Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32287.t1 | XP_013445455.1 | 92.2 | 395 | 28 | 2 | 1 | 393 | 1 | 394 | 3.80E-201 | 710.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32287.t1 | Q9S7T8 | 50.9 | 393 | 179 | 5 | 6 | 391 | 5 | 390 | 1.4e-106 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32287.t1 | A0A072TQK6 | 92.2 | 395 | 28 | 2 | 1 | 393 | 1 | 394 | 2.7e-201 | 710.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32287 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene32287 | PPI |
| MS.gene32287 | MS.gene065944 | PPI |
| MS.gene031697 | MS.gene32287 | PPI |
| MS.gene065945 | MS.gene32287 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32287.t1 | MTR_8g461160 | 92.152 | 395 | 28 | 2 | 1 | 393 | 1 | 394 | 0.0 | 712 |
| MS.gene32287.t1 | MTR_3g101180 | 70.500 | 400 | 111 | 3 | 1 | 393 | 1 | 400 | 0.0 | 558 |
| MS.gene32287.t1 | MTR_3g101010 | 68.653 | 386 | 118 | 2 | 6 | 391 | 5 | 387 | 0.0 | 526 |
| MS.gene32287.t1 | MTR_7g451890 | 66.071 | 392 | 132 | 1 | 2 | 392 | 10 | 401 | 0.0 | 512 |
| MS.gene32287.t1 | MTR_7g047780 | 65.306 | 392 | 135 | 1 | 2 | 392 | 10 | 401 | 0.0 | 511 |
| MS.gene32287.t1 | MTR_3g018740 | 67.095 | 389 | 122 | 3 | 6 | 393 | 5 | 388 | 0.0 | 510 |
| MS.gene32287.t1 | MTR_7g050750 | 65.816 | 392 | 133 | 1 | 2 | 392 | 4 | 395 | 1.38e-180 | 508 |
| MS.gene32287.t1 | MTR_4g045707 | 64.394 | 396 | 126 | 3 | 1 | 391 | 1 | 386 | 7.60e-180 | 505 |
| MS.gene32287.t1 | MTR_7g050810 | 64.213 | 394 | 136 | 2 | 2 | 392 | 12 | 403 | 1.36e-175 | 495 |
| MS.gene32287.t1 | MTR_8g027395 | 63.472 | 386 | 134 | 2 | 6 | 391 | 17 | 395 | 2.70e-172 | 486 |
| MS.gene32287.t1 | MTR_3g101130 | 61.637 | 391 | 146 | 1 | 1 | 391 | 1 | 387 | 4.96e-172 | 486 |
| MS.gene32287.t1 | MTR_3g101030 | 62.217 | 397 | 129 | 5 | 12 | 391 | 35 | 427 | 2.03e-171 | 486 |
| MS.gene32287.t1 | MTR_3g048000 | 61.697 | 389 | 125 | 4 | 4 | 391 | 25 | 390 | 1.27e-163 | 464 |
| MS.gene32287.t1 | MTR_8g027420 | 60.881 | 386 | 133 | 3 | 6 | 391 | 6 | 373 | 4.21e-161 | 457 |
| MS.gene32287.t1 | MTR_4g088525 | 59.892 | 369 | 143 | 1 | 23 | 391 | 4 | 367 | 2.78e-159 | 452 |
| MS.gene32287.t1 | MTR_3g015620 | 60.406 | 394 | 119 | 6 | 6 | 392 | 16 | 379 | 4.71e-155 | 442 |
| MS.gene32287.t1 | MTR_3g101050 | 60.102 | 391 | 136 | 5 | 4 | 393 | 27 | 398 | 2.43e-153 | 439 |
| MS.gene32287.t1 | MTR_2g046030 | 58.163 | 392 | 152 | 5 | 6 | 393 | 5 | 388 | 2.39e-152 | 436 |
| MS.gene32287.t1 | MTR_2g045980 | 58.163 | 392 | 152 | 5 | 6 | 393 | 5 | 388 | 4.22e-151 | 432 |
| MS.gene32287.t1 | MTR_4g088535 | 57.662 | 385 | 140 | 4 | 4 | 388 | 5 | 366 | 2.92e-148 | 425 |
| MS.gene32287.t1 | MTR_3g101200 | 54.822 | 394 | 150 | 4 | 1 | 393 | 26 | 392 | 1.83e-137 | 398 |
| MS.gene32287.t1 | MTR_3g102920 | 53.616 | 401 | 132 | 7 | 4 | 391 | 49 | 408 | 3.90e-131 | 382 |
| MS.gene32287.t1 | MTR_3g101190 | 55.769 | 364 | 93 | 3 | 30 | 391 | 13 | 310 | 1.12e-129 | 375 |
| MS.gene32287.t1 | MTR_7g050830 | 56.918 | 318 | 106 | 2 | 2 | 299 | 12 | 318 | 1.02e-121 | 355 |
| MS.gene32287.t1 | MTR_3g100995 | 64.591 | 257 | 87 | 2 | 136 | 392 | 11 | 263 | 3.13e-116 | 339 |
| MS.gene32287.t1 | MTR_3g015760 | 67.939 | 262 | 73 | 5 | 135 | 392 | 26 | 280 | 5.71e-111 | 326 |
| MS.gene32287.t1 | MTR_3g018747 | 63.019 | 265 | 77 | 5 | 132 | 393 | 9 | 255 | 1.24e-108 | 319 |
| MS.gene32287.t1 | MTR_3g100010 | 52.903 | 310 | 98 | 3 | 33 | 309 | 42 | 336 | 4.28e-104 | 311 |
| MS.gene32287.t1 | MTR_3g100520 | 60.181 | 221 | 72 | 4 | 173 | 391 | 1 | 207 | 3.92e-85 | 258 |
| MS.gene32287.t1 | MTR_3g111160 | 59.729 | 221 | 84 | 3 | 173 | 391 | 1 | 218 | 1.17e-82 | 252 |
| MS.gene32287.t1 | MTR_3g114310 | 41.117 | 394 | 206 | 11 | 12 | 390 | 25 | 407 | 1.74e-82 | 258 |
| MS.gene32287.t1 | MTR_3g101110 | 57.676 | 241 | 69 | 5 | 132 | 367 | 68 | 280 | 2.82e-80 | 248 |
| MS.gene32287.t1 | MTR_3g099970 | 62.755 | 196 | 56 | 2 | 132 | 327 | 20 | 198 | 3.33e-80 | 245 |
| MS.gene32287.t1 | MTR_2g046410 | 58.373 | 209 | 80 | 3 | 189 | 393 | 144 | 349 | 1.43e-75 | 238 |
| MS.gene32287.t1 | MTR_3g101150 | 68.790 | 157 | 46 | 2 | 238 | 391 | 1 | 157 | 1.04e-67 | 211 |
| MS.gene32287.t1 | MTR_3g101020 | 56.150 | 187 | 54 | 2 | 206 | 392 | 1 | 159 | 4.12e-61 | 194 |
| MS.gene32287.t1 | MTR_3g102870 | 59.355 | 155 | 63 | 0 | 197 | 351 | 3 | 157 | 3.71e-56 | 182 |
| MS.gene32287.t1 | MTR_3g111150 | 53.631 | 179 | 57 | 2 | 8 | 186 | 1 | 153 | 6.58e-56 | 181 |
| MS.gene32287.t1 | MTR_3g100990 | 52.000 | 175 | 65 | 3 | 6 | 180 | 5 | 160 | 2.26e-44 | 160 |
| MS.gene32287.t1 | MTR_4g093550 | 64.130 | 92 | 29 | 2 | 6 | 97 | 6 | 93 | 4.62e-26 | 100 |
| MS.gene32287.t1 | MTR_6g046890 | 61.972 | 71 | 24 | 1 | 29 | 99 | 20 | 87 | 4.29e-19 | 83.2 |
| MS.gene32287.t1 | MTR_3g101140 | 59.701 | 67 | 27 | 0 | 325 | 391 | 48 | 114 | 2.02e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32287.t1 | AT1G47710 | 50.891 | 393 | 179 | 5 | 6 | 391 | 5 | 390 | 5.75e-136 | 394 |
| MS.gene32287.t1 | AT1G47710 | 50.891 | 393 | 179 | 5 | 6 | 391 | 32 | 417 | 2.27e-135 | 394 |
| MS.gene32287.t1 | AT3G45220 | 44.162 | 394 | 203 | 5 | 6 | 390 | 5 | 390 | 3.82e-117 | 346 |
| MS.gene32287.t1 | AT2G25240 | 46.015 | 389 | 195 | 8 | 6 | 390 | 5 | 382 | 4.78e-114 | 338 |
| MS.gene32287.t1 | AT2G26390 | 45.455 | 396 | 191 | 8 | 6 | 390 | 5 | 386 | 5.76e-110 | 328 |
| MS.gene32287.t1 | AT1G64030 | 43.959 | 389 | 192 | 5 | 6 | 390 | 5 | 371 | 3.82e-101 | 305 |
| MS.gene32287.t1 | AT1G62170 | 42.359 | 373 | 175 | 5 | 29 | 390 | 88 | 431 | 1.02e-98 | 300 |
| MS.gene32287.t1 | AT2G14540 | 42.526 | 388 | 197 | 5 | 6 | 390 | 33 | 397 | 8.29e-97 | 295 |
| MS.gene32287.t1 | AT1G62170 | 38.916 | 406 | 175 | 6 | 29 | 390 | 88 | 464 | 4.99e-92 | 285 |
| MS.gene32287.t1 | AT2G35580 | 41.989 | 362 | 180 | 8 | 36 | 390 | 33 | 371 | 1.23e-91 | 280 |
| MS.gene32287.t1 | AT1G64010 | 44.545 | 220 | 95 | 5 | 173 | 390 | 1 | 195 | 3.63e-58 | 188 |
| MS.gene32287.t1 | AT1G64010 | 43.902 | 205 | 88 | 5 | 188 | 390 | 2 | 181 | 3.27e-51 | 170 |
| MS.gene32287.t1 | AT1G62160 | 40.000 | 200 | 91 | 6 | 196 | 390 | 43 | 218 | 7.72e-37 | 134 |
| MS.gene32287.t1 | AT1G63280 | 55.932 | 118 | 48 | 2 | 129 | 244 | 5 | 120 | 1.48e-36 | 129 |
| MS.gene32287.t1 | AT1G51330 | 50.000 | 112 | 53 | 1 | 130 | 238 | 29 | 140 | 1.32e-26 | 105 |
| MS.gene32287.t1 | AT1G64020 | 33.036 | 112 | 72 | 3 | 13 | 123 | 12 | 121 | 6.64e-13 | 65.5 |
Find 84 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGCACTATACTTTAA+AGG | 0.146562 | 8.3:+49018243 | MS.gene32287:CDS |
| CCGAAATTCAAGATTTCTTT+TGG | 0.171353 | 8.3:+49018573 | MS.gene32287:CDS |
| TCTGGAACCATACTCTTTAT+TGG | 0.177113 | 8.3:+49018867 | MS.gene32287:CDS |
| CCTTCGTTGGCTTTCCTTAA+TGG | 0.196609 | 8.3:+49017772 | MS.gene32287:CDS |
| TGACAAAAGAAGCAAATTTA+TGG | 0.225380 | 8.3:+49018142 | MS.gene32287:CDS |
| AGCTTCCGAATCTAAGTTCT+TGG | 0.253184 | 8.3:+49018503 | MS.gene32287:CDS |
| TTGTCTTCACCTTGCGTATA+AGG | 0.282322 | 8.3:-49018411 | None:intergenic |
| AGCCTATGGGGATAGCTATA+TGG | 0.293869 | 8.3:+49018752 | MS.gene32287:CDS |
| CTGGAACCATACTCTTTATT+GGG | 0.301041 | 8.3:+49018868 | MS.gene32287:CDS |
| GAAATCAACTGAAGCAATAT+TGG | 0.319245 | 8.3:-49017863 | None:intergenic |
| GTTCAACCCACATACCATTA+AGG | 0.320214 | 8.3:-49017786 | None:intergenic |
| GGTTTCTTTGTATTCTTGTT+TGG | 0.323549 | 8.3:-49017569 | None:intergenic |
| TAGTGGAAGTTGGTGCCTTC+AGG | 0.326051 | 8.3:+49018547 | MS.gene32287:CDS |
| GAAATATGTCGGACACATAA+AGG | 0.333781 | 8.3:-49018692 | None:intergenic |
| CCAAAAGAAATCTTGAATTT+CGG | 0.337465 | 8.3:-49018573 | None:intergenic |
| AACACGACATGGAGCGATAA+TGG | 0.341348 | 8.3:-49017607 | None:intergenic |
| CAGTATATCAGTGTTCTTGA+TGG | 0.364509 | 8.3:+49018369 | MS.gene32287:CDS |
| CACTTGCCCAATAAAGAGTA+TGG | 0.383332 | 8.3:-49018874 | None:intergenic |
| GCCTATGGGGATAGCTATAT+GGG | 0.397587 | 8.3:+49018753 | MS.gene32287:CDS |
| TGGCTTTCCTTAATGGTATG+TGG | 0.399840 | 8.3:+49017779 | MS.gene32287:CDS |
| CTCTCCAATGCTGCTCCTGC+CGG | 0.400280 | 8.3:+49017745 | MS.gene32287:CDS |
| GTCAAAGCTCCTTCGGAGAA+AGG | 0.403461 | 8.3:-49018639 | None:intergenic |
| AATCAGTAGCCACAATTTCT+CGG | 0.405064 | 8.3:-49017834 | None:intergenic |
| TTTCTTCCTGATGCAAAAGA+TGG | 0.410392 | 8.3:+49018456 | MS.gene32287:CDS |
| TTGTTTGGAGAACAAATGTT+TGG | 0.415802 | 8.3:-49017554 | None:intergenic |
| CAAGCTTCCTCACGAATTAG+TGG | 0.418068 | 8.3:+49018530 | MS.gene32287:CDS |
| GACAAAAGAAGCAAATTTAT+GGG | 0.422156 | 8.3:+49018143 | MS.gene32287:CDS |
| TTGATCAGAGAAGATTTGTC+TGG | 0.431879 | 8.3:+49018849 | MS.gene32287:CDS |
| TCCTCCGGCAGGAGCAGCAT+TGG | 0.439334 | 8.3:-49017749 | None:intergenic |
| TTTATTGAAGTAAATGAAGA+AGG | 0.453378 | 8.3:+49018723 | MS.gene32287:CDS |
| GAAGAAGGTACCGAAGCCTA+TGG | 0.478272 | 8.3:+49018738 | MS.gene32287:CDS |
| GTCATGAAGGGAACCTTGAT+CGG | 0.480422 | 8.3:-49018333 | None:intergenic |
| GTGTTCCAAGAACTTAGATT+CGG | 0.487041 | 8.3:-49018508 | None:intergenic |
| ATAGCTATCCCCATAGGCTT+CGG | 0.489239 | 8.3:-49018748 | None:intergenic |
| CAAAGAAACCTTGGTTAGGT+TGG | 0.494142 | 8.3:-49017524 | None:intergenic |
| GTGTTAAGCATCATCGCTGC+TGG | 0.498106 | 8.3:+49017625 | MS.gene32287:CDS |
| TTTCCGTGGATTTGGATTGA+AGG | 0.501160 | 8.3:-49017684 | None:intergenic |
| TGCATTTGCAAAGATGAGCT+TGG | 0.502146 | 8.3:-49018229 | None:intergenic |
| TGGTCAAAGAAACCTTGGTT+AGG | 0.502434 | 8.3:-49017528 | None:intergenic |
| AGGAGCAGCATTGGAGAGCA+CGG | 0.507039 | 8.3:-49017740 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+AGG | 0.507136 | 8.3:+49017634 | MS.gene32287:CDS |
| GGCTTTCCTTAATGGTATGT+GGG | 0.508630 | 8.3:+49017780 | MS.gene32287:CDS |
| TCCTGCCGGAGGACCTTCGT+TGG | 0.508638 | 8.3:+49017759 | MS.gene32287:CDS |
| GATATACTGCATCTCATAGC+TGG | 0.512249 | 8.3:-49018355 | None:intergenic |
| TCTCAATGGTAGCCCGATCA+AGG | 0.512612 | 8.3:+49018320 | MS.gene32287:CDS |
| GAAAGCCAACGAAGGTCCTC+CGG | 0.516566 | 8.3:-49017764 | None:intergenic |
| AAGAAGGTACCGAAGCCTAT+GGG | 0.518386 | 8.3:+49018739 | MS.gene32287:CDS |
| GCCAACGAAGGTCCTCCGGC+AGG | 0.525135 | 8.3:-49017760 | None:intergenic |
| GTTAAACTATTAAATGACTC+AGG | 0.526215 | 8.3:-49018207 | None:intergenic |
| CGATGATGCTTAACACGACA+TGG | 0.527522 | 8.3:-49017618 | None:intergenic |
| CATCTCATAGCTGGTCATGA+AGG | 0.531770 | 8.3:-49018346 | None:intergenic |
| GGCGATGGTCAAAGAAACCT+TGG | 0.531986 | 8.3:-49017533 | None:intergenic |
| ACCTTGCTTCCGAGAAATTG+TGG | 0.534223 | 8.3:+49017825 | MS.gene32287:CDS |
| AAAAGACTTGTGAAATATGT+CGG | 0.536698 | 8.3:-49018703 | None:intergenic |
| CTTGAATTTCGGAATCCTGA+AGG | 0.538497 | 8.3:-49018562 | None:intergenic |
| CTTTAAAGGAGTGTGGAAAG+AGG | 0.539924 | 8.3:+49018257 | MS.gene32287:CDS |
| TCCAATGCTGCTCCTGCCGG+AGG | 0.541408 | 8.3:+49017748 | MS.gene32287:CDS |
| TCATGAAGGGAACCTTGATC+GGG | 0.545518 | 8.3:-49018332 | None:intergenic |
| ATTCCTTCAATCCAAATCCA+CGG | 0.547231 | 8.3:+49017681 | MS.gene32287:CDS |
| CTACAAGATCATTTGTCAAG+AGG | 0.553832 | 8.3:-49018903 | None:intergenic |
| GCCACAATTTCTCGGAAGCA+AGG | 0.555079 | 8.3:-49017826 | None:intergenic |
| CTTCGTCTTCCTTATACGCA+AGG | 0.561814 | 8.3:+49018402 | MS.gene32287:CDS |
| CCTCACGAATTAGTGGAAGT+TGG | 0.563985 | 8.3:+49018537 | MS.gene32287:CDS |
| TAATGGCGAAAATACAACAT+TGG | 0.566785 | 8.3:-49017590 | None:intergenic |
| CACTATACTTTAAAGGAGTG+TGG | 0.566946 | 8.3:+49018250 | MS.gene32287:CDS |
| ACTGATATGCTAAAAGAGCT+AGG | 0.568471 | 8.3:+49018606 | MS.gene32287:CDS |
| GGAGAACAAATGTTTGGCGA+TGG | 0.575181 | 8.3:-49017548 | None:intergenic |
| ATCTCATAGCTGGTCATGAA+GGG | 0.593119 | 8.3:-49018345 | None:intergenic |
| TTTATCAGTGGCGGAGTACG+AGG | 0.593449 | 8.3:-49018798 | None:intergenic |
| TGAAAGAACTTGTTGTTGTG+TGG | 0.600880 | 8.3:-49017659 | None:intergenic |
| TTCAGTTGATTTCGTTAACG+AGG | 0.607634 | 8.3:+49017873 | MS.gene32287:CDS |
| GAAAGAACTTGTTGTTGTGT+GGG | 0.609834 | 8.3:-49017658 | None:intergenic |
| CCCCATATAGCTATCCCCAT+AGG | 0.626236 | 8.3:-49018754 | None:intergenic |
| GCTACGAAGTTTATCAGTGG+CGG | 0.644094 | 8.3:-49018807 | None:intergenic |
| CACGGAGGAAACAAGCTGAG+AGG | 0.674325 | 8.3:-49017722 | None:intergenic |
| AGAAGGTACCGAAGCCTATG+GGG | 0.675963 | 8.3:+49018740 | MS.gene32287:CDS |
| ATCAATCACCAACCTAACCA+AGG | 0.679210 | 8.3:+49017516 | MS.gene32287:CDS |
| CCATTAAGGAAAGCCAACGA+AGG | 0.699382 | 8.3:-49017772 | None:intergenic |
| CCAACTTCCACTAATTCGTG+AGG | 0.701450 | 8.3:-49018537 | None:intergenic |
| TCAGCTACGAAGTTTATCAG+TGG | 0.706881 | 8.3:-49018810 | None:intergenic |
| CCTATGGGGATAGCTATATG+GGG | 0.715773 | 8.3:+49018754 | MS.gene32287:CDS |
| AGCAGCATTGGAGAGCACGG+AGG | 0.716416 | 8.3:-49017737 | None:intergenic |
| CTTGCGTATAAGGAAGACGA+AGG | 0.726910 | 8.3:-49018401 | None:intergenic |
| TATGCTAAAAGAGCTAGGCG+TGG | 0.728186 | 8.3:+49018611 | MS.gene32287:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCAAACATAAAATTAA+CGG | - | chr8.3:49018103-49018122 | None:intergenic | 10.0% |
| !! | ATTATTTGATAAAAGACTTA+GGG | + | chr8.3:49017993-49018012 | MS.gene32287:intron | 15.0% |
| !! | ATTCAAGATAAATAAAAAGA+TGG | - | chr8.3:49017915-49017934 | None:intergenic | 15.0% |
| !! | TATTATTTGATAAAAGACTT+AGG | + | chr8.3:49017992-49018011 | MS.gene32287:intron | 15.0% |
| !!! | TATGTTTGATATTGTTTTAA+AGG | + | chr8.3:49018110-49018129 | MS.gene32287:intron | 15.0% |
| !!! | TTGTATTTGGTATTTTATTT+TGG | + | chr8.3:49017954-49017973 | MS.gene32287:intron | 15.0% |
| !! | TTTATTGAAGTAAATGAAGA+AGG | + | chr8.3:49018723-49018742 | MS.gene32287:CDS | 20.0% |
| !!! | ACAATAATAAAAGCATGATA+TGG | - | chr8.3:49017938-49017957 | None:intergenic | 20.0% |
| !!! | CATGCTTTTATTATTGTATT+TGG | + | chr8.3:49017941-49017960 | MS.gene32287:intron | 20.0% |
| ! | AAAAGACTTGTGAAATATGT+CGG | - | chr8.3:49018706-49018725 | None:intergenic | 25.0% |
| ! | AAGAACAAAGATCGATATTT+AGG | - | chr8.3:49018029-49018048 | None:intergenic | 25.0% |
| ! | CCAAAAGAAATCTTGAATTT+CGG | - | chr8.3:49018576-49018595 | None:intergenic | 25.0% |
| ! | GACAAAAGAAGCAAATTTAT+GGG | + | chr8.3:49018143-49018162 | MS.gene32287:CDS | 25.0% |
| ! | GTTAAACTATTAAATGACTC+AGG | - | chr8.3:49018210-49018229 | None:intergenic | 25.0% |
| ! | TGACAAAAGAAGCAAATTTA+TGG | + | chr8.3:49018142-49018161 | MS.gene32287:CDS | 25.0% |
| !! | CGAAATTCAAGATTTCTTTT+GGG | + | chr8.3:49018574-49018593 | MS.gene32287:CDS | 25.0% |
| !! | TATGATTTTCACATTCTCAA+TGG | + | chr8.3:49018306-49018325 | MS.gene32287:CDS | 25.0% |
| CTCTGATCAAAAACAAGAAA+GGG | - | chr8.3:49018839-49018858 | None:intergenic | 30.0% | |
| GAAATCAACTGAAGCAATAT+TGG | - | chr8.3:49017866-49017885 | None:intergenic | 30.0% | |
| GCAAATGCACTATACTTTAA+AGG | + | chr8.3:49018243-49018262 | MS.gene32287:CDS | 30.0% | |
| GGTTTCTTTGTATTCTTGTT+TGG | - | chr8.3:49017572-49017591 | None:intergenic | 30.0% | |
| TAATGGCGAAAATACAACAT+TGG | - | chr8.3:49017593-49017612 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | - | chr8.3:49018840-49018859 | None:intergenic | 30.0% | |
| TTGTTTGGAGAACAAATGTT+TGG | - | chr8.3:49017557-49017576 | None:intergenic | 30.0% | |
| ! | CCGAAATTCAAGATTTCTTT+TGG | + | chr8.3:49018573-49018592 | MS.gene32287:CDS | 30.0% |
| AATCAGTAGCCACAATTTCT+CGG | - | chr8.3:49017837-49017856 | None:intergenic | 35.0% | |
| ACTGATATGCTAAAAGAGCT+AGG | + | chr8.3:49018606-49018625 | MS.gene32287:CDS | 35.0% | |
| ATTCCTTCAATCCAAATCCA+CGG | + | chr8.3:49017681-49017700 | MS.gene32287:CDS | 35.0% | |
| CAGTATATCAGTGTTCTTGA+TGG | + | chr8.3:49018369-49018388 | MS.gene32287:CDS | 35.0% | |
| CTGGAACCATACTCTTTATT+GGG | + | chr8.3:49018868-49018887 | MS.gene32287:CDS | 35.0% | |
| GAAATATGTCGGACACATAA+AGG | - | chr8.3:49018695-49018714 | None:intergenic | 35.0% | |
| GTGTTCCAAGAACTTAGATT+CGG | - | chr8.3:49018511-49018530 | None:intergenic | 35.0% | |
| TTGATCAGAGAAGATTTGTC+TGG | + | chr8.3:49018849-49018868 | MS.gene32287:CDS | 35.0% | |
| TTTCTTCCTGATGCAAAAGA+TGG | + | chr8.3:49018456-49018475 | MS.gene32287:CDS | 35.0% | |
| ! | AAAGTCGTTTAGATTTTCCG+TGG | - | chr8.3:49017701-49017720 | None:intergenic | 35.0% |
| ! | AACAATCCATCTTTTGCATC+AGG | - | chr8.3:49018465-49018484 | None:intergenic | 35.0% |
| ! | CACTATACTTTAAAGGAGTG+TGG | + | chr8.3:49018250-49018269 | MS.gene32287:CDS | 35.0% |
| ! | CATTTTTGTCAAAGCTCCTT+CGG | - | chr8.3:49018649-49018668 | None:intergenic | 35.0% |
| ! | GTTTAGATTTTCCGTGGATT+TGG | - | chr8.3:49017695-49017714 | None:intergenic | 35.0% |
| ! | TCTGGAACCATACTCTTTAT+TGG | + | chr8.3:49018867-49018886 | MS.gene32287:CDS | 35.0% |
| ! | TTCAGTTGATTTCGTTAACG+AGG | + | chr8.3:49017873-49017892 | MS.gene32287:CDS | 35.0% |
| !! | GAAAGAACTTGTTGTTGTGT+GGG | - | chr8.3:49017661-49017680 | None:intergenic | 35.0% |
| !! | TGAAAGAACTTGTTGTTGTG+TGG | - | chr8.3:49017662-49017681 | None:intergenic | 35.0% |
| AGATCGATATTTAGGCCACT+TGG | - | chr8.3:49018021-49018040 | None:intergenic | 40.0% | |
| AGCTTCCGAATCTAAGTTCT+TGG | + | chr8.3:49018503-49018522 | MS.gene32287:CDS | 40.0% | |
| ATCAATCACCAACCTAACCA+AGG | + | chr8.3:49017516-49017535 | MS.gene32287:CDS | 40.0% | |
| ATCTCATAGCTGGTCATGAA+GGG | - | chr8.3:49018348-49018367 | None:intergenic | 40.0% | |
| CAAAGAAACCTTGGTTAGGT+TGG | - | chr8.3:49017527-49017546 | None:intergenic | 40.0% | |
| CACTTGCCCAATAAAGAGTA+TGG | - | chr8.3:49018877-49018896 | None:intergenic | 40.0% | |
| CTTGAATTTCGGAATCCTGA+AGG | - | chr8.3:49018565-49018584 | None:intergenic | 40.0% | |
| GATATACTGCATCTCATAGC+TGG | - | chr8.3:49018358-49018377 | None:intergenic | 40.0% | |
| GGCTTTCCTTAATGGTATGT+GGG | + | chr8.3:49017780-49017799 | MS.gene32287:CDS | 40.0% | |
| GTTCAACCCACATACCATTA+AGG | - | chr8.3:49017789-49017808 | None:intergenic | 40.0% | |
| TCAGCTACGAAGTTTATCAG+TGG | - | chr8.3:49018813-49018832 | None:intergenic | 40.0% | |
| TGCATTTGCAAAGATGAGCT+TGG | - | chr8.3:49018232-49018251 | None:intergenic | 40.0% | |
| TGGCTTTCCTTAATGGTATG+TGG | + | chr8.3:49017779-49017798 | MS.gene32287:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.3:49018162-49018181 | MS.gene32287:CDS | 40.0% | |
| TGGTCAAAGAAACCTTGGTT+AGG | - | chr8.3:49017531-49017550 | None:intergenic | 40.0% | |
| TTGTCTTCACCTTGCGTATA+AGG | - | chr8.3:49018414-49018433 | None:intergenic | 40.0% | |
| TTTCCGTGGATTTGGATTGA+AGG | - | chr8.3:49017687-49017706 | None:intergenic | 40.0% | |
| ! | AAAAGACTTAGGGTACCAAG+TGG | + | chr8.3:49018003-49018022 | MS.gene32287:intron | 40.0% |
| ! | AGGAGCTTTGACAAAAATGG+TGG | + | chr8.3:49018650-49018669 | MS.gene32287:CDS | 40.0% |
| ! | CGAAGGAGCTTTGACAAAAA+TGG | + | chr8.3:49018647-49018666 | MS.gene32287:CDS | 40.0% |
| ! | CTTTAAAGGAGTGTGGAAAG+AGG | + | chr8.3:49018257-49018276 | MS.gene32287:CDS | 40.0% |
| AACACGACATGGAGCGATAA+TGG | - | chr8.3:49017610-49017629 | None:intergenic | 45.0% | |
| ACCTTGCTTCCGAGAAATTG+TGG | + | chr8.3:49017825-49017844 | MS.gene32287:CDS | 45.0% | |
| AGCCTATGGGGATAGCTATA+TGG | + | chr8.3:49018752-49018771 | MS.gene32287:CDS | 45.0% | |
| ATAGCTATCCCCATAGGCTT+CGG | - | chr8.3:49018751-49018770 | None:intergenic | 45.0% | |
| CAAGCTTCCTCACGAATTAG+TGG | + | chr8.3:49018530-49018549 | MS.gene32287:CDS | 45.0% | |
| CATCTCATAGCTGGTCATGA+AGG | - | chr8.3:49018349-49018368 | None:intergenic | 45.0% | |
| CCAACTTCCACTAATTCGTG+AGG | - | chr8.3:49018540-49018559 | None:intergenic | 45.0% | |
| CCATTAAGGAAAGCCAACGA+AGG | - | chr8.3:49017775-49017794 | None:intergenic | 45.0% | |
| CCTATGGGGATAGCTATATG+GGG | + | chr8.3:49018754-49018773 | MS.gene32287:CDS | 45.0% | |
| CCTCACGAATTAGTGGAAGT+TGG | + | chr8.3:49018537-49018556 | MS.gene32287:CDS | 45.0% | |
| CGATGATGCTTAACACGACA+TGG | - | chr8.3:49017621-49017640 | None:intergenic | 45.0% | |
| CTTCGTCTTCCTTATACGCA+AGG | + | chr8.3:49018402-49018421 | MS.gene32287:CDS | 45.0% | |
| CTTGCGTATAAGGAAGACGA+AGG | - | chr8.3:49018404-49018423 | None:intergenic | 45.0% | |
| GCCTATGGGGATAGCTATAT+GGG | + | chr8.3:49018753-49018772 | MS.gene32287:CDS | 45.0% | |
| GCTACGAAGTTTATCAGTGG+CGG | - | chr8.3:49018810-49018829 | None:intergenic | 45.0% | |
| GGAGAACAAATGTTTGGCGA+TGG | - | chr8.3:49017551-49017570 | None:intergenic | 45.0% | |
| GTCATGAAGGGAACCTTGAT+CGG | - | chr8.3:49018336-49018355 | None:intergenic | 45.0% | |
| TATGCTAAAAGAGCTAGGCG+TGG | + | chr8.3:49018611-49018630 | MS.gene32287:CDS | 45.0% | |
| TCATGAAGGGAACCTTGATC+GGG | - | chr8.3:49018335-49018354 | None:intergenic | 45.0% | |
| !! | AAGAAGGTACCGAAGCCTAT+GGG | + | chr8.3:49018739-49018758 | MS.gene32287:CDS | 45.0% |
| !! | CCTTCGTTGGCTTTCCTTAA+TGG | + | chr8.3:49017772-49017791 | MS.gene32287:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCCGA+AGG | + | chr8.3:49018630-49018649 | MS.gene32287:CDS | 45.0% |
| CCCCATATAGCTATCCCCAT+AGG | - | chr8.3:49018757-49018776 | None:intergenic | 50.0% | |
| GCCACAATTTCTCGGAAGCA+AGG | - | chr8.3:49017829-49017848 | None:intergenic | 50.0% | |
| GGCGATGGTCAAAGAAACCT+TGG | - | chr8.3:49017536-49017555 | None:intergenic | 50.0% | |
| GTCAAAGCTCCTTCGGAGAA+AGG | - | chr8.3:49018642-49018661 | None:intergenic | 50.0% | |
| GTGTTAAGCATCATCGCTGC+TGG | + | chr8.3:49017625-49017644 | MS.gene32287:CDS | 50.0% | |
| TCTCAATGGTAGCCCGATCA+AGG | + | chr8.3:49018320-49018339 | MS.gene32287:CDS | 50.0% | |
| ! | TTTATCAGTGGCGGAGTACG+AGG | - | chr8.3:49018801-49018820 | None:intergenic | 50.0% |
| !! | AGAAGGTACCGAAGCCTATG+GGG | + | chr8.3:49018740-49018759 | MS.gene32287:CDS | 50.0% |
| !! | GAAGAAGGTACCGAAGCCTA+TGG | + | chr8.3:49018738-49018757 | MS.gene32287:CDS | 50.0% |
| !! | TAGTGGAAGTTGGTGCCTTC+AGG | + | chr8.3:49018547-49018566 | MS.gene32287:CDS | 50.0% |
| CACGGAGGAAACAAGCTGAG+AGG | - | chr8.3:49017725-49017744 | None:intergenic | 55.0% | |
| GAAAGCCAACGAAGGTCCTC+CGG | - | chr8.3:49017767-49017786 | None:intergenic | 55.0% | |
| ! | AGGAGCAGCATTGGAGAGCA+CGG | - | chr8.3:49017743-49017762 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+AGG | + | chr8.3:49017634-49017653 | MS.gene32287:CDS | 55.0% |
| CTCTCCAATGCTGCTCCTGC+CGG | + | chr8.3:49017745-49017764 | MS.gene32287:CDS | 60.0% | |
| ! | AGCAGCATTGGAGAGCACGG+AGG | - | chr8.3:49017740-49017759 | None:intergenic | 60.0% |
| TCCAATGCTGCTCCTGCCGG+AGG | + | chr8.3:49017748-49017767 | MS.gene32287:CDS | 65.0% | |
| TCCTCCGGCAGGAGCAGCAT+TGG | - | chr8.3:49017752-49017771 | None:intergenic | 65.0% | |
| TCCTGCCGGAGGACCTTCGT+TGG | + | chr8.3:49017759-49017778 | MS.gene32287:CDS | 65.0% | |
| GCCAACGAAGGTCCTCCGGC+AGG | - | chr8.3:49017763-49017782 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 49017499 | 49018917 | 49017499 | ID=MS.gene32287 |
| chr8.3 | mRNA | 49017499 | 49018917 | 49017499 | ID=MS.gene32287.t1;Parent=MS.gene32287 |
| chr8.3 | exon | 49017499 | 49017894 | 49017499 | ID=MS.gene32287.t1.exon1;Parent=MS.gene32287.t1 |
| chr8.3 | CDS | 49017499 | 49017894 | 49017499 | ID=cds.MS.gene32287.t1;Parent=MS.gene32287.t1 |
| chr8.3 | exon | 49018132 | 49018917 | 49018132 | ID=MS.gene32287.t1.exon2;Parent=MS.gene32287.t1 |
| chr8.3 | CDS | 49018132 | 49018917 | 49018132 | ID=cds.MS.gene32287.t1;Parent=MS.gene32287.t1 |
| Gene Sequence |
| Protein sequence |
