AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32288.t1 MTR_8g461160 92.152 395 28 2 1 393 1 394 0.0 712
MS.gene32288.t1 MTR_3g101180 70.500 400 111 3 1 393 1 400 0.0 558
MS.gene32288.t1 MTR_3g101010 68.653 386 118 2 6 391 5 387 0.0 526
MS.gene32288.t1 MTR_7g451890 66.071 392 132 1 2 392 10 401 0.0 512
MS.gene32288.t1 MTR_7g047780 65.306 392 135 1 2 392 10 401 0.0 511
MS.gene32288.t1 MTR_3g018740 67.095 389 122 3 6 393 5 388 0.0 510
MS.gene32288.t1 MTR_7g050750 65.816 392 133 1 2 392 4 395 1.38e-180 508
MS.gene32288.t1 MTR_4g045707 64.394 396 126 3 1 391 1 386 7.60e-180 505
MS.gene32288.t1 MTR_7g050810 64.213 394 136 2 2 392 12 403 1.36e-175 495
MS.gene32288.t1 MTR_8g027395 63.472 386 134 2 6 391 17 395 2.70e-172 486
MS.gene32288.t1 MTR_3g101130 61.637 391 146 1 1 391 1 387 4.96e-172 486
MS.gene32288.t1 MTR_3g101030 62.217 397 129 5 12 391 35 427 2.03e-171 486
MS.gene32288.t1 MTR_3g048000 61.697 389 125 4 4 391 25 390 1.27e-163 464
MS.gene32288.t1 MTR_8g027420 60.881 386 133 3 6 391 6 373 4.21e-161 457
MS.gene32288.t1 MTR_4g088525 59.892 369 143 1 23 391 4 367 2.78e-159 452
MS.gene32288.t1 MTR_3g015620 60.406 394 119 6 6 392 16 379 4.71e-155 442
MS.gene32288.t1 MTR_3g101050 60.102 391 136 5 4 393 27 398 2.43e-153 439
MS.gene32288.t1 MTR_2g046030 58.163 392 152 5 6 393 5 388 2.39e-152 436
MS.gene32288.t1 MTR_2g045980 58.163 392 152 5 6 393 5 388 4.22e-151 432
MS.gene32288.t1 MTR_4g088535 57.662 385 140 4 4 388 5 366 2.92e-148 425
MS.gene32288.t1 MTR_3g101200 54.822 394 150 4 1 393 26 392 1.83e-137 398
MS.gene32288.t1 MTR_3g102920 53.616 401 132 7 4 391 49 408 3.90e-131 382
MS.gene32288.t1 MTR_3g101190 55.769 364 93 3 30 391 13 310 1.12e-129 375
MS.gene32288.t1 MTR_7g050830 56.918 318 106 2 2 299 12 318 1.02e-121 355
MS.gene32288.t1 MTR_3g100995 64.591 257 87 2 136 392 11 263 3.13e-116 339
MS.gene32288.t1 MTR_3g015760 67.939 262 73 5 135 392 26 280 5.71e-111 326
MS.gene32288.t1 MTR_3g018747 63.019 265 77 5 132 393 9 255 1.24e-108 319
MS.gene32288.t1 MTR_3g100010 52.903 310 98 3 33 309 42 336 4.28e-104 311
MS.gene32288.t1 MTR_3g100520 60.181 221 72 4 173 391 1 207 3.92e-85 258
MS.gene32288.t1 MTR_3g111160 59.729 221 84 3 173 391 1 218 1.17e-82 252
MS.gene32288.t1 MTR_3g114310 41.117 394 206 11 12 390 25 407 1.74e-82 258
MS.gene32288.t1 MTR_3g101110 57.676 241 69 5 132 367 68 280 2.82e-80 248
MS.gene32288.t1 MTR_3g099970 62.755 196 56 2 132 327 20 198 3.33e-80 245
MS.gene32288.t1 MTR_2g046410 58.373 209 80 3 189 393 144 349 1.43e-75 238
MS.gene32288.t1 MTR_3g101150 68.790 157 46 2 238 391 1 157 1.04e-67 211
MS.gene32288.t1 MTR_3g101020 56.150 187 54 2 206 392 1 159 4.12e-61 194
MS.gene32288.t1 MTR_3g102870 59.355 155 63 0 197 351 3 157 3.71e-56 182
MS.gene32288.t1 MTR_3g111150 53.631 179 57 2 8 186 1 153 6.58e-56 181
MS.gene32288.t1 MTR_3g100990 52.000 175 65 3 6 180 5 160 2.26e-44 160
MS.gene32288.t1 MTR_4g093550 64.130 92 29 2 6 97 6 93 4.62e-26 100
MS.gene32288.t1 MTR_6g046890 61.972 71 24 1 29 99 20 87 4.29e-19 83.2
MS.gene32288.t1 MTR_3g101140 59.701 67 27 0 325 391 48 114 2.02e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32288.t1 AT1G47710 50.891 393 179 5 6 391 5 390 5.75e-136 394
MS.gene32288.t1 AT1G47710 50.891 393 179 5 6 391 32 417 2.27e-135 394
MS.gene32288.t1 AT3G45220 44.162 394 203 5 6 390 5 390 3.82e-117 346
MS.gene32288.t1 AT2G25240 46.015 389 195 8 6 390 5 382 4.78e-114 338
MS.gene32288.t1 AT2G26390 45.455 396 191 8 6 390 5 386 5.76e-110 328
MS.gene32288.t1 AT1G64030 43.959 389 192 5 6 390 5 371 3.82e-101 305
MS.gene32288.t1 AT1G62170 42.359 373 175 5 29 390 88 431 1.02e-98 300
MS.gene32288.t1 AT2G14540 42.526 388 197 5 6 390 33 397 8.29e-97 295
MS.gene32288.t1 AT1G62170 38.916 406 175 6 29 390 88 464 4.99e-92 285
MS.gene32288.t1 AT2G35580 41.989 362 180 8 36 390 33 371 1.23e-91 280
MS.gene32288.t1 AT1G64010 44.545 220 95 5 173 390 1 195 3.63e-58 188
MS.gene32288.t1 AT1G64010 43.902 205 88 5 188 390 2 181 3.27e-51 170
MS.gene32288.t1 AT1G62160 40.000 200 91 6 196 390 43 218 7.72e-37 134
MS.gene32288.t1 AT1G63280 55.932 118 48 2 129 244 5 120 1.48e-36 129
MS.gene32288.t1 AT1G51330 50.000 112 53 1 130 238 29 140 1.32e-26 105
MS.gene32288.t1 AT1G64020 33.036 112 72 3 13 123 12 121 6.64e-13 65.5

Find 84 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTATACTTTAA+AGG 0.146562 8.3:+49029479 MS.gene32288:CDS
CCGAAATTCAAGATTTCTTT+TGG 0.171353 8.3:+49029809 MS.gene32288:CDS
TCTGGAACCATACTCTTTAT+TGG 0.177113 8.3:+49030103 MS.gene32288:CDS
CCTTCGTTGGCTTTCCTTAA+TGG 0.196609 8.3:+49029008 MS.gene32288:CDS
TGACAAAAGAAGCAAATTTA+TGG 0.225380 8.3:+49029378 MS.gene32288:CDS
AGCTTCCGAATCTAAGTTCT+TGG 0.253184 8.3:+49029739 MS.gene32288:CDS
TTGTCTTCACCTTGCGTATA+AGG 0.282322 8.3:-49029647 None:intergenic
AGCCTATGGGGATAGCTATA+TGG 0.293869 8.3:+49029988 MS.gene32288:CDS
CTGGAACCATACTCTTTATT+GGG 0.301041 8.3:+49030104 MS.gene32288:CDS
GAAATCAACTGAAGCAATAT+TGG 0.319245 8.3:-49029099 None:intergenic
GTTCAACCCACATACCATTA+AGG 0.320214 8.3:-49029022 None:intergenic
GGTTTCTTTGTATTCTTGTT+TGG 0.323549 8.3:-49028805 None:intergenic
TAGTGGAAGTTGGTGCCTTC+AGG 0.326051 8.3:+49029783 MS.gene32288:CDS
GAAATATGTCGGACACATAA+AGG 0.333781 8.3:-49029928 None:intergenic
CCAAAAGAAATCTTGAATTT+CGG 0.337465 8.3:-49029809 None:intergenic
AACACGACATGGAGCGATAA+TGG 0.341348 8.3:-49028843 None:intergenic
CAGTATATCAGTGTTCTTGA+TGG 0.364509 8.3:+49029605 MS.gene32288:CDS
CACTTGCCCAATAAAGAGTA+TGG 0.383332 8.3:-49030110 None:intergenic
GCCTATGGGGATAGCTATAT+GGG 0.397587 8.3:+49029989 MS.gene32288:CDS
TGGCTTTCCTTAATGGTATG+TGG 0.399840 8.3:+49029015 MS.gene32288:CDS
CTCTCCAATGCTGCTCCTGC+CGG 0.400280 8.3:+49028981 MS.gene32288:CDS
GTCAAAGCTCCTTCGGAGAA+AGG 0.403461 8.3:-49029875 None:intergenic
AATCAGTAGCCACAATTTCT+CGG 0.405064 8.3:-49029070 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.410392 8.3:+49029692 MS.gene32288:CDS
TTGTTTGGAGAACAAATGTT+TGG 0.415802 8.3:-49028790 None:intergenic
CAAGCTTCCTCACGAATTAG+TGG 0.418068 8.3:+49029766 MS.gene32288:CDS
GACAAAAGAAGCAAATTTAT+GGG 0.422156 8.3:+49029379 MS.gene32288:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 8.3:+49030085 MS.gene32288:CDS
TCCTCCGGCAGGAGCAGCAT+TGG 0.439334 8.3:-49028985 None:intergenic
TTTATTGAAGTAAATGAAGA+AGG 0.453378 8.3:+49029959 MS.gene32288:CDS
GAAGAAGGTACCGAAGCCTA+TGG 0.478272 8.3:+49029974 MS.gene32288:CDS
GTCATGAAGGGAACCTTGAT+CGG 0.480422 8.3:-49029569 None:intergenic
GTGTTCCAAGAACTTAGATT+CGG 0.487041 8.3:-49029744 None:intergenic
ATAGCTATCCCCATAGGCTT+CGG 0.489239 8.3:-49029984 None:intergenic
CAAAGAAACCTTGGTTAGGT+TGG 0.494142 8.3:-49028760 None:intergenic
GTGTTAAGCATCATCGCTGC+TGG 0.498106 8.3:+49028861 MS.gene32288:CDS
TTTCCGTGGATTTGGATTGA+AGG 0.501160 8.3:-49028920 None:intergenic
TGCATTTGCAAAGATGAGCT+TGG 0.502146 8.3:-49029465 None:intergenic
TGGTCAAAGAAACCTTGGTT+AGG 0.502434 8.3:-49028764 None:intergenic
AGGAGCAGCATTGGAGAGCA+CGG 0.507039 8.3:-49028976 None:intergenic
ATCATCGCTGCTGGCTCTGA+AGG 0.507136 8.3:+49028870 MS.gene32288:CDS
GGCTTTCCTTAATGGTATGT+GGG 0.508630 8.3:+49029016 MS.gene32288:CDS
TCCTGCCGGAGGACCTTCGT+TGG 0.508638 8.3:+49028995 MS.gene32288:CDS
GATATACTGCATCTCATAGC+TGG 0.512249 8.3:-49029591 None:intergenic
TCTCAATGGTAGCCCGATCA+AGG 0.512612 8.3:+49029556 MS.gene32288:CDS
GAAAGCCAACGAAGGTCCTC+CGG 0.516566 8.3:-49029000 None:intergenic
AAGAAGGTACCGAAGCCTAT+GGG 0.518386 8.3:+49029975 MS.gene32288:CDS
GCCAACGAAGGTCCTCCGGC+AGG 0.525135 8.3:-49028996 None:intergenic
GTTAAACTATTAAATGACTC+AGG 0.526215 8.3:-49029443 None:intergenic
CGATGATGCTTAACACGACA+TGG 0.527522 8.3:-49028854 None:intergenic
CATCTCATAGCTGGTCATGA+AGG 0.531770 8.3:-49029582 None:intergenic
GGCGATGGTCAAAGAAACCT+TGG 0.531986 8.3:-49028769 None:intergenic
ACCTTGCTTCCGAGAAATTG+TGG 0.534223 8.3:+49029061 MS.gene32288:CDS
AAAAGACTTGTGAAATATGT+CGG 0.536698 8.3:-49029939 None:intergenic
CTTGAATTTCGGAATCCTGA+AGG 0.538497 8.3:-49029798 None:intergenic
CTTTAAAGGAGTGTGGAAAG+AGG 0.539924 8.3:+49029493 MS.gene32288:CDS
TCCAATGCTGCTCCTGCCGG+AGG 0.541408 8.3:+49028984 MS.gene32288:CDS
TCATGAAGGGAACCTTGATC+GGG 0.545518 8.3:-49029568 None:intergenic
ATTCCTTCAATCCAAATCCA+CGG 0.547231 8.3:+49028917 MS.gene32288:CDS
CTACAAGATCATTTGTCAAG+AGG 0.553832 8.3:-49030139 None:intergenic
GCCACAATTTCTCGGAAGCA+AGG 0.555079 8.3:-49029062 None:intergenic
CTTCGTCTTCCTTATACGCA+AGG 0.561814 8.3:+49029638 MS.gene32288:CDS
CCTCACGAATTAGTGGAAGT+TGG 0.563985 8.3:+49029773 MS.gene32288:CDS
TAATGGCGAAAATACAACAT+TGG 0.566785 8.3:-49028826 None:intergenic
CACTATACTTTAAAGGAGTG+TGG 0.566946 8.3:+49029486 MS.gene32288:CDS
ACTGATATGCTAAAAGAGCT+AGG 0.568471 8.3:+49029842 MS.gene32288:CDS
GGAGAACAAATGTTTGGCGA+TGG 0.575181 8.3:-49028784 None:intergenic
ATCTCATAGCTGGTCATGAA+GGG 0.593119 8.3:-49029581 None:intergenic
TTTATCAGTGGCGGAGTACG+AGG 0.593449 8.3:-49030034 None:intergenic
TGAAAGAACTTGTTGTTGTG+TGG 0.600880 8.3:-49028895 None:intergenic
TTCAGTTGATTTCGTTAACG+AGG 0.607634 8.3:+49029109 MS.gene32288:CDS
GAAAGAACTTGTTGTTGTGT+GGG 0.609834 8.3:-49028894 None:intergenic
CCCCATATAGCTATCCCCAT+AGG 0.626236 8.3:-49029990 None:intergenic
GCTACGAAGTTTATCAGTGG+CGG 0.644094 8.3:-49030043 None:intergenic
CACGGAGGAAACAAGCTGAG+AGG 0.674325 8.3:-49028958 None:intergenic
AGAAGGTACCGAAGCCTATG+GGG 0.675963 8.3:+49029976 MS.gene32288:CDS
ATCAATCACCAACCTAACCA+AGG 0.679210 8.3:+49028752 MS.gene32288:CDS
CCATTAAGGAAAGCCAACGA+AGG 0.699382 8.3:-49029008 None:intergenic
CCAACTTCCACTAATTCGTG+AGG 0.701450 8.3:-49029773 None:intergenic
TCAGCTACGAAGTTTATCAG+TGG 0.706881 8.3:-49030046 None:intergenic
CCTATGGGGATAGCTATATG+GGG 0.715773 8.3:+49029990 MS.gene32288:CDS
AGCAGCATTGGAGAGCACGG+AGG 0.716416 8.3:-49028973 None:intergenic
CTTGCGTATAAGGAAGACGA+AGG 0.726910 8.3:-49029637 None:intergenic
TATGCTAAAAGAGCTAGGCG+TGG 0.728186 8.3:+49029847 MS.gene32288:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAACATAAAATTAA+CGG - chr8.3:49029339-49029358 None:intergenic 10.0%
!! ATTATTTGATAAAAGACTTA+GGG + chr8.3:49029229-49029248 MS.gene32288:intron 15.0%
!! ATTCAAGATAAATAAAAAGA+TGG - chr8.3:49029151-49029170 None:intergenic 15.0%
!! TATTATTTGATAAAAGACTT+AGG + chr8.3:49029228-49029247 MS.gene32288:intron 15.0%
!!! TATGTTTGATATTGTTTTAA+AGG + chr8.3:49029346-49029365 MS.gene32288:intron 15.0%
!!! TTGTATTTGGTATTTTATTT+TGG + chr8.3:49029190-49029209 MS.gene32288:intron 15.0%
!! TTTATTGAAGTAAATGAAGA+AGG + chr8.3:49029959-49029978 MS.gene32288:CDS 20.0%
!!! ACAATAATAAAAGCATGATA+TGG - chr8.3:49029174-49029193 None:intergenic 20.0%
!!! CATGCTTTTATTATTGTATT+TGG + chr8.3:49029177-49029196 MS.gene32288:intron 20.0%
! AAAAGACTTGTGAAATATGT+CGG - chr8.3:49029942-49029961 None:intergenic 25.0%
! AAGAACAAAGATCGATATTT+AGG - chr8.3:49029265-49029284 None:intergenic 25.0%
! CCAAAAGAAATCTTGAATTT+CGG - chr8.3:49029812-49029831 None:intergenic 25.0%
! GACAAAAGAAGCAAATTTAT+GGG + chr8.3:49029379-49029398 MS.gene32288:CDS 25.0%
! GTTAAACTATTAAATGACTC+AGG - chr8.3:49029446-49029465 None:intergenic 25.0%
! TGACAAAAGAAGCAAATTTA+TGG + chr8.3:49029378-49029397 MS.gene32288:CDS 25.0%
!! CGAAATTCAAGATTTCTTTT+GGG + chr8.3:49029810-49029829 MS.gene32288:CDS 25.0%
!! TATGATTTTCACATTCTCAA+TGG + chr8.3:49029542-49029561 MS.gene32288:CDS 25.0%
CTCTGATCAAAAACAAGAAA+GGG - chr8.3:49030075-49030094 None:intergenic 30.0%
GAAATCAACTGAAGCAATAT+TGG - chr8.3:49029102-49029121 None:intergenic 30.0%
GCAAATGCACTATACTTTAA+AGG + chr8.3:49029479-49029498 MS.gene32288:CDS 30.0%
GGTTTCTTTGTATTCTTGTT+TGG - chr8.3:49028808-49028827 None:intergenic 30.0%
TAATGGCGAAAATACAACAT+TGG - chr8.3:49028829-49028848 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG - chr8.3:49030076-49030095 None:intergenic 30.0%
TTGTTTGGAGAACAAATGTT+TGG - chr8.3:49028793-49028812 None:intergenic 30.0%
! CCGAAATTCAAGATTTCTTT+TGG + chr8.3:49029809-49029828 MS.gene32288:CDS 30.0%
AATCAGTAGCCACAATTTCT+CGG - chr8.3:49029073-49029092 None:intergenic 35.0%
ACTGATATGCTAAAAGAGCT+AGG + chr8.3:49029842-49029861 MS.gene32288:CDS 35.0%
ATTCCTTCAATCCAAATCCA+CGG + chr8.3:49028917-49028936 MS.gene32288:CDS 35.0%
CAGTATATCAGTGTTCTTGA+TGG + chr8.3:49029605-49029624 MS.gene32288:CDS 35.0%
CTGGAACCATACTCTTTATT+GGG + chr8.3:49030104-49030123 MS.gene32288:CDS 35.0%
GAAATATGTCGGACACATAA+AGG - chr8.3:49029931-49029950 None:intergenic 35.0%
GTGTTCCAAGAACTTAGATT+CGG - chr8.3:49029747-49029766 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG + chr8.3:49030085-49030104 MS.gene32288:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG + chr8.3:49029692-49029711 MS.gene32288:CDS 35.0%
! AAAGTCGTTTAGATTTTCCG+TGG - chr8.3:49028937-49028956 None:intergenic 35.0%
! AACAATCCATCTTTTGCATC+AGG - chr8.3:49029701-49029720 None:intergenic 35.0%
! CACTATACTTTAAAGGAGTG+TGG + chr8.3:49029486-49029505 MS.gene32288:CDS 35.0%
! CATTTTTGTCAAAGCTCCTT+CGG - chr8.3:49029885-49029904 None:intergenic 35.0%
! GTTTAGATTTTCCGTGGATT+TGG - chr8.3:49028931-49028950 None:intergenic 35.0%
! TCTGGAACCATACTCTTTAT+TGG + chr8.3:49030103-49030122 MS.gene32288:CDS 35.0%
! TTCAGTTGATTTCGTTAACG+AGG + chr8.3:49029109-49029128 MS.gene32288:CDS 35.0%
!! GAAAGAACTTGTTGTTGTGT+GGG - chr8.3:49028897-49028916 None:intergenic 35.0%
!! TGAAAGAACTTGTTGTTGTG+TGG - chr8.3:49028898-49028917 None:intergenic 35.0%
AGATCGATATTTAGGCCACT+TGG - chr8.3:49029257-49029276 None:intergenic 40.0%
AGCTTCCGAATCTAAGTTCT+TGG + chr8.3:49029739-49029758 MS.gene32288:CDS 40.0%
ATCAATCACCAACCTAACCA+AGG + chr8.3:49028752-49028771 MS.gene32288:CDS 40.0%
ATCTCATAGCTGGTCATGAA+GGG - chr8.3:49029584-49029603 None:intergenic 40.0%
CAAAGAAACCTTGGTTAGGT+TGG - chr8.3:49028763-49028782 None:intergenic 40.0%
CACTTGCCCAATAAAGAGTA+TGG - chr8.3:49030113-49030132 None:intergenic 40.0%
CTTGAATTTCGGAATCCTGA+AGG - chr8.3:49029801-49029820 None:intergenic 40.0%
GATATACTGCATCTCATAGC+TGG - chr8.3:49029594-49029613 None:intergenic 40.0%
GGCTTTCCTTAATGGTATGT+GGG + chr8.3:49029016-49029035 MS.gene32288:CDS 40.0%
GTTCAACCCACATACCATTA+AGG - chr8.3:49029025-49029044 None:intergenic 40.0%
TCAGCTACGAAGTTTATCAG+TGG - chr8.3:49030049-49030068 None:intergenic 40.0%
TGCATTTGCAAAGATGAGCT+TGG - chr8.3:49029468-49029487 None:intergenic 40.0%
TGGCTTTCCTTAATGGTATG+TGG + chr8.3:49029015-49029034 MS.gene32288:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + chr8.3:49029398-49029417 MS.gene32288:CDS 40.0%
TGGTCAAAGAAACCTTGGTT+AGG - chr8.3:49028767-49028786 None:intergenic 40.0%
TTGTCTTCACCTTGCGTATA+AGG - chr8.3:49029650-49029669 None:intergenic 40.0%
TTTCCGTGGATTTGGATTGA+AGG - chr8.3:49028923-49028942 None:intergenic 40.0%
! AAAAGACTTAGGGTACCAAG+TGG + chr8.3:49029239-49029258 MS.gene32288:intron 40.0%
! AGGAGCTTTGACAAAAATGG+TGG + chr8.3:49029886-49029905 MS.gene32288:CDS 40.0%
! CGAAGGAGCTTTGACAAAAA+TGG + chr8.3:49029883-49029902 MS.gene32288:CDS 40.0%
! CTTTAAAGGAGTGTGGAAAG+AGG + chr8.3:49029493-49029512 MS.gene32288:CDS 40.0%
AACACGACATGGAGCGATAA+TGG - chr8.3:49028846-49028865 None:intergenic 45.0%
ACCTTGCTTCCGAGAAATTG+TGG + chr8.3:49029061-49029080 MS.gene32288:CDS 45.0%
AGCCTATGGGGATAGCTATA+TGG + chr8.3:49029988-49030007 MS.gene32288:CDS 45.0%
ATAGCTATCCCCATAGGCTT+CGG - chr8.3:49029987-49030006 None:intergenic 45.0%
CAAGCTTCCTCACGAATTAG+TGG + chr8.3:49029766-49029785 MS.gene32288:CDS 45.0%
CATCTCATAGCTGGTCATGA+AGG - chr8.3:49029585-49029604 None:intergenic 45.0%
CCAACTTCCACTAATTCGTG+AGG - chr8.3:49029776-49029795 None:intergenic 45.0%
CCATTAAGGAAAGCCAACGA+AGG - chr8.3:49029011-49029030 None:intergenic 45.0%
CCTATGGGGATAGCTATATG+GGG + chr8.3:49029990-49030009 MS.gene32288:CDS 45.0%
CCTCACGAATTAGTGGAAGT+TGG + chr8.3:49029773-49029792 MS.gene32288:CDS 45.0%
CGATGATGCTTAACACGACA+TGG - chr8.3:49028857-49028876 None:intergenic 45.0%
CTTCGTCTTCCTTATACGCA+AGG + chr8.3:49029638-49029657 MS.gene32288:CDS 45.0%
CTTGCGTATAAGGAAGACGA+AGG - chr8.3:49029640-49029659 None:intergenic 45.0%
GCCTATGGGGATAGCTATAT+GGG + chr8.3:49029989-49030008 MS.gene32288:CDS 45.0%
GCTACGAAGTTTATCAGTGG+CGG - chr8.3:49030046-49030065 None:intergenic 45.0%
GGAGAACAAATGTTTGGCGA+TGG - chr8.3:49028787-49028806 None:intergenic 45.0%
GTCATGAAGGGAACCTTGAT+CGG - chr8.3:49029572-49029591 None:intergenic 45.0%
TATGCTAAAAGAGCTAGGCG+TGG + chr8.3:49029847-49029866 MS.gene32288:CDS 45.0%
TCATGAAGGGAACCTTGATC+GGG - chr8.3:49029571-49029590 None:intergenic 45.0%
!! AAGAAGGTACCGAAGCCTAT+GGG + chr8.3:49029975-49029994 MS.gene32288:CDS 45.0%
!! CCTTCGTTGGCTTTCCTTAA+TGG + chr8.3:49029008-49029027 MS.gene32288:CDS 45.0%
!! GTGGTTTTACCTTTCTCCGA+AGG + chr8.3:49029866-49029885 MS.gene32288:CDS 45.0%
CCCCATATAGCTATCCCCAT+AGG - chr8.3:49029993-49030012 None:intergenic 50.0%
GCCACAATTTCTCGGAAGCA+AGG - chr8.3:49029065-49029084 None:intergenic 50.0%
GGCGATGGTCAAAGAAACCT+TGG - chr8.3:49028772-49028791 None:intergenic 50.0%
GTCAAAGCTCCTTCGGAGAA+AGG - chr8.3:49029878-49029897 None:intergenic 50.0%
GTGTTAAGCATCATCGCTGC+TGG + chr8.3:49028861-49028880 MS.gene32288:CDS 50.0%
TCTCAATGGTAGCCCGATCA+AGG + chr8.3:49029556-49029575 MS.gene32288:CDS 50.0%
! TTTATCAGTGGCGGAGTACG+AGG - chr8.3:49030037-49030056 None:intergenic 50.0%
!! AGAAGGTACCGAAGCCTATG+GGG + chr8.3:49029976-49029995 MS.gene32288:CDS 50.0%
!! GAAGAAGGTACCGAAGCCTA+TGG + chr8.3:49029974-49029993 MS.gene32288:CDS 50.0%
!! TAGTGGAAGTTGGTGCCTTC+AGG + chr8.3:49029783-49029802 MS.gene32288:CDS 50.0%
CACGGAGGAAACAAGCTGAG+AGG - chr8.3:49028961-49028980 None:intergenic 55.0%
GAAAGCCAACGAAGGTCCTC+CGG - chr8.3:49029003-49029022 None:intergenic 55.0%
! AGGAGCAGCATTGGAGAGCA+CGG - chr8.3:49028979-49028998 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+AGG + chr8.3:49028870-49028889 MS.gene32288:CDS 55.0%
CTCTCCAATGCTGCTCCTGC+CGG + chr8.3:49028981-49029000 MS.gene32288:CDS 60.0%
! AGCAGCATTGGAGAGCACGG+AGG - chr8.3:49028976-49028995 None:intergenic 60.0%
TCCAATGCTGCTCCTGCCGG+AGG + chr8.3:49028984-49029003 MS.gene32288:CDS 65.0%
TCCTCCGGCAGGAGCAGCAT+TGG - chr8.3:49028988-49029007 None:intergenic 65.0%
TCCTGCCGGAGGACCTTCGT+TGG + chr8.3:49028995-49029014 MS.gene32288:CDS 65.0%
GCCAACGAAGGTCCTCCGGC+AGG - chr8.3:49028999-49029018 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 49028735 49030153 49028735 ID=MS.gene32288
chr8.3 mRNA 49028735 49030153 49028735 ID=MS.gene32288.t1;Parent=MS.gene32288
chr8.3 exon 49028735 49029130 49028735 ID=MS.gene32288.t1.exon1;Parent=MS.gene32288.t1
chr8.3 CDS 49028735 49029130 49028735 ID=cds.MS.gene32288.t1;Parent=MS.gene32288.t1
chr8.3 exon 49029368 49030153 49029368 ID=MS.gene32288.t1.exon2;Parent=MS.gene32288.t1
chr8.3 CDS 49029368 49030153 49029368 ID=cds.MS.gene32288.t1;Parent=MS.gene32288.t1
Gene Sequence

>MS.gene32288

ATGAATTTTCAGAGCGAATCAATCACCAACCTAACCAAGGTTTCTTTGACCATCGCCAAACATTTGTTCTCCAAACAAGAATACAAAGAAACCAATGTTGTATTTTCGCCATTATCGCTCCATGTCGTGTTAAGCATCATCGCTGCTGGCTCTGAAGGTCCCACACAACAACAAGTTCTTTCATTCCTTCAATCCAAATCCACGGAAAATCTAAACGACTTTGCCTCTCAGCTTGTTTCCTCCGTGCTCTCCAATGCTGCTCCTGCCGGAGGACCTTCGTTGGCTTTCCTTAATGGTATGTGGGTTGAACAATCACTTTCTCTTCAACCTTGCTTCCGAGAAATTGTGGCTACTGATTTCAAAGCCAATATTGCTTCAGTTGATTTCGTTAACGAGGTAAAATAATCTACAATCCATCTTTTTATTTATCTTGAATCCATATCATGCTTTTATTATTGTATTTGGTATTTTATTTTGGTTGCTAACACTTCAATATTATTTGATAAAAGACTTAGGGTACCAAGTGGCCTAAATATCGATCTTTGTTCTTGTTTCATTCTATTAAAATAAGTTGTTACTAATTTCAATTGATCATTTTGCACCGTTAATTTTATGTTTGATATTGTTTTAAAGGCTCTCGAAGTGACAAAAGAAGCAAATTTATGGGCTGAAAAAGAGACAAATGGTCTTATAAAAAATCTACTTTCACCTGAGTCATTTAATAGTTTAACCAAGCTCATCTTTGCAAATGCACTATACTTTAAAGGAGTGTGGAAAGAGGAGTTTGATACTTCAGATACAAGAGACTATGATTTTCACATTCTCAATGGTAGCCCGATCAAGGTTCCCTTCATGACCAGCTATGAGATGCAGTATATCAGTGTTCTTGATGGTTTTAAAGTCCTTCGTCTTCCTTATACGCAAGGTGAAGACAAACGTCGATTCTCTATTTACTTTTTTCTTCCTGATGCAAAAGATGGATTGTTAGCTTTGATTAAGAAGCTAGCTTCCGAATCTAAGTTCTTGGAACACAAGCTTCCTCACGAATTAGTGGAAGTTGGTGCCTTCAGGATTCCGAAATTCAAGATTTCTTTTGGGCTTGAATGTACTGATATGCTAAAAGAGCTAGGCGTGGTTTTACCTTTCTCCGAAGGAGCTTTGACAAAAATGGTGGACTCTCGTATTGCTCAAAACCTTTATGTGTCCGACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGTACCGAAGCCTATGGGGATAGCTATATGGGGACAAGTTTGTGTGATGATTCTCCTCGTACTCCGCCACTGATAAACTTCGTAGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACCATACTCTTTATTGGGCAAGTGCTCAATCCTCTTGACAAATGA
Protein sequence

>MS.gene32288.t1

MNFQSESITNLTKVSLTIAKHLFSKQEYKETNVVFSPLSLHVVLSIIAAGSEGPTQQQVLSFLQSKSTENLNDFASQLVSSVLSNAAPAGGPSLAFLNGMWVEQSLSLQPCFREIVATDFKANIASVDFVNEALEVTKEANLWAEKETNGLIKNLLSPESFNSLTKLIFANALYFKGVWKEEFDTSDTRDYDFHILNGSPIKVPFMTSYEMQYISVLDGFKVLRLPYTQGEDKRRFSIYFFLPDAKDGLLALIKKLASESKFLEHKLPHELVEVGAFRIPKFKISFGLECTDMLKELGVVLPFSEGALTKMVDSRIAQNLYVSDIFHKSFIEVNEEGTEAYGDSYMGTSLCDDSPRTPPLINFVADHPFLFLIREDLSGTILFIGQVLNPLDK