene31996:intron | 30.0% |
| ! | TTCTTTGGAGAAAAGATGAT+TGG | + | chr4.3:24709845-24709864 | None:intergenic | 30.0% |
| !! | CATTGTATTTTAAAGGAGCA+TGG | - | chr4.3:24711612-24711631 | MS.gene31996:intron | 30.0% |
| !! | GATGATCAGTTGATTTGAAA+CGG | + | chr4.3:24709972-24709991 | None:intergenic | 30.0% |
| !! | TTTGCTTTTCTAGTAGAGAT+GGG | + | chr4.3:24710563-24710582 | None:intergenic | 30.0% |
| !! | TTTTGCTTTTCTAGTAGAGA+TGG | + | chr4.3:24710564-24710583 | None:intergenic | 30.0% |
| !!! | ATCGCAATAATGCCTTTTTT+CGG | - | chr4.3:24710838-24710857 | MS.gene31996:intron | 30.0% |
| !!! | CATAAGTTGGTTTTGTGATT+TGG | - | chr4.3:24710769-24710788 | MS.gene31996:intron | 30.0% |
| AATAAACTGATCAAGGTTGG+TGG | + | chr4.3:24711720-24711739 | None:intergenic | 35.0% | |
| ATAAGCAAGGAAAAGATGAG+AGG | - | chr4.3:24711777-24711796 | MS.gene31996:intron | 35.0% | |
| GAAATCAACAGAAGACAAAG+TGG | + | chr4.3:24710148-24710167 | None:intergenic | 35.0% | |
| GAAATTATGAGCCAAACCAA+GGG | + | chr4.3:24710977-24710996 | None:intergenic | 35.0% | |
| GAAGGAAGATTGAAGAGAAA+GGG | + | chr4.3:24710097-24710116 | None:intergenic | 35.0% | |
| GAAGGACTTGTGAAATATGT+TGG | + | chr4.3:24712068-24712087 | None:intergenic | 35.0% | |
| GATATCAGGTTTGAATCCTT+CGG | + | chr4.3:24710451-24710470 | None:intergenic | 35.0% | |
| GTTTGTAAAAACTCGGTATC+CGG | - | chr4.3:24710379-24710398 | MS.gene31996:CDS | 35.0% | |
| TAGAGAGGGAAATTTAGAGA+GGG | - | chr4.3:24710586-24710605 | MS.gene31996:intron | 35.0% | |
| TATCACAAACTTGGGCTTAA+TGG | - | chr4.3:24710295-24710314 | MS.gene31996:CDS | 35.0% | |
| TATTTGCTTGTCATCCAATC+AGG | + | chr4.3:24711650-24711669 | None:intergenic | 35.0% | |
| TGAAATCCTACTAACTCTCT+TGG | + | chr4.3:24711152-24711171 | None:intergenic | 35.0% | |
| TGAAGGAAGATTGAAGAGAA+AGG | + | chr4.3:24710098-24710117 | None:intergenic | 35.0% | |
| TTAGAGAGGGAAATTTAGAG+AGG | - | chr4.3:24710585-24710604 | MS.gene31996:intron | 35.0% | |
| TTCAAACCTGATATCTTGAG+AGG | - | chr4.3:24710456-24710475 | MS.gene31996:CDS | 35.0% | |
| TTTGTAAAAACTCGGTATCC+GGG | - | chr4.3:24710380-24710399 | MS.gene31996:CDS | 35.0% | |
| ! | ATAAATGATGGGATTCATCC+CGG | + | chr4.3:24710401-24710420 | None:intergenic | 35.0% |
| ! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr4.3:24711995-24712014 | MS.gene31996:CDS | 35.0% |
| ! | GTGATTTTACCTTTCTCTTC+TGG | - | chr4.3:24711992-24712011 | MS.gene31996:CDS | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | - | chr4.3:24712009-24712028 | MS.gene31996:CDS | 35.0% |
| ! | TTGAGACACGATTTGTTTGA+AGG | + | chr4.3:24710115-24710134 | None:intergenic | 35.0% |
| !! | GATTTTCTAGTAGTGCATGT+GGG | - | chr4.3:24710662-24710681 | MS.gene31996:intron | 35.0% |
| !! | TAGGTTGGTATCACAAACTT+GGG | - | chr4.3:24710287-24710306 | MS.gene31996:CDS | 35.0% |
| !! | TGATTTTCTAGTAGTGCATG+TGG | - | chr4.3:24710661-24710680 | MS.gene31996:intron | 35.0% |
| !! | TTCTGTTGATTTCAAGAACG+AGG | - | chr4.3:24710155-24710174 | MS.gene31996:CDS | 35.0% |
| AAAAGATGGTCTGTCAGCTT+TGG | - | chr4.3:24711832-24711851 | MS.gene31996:intron | 40.0% | |
| AACCCAAACAATCCTCTTTG+CGG | - | chr4.3:24712213-24712232 | MS.gene31996:CDS | 40.0% | |
| AACTTGGGCTTAATGGTTCA+AGG | - | chr4.3:24710302-24710321 | MS.gene31996:CDS | 40.0% | |
| AATTGACGATGCAACTTTCC+AGG | - | chr4.3:24711297-24711316 | MS.gene31996:intron | 40.0% | |
| ACAATCGCACAACCGAAAAA+AGG | + | chr4.3:24710853-24710872 | None:intergenic | 40.0% | |
| ACATGGTAATTCCCATACAG+TGG | + | chr4.3:24711117-24711136 | None:intergenic | 40.0% | |
| AGAAAGTAGATGAGAGACAG+AGG | + | chr4.3:24710001-24710020 | None:intergenic | 40.0% | |
| CCTTCGGTTCCAAATTATGT+GGG | + | chr4.3:24710435-24710454 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAAGCA+AGG | - | chr4.3:24711764-24711783 | MS.gene31996:intron | 40.0% | |
| CTTGTCATCCAATCAGGAAA+TGG | + | chr4.3:24711644-24711663 | None:intergenic | 40.0% | |
| GCTATAAAGTCTACTCCAGA+TGG | + | chr4.3:24712157-24712176 | None:intergenic | 40.0% | |
| GGAAATTATGAGCCAAACCA+AGG | + | chr4.3:24710978-24710997 | None:intergenic | 40.0% | |
| GGAGTAATCCATTTCCTGAT+TGG | - | chr4.3:24711633-24711652 | MS.gene31996:intron | 40.0% | |
| TACTCCAGATGGAATACACA+TGG | + | chr4.3:24712146-24712165 | None:intergenic | 40.0% | |
| TATACCATGCCAGGATGAAA+TGG | + | chr4.3:24711014-24711033 | None:intergenic | 40.0% | |
| TATGGTCCTCTCAAGATATC+AGG | + | chr4.3:24710465-24710484 | None:intergenic | 40.0% | |
| TCCTTCGGTTCCAAATTATG+TGG | + | chr4.3:24710436-24710455 | None:intergenic | 40.0% | |
| TGAAACTTCTCGAATGCTGA+AGG | - | chr4.3:24711961-24711980 | MS.gene31996:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | + | chr4.3:24711594-24711613 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | - | chr4.3:24712012-24712031 | MS.gene31996:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr4.3:24711524-24711543 | MS.gene31996:intron | 40.0% | |
| TGGTGAGAGAAACTTTCGTT+TGG | + | chr4.3:24709819-24709838 | None:intergenic | 40.0% | |
| ! | ATGGGCTAACCCACATAATT+TGG | - | chr4.3:24710423-24710442 | MS.gene31996:CDS | 40.0% |
| ! | CATGTGGGTTATTTGATAGC+GGG | - | chr4.3:24710677-24710696 | MS.gene31996:intron | 40.0% |
| ! | CTCAAAGATGCTACTTCTTC+CGG | - | chr4.3:24710027-24710046 | MS.gene31996:CDS | 40.0% |
| ! | CTCTATTACTAGGAAGCATG+TGG | + | chr4.3:24711892-24711911 | None:intergenic | 40.0% |
| ! | GACAGACCATCTTTTGCATT+TGG | + | chr4.3:24711827-24711846 | None:intergenic | 40.0% |
| ! | GCATGTGGGTTATTTGATAG+CGG | - | chr4.3:24710676-24710695 | MS.gene31996:intron | 40.0% |
| !! | AAAATGGTGGACTCACTTGA+AGG | - | chr4.3:24712025-24712044 | MS.gene31996:CDS | 40.0% |
| !! | CTAGGTTGGTATCACAAACT+TGG | - | chr4.3:24710286-24710305 | MS.gene31996:CDS | 40.0% |
| !! | GATCAGTTGATTTGAAACGG+AGG | + | chr4.3:24709969-24709988 | None:intergenic | 40.0% |
| ACCCAAACAATCCTCTTTGC+GGG | - | chr4.3:24712214-24712233 | MS.gene31996:CDS | 45.0% | |
| ACTTTGTGGTATACCATGCC+AGG | + | chr4.3:24711023-24711042 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGAGACAA+TGG | + | chr4.3:24709892-24709911 | None:intergenic | 45.0% | |
| ATTTAGTAGCCAACACCACG+AGG | - | chr4.3:24710533-24710552 | MS.gene31996:CDS | 45.0% | |
| CCAACTCGCACTCTATTACT+AGG | + | chr4.3:24711902-24711921 | None:intergenic | 45.0% | |
| CCTAGTAATAGAGTGCGAGT+TGG | - | chr4.3:24711899-24711918 | MS.gene31996:CDS | 45.0% | |
| CGGAAGAAGTAGCATCTTTG+AGG | + | chr4.3:24710029-24710048 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCA+TGG | - | chr4.3:24711007-24711026 | MS.gene31996:intron | 45.0% | |
| GAAGAGGAAGAAAGACTTCC+TGG | + | chr4.3:24711318-24711337 | None:intergenic | 45.0% | |
| GCTTCTCCAAGAGAGTTAGT+AGG | - | chr4.3:24711143-24711162 | MS.gene31996:intron | 45.0% | |
| GGAGAAAAGATGATTGGCGA+TGG | + | chr4.3:24709839-24709858 | None:intergenic | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | + | chr4.3:24712004-24712023 | None:intergenic | 45.0% | |
| TCCCGCAAAGAGGATTGTTT+GGG | + | chr4.3:24712218-24712237 | None:intergenic | 45.0% | |
| TCTCGAATGCTGAAGGATCT+AGG | - | chr4.3:24711968-24711987 | MS.gene31996:CDS | 45.0% | |
| ! | AAAGATGCTACTTCTTCCGG+TGG | - | chr4.3:24710030-24710049 | MS.gene31996:CDS | 45.0% |
| ! | AGTAATAGAGTGCGAGTTGG+TGG | - | chr4.3:24711902-24711921 | MS.gene31996:CDS | 45.0% |
| ! | CCCACATAATTTGGAACCGA+AGG | - | chr4.3:24710432-24710451 | MS.gene31996:CDS | 45.0% |
| ! | CTTGGAGAAGCATGTCTACA+TGG | + | chr4.3:24711134-24711153 | None:intergenic | 45.0% |
| ! | TACTAGGAAGCATGTGGTCT+AGG | + | chr4.3:24711886-24711905 | None:intergenic | 45.0% |
| ! | TCTGTCAGCTTTGGTTGAGA+AGG | - | chr4.3:24711841-24711860 | MS.gene31996:intron | 45.0% |
| !! | AATAACCACATGGGTTAGGC+TGG | + | chr4.3:24710507-24710526 | None:intergenic | 45.0% |
| !! | ATCAAGGTTGGTGGTCATGA+AGG | + | chr4.3:24711711-24711730 | None:intergenic | 45.0% |
| !! | TCAAGGTTGGTGGTCATGAA+GGG | + | chr4.3:24711710-24711729 | None:intergenic | 45.0% |
| CGATGATGCTGAGCACAACT+TGG | + | chr4.3:24709903-24709922 | None:intergenic | 50.0% | |
| GGTGTAGGGATCGTGAAGTA+TGG | + | chr4.3:24710483-24710502 | None:intergenic | 50.0% | |
| GTCCCGCAAAGAGGATTGTT+TGG | + | chr4.3:24712219-24712238 | None:intergenic | 50.0% | |
| GTGGCCATGTGTATTCCATC+TGG | - | chr4.3:24712139-24712158 | MS.gene31996:CDS | 50.0% | |
| TCTGAATGGCAGCTCAGTCA+AGG | - | chr4.3:24711682-24711701 | MS.gene31996:intron | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | + | chr4.3:24711682-24711701 | None:intergenic | 50.0% | |
| ! | AAGTTGTCGACTGACCCTTG+AGG | + | chr4.3:24711569-24711588 | None:intergenic | 50.0% |
| ! | GTCAGCTTTGGTTGAGAAGG+TGG | - | chr4.3:24711844-24711863 | MS.gene31996:intron | 50.0% |
| !! | ATCATCGCTGCTGGTTCTGA+GGG | - | chr4.3:24709916-24709935 | MS.gene31996:CDS | 50.0% |
| AAACACCGTCGACGAAGGAG+AGG | + | chr4.3:24710062-24710081 | None:intergenic | 55.0% | |
| TCTCCTTCGTCGACGGTGTT+TGG | - | chr4.3:24710061-24710080 | MS.gene31996:CDS | 55.0% | |
| TGAGCACTTGTCCCGCAAAG+AGG | + | chr4.3:24712228-24712247 | None:intergenic | 55.0% | |
| ! | TGGGTTAGGCTGGTGGTGTA+GGG | + | chr4.3:24710497-24710516 | None:intergenic | 55.0% |
| !! | AACCACATGGGTTAGGCTGG+TGG | + | chr4.3:24710504-24710523 | None:intergenic | 55.0% |
| !! | ATGGGTTAGCCTCGTGGTGT+TGG | + | chr4.3:24710545-24710564 | None:intergenic | 55.0% |
| !! | ATGGGTTAGGCTGGTGGTGT+AGG | + | chr4.3:24710498-24710517 | None:intergenic | 55.0% |
| !! | CATCATCGCTGCTGGTTCTG+AGG | - | chr4.3:24709915-24709934 | MS.gene31996:CDS | 55.0% |
| !! | GTAGAGATGGGTTAGCCTCG+TGG | + | chr4.3:24710551-24710570 | None:intergenic | 55.0% |
| ACTGTAGCTGCTGCAGCCAG+TGG | - | chr4.3:24712109-24712128 | MS.gene31996:CDS | 60.0% | |
| CACCACCAGCCTAACCCATG+TGG | - | chr4.3:24710499-24710518 | MS.gene31996:CDS | 60.0% | |
| CAGCCAAACACCGTCGACGA+AGG | + | chr4.3:24710067-24710086 | None:intergenic | 60.0% | |
| CATGGCCACAAGTGCACCAC+TGG | + | chr4.3:24712128-24712147 | None:intergenic | 60.0% | |
| CCTCACCTCTCCTTCGTCGA+CGG | - | chr4.3:24710054-24710073 | MS.gene31996:CDS | 60.0% | |
| CTTCGTCGACGGTGTTTGGC+TGG | - | chr4.3:24710065-24710084 | MS.gene31996:CDS | 60.0% | |
| GAAGGAGAGGTGAGGACCAC+CGG | + | chr4.3:24710049-24710068 | None:intergenic | 60.0% | |
| GTGCTCAGCATCATCGCTGC+TGG | - | chr4.3:24709907-24709926 | MS.gene31996:CDS | 60.0% | |
| TGCAGCCAGTGGTGCACTTG+TGG | - | chr4.3:24712120-24712139 | MS.gene31996:CDS | 60.0% | |
| CCGTCGACGAAGGAGAGGTG+AGG | + | chr4.3:24710057-24710076 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24709784 | 24712264 | 24709784 | ID=MS.gene31996 |
| chr4.3 | mRNA | 24709784 | 24712264 | 24709784 | ID=MS.gene31996.t1;Parent=MS.gene31996 |
| chr4.3 | exon | 24711872 | 24712264 | 24711872 | ID=MS.gene31996.t1.exon1;Parent=MS.gene31996.t1 |
| chr4.3 | CDS | 24711872 | 24712264 | 24711872 | ID=cds.MS.gene31996.t1;Parent=MS.gene31996.t1 |
| chr4.3 | exon | 24709784 | 24710554 | 24709784 | ID=MS.gene31996.t1.exon2;Parent=MS.gene31996.t1 |
| chr4.3 | CDS | 24709784 | 24710554 | 24709784 | ID=cds.MS.gene31996.t1;Parent=MS.gene31996.t1 |
| Gene Sequence |
| Protein sequence |
