Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31997.t1 | XP_024636466.1 | 90.3 | 372 | 36 | 0 | 15 | 386 | 13 | 384 | 2.80E-188 | 667.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31997.t1 | Q9S7T8 | 51.0 | 386 | 182 | 4 | 7 | 385 | 5 | 390 | 2.1e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31997.t1 | A0A072UMV3 | 90.0 | 361 | 36 | 0 | 26 | 386 | 8 | 368 | 1.6e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31997 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene31997 | PPI |
| MS.gene031697 | MS.gene31997 | PPI |
| MS.gene31997 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene31997 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31997.t1 | MTR_4g088525 | 90.028 | 361 | 36 | 0 | 26 | 386 | 8 | 368 | 0.0 | 669 |
| MS.gene31997.t1 | MTR_8g027395 | 73.506 | 385 | 102 | 0 | 2 | 386 | 12 | 396 | 0.0 | 580 |
| MS.gene31997.t1 | MTR_8g027420 | 72.987 | 385 | 93 | 1 | 2 | 386 | 1 | 374 | 0.0 | 559 |
| MS.gene31997.t1 | MTR_4g088535 | 75.131 | 382 | 79 | 2 | 1 | 382 | 1 | 366 | 0.0 | 547 |
| MS.gene31997.t1 | MTR_3g101010 | 69.271 | 384 | 114 | 1 | 7 | 386 | 5 | 388 | 0.0 | 514 |
| MS.gene31997.t1 | MTR_3g018740 | 68.848 | 382 | 116 | 2 | 7 | 385 | 5 | 386 | 0.0 | 512 |
| MS.gene31997.t1 | MTR_4g045707 | 68.325 | 382 | 119 | 2 | 7 | 386 | 6 | 387 | 0.0 | 509 |
| MS.gene31997.t1 | MTR_3g101030 | 64.736 | 397 | 116 | 6 | 12 | 386 | 34 | 428 | 7.44e-171 | 484 |
| MS.gene31997.t1 | MTR_8g461160 | 62.791 | 387 | 136 | 2 | 7 | 385 | 6 | 392 | 1.35e-164 | 467 |
| MS.gene31997.t1 | MTR_3g048000 | 61.440 | 389 | 129 | 4 | 2 | 386 | 20 | 391 | 3.02e-164 | 466 |
| MS.gene31997.t1 | MTR_3g101180 | 62.690 | 394 | 133 | 4 | 7 | 386 | 6 | 399 | 7.37e-164 | 465 |
| MS.gene31997.t1 | MTR_3g101130 | 61.480 | 392 | 140 | 4 | 2 | 386 | 1 | 388 | 2.75e-162 | 461 |
| MS.gene31997.t1 | MTR_2g045980 | 62.857 | 385 | 134 | 3 | 7 | 385 | 5 | 386 | 4.09e-162 | 460 |
| MS.gene31997.t1 | MTR_2g046030 | 62.338 | 385 | 136 | 3 | 7 | 385 | 5 | 386 | 2.80e-161 | 458 |
| MS.gene31997.t1 | MTR_7g050810 | 59.432 | 387 | 149 | 2 | 7 | 385 | 16 | 402 | 3.54e-158 | 451 |
| MS.gene31997.t1 | MTR_7g451890 | 58.398 | 387 | 153 | 2 | 7 | 385 | 14 | 400 | 4.35e-157 | 448 |
| MS.gene31997.t1 | MTR_7g047780 | 57.881 | 387 | 155 | 2 | 7 | 385 | 14 | 400 | 4.41e-155 | 443 |
| MS.gene31997.t1 | MTR_7g050750 | 57.623 | 387 | 156 | 2 | 7 | 385 | 8 | 394 | 2.20e-154 | 441 |
| MS.gene31997.t1 | MTR_3g101050 | 60.052 | 383 | 128 | 6 | 11 | 386 | 33 | 397 | 9.24e-147 | 421 |
| MS.gene31997.t1 | MTR_3g015620 | 58.398 | 387 | 129 | 5 | 7 | 385 | 16 | 378 | 1.62e-145 | 417 |
| MS.gene31997.t1 | MTR_3g102920 | 56.955 | 381 | 120 | 6 | 14 | 386 | 65 | 409 | 1.10e-132 | 386 |
| MS.gene31997.t1 | MTR_3g101200 | 53.886 | 386 | 145 | 5 | 7 | 385 | 31 | 390 | 2.98e-125 | 367 |
| MS.gene31997.t1 | MTR_3g101190 | 53.056 | 360 | 106 | 3 | 29 | 386 | 13 | 311 | 4.46e-116 | 340 |
| MS.gene31997.t1 | MTR_3g100995 | 66.008 | 253 | 81 | 2 | 136 | 385 | 12 | 262 | 1.63e-115 | 337 |
| MS.gene31997.t1 | MTR_3g018747 | 64.865 | 259 | 73 | 3 | 131 | 385 | 9 | 253 | 1.89e-107 | 316 |
| MS.gene31997.t1 | MTR_3g100010 | 54.808 | 312 | 93 | 3 | 30 | 308 | 40 | 336 | 1.73e-106 | 317 |
| MS.gene31997.t1 | MTR_7g050830 | 53.247 | 308 | 111 | 3 | 13 | 298 | 22 | 318 | 4.24e-102 | 305 |
| MS.gene31997.t1 | MTR_3g015760 | 58.123 | 277 | 104 | 4 | 116 | 385 | 8 | 279 | 8.43e-100 | 298 |
| MS.gene31997.t1 | MTR_3g114310 | 41.495 | 388 | 208 | 10 | 12 | 384 | 24 | 407 | 2.11e-87 | 271 |
| MS.gene31997.t1 | MTR_3g100520 | 64.352 | 216 | 66 | 4 | 172 | 385 | 1 | 207 | 4.29e-87 | 263 |
| MS.gene31997.t1 | MTR_3g111160 | 66.995 | 203 | 64 | 2 | 187 | 386 | 17 | 219 | 1.16e-83 | 254 |
| MS.gene31997.t1 | MTR_3g101110 | 55.649 | 239 | 72 | 3 | 131 | 361 | 68 | 280 | 1.73e-80 | 248 |
| MS.gene31997.t1 | MTR_2g046410 | 62.500 | 216 | 72 | 3 | 176 | 385 | 135 | 347 | 3.39e-80 | 250 |
| MS.gene31997.t1 | MTR_3g099970 | 62.755 | 196 | 56 | 2 | 131 | 326 | 20 | 198 | 8.13e-78 | 238 |
| MS.gene31997.t1 | MTR_3g102870 | 68.323 | 161 | 51 | 0 | 194 | 354 | 1 | 161 | 3.21e-70 | 218 |
| MS.gene31997.t1 | MTR_3g101150 | 64.331 | 157 | 48 | 1 | 237 | 385 | 1 | 157 | 6.45e-62 | 196 |
| MS.gene31997.t1 | MTR_3g101020 | 55.435 | 184 | 53 | 2 | 205 | 385 | 1 | 158 | 1.16e-60 | 193 |
| MS.gene31997.t1 | MTR_3g111150 | 56.395 | 172 | 51 | 2 | 11 | 182 | 3 | 150 | 3.00e-57 | 184 |
| MS.gene31997.t1 | MTR_3g100990 | 66.923 | 130 | 43 | 0 | 5 | 134 | 3 | 132 | 4.37e-50 | 176 |
| MS.gene31997.t1 | MTR_4g093550 | 64.286 | 84 | 30 | 0 | 7 | 90 | 6 | 89 | 7.67e-29 | 108 |
| MS.gene31997.t1 | MTR_6g046890 | 55.814 | 86 | 33 | 1 | 15 | 95 | 7 | 92 | 1.10e-19 | 85.1 |
| MS.gene31997.t1 | MTR_3g101140 | 55.224 | 67 | 25 | 2 | 324 | 385 | 48 | 114 | 1.85e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31997.t1 | AT1G47710 | 51.036 | 386 | 182 | 4 | 7 | 385 | 5 | 390 | 1.49e-138 | 400 |
| MS.gene31997.t1 | AT1G47710 | 51.036 | 386 | 182 | 4 | 7 | 385 | 32 | 417 | 8.27e-138 | 399 |
| MS.gene31997.t1 | AT3G45220 | 46.094 | 384 | 195 | 4 | 11 | 384 | 9 | 390 | 2.50e-119 | 352 |
| MS.gene31997.t1 | AT2G25240 | 48.684 | 380 | 183 | 7 | 11 | 384 | 9 | 382 | 3.20e-119 | 351 |
| MS.gene31997.t1 | AT2G26390 | 45.337 | 386 | 191 | 8 | 11 | 384 | 9 | 386 | 2.86e-109 | 326 |
| MS.gene31997.t1 | AT1G62170 | 43.802 | 363 | 173 | 4 | 31 | 384 | 91 | 431 | 1.65e-98 | 300 |
| MS.gene31997.t1 | AT2G14540 | 44.186 | 387 | 185 | 6 | 7 | 384 | 33 | 397 | 3.05e-96 | 293 |
| MS.gene31997.t1 | AT1G64030 | 39.948 | 383 | 209 | 5 | 7 | 384 | 5 | 371 | 1.45e-92 | 283 |
| MS.gene31997.t1 | AT1G62170 | 40.152 | 396 | 173 | 5 | 31 | 384 | 91 | 464 | 2.64e-91 | 282 |
| MS.gene31997.t1 | AT2G35580 | 40.669 | 359 | 184 | 7 | 35 | 384 | 33 | 371 | 1.75e-81 | 254 |
| MS.gene31997.t1 | AT1G64010 | 46.759 | 216 | 91 | 4 | 172 | 384 | 1 | 195 | 7.03e-60 | 192 |
| MS.gene31997.t1 | AT1G64010 | 46.040 | 202 | 85 | 4 | 186 | 384 | 1 | 181 | 2.95e-53 | 175 |
| MS.gene31997.t1 | AT1G62160 | 39.796 | 196 | 94 | 5 | 194 | 384 | 42 | 218 | 3.60e-34 | 126 |
| MS.gene31997.t1 | AT1G63280 | 53.043 | 115 | 50 | 2 | 131 | 243 | 8 | 120 | 5.22e-32 | 117 |
| MS.gene31997.t1 | AT1G51330 | 52.632 | 95 | 45 | 0 | 130 | 224 | 30 | 124 | 9.12e-25 | 100 |
Find 60 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGAAGCTTGTGATCT+AGG | 0.286562 | 4.3:+24715966 | None:intergenic |
| CTAATTCTCGTACCTTGTTC+TGG | 0.293319 | 4.3:+24717164 | None:intergenic |
| ACCCAAACAATCCTCTTTGC+CGG | 0.332257 | 4.3:-24715635 | MS.gene31997:CDS |
| GTCCGGCAAAGAGGATTGTT+TGG | 0.343638 | 4.3:+24715633 | None:intergenic |
| AATAAATTGATTAAAGTTGC+TGG | 0.347376 | 4.3:+24716132 | None:intergenic |
| CTAGATGAAAATTTGAATCT+TGG | 0.350639 | 4.3:+24715914 | None:intergenic |
| TGAAGGAAGGTTGAGGAGAA+AGG | 0.364807 | 4.3:+24717236 | None:intergenic |
| TTCCTTTGAGAAAAGATGTT+TGG | 0.369733 | 4.3:+24717489 | None:intergenic |
| GTCAGCTTTGGTTGAAAAGA+TGG | 0.375437 | 4.3:-24716005 | MS.gene31997:CDS |
| GATGATCAGTGAATTTGAAT+TGG | 0.383441 | 4.3:+24717362 | None:intergenic |
| TCCGGCAAAGAGGATTGTTT+GGG | 0.390129 | 4.3:+24715634 | None:intergenic |
| CGATGATTGCAAGCACTACT+TGG | 0.408491 | 4.3:+24717431 | None:intergenic |
| AAAGATGTTTGGCGATAGTA+AGG | 0.422354 | 4.3:+24717500 | None:intergenic |
| AGCCCACAAATTCACTTCTC+TGG | 0.429438 | 4.3:+24716342 | None:intergenic |
| AGAAAGGAGTTGAGAGATGA+AGG | 0.430729 | 4.3:+24717333 | None:intergenic |
| GAAGGAAGGTTGAGGAGAAA+GGG | 0.432354 | 4.3:+24717237 | None:intergenic |
| TTTCTTCCAGATGCAAAAGA+TGG | 0.445112 | 4.3:-24716031 | MS.gene31997:CDS |
| TTTACCATGGGTAGATCAAC+CGG | 0.448059 | 4.3:-24715710 | MS.gene31997:CDS |
| AGACAAAGTGGCCTTGTAAT+CGG | 0.455993 | 4.3:+24717198 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+CGG | 0.466572 | 4.3:-24717415 | MS.gene31997:CDS |
| TTACTGAGCTTCCATTAAGA+AGG | 0.468069 | 4.3:+24716170 | None:intergenic |
| TTTATTGAAGTAAACGAGAA+AGG | 0.470403 | 4.3:-24715764 | MS.gene31997:CDS |
| ATTAAAGTTGCTGGTCATGA+AGG | 0.473995 | 4.3:+24716141 | None:intergenic |
| CGACCAGAGAAGTGAATTTG+TGG | 0.477436 | 4.3:-24716345 | MS.gene31997:CDS |
| AAGAGGGTTGAGCACTTGTC+CGG | 0.483867 | 4.3:+24715616 | None:intergenic |
| TTTCGTCAATAGTGTGTGGC+TGG | 0.484057 | 4.3:-24717266 | MS.gene31997:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 4.3:-24715824 | MS.gene31997:CDS |
| AAAAGATGGACTGTCAGCTT+TGG | 0.498213 | 4.3:-24716017 | MS.gene31997:CDS |
| CATGGTAAAATATGCAGTAC+TGG | 0.501847 | 4.3:+24715724 | None:intergenic |
| CTTCGTCTTCCTTATAAGCA+AGG | 0.506335 | 4.3:-24716085 | MS.gene31997:CDS |
| GATCAGTGAATTTGAATTGG+AGG | 0.510357 | 4.3:+24717365 | None:intergenic |
| GGTAGACACAATATGTTTGA+AGG | 0.513379 | 4.3:+24717219 | None:intergenic |
| ATCAGCTATAAAGTCTAGTC+CGG | 0.515418 | 4.3:+24715691 | None:intergenic |
| GTGCTTGCAATCATCGCTGC+TGG | 0.516685 | 4.3:-24717424 | MS.gene31997:CDS |
| AGAAAGGTAAAATCACTCCT+AGG | 0.522055 | 4.3:+24715864 | None:intergenic |
| GTTAAGATCACTCAGCAAAG+AGG | 0.525451 | 4.3:+24715599 | None:intergenic |
| TATTGTGTCTACCGATTACA+AGG | 0.526747 | 4.3:-24717209 | MS.gene31997:CDS |
| TCTTAATGGAAGCTCAGTAA+AGG | 0.530556 | 4.3:-24716167 | MS.gene31997:CDS |
| TGCATTAGCAAAGATGAGTC+GGG | 0.539519 | 4.3:+24716258 | None:intergenic |
| TGGGCTAGAAAAGAGACAAA+TGG | 0.545280 | 4.3:-24716325 | MS.gene31997:CDS |
| GTGCATTAGCAAAGATGAGT+CGG | 0.551044 | 4.3:+24716257 | None:intergenic |
| GACACAATATGTTTGAAGGA+AGG | 0.556394 | 4.3:+24717223 | None:intergenic |
| GACCAGAGAAGTGAATTTGT+GGG | 0.571030 | 4.3:-24716344 | MS.gene31997:CDS |
| TTAAGATCACTCAGCAAAGA+GGG | 0.579205 | 4.3:+24715600 | None:intergenic |
| TTCTGTTGACTTCCAGAACA+AGG | 0.579925 | 4.3:-24717176 | MS.gene31997:intron |
| ATATGTTTGAAGGAAGGTTG+AGG | 0.580003 | 4.3:+24717229 | None:intergenic |
| TTAAAGTTGCTGGTCATGAA+GGG | 0.586835 | 4.3:+24716142 | None:intergenic |
| TAGTAAGGGAAACTTTCGTA+TGG | 0.600455 | 4.3:+24717515 | None:intergenic |
| GAAAGGCACTAAAGCTGTTG+CGG | 0.603147 | 4.3:-24715747 | MS.gene31997:CDS |
| CGTCTTTGAAGATGACAGAA+AGG | 0.607495 | 4.3:+24717317 | None:intergenic |
| TGAGCACTTGTCCGGCAAAG+AGG | 0.610086 | 4.3:+24715624 | None:intergenic |
| TCTGATATGCTTAAAGACCT+AGG | 0.610586 | 4.3:-24715881 | MS.gene31997:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.618987 | 4.3:+24717390 | None:intergenic |
| AAGATGTTTGGCGATAGTAA+GGG | 0.635414 | 4.3:+24717501 | None:intergenic |
| AAGAGACGAGGACCACGGGA+AGG | 0.643910 | 4.3:+24717289 | None:intergenic |
| AGCACTACTTGGAGAGACAA+AGG | 0.653123 | 4.3:+24717442 | None:intergenic |
| GAAGTCAACAGAAGACAAAG+TGG | 0.672055 | 4.3:+24717186 | None:intergenic |
| TAGTCCGGTTGATCTACCCA+TGG | 0.686736 | 4.3:+24715706 | None:intergenic |
| ATAAGCAAGGAAAAGATGAG+CGG | 0.694027 | 4.3:-24716072 | MS.gene31997:CDS |
| AAAGACGCTACTCCTTCCCG+TGG | 0.697734 | 4.3:-24717301 | MS.gene31997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCTAATTAAAAATAAGAAA+GGG | + | chr4.3:24717494-24717513 | None:intergenic | 15.0% |
| !! | TCTCTAATTAAAAATAAGAA+AGG | + | chr4.3:24717495-24717514 | None:intergenic | 15.0% |
| !!! | TATTTTTTCGTCATATATTT+AGG | + | chr4.3:24716958-24716977 | None:intergenic | 15.0% |
| !! | AATAAATTGATTAAAGTTGC+TGG | + | chr4.3:24717028-24717047 | None:intergenic | 20.0% |
| !! | ATTAAAAAAATTGTTGCTCA+AGG | - | chr4.3:24716859-24716878 | MS.gene31997:intron | 20.0% |
| !! | ATTTGTAAATTTGATTGACA+TGG | - | chr4.3:24716771-24716790 | MS.gene31997:intron | 20.0% |
| !! | TATATGTCATTGTGTTATAA+TGG | - | chr4.3:24716158-24716177 | MS.gene31997:CDS | 20.0% |
| !! | TTAAAAAAATTGTTGCTCAA+GGG | - | chr4.3:24716860-24716879 | MS.gene31997:intron | 20.0% |
| !!! | GAGCAACAATTTTTTTAATA+AGG | + | chr4.3:24716858-24716877 | None:intergenic | 20.0% |
| ! | CTAGATGAAAATTTGAATCT+TGG | + | chr4.3:24717246-24717265 | None:intergenic | 25.0% |
| ! | CTTCATGAATAACATTCAAA+AGG | - | chr4.3:24716396-24716415 | MS.gene31997:intron | 25.0% |
| ! | TATAAACGGTGTTTGATTAA+TGG | - | chr4.3:24716245-24716264 | MS.gene31997:CDS | 25.0% |
| ! | TTAATCTTTACATTTCATCC+TGG | - | chr4.3:24716341-24716360 | MS.gene31997:CDS | 25.0% |
| ! | TTGAATGTTATTCATGAAGA+AGG | + | chr4.3:24716395-24716414 | None:intergenic | 25.0% |
| ! | TTTATTGAAGTAAACGAGAA+AGG | - | chr4.3:24717393-24717412 | MS.gene31997:CDS | 25.0% |
| ! | TTTGATTAATGGCTATAATG+TGG | - | chr4.3:24716256-24716275 | MS.gene31997:CDS | 25.0% |
| !! | AGTCTAATTTTCACACATTA+CGG | + | chr4.3:24716683-24716702 | None:intergenic | 25.0% |
| !! | CAAGATTCAAATTTTCATCT+AGG | - | chr4.3:24717244-24717263 | MS.gene31997:CDS | 25.0% |
| !! | CAATTTATTAGAGCTTTTGA+CGG | - | chr4.3:24717039-24717058 | MS.gene31997:intron | 25.0% |
| !! | TATGATTTTCACCTTCTTAA+TGG | - | chr4.3:24716976-24716995 | MS.gene31997:intron | 25.0% |
| !!! | GCTAATGCACTATATTTTAA+AGG | - | chr4.3:24716913-24716932 | MS.gene31997:intron | 25.0% |
| !!! | TTGTTTGTTATTTCACACTT+AGG | - | chr4.3:24716297-24716316 | MS.gene31997:CDS | 25.0% |
| AACTCTGTGTTTATCTAGAA+GGG | - | chr4.3:24716499-24716518 | MS.gene31997:intron | 30.0% | |
| GATGATCAGTGAATTTGAAT+TGG | + | chr4.3:24715798-24715817 | None:intergenic | 30.0% | |
| GGATATGATAGAAAACAACA+AGG | + | chr4.3:24716647-24716666 | None:intergenic | 30.0% | |
| TCTTGCACTTGCTTTATAAA+CGG | - | chr4.3:24716231-24716250 | MS.gene31997:CDS | 30.0% | |
| ! | AATGTGGTTTTTATGGAACT+TGG | - | chr4.3:24716272-24716291 | MS.gene31997:CDS | 30.0% |
| ! | AGTACTGCATATTTTACCAT+GGG | - | chr4.3:24717435-24717454 | MS.gene31997:CDS | 30.0% |
| ! | TAACATTCAAAAGGCATGAA+TGG | - | chr4.3:24716405-24716424 | MS.gene31997:intron | 30.0% |
| ! | TCATCTTTTCCTTGCTTATA+AGG | + | chr4.3:24717084-24717103 | None:intergenic | 30.0% |
| ! | TGATTTTACCTTTCTCTTCT+GGG | - | chr4.3:24717301-24717320 | MS.gene31997:CDS | 30.0% |
| ! | TGGCTATAATGTGGTTTTTA+TGG | - | chr4.3:24716265-24716284 | MS.gene31997:CDS | 30.0% |
| ! | TTCCTTTGAGAAAAGATGTT+TGG | + | chr4.3:24715671-24715690 | None:intergenic | 30.0% |
| !! | CACTATATTTTAAAGGAGCA+TGG | - | chr4.3:24716920-24716939 | MS.gene31997:intron | 30.0% |
| !!! | TTTGATTGACATGGTTTTGA+AGG | - | chr4.3:24716780-24716799 | MS.gene31997:intron | 30.0% |
| AAAGATGTTTGGCGATAGTA+AGG | + | chr4.3:24715660-24715679 | None:intergenic | 35.0% | |
| AAATCAAGAAGCTTATGAGC+CGG | + | chr4.3:24716323-24716342 | None:intergenic | 35.0% | |
| AAGATGTTTGGCGATAGTAA+GGG | + | chr4.3:24715659-24715678 | None:intergenic | 35.0% | |
| AGAAAGGTAAAATCACTCCT+AGG | + | chr4.3:24717296-24717315 | None:intergenic | 35.0% | |
| ATAAGCAAGGAAAAGATGAG+CGG | - | chr4.3:24717085-24717104 | MS.gene31997:intron | 35.0% | |
| ATATGTTTGAAGGAAGGTTG+AGG | + | chr4.3:24715931-24715950 | None:intergenic | 35.0% | |
| ATCAGCTATAAAGTCTAGTC+CGG | + | chr4.3:24717469-24717488 | None:intergenic | 35.0% | |
| ATTAAAGTTGCTGGTCATGA+AGG | + | chr4.3:24717019-24717038 | None:intergenic | 35.0% | |
| CAACTCTGTGTTTATCTAGA+AGG | - | chr4.3:24716498-24716517 | MS.gene31997:intron | 35.0% | |
| CATGGTAAAATATGCAGTAC+TGG | + | chr4.3:24717436-24717455 | None:intergenic | 35.0% | |
| GACACAATATGTTTGAAGGA+AGG | + | chr4.3:24715937-24715956 | None:intergenic | 35.0% | |
| GATCAGTGAATTTGAATTGG+AGG | + | chr4.3:24715795-24715814 | None:intergenic | 35.0% | |
| GGTAGACACAATATGTTTGA+AGG | + | chr4.3:24715941-24715960 | None:intergenic | 35.0% | |
| TAGTAAGGGAAACTTTCGTA+TGG | + | chr4.3:24715645-24715664 | None:intergenic | 35.0% | |
| TATAAGGAAGCTTGTGATCT+AGG | + | chr4.3:24717194-24717213 | None:intergenic | 35.0% | |
| TCTGATATGCTTAAAGACCT+AGG | - | chr4.3:24717276-24717295 | MS.gene31997:CDS | 35.0% | |
| TCTTAATGGAAGCTCAGTAA+AGG | - | chr4.3:24716990-24717009 | MS.gene31997:intron | 35.0% | |
| TGTGTTTATCTAGAAGGGAA+AGG | - | chr4.3:24716504-24716523 | MS.gene31997:intron | 35.0% | |
| TTAAAGTTGCTGGTCATGAA+GGG | + | chr4.3:24717018-24717037 | None:intergenic | 35.0% | |
| TTACTGAGCTTCCATTAAGA+AGG | + | chr4.3:24716990-24717009 | None:intergenic | 35.0% | |
| TTTCTTCCAGATGCAAAAGA+TGG | - | chr4.3:24717126-24717145 | MS.gene31997:intron | 35.0% | |
| ! | ATTTTACCTTTCTCTTCTGG+GGG | - | chr4.3:24717303-24717322 | MS.gene31997:CDS | 35.0% |
| ! | CAAAGTCCTACCAATTCTTT+TGG | + | chr4.3:24716472-24716491 | None:intergenic | 35.0% |
| ! | CAGTACTGCATATTTTACCA+TGG | - | chr4.3:24717434-24717453 | MS.gene31997:CDS | 35.0% |
| ! | CATTACGGTGCTAAATTAGT+TGG | + | chr4.3:24716668-24716687 | None:intergenic | 35.0% |
| ! | CCTTATAAAAAAGTGCGAGT+AGG | - | chr4.3:24717207-24717226 | MS.gene31997:CDS | 35.0% |
| ! | GATTTTACCTTTCTCTTCTG+GGG | - | chr4.3:24717302-24717321 | MS.gene31997:CDS | 35.0% |
| ! | GTGATTTTACCTTTCTCTTC+TGG | - | chr4.3:24717300-24717319 | MS.gene31997:CDS | 35.0% |
| ! | TATAAAAAAGTGCGAGTAGG+AGG | - | chr4.3:24717210-24717229 | MS.gene31997:CDS | 35.0% |
| ! | TATTGTGTCTACCGATTACA+AGG | - | chr4.3:24715948-24715967 | MS.gene31997:CDS | 35.0% |
| !! | CTACCAATTCTTTTGGAGAA+GGG | + | chr4.3:24716465-24716484 | None:intergenic | 35.0% |
| !! | TACCAATTCTTTTGGAGAAG+GGG | + | chr4.3:24716464-24716483 | None:intergenic | 35.0% |
| !! | TCTTTTTCGTCAATAGTGTG+TGG | - | chr4.3:24715887-24715906 | MS.gene31997:CDS | 35.0% |
| !! | TTGTTATTTCACACTTAGGC+CGG | - | chr4.3:24716301-24716320 | MS.gene31997:CDS | 35.0% |
| !!! | CCTACTCGCACTTTTTTATA+AGG | + | chr4.3:24717210-24717229 | None:intergenic | 35.0% |
| AGAAAGGAGTTGAGAGATGA+AGG | + | chr4.3:24715827-24715846 | None:intergenic | 40.0% | |
| ATCCTGGCATACAGTAAAGT+AGG | - | chr4.3:24716357-24716376 | MS.gene31997:CDS | 40.0% | |
| CCTTCTCCAAAAGAATTGGT+AGG | - | chr4.3:24716463-24716482 | MS.gene31997:intron | 40.0% | |
| CTAATTCTCGTACCTTGTTC+TGG | + | chr4.3:24715996-24716015 | None:intergenic | 40.0% | |
| CTATTGACGAAAAAGAGACG+AGG | + | chr4.3:24715883-24715902 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAAGCA+AGG | - | chr4.3:24717072-24717091 | MS.gene31997:intron | 40.0% | |
| GAAGTCAACAGAAGACAAAG+TGG | + | chr4.3:24715974-24715993 | None:intergenic | 40.0% | |
| GACCAGAGAAGTGAATTTGT+GGG | - | chr4.3:24716813-24716832 | MS.gene31997:intron | 40.0% | |
| GTGCATTAGCAAAGATGAGT+CGG | + | chr4.3:24716903-24716922 | None:intergenic | 40.0% | |
| TCCTGGCATACAGTAAAGTA+GGG | - | chr4.3:24716358-24716377 | MS.gene31997:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+GGG | + | chr4.3:24716902-24716921 | None:intergenic | 40.0% | |
| TTCCCCTTCTCCAAAAGAAT+TGG | - | chr4.3:24716459-24716478 | MS.gene31997:intron | 40.0% | |
| TTTACCATGGGTAGATCAAC+CGG | - | chr4.3:24717447-24717466 | MS.gene31997:CDS | 40.0% | |
| ! | CGCCAAACATCTTTTCTCAA+AGG | - | chr4.3:24715666-24715685 | MS.gene31997:CDS | 40.0% |
| ! | CGTCTTTGAAGATGACAGAA+AGG | + | chr4.3:24715843-24715862 | None:intergenic | 40.0% |
| ! | GTCAGCTTTGGTTGAAAAGA+TGG | - | chr4.3:24717152-24717171 | MS.gene31997:intron | 40.0% |
| ! | TGGGCTAGAAAAGAGACAAA+TGG | - | chr4.3:24716832-24716851 | MS.gene31997:intron | 40.0% |
| ! | TTCTGGGGGTTTGACAAAAA+TGG | - | chr4.3:24717317-24717336 | MS.gene31997:CDS | 40.0% |
| !! | AAAAGATGGACTGTCAGCTT+TGG | - | chr4.3:24717140-24717159 | MS.gene31997:intron | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | - | chr4.3:24717333-24717352 | MS.gene31997:CDS | 40.0% |
| !! | AGACAAAGTGGCCTTGTAAT+CGG | + | chr4.3:24715962-24715981 | None:intergenic | 40.0% |
| !! | CCTACCAATTCTTTTGGAGA+AGG | + | chr4.3:24716466-24716485 | None:intergenic | 40.0% |
| !! | TTCTGTTGACTTCCAGAACA+AGG | - | chr4.3:24715981-24716000 | MS.gene31997:CDS | 40.0% |
| ACCCAAACAATCCTCTTTGC+CGG | - | chr4.3:24717522-24717541 | MS.gene31997:CDS | 45.0% | |
| ACCCTACTTTACTGTATGCC+AGG | + | chr4.3:24716362-24716381 | None:intergenic | 45.0% | |
| AGCACTACTTGGAGAGACAA+AGG | + | chr4.3:24715718-24715737 | None:intergenic | 45.0% | |
| AGCCCACAAATTCACTTCTC+TGG | + | chr4.3:24716818-24716837 | None:intergenic | 45.0% | |
| CGACCAGAGAAGTGAATTTG+TGG | - | chr4.3:24716812-24716831 | MS.gene31997:intron | 45.0% | |
| CGATGATTGCAAGCACTACT+TGG | + | chr4.3:24715729-24715748 | None:intergenic | 45.0% | |
| GAAGGAAGGTTGAGGAGAAA+GGG | + | chr4.3:24715923-24715942 | None:intergenic | 45.0% | |
| TCCGGCAAAGAGGATTGTTT+GGG | + | chr4.3:24717526-24717545 | None:intergenic | 45.0% | |
| TGAAGGAAGGTTGAGGAGAA+AGG | + | chr4.3:24715924-24715943 | None:intergenic | 45.0% | |
| TGGGGGTTTGACAAAAATGG+TGG | - | chr4.3:24717320-24717339 | MS.gene31997:CDS | 45.0% | |
| TTTCGTCAATAGTGTGTGGC+TGG | - | chr4.3:24715891-24715910 | MS.gene31997:CDS | 45.0% | |
| ! | GACAGTCCATCTTTTGCATC+TGG | + | chr4.3:24717135-24717154 | None:intergenic | 45.0% |
| !! | GAAAGGCACTAAAGCTGTTG+CGG | - | chr4.3:24717410-24717429 | MS.gene31997:CDS | 45.0% |
| AAGAGGGTTGAGCACTTGTC+CGG | + | chr4.3:24717544-24717563 | None:intergenic | 50.0% | |
| CGAAAAAGAGACGAGGACCA+CGG | + | chr4.3:24715876-24715895 | None:intergenic | 50.0% | |
| GAAAAAGAGACGAGGACCAC+GGG | + | chr4.3:24715875-24715894 | None:intergenic | 50.0% | |
| GTCAAACCCCCAGAAGAGAA+AGG | + | chr4.3:24717312-24717331 | None:intergenic | 50.0% | |
| GTCCGGCAAAGAGGATTGTT+TGG | + | chr4.3:24717527-24717546 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | + | chr4.3:24715770-24715789 | None:intergenic | 50.0% | |
| TAGTCCGGTTGATCTACCCA+TGG | + | chr4.3:24717454-24717473 | None:intergenic | 50.0% | |
| AAAGACGCTACTCCTTCCCG+TGG | - | chr4.3:24715856-24715875 | MS.gene31997:CDS | 55.0% | |
| GTGCTTGCAATCATCGCTGC+TGG | - | chr4.3:24715733-24715752 | MS.gene31997:CDS | 55.0% | |
| TGAGCACTTGTCCGGCAAAG+AGG | + | chr4.3:24717536-24717555 | None:intergenic | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+CGG | - | chr4.3:24715742-24715761 | MS.gene31997:CDS | 55.0% |
| AAGAGACGAGGACCACGGGA+AGG | + | chr4.3:24715871-24715890 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24715610 | 24717569 | 24715610 | ID=MS.gene31997 |
| chr4.3 | mRNA | 24715610 | 24717569 | 24715610 | ID=MS.gene31997.t1;Parent=MS.gene31997 |
| chr4.3 | exon | 24717177 | 24717569 | 24717177 | ID=MS.gene31997.t1.exon1;Parent=MS.gene31997.t1 |
| chr4.3 | CDS | 24717177 | 24717569 | 24717177 | ID=cds.MS.gene31997.t1;Parent=MS.gene31997.t1 |
| chr4.3 | exon | 24715610 | 24716377 | 24715610 | ID=MS.gene31997.t1.exon2;Parent=MS.gene31997.t1 |
| chr4.3 | CDS | 24715610 | 24716377 | 24715610 | ID=cds.MS.gene31997.t1;Parent=MS.gene31997.t1 |
| Gene Sequence |
| Protein sequence |
