AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32289

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32289.t1 MTR_8g461160 92.152 395 28 2 1 393 1 394 0.0 712
MS.gene32289.t1 MTR_3g101180 70.500 400 111 3 1 393 1 400 0.0 558
MS.gene32289.t1 MTR_3g101010 68.653 386 118 2 6 391 5 387 0.0 526
MS.gene32289.t1 MTR_7g451890 66.071 392 132 1 2 392 10 401 0.0 512
MS.gene32289.t1 MTR_7g047780 65.306 392 135 1 2 392 10 401 0.0 511
MS.gene32289.t1 MTR_3g018740 67.095 389 122 3 6 393 5 388 0.0 510
MS.gene32289.t1 MTR_7g050750 65.816 392 133 1 2 392 4 395 1.38e-180 508
MS.gene32289.t1 MTR_4g045707 64.394 396 126 3 1 391 1 386 7.60e-180 505
MS.gene32289.t1 MTR_7g050810 64.213 394 136 2 2 392 12 403 1.36e-175 495
MS.gene32289.t1 MTR_8g027395 63.472 386 134 2 6 391 17 395 2.70e-172 486
MS.gene32289.t1 MTR_3g101130 61.637 391 146 1 1 391 1 387 4.96e-172 486
MS.gene32289.t1 MTR_3g101030 62.217 397 129 5 12 391 35 427 2.03e-171 486
MS.gene32289.t1 MTR_3g048000 61.697 389 125 4 4 391 25 390 1.27e-163 464
MS.gene32289.t1 MTR_8g027420 60.881 386 133 3 6 391 6 373 4.21e-161 457
MS.gene32289.t1 MTR_4g088525 59.892 369 143 1 23 391 4 367 2.78e-159 452
MS.gene32289.t1 MTR_3g015620 60.406 394 119 6 6 392 16 379 4.71e-155 442
MS.gene32289.t1 MTR_3g101050 60.102 391 136 5 4 393 27 398 2.43e-153 439
MS.gene32289.t1 MTR_2g046030 58.163 392 152 5 6 393 5 388 2.39e-152 436
MS.gene32289.t1 MTR_2g045980 58.163 392 152 5 6 393 5 388 4.22e-151 432
MS.gene32289.t1 MTR_4g088535 57.662 385 140 4 4 388 5 366 2.92e-148 425
MS.gene32289.t1 MTR_3g101200 54.822 394 150 4 1 393 26 392 1.83e-137 398
MS.gene32289.t1 MTR_3g102920 53.616 401 132 7 4 391 49 408 3.90e-131 382
MS.gene32289.t1 MTR_3g101190 55.769 364 93 3 30 391 13 310 1.12e-129 375
MS.gene32289.t1 MTR_7g050830 56.918 318 106 2 2 299 12 318 1.02e-121 355
MS.gene32289.t1 MTR_3g100995 64.591 257 87 2 136 392 11 263 3.13e-116 339
MS.gene32289.t1 MTR_3g015760 67.939 262 73 5 135 392 26 280 5.71e-111 326
MS.gene32289.t1 MTR_3g018747 63.019 265 77 5 132 393 9 255 1.24e-108 319
MS.gene32289.t1 MTR_3g100010 52.903 310 98 3 33 309 42 336 4.28e-104 311
MS.gene32289.t1 MTR_3g100520 60.181 221 72 4 173 391 1 207 3.92e-85 258
MS.gene32289.t1 MTR_3g111160 59.729 221 84 3 173 391 1 218 1.17e-82 252
MS.gene32289.t1 MTR_3g114310 41.117 394 206 11 12 390 25 407 1.74e-82 258
MS.gene32289.t1 MTR_3g101110 57.676 241 69 5 132 367 68 280 2.82e-80 248
MS.gene32289.t1 MTR_3g099970 62.755 196 56 2 132 327 20 198 3.33e-80 245
MS.gene32289.t1 MTR_2g046410 58.373 209 80 3 189 393 144 349 1.43e-75 238
MS.gene32289.t1 MTR_3g101150 68.790 157 46 2 238 391 1 157 1.04e-67 211
MS.gene32289.t1 MTR_3g101020 56.150 187 54 2 206 392 1 159 4.12e-61 194
MS.gene32289.t1 MTR_3g102870 59.355 155 63 0 197 351 3 157 3.71e-56 182
MS.gene32289.t1 MTR_3g111150 53.631 179 57 2 8 186 1 153 6.58e-56 181
MS.gene32289.t1 MTR_3g100990 52.000 175 65 3 6 180 5 160 2.26e-44 160
MS.gene32289.t1 MTR_4g093550 64.130 92 29 2 6 97 6 93 4.62e-26 100
MS.gene32289.t1 MTR_6g046890 61.972 71 24 1 29 99 20 87 4.29e-19 83.2
MS.gene32289.t1 MTR_3g101140 59.701 67 27 0 325 391 48 114 2.02e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32289.t1 AT1G47710 50.891 393 179 5 6 391 5 390 5.75e-136 394
MS.gene32289.t1 AT1G47710 50.891 393 179 5 6 391 32 417 2.27e-135 394
MS.gene32289.t1 AT3G45220 44.162 394 203 5 6 390 5 390 3.82e-117 346
MS.gene32289.t1 AT2G25240 46.015 389 195 8 6 390 5 382 4.78e-114 338
MS.gene32289.t1 AT2G26390 45.455 396 191 8 6 390 5 386 5.76e-110 328
MS.gene32289.t1 AT1G64030 43.959 389 192 5 6 390 5 371 3.82e-101 305
MS.gene32289.t1 AT1G62170 42.359 373 175 5 29 390 88 431 1.02e-98 300
MS.gene32289.t1 AT2G14540 42.526 388 197 5 6 390 33 397 8.29e-97 295
MS.gene32289.t1 AT1G62170 38.916 406 175 6 29 390 88 464 4.99e-92 285
MS.gene32289.t1 AT2G35580 41.989 362 180 8 36 390 33 371 1.23e-91 280
MS.gene32289.t1 AT1G64010 44.545 220 95 5 173 390 1 195 3.63e-58 188
MS.gene32289.t1 AT1G64010 43.902 205 88 5 188 390 2 181 3.27e-51 170
MS.gene32289.t1 AT1G62160 40.000 200 91 6 196 390 43 218 7.72e-37 134
MS.gene32289.t1 AT1G63280 55.932 118 48 2 129 244 5 120 1.48e-36 129
MS.gene32289.t1 AT1G51330 50.000 112 53 1 130 238 29 140 1.32e-26 105
MS.gene32289.t1 AT1G64020 33.036 112 72 3 13 123 12 121 6.64e-13 65.5

Find 84 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTATACTTTAA+AGG 0.146562 8.3:+49040607 MS.gene32289:CDS
CCGAAATTCAAGATTTCTTT+TGG 0.171353 8.3:+49040937 MS.gene32289:CDS
TCTGGAACCATACTCTTTAT+TGG 0.177113 8.3:+49041231 MS.gene32289:CDS
CCTTCGTTGGCTTTCCTTAA+TGG 0.196609 8.3:+49040136 MS.gene32289:CDS
TGACAAAAGAAGCAAATTTA+TGG 0.225380 8.3:+49040506 MS.gene32289:CDS
AGCTTCCGAATCTAAGTTCT+TGG 0.253184 8.3:+49040867 MS.gene32289:CDS
TTGTCTTCACCTTGCGTATA+AGG 0.282322 8.3:-49040775 None:intergenic
AGCCTATGGGGATAGCTATA+TGG 0.293869 8.3:+49041116 MS.gene32289:CDS
CTGGAACCATACTCTTTATT+GGG 0.301041 8.3:+49041232 MS.gene32289:CDS
GAAATCAACTGAAGCAATAT+TGG 0.319245 8.3:-49040227 None:intergenic
GTTCAACCCACATACCATTA+AGG 0.320214 8.3:-49040150 None:intergenic
GGTTTCTTTGTATTCTTGTT+TGG 0.323549 8.3:-49039933 None:intergenic
TAGTGGAAGTTGGTGCCTTC+AGG 0.326051 8.3:+49040911 MS.gene32289:CDS
GAAATATGTCGGACACATAA+AGG 0.333781 8.3:-49041056 None:intergenic
CCAAAAGAAATCTTGAATTT+CGG 0.337465 8.3:-49040937 None:intergenic
AACACGACATGGAGCGATAA+TGG 0.341348 8.3:-49039971 None:intergenic
CAGTATATCAGTGTTCTTGA+TGG 0.364509 8.3:+49040733 MS.gene32289:CDS
CACTTGCCCAATAAAGAGTA+TGG 0.383332 8.3:-49041238 None:intergenic
GCCTATGGGGATAGCTATAT+GGG 0.397587 8.3:+49041117 MS.gene32289:CDS
TGGCTTTCCTTAATGGTATG+TGG 0.399840 8.3:+49040143 MS.gene32289:CDS
CTCTCCAATGCTGCTCCTGC+CGG 0.400280 8.3:+49040109 MS.gene32289:CDS
GTCAAAGCTCCTTCGGAGAA+AGG 0.403461 8.3:-49041003 None:intergenic
AATCAGTAGCCACAATTTCT+CGG 0.405064 8.3:-49040198 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.410392 8.3:+49040820 MS.gene32289:CDS
TTGTTTGGAGAACAAATGTT+TGG 0.415802 8.3:-49039918 None:intergenic
CAAGCTTCCTCACGAATTAG+TGG 0.418068 8.3:+49040894 MS.gene32289:CDS
GACAAAAGAAGCAAATTTAT+GGG 0.422156 8.3:+49040507 MS.gene32289:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 8.3:+49041213 MS.gene32289:CDS
TCCTCCGGCAGGAGCAGCAT+TGG 0.439334 8.3:-49040113 None:intergenic
TTTATTGAAGTAAATGAAGA+AGG 0.453378 8.3:+49041087 MS.gene32289:CDS
GAAGAAGGTACCGAAGCCTA+TGG 0.478272 8.3:+49041102 MS.gene32289:CDS
GTCATGAAGGGAACCTTGAT+CGG 0.480422 8.3:-49040697 None:intergenic
GTGTTCCAAGAACTTAGATT+CGG 0.487041 8.3:-49040872 None:intergenic
ATAGCTATCCCCATAGGCTT+CGG 0.489239 8.3:-49041112 None:intergenic
CAAAGAAACCTTGGTTAGGT+TGG 0.494142 8.3:-49039888 None:intergenic
GTGTTAAGCATCATCGCTGC+TGG 0.498106 8.3:+49039989 MS.gene32289:CDS
TTTCCGTGGATTTGGATTGA+AGG 0.501160 8.3:-49040048 None:intergenic
TGCATTTGCAAAGATGAGCT+TGG 0.502146 8.3:-49040593 None:intergenic
TGGTCAAAGAAACCTTGGTT+AGG 0.502434 8.3:-49039892 None:intergenic
AGGAGCAGCATTGGAGAGCA+CGG 0.507039 8.3:-49040104 None:intergenic
ATCATCGCTGCTGGCTCTGA+AGG 0.507136 8.3:+49039998 MS.gene32289:CDS
GGCTTTCCTTAATGGTATGT+GGG 0.508630 8.3:+49040144 MS.gene32289:CDS
TCCTGCCGGAGGACCTTCGT+TGG 0.508638 8.3:+49040123 MS.gene32289:CDS
GATATACTGCATCTCATAGC+TGG 0.512249 8.3:-49040719 None:intergenic
TCTCAATGGTAGCCCGATCA+AGG 0.512612 8.3:+49040684 MS.gene32289:CDS
GAAAGCCAACGAAGGTCCTC+CGG 0.516566 8.3:-49040128 None:intergenic
AAGAAGGTACCGAAGCCTAT+GGG 0.518386 8.3:+49041103 MS.gene32289:CDS
GCCAACGAAGGTCCTCCGGC+AGG 0.525135 8.3:-49040124 None:intergenic
GTTAAACTATTAAATGACTC+AGG 0.526215 8.3:-49040571 None:intergenic
CGATGATGCTTAACACGACA+TGG 0.527522 8.3:-49039982 None:intergenic
CATCTCATAGCTGGTCATGA+AGG 0.531770 8.3:-49040710 None:intergenic
GGCGATGGTCAAAGAAACCT+TGG 0.531986 8.3:-49039897 None:intergenic
ACCTTGCTTCCGAGAAATTG+TGG 0.534223 8.3:+49040189 MS.gene32289:CDS
AAAAGACTTGTGAAATATGT+CGG 0.536698 8.3:-49041067 None:intergenic
CTTGAATTTCGGAATCCTGA+AGG 0.538497 8.3:-49040926 None:intergenic
CTTTAAAGGAGTGTGGAAAG+AGG 0.539924 8.3:+49040621 MS.gene32289:CDS
TCCAATGCTGCTCCTGCCGG+AGG 0.541408 8.3:+49040112 MS.gene32289:CDS
TCATGAAGGGAACCTTGATC+GGG 0.545518 8.3:-49040696 None:intergenic
ATTCCTTCAATCCAAATCCA+CGG 0.547231 8.3:+49040045 MS.gene32289:CDS
CTACAAGATCATTTGTCAAG+AGG 0.553832 8.3:-49041267 None:intergenic
GCCACAATTTCTCGGAAGCA+AGG 0.555079 8.3:-49040190 None:intergenic
CTTCGTCTTCCTTATACGCA+AGG 0.561814 8.3:+49040766 MS.gene32289:CDS
CCTCACGAATTAGTGGAAGT+TGG 0.563985 8.3:+49040901 MS.gene32289:CDS
TAATGGCGAAAATACAACAT+TGG 0.566785 8.3:-49039954 None:intergenic
CACTATACTTTAAAGGAGTG+TGG 0.566946 8.3:+49040614 MS.gene32289:CDS
ACTGATATGCTAAAAGAGCT+AGG 0.568471 8.3:+49040970 MS.gene32289:CDS
GGAGAACAAATGTTTGGCGA+TGG 0.575181 8.3:-49039912 None:intergenic
ATCTCATAGCTGGTCATGAA+GGG 0.593119 8.3:-49040709 None:intergenic
TTTATCAGTGGCGGAGTACG+AGG 0.593449 8.3:-49041162 None:intergenic
TGAAAGAACTTGTTGTTGTG+TGG 0.600880 8.3:-49040023 None:intergenic
TTCAGTTGATTTCGTTAACG+AGG 0.607634 8.3:+49040237 MS.gene32289:CDS
GAAAGAACTTGTTGTTGTGT+GGG 0.609834 8.3:-49040022 None:intergenic
CCCCATATAGCTATCCCCAT+AGG 0.626236 8.3:-49041118 None:intergenic
GCTACGAAGTTTATCAGTGG+CGG 0.644094 8.3:-49041171 None:intergenic
CACGGAGGAAACAAGCTGAG+AGG 0.674325 8.3:-49040086 None:intergenic
AGAAGGTACCGAAGCCTATG+GGG 0.675963 8.3:+49041104 MS.gene32289:CDS
ATCAATCACCAACCTAACCA+AGG 0.679210 8.3:+49039880 MS.gene32289:CDS
CCATTAAGGAAAGCCAACGA+AGG 0.699382 8.3:-49040136 None:intergenic
CCAACTTCCACTAATTCGTG+AGG 0.701450 8.3:-49040901 None:intergenic
TCAGCTACGAAGTTTATCAG+TGG 0.706881 8.3:-49041174 None:intergenic
CCTATGGGGATAGCTATATG+GGG 0.715773 8.3:+49041118 MS.gene32289:CDS
AGCAGCATTGGAGAGCACGG+AGG 0.716416 8.3:-49040101 None:intergenic
CTTGCGTATAAGGAAGACGA+AGG 0.726910 8.3:-49040765 None:intergenic
TATGCTAAAAGAGCTAGGCG+TGG 0.728186 8.3:+49040975 MS.gene32289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAACATAAAATTAA+CGG - chr8.3:49040467-49040486 None:intergenic 10.0%
!! ATTATTTGATAAAAGACTTA+GGG + chr8.3:49040357-49040376 MS.gene32289:intron 15.0%
!! ATTCAAGATAAATAAAAAGA+TGG - chr8.3:49040279-49040298 None:intergenic 15.0%
!! TATTATTTGATAAAAGACTT+AGG + chr8.3:49040356-49040375 MS.gene32289:intron 15.0%
!!! TATGTTTGATATTGTTTTAA+AGG + chr8.3:49040474-49040493 MS.gene32289:intron 15.0%
!!! TTGTATTTGGTATTTTATTT+TGG + chr8.3:49040318-49040337 MS.gene32289:intron 15.0%
!! TTTATTGAAGTAAATGAAGA+AGG + chr8.3:49041087-49041106 MS.gene32289:CDS 20.0%
!!! ACAATAATAAAAGCATGATA+TGG - chr8.3:49040302-49040321 None:intergenic 20.0%
!!! CATGCTTTTATTATTGTATT+TGG + chr8.3:49040305-49040324 MS.gene32289:intron 20.0%
! AAAAGACTTGTGAAATATGT+CGG - chr8.3:49041070-49041089 None:intergenic 25.0%
! AAGAACAAAGATCGATATTT+AGG - chr8.3:49040393-49040412 None:intergenic 25.0%
! CCAAAAGAAATCTTGAATTT+CGG - chr8.3:49040940-49040959 None:intergenic 25.0%
! GACAAAAGAAGCAAATTTAT+GGG + chr8.3:49040507-49040526 MS.gene32289:CDS 25.0%
! GTTAAACTATTAAATGACTC+AGG - chr8.3:49040574-49040593 None:intergenic 25.0%
! TGACAAAAGAAGCAAATTTA+TGG + chr8.3:49040506-49040525 MS.gene32289:CDS 25.0%
!! CGAAATTCAAGATTTCTTTT+GGG + chr8.3:49040938-49040957 MS.gene32289:CDS 25.0%
!! TATGATTTTCACATTCTCAA+TGG + chr8.3:49040670-49040689 MS.gene32289:CDS 25.0%
CTCTGATCAAAAACAAGAAA+GGG - chr8.3:49041203-49041222 None:intergenic 30.0%
GAAATCAACTGAAGCAATAT+TGG - chr8.3:49040230-49040249 None:intergenic 30.0%
GCAAATGCACTATACTTTAA+AGG + chr8.3:49040607-49040626 MS.gene32289:CDS 30.0%
GGTTTCTTTGTATTCTTGTT+TGG - chr8.3:49039936-49039955 None:intergenic 30.0%
TAATGGCGAAAATACAACAT+TGG - chr8.3:49039957-49039976 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG - chr8.3:49041204-49041223 None:intergenic 30.0%
TTGTTTGGAGAACAAATGTT+TGG - chr8.3:49039921-49039940 None:intergenic 30.0%
! CCGAAATTCAAGATTTCTTT+TGG + chr8.3:49040937-49040956 MS.gene32289:CDS 30.0%
AATCAGTAGCCACAATTTCT+CGG - chr8.3:49040201-49040220 None:intergenic 35.0%
ACTGATATGCTAAAAGAGCT+AGG + chr8.3:49040970-49040989 MS.gene32289:CDS 35.0%
ATTCCTTCAATCCAAATCCA+CGG + chr8.3:49040045-49040064 MS.gene32289:CDS 35.0%
CAGTATATCAGTGTTCTTGA+TGG + chr8.3:49040733-49040752 MS.gene32289:CDS 35.0%
CTGGAACCATACTCTTTATT+GGG + chr8.3:49041232-49041251 MS.gene32289:CDS 35.0%
GAAATATGTCGGACACATAA+AGG - chr8.3:49041059-49041078 None:intergenic 35.0%
GTGTTCCAAGAACTTAGATT+CGG - chr8.3:49040875-49040894 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG + chr8.3:49041213-49041232 MS.gene32289:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG + chr8.3:49040820-49040839 MS.gene32289:CDS 35.0%
! AAAGTCGTTTAGATTTTCCG+TGG - chr8.3:49040065-49040084 None:intergenic 35.0%
! AACAATCCATCTTTTGCATC+AGG - chr8.3:49040829-49040848 None:intergenic 35.0%
! CACTATACTTTAAAGGAGTG+TGG + chr8.3:49040614-49040633 MS.gene32289:CDS 35.0%
! CATTTTTGTCAAAGCTCCTT+CGG - chr8.3:49041013-49041032 None:intergenic 35.0%
! GTTTAGATTTTCCGTGGATT+TGG - chr8.3:49040059-49040078 None:intergenic 35.0%
! TCTGGAACCATACTCTTTAT+TGG + chr8.3:49041231-49041250 MS.gene32289:CDS 35.0%
! TTCAGTTGATTTCGTTAACG+AGG + chr8.3:49040237-49040256 MS.gene32289:CDS 35.0%
!! GAAAGAACTTGTTGTTGTGT+GGG - chr8.3:49040025-49040044 None:intergenic 35.0%
!! TGAAAGAACTTGTTGTTGTG+TGG - chr8.3:49040026-49040045 None:intergenic 35.0%
AGATCGATATTTAGGCCACT+TGG - chr8.3:49040385-49040404 None:intergenic 40.0%
AGCTTCCGAATCTAAGTTCT+TGG + chr8.3:49040867-49040886 MS.gene32289:CDS 40.0%
ATCAATCACCAACCTAACCA+AGG + chr8.3:49039880-49039899 MS.gene32289:CDS 40.0%
ATCTCATAGCTGGTCATGAA+GGG - chr8.3:49040712-49040731 None:intergenic 40.0%
CAAAGAAACCTTGGTTAGGT+TGG - chr8.3:49039891-49039910 None:intergenic 40.0%
CACTTGCCCAATAAAGAGTA+TGG - chr8.3:49041241-49041260 None:intergenic 40.0%
CTTGAATTTCGGAATCCTGA+AGG - chr8.3:49040929-49040948 None:intergenic 40.0%
GATATACTGCATCTCATAGC+TGG - chr8.3:49040722-49040741 None:intergenic 40.0%
GGCTTTCCTTAATGGTATGT+GGG + chr8.3:49040144-49040163 MS.gene32289:CDS 40.0%
GTTCAACCCACATACCATTA+AGG - chr8.3:49040153-49040172 None:intergenic 40.0%
TCAGCTACGAAGTTTATCAG+TGG - chr8.3:49041177-49041196 None:intergenic 40.0%
TGCATTTGCAAAGATGAGCT+TGG - chr8.3:49040596-49040615 None:intergenic 40.0%
TGGCTTTCCTTAATGGTATG+TGG + chr8.3:49040143-49040162 MS.gene32289:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + chr8.3:49040526-49040545 MS.gene32289:CDS 40.0%
TGGTCAAAGAAACCTTGGTT+AGG - chr8.3:49039895-49039914 None:intergenic 40.0%
TTGTCTTCACCTTGCGTATA+AGG - chr8.3:49040778-49040797 None:intergenic 40.0%
TTTCCGTGGATTTGGATTGA+AGG - chr8.3:49040051-49040070 None:intergenic 40.0%
! AAAAGACTTAGGGTACCAAG+TGG + chr8.3:49040367-49040386 MS.gene32289:intron 40.0%
! AGGAGCTTTGACAAAAATGG+TGG + chr8.3:49041014-49041033 MS.gene32289:CDS 40.0%
! CGAAGGAGCTTTGACAAAAA+TGG + chr8.3:49041011-49041030 MS.gene32289:CDS 40.0%
! CTTTAAAGGAGTGTGGAAAG+AGG + chr8.3:49040621-49040640 MS.gene32289:CDS 40.0%
AACACGACATGGAGCGATAA+TGG - chr8.3:49039974-49039993 None:intergenic 45.0%
ACCTTGCTTCCGAGAAATTG+TGG + chr8.3:49040189-49040208 MS.gene32289:CDS 45.0%
AGCCTATGGGGATAGCTATA+TGG + chr8.3:49041116-49041135 MS.gene32289:CDS 45.0%
ATAGCTATCCCCATAGGCTT+CGG - chr8.3:49041115-49041134 None:intergenic 45.0%
CAAGCTTCCTCACGAATTAG+TGG + chr8.3:49040894-49040913 MS.gene32289:CDS 45.0%
CATCTCATAGCTGGTCATGA+AGG - chr8.3:49040713-49040732 None:intergenic 45.0%
CCAACTTCCACTAATTCGTG+AGG - chr8.3:49040904-49040923 None:intergenic 45.0%
CCATTAAGGAAAGCCAACGA+AGG - chr8.3:49040139-49040158 None:intergenic 45.0%
CCTATGGGGATAGCTATATG+GGG + chr8.3:49041118-49041137 MS.gene32289:CDS 45.0%
CCTCACGAATTAGTGGAAGT+TGG + chr8.3:49040901-49040920 MS.gene32289:CDS 45.0%
CGATGATGCTTAACACGACA+TGG - chr8.3:49039985-49040004 None:intergenic 45.0%
CTTCGTCTTCCTTATACGCA+AGG + chr8.3:49040766-49040785 MS.gene32289:CDS 45.0%
CTTGCGTATAAGGAAGACGA+AGG - chr8.3:49040768-49040787 None:intergenic 45.0%
GCCTATGGGGATAGCTATAT+GGG + chr8.3:49041117-49041136 MS.gene32289:CDS 45.0%
GCTACGAAGTTTATCAGTGG+CGG - chr8.3:49041174-49041193 None:intergenic 45.0%
GGAGAACAAATGTTTGGCGA+TGG - chr8.3:49039915-49039934 None:intergenic 45.0%
GTCATGAAGGGAACCTTGAT+CGG - chr8.3:49040700-49040719 None:intergenic 45.0%
TATGCTAAAAGAGCTAGGCG+TGG + chr8.3:49040975-49040994 MS.gene32289:CDS 45.0%
TCATGAAGGGAACCTTGATC+GGG - chr8.3:49040699-49040718 None:intergenic 45.0%
!! AAGAAGGTACCGAAGCCTAT+GGG + chr8.3:49041103-49041122 MS.gene32289:CDS 45.0%
!! CCTTCGTTGGCTTTCCTTAA+TGG + chr8.3:49040136-49040155 MS.gene32289:CDS 45.0%
!! GTGGTTTTACCTTTCTCCGA+AGG + chr8.3:49040994-49041013 MS.gene32289:CDS 45.0%
CCCCATATAGCTATCCCCAT+AGG - chr8.3:49041121-49041140 None:intergenic 50.0%
GCCACAATTTCTCGGAAGCA+AGG - chr8.3:49040193-49040212 None:intergenic 50.0%
GGCGATGGTCAAAGAAACCT+TGG - chr8.3:49039900-49039919 None:intergenic 50.0%
GTCAAAGCTCCTTCGGAGAA+AGG - chr8.3:49041006-49041025 None:intergenic 50.0%
GTGTTAAGCATCATCGCTGC+TGG + chr8.3:49039989-49040008 MS.gene32289:CDS 50.0%
TCTCAATGGTAGCCCGATCA+AGG + chr8.3:49040684-49040703 MS.gene32289:CDS 50.0%
! TTTATCAGTGGCGGAGTACG+AGG - chr8.3:49041165-49041184 None:intergenic 50.0%
!! AGAAGGTACCGAAGCCTATG+GGG + chr8.3:49041104-49041123 MS.gene32289:CDS 50.0%
!! GAAGAAGGTACCGAAGCCTA+TGG + chr8.3:49041102-49041121 MS.gene32289:CDS 50.0%
!! TAGTGGAAGTTGGTGCCTTC+AGG + chr8.3:49040911-49040930 MS.gene32289:CDS 50.0%
CACGGAGGAAACAAGCTGAG+AGG - chr8.3:49040089-49040108 None:intergenic 55.0%
GAAAGCCAACGAAGGTCCTC+CGG - chr8.3:49040131-49040150 None:intergenic 55.0%
! AGGAGCAGCATTGGAGAGCA+CGG - chr8.3:49040107-49040126 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+AGG + chr8.3:49039998-49040017 MS.gene32289:CDS 55.0%
CTCTCCAATGCTGCTCCTGC+CGG + chr8.3:49040109-49040128 MS.gene32289:CDS 60.0%
! AGCAGCATTGGAGAGCACGG+AGG - chr8.3:49040104-49040123 None:intergenic 60.0%
TCCAATGCTGCTCCTGCCGG+AGG + chr8.3:49040112-49040131 MS.gene32289:CDS 65.0%
TCCTCCGGCAGGAGCAGCAT+TGG - chr8.3:49040116-49040135 None:intergenic 65.0%
TCCTGCCGGAGGACCTTCGT+TGG + chr8.3:49040123-49040142 MS.gene32289:CDS 65.0%
GCCAACGAAGGTCCTCCGGC+AGG - chr8.3:49040127-49040146 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 49039863 49041281 49039863 ID=MS.gene32289
chr8.3 mRNA 49039863 49041281 49039863 ID=MS.gene32289.t1;Parent=MS.gene32289
chr8.3 exon 49039863 49040258 49039863 ID=MS.gene32289.t1.exon1;Parent=MS.gene32289.t1
chr8.3 CDS 49039863 49040258 49039863 ID=cds.MS.gene32289.t1;Parent=MS.gene32289.t1
chr8.3 exon 49040496 49041281 49040496 ID=MS.gene32289.t1.exon2;Parent=MS.gene32289.t1
chr8.3 CDS 49040496 49041281 49040496 ID=cds.MS.gene32289.t1;Parent=MS.gene32289.t1
Gene Sequence

>MS.gene32289

ATGAATTTTCAGAGCGAATCAATCACCAACCTAACCAAGGTTTCTTTGACCATCGCCAAACATTTGTTCTCCAAACAAGAATACAAAGAAACCAATGTTGTATTTTCGCCATTATCGCTCCATGTCGTGTTAAGCATCATCGCTGCTGGCTCTGAAGGTCCCACACAACAACAAGTTCTTTCATTCCTTCAATCCAAATCCACGGAAAATCTAAACGACTTTGCCTCTCAGCTTGTTTCCTCCGTGCTCTCCAATGCTGCTCCTGCCGGAGGACCTTCGTTGGCTTTCCTTAATGGTATGTGGGTTGAACAATCACTTTCTCTTCAACCTTGCTTCCGAGAAATTGTGGCTACTGATTTCAAAGCCAATATTGCTTCAGTTGATTTCGTTAACGAGGTAAAATAATCTACAATCCATCTTTTTATTTATCTTGAATCCATATCATGCTTTTATTATTGTATTTGGTATTTTATTTTGGTTGCTAACACTTCAATATTATTTGATAAAAGACTTAGGGTACCAAGTGGCCTAAATATCGATCTTTGTTCTTGTTTCATTCTATTAAAATAAGTTGTTACTAATTTCAATTGATCATTTTGCACCGTTAATTTTATGTTTGATATTGTTTTAAAGGCTCTCGAAGTGACAAAAGAAGCAAATTTATGGGCTGAAAAAGAGACAAATGGTCTTATAAAAAATCTACTTTCACCTGAGTCATTTAATAGTTTAACCAAGCTCATCTTTGCAAATGCACTATACTTTAAAGGAGTGTGGAAAGAGGAGTTTGATACTTCAGATACAAGAGACTATGATTTTCACATTCTCAATGGTAGCCCGATCAAGGTTCCCTTCATGACCAGCTATGAGATGCAGTATATCAGTGTTCTTGATGGTTTTAAAGTCCTTCGTCTTCCTTATACGCAAGGTGAAGACAAACGTCGATTCTCTATTTACTTTTTTCTTCCTGATGCAAAAGATGGATTGTTAGCTTTGATTAAGAAGCTAGCTTCCGAATCTAAGTTCTTGGAACACAAGCTTCCTCACGAATTAGTGGAAGTTGGTGCCTTCAGGATTCCGAAATTCAAGATTTCTTTTGGGCTTGAATGTACTGATATGCTAAAAGAGCTAGGCGTGGTTTTACCTTTCTCCGAAGGAGCTTTGACAAAAATGGTGGACTCTCGTATTGCTCAAAACCTTTATGTGTCCGACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGTACCGAAGCCTATGGGGATAGCTATATGGGGACAAGTTTGTGTGATGATTCTCCTCGTACTCCGCCACTGATAAACTTCGTAGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACCATACTCTTTATTGGGCAAGTGCTCAATCCTCTTGACAAATGA
Protein sequence

>MS.gene32289.t1

MNFQSESITNLTKVSLTIAKHLFSKQEYKETNVVFSPLSLHVVLSIIAAGSEGPTQQQVLSFLQSKSTENLNDFASQLVSSVLSNAAPAGGPSLAFLNGMWVEQSLSLQPCFREIVATDFKANIASVDFVNEALEVTKEANLWAEKETNGLIKNLLSPESFNSLTKLIFANALYFKGVWKEEFDTSDTRDYDFHILNGSPIKVPFMTSYEMQYISVLDGFKVLRLPYTQGEDKRRFSIYFFLPDAKDGLLALIKKLASESKFLEHKLPHELVEVGAFRIPKFKISFGLECTDMLKELGVVLPFSEGALTKMVDSRIAQNLYVSDIFHKSFIEVNEEGTEAYGDSYMGTSLCDDSPRTPPLINFVADHPFLFLIREDLSGTILFIGQVLNPLDK