AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32292

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32292.t1 MTR_8g461160 92.152 395 28 2 1 393 1 394 0.0 713
MS.gene32292.t1 MTR_3g101180 70.750 400 110 3 1 393 1 400 0.0 562
MS.gene32292.t1 MTR_3g101010 68.653 386 118 2 6 391 5 387 0.0 526
MS.gene32292.t1 MTR_7g451890 66.327 392 131 1 2 392 10 401 0.0 511
MS.gene32292.t1 MTR_3g018740 67.095 389 122 3 6 393 5 388 0.0 511
MS.gene32292.t1 MTR_7g047780 65.561 392 134 1 2 392 10 401 0.0 510
MS.gene32292.t1 MTR_7g050750 66.071 392 132 1 2 392 4 395 3.27e-180 506
MS.gene32292.t1 MTR_4g045707 64.394 396 126 3 1 391 1 386 4.35e-180 506
MS.gene32292.t1 MTR_7g050810 64.467 394 135 2 2 392 12 403 1.83e-175 495
MS.gene32292.t1 MTR_3g101130 61.893 391 145 1 1 391 1 387 1.83e-173 489
MS.gene32292.t1 MTR_8g027395 63.472 386 134 2 6 391 17 395 1.02e-172 488
MS.gene32292.t1 MTR_3g101030 62.217 397 129 5 12 391 35 427 3.79e-171 485
MS.gene32292.t1 MTR_3g048000 61.697 389 125 4 4 391 25 390 5.11e-164 465
MS.gene32292.t1 MTR_8g027420 60.881 386 133 3 6 391 6 373 1.35e-161 459
MS.gene32292.t1 MTR_4g088525 59.892 369 143 1 23 391 4 367 2.07e-159 453
MS.gene32292.t1 MTR_3g015620 60.406 394 119 6 6 392 16 379 4.71e-155 442
MS.gene32292.t1 MTR_3g101050 60.102 391 136 5 4 393 27 398 4.73e-154 440
MS.gene32292.t1 MTR_2g046030 58.270 393 150 5 6 393 5 388 2.16e-153 438
MS.gene32292.t1 MTR_2g045980 58.270 393 150 5 6 393 5 388 6.74e-152 434
MS.gene32292.t1 MTR_4g088535 57.662 385 140 4 4 388 5 366 5.20e-149 427
MS.gene32292.t1 MTR_3g101200 55.076 394 149 4 1 393 26 392 7.93e-139 401
MS.gene32292.t1 MTR_3g102920 53.234 402 132 7 4 391 49 408 4.74e-131 382
MS.gene32292.t1 MTR_3g101190 56.044 364 92 3 30 391 13 310 6.08e-131 378
MS.gene32292.t1 MTR_7g050830 56.918 318 106 2 2 299 12 318 1.23e-121 355
MS.gene32292.t1 MTR_3g100995 64.591 257 87 2 136 392 11 263 3.13e-116 339
MS.gene32292.t1 MTR_3g015760 67.939 262 73 5 135 392 26 280 1.09e-110 326
MS.gene32292.t1 MTR_3g018747 63.019 265 77 5 132 393 9 255 6.47e-109 320
MS.gene32292.t1 MTR_3g100010 52.215 316 103 3 33 315 42 342 5.31e-105 313
MS.gene32292.t1 MTR_3g100520 60.181 221 72 4 173 391 1 207 6.60e-85 257
MS.gene32292.t1 MTR_3g111160 59.729 221 84 3 173 391 1 218 6.22e-83 253
MS.gene32292.t1 MTR_3g114310 41.117 394 206 11 12 390 25 407 1.12e-82 259
MS.gene32292.t1 MTR_3g099970 62.755 196 56 2 132 327 20 198 6.67e-80 244
MS.gene32292.t1 MTR_3g101110 57.676 241 69 5 132 367 68 280 7.70e-80 247
MS.gene32292.t1 MTR_2g046410 58.095 210 79 3 189 393 144 349 7.40e-77 241
MS.gene32292.t1 MTR_3g101150 69.427 157 45 2 238 391 1 157 6.30e-69 214
MS.gene32292.t1 MTR_3g101020 56.150 187 54 2 206 392 1 159 4.21e-61 194
MS.gene32292.t1 MTR_3g102870 59.355 155 63 0 197 351 3 157 3.60e-56 182
MS.gene32292.t1 MTR_3g111150 53.631 179 57 2 8 186 1 153 7.90e-56 181
MS.gene32292.t1 MTR_3g100990 51.412 177 67 3 4 180 3 160 1.90e-44 161
MS.gene32292.t1 MTR_4g093550 64.130 92 29 2 6 97 6 93 4.92e-26 100
MS.gene32292.t1 MTR_6g046890 61.972 71 24 1 29 99 20 87 4.42e-19 83.2
MS.gene32292.t1 MTR_3g101140 61.194 67 26 0 325 391 48 114 7.82e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32292.t1 AT1G47710 51.289 388 185 4 6 391 5 390 1.50e-135 393
MS.gene32292.t1 AT1G47710 50.891 393 179 5 6 391 32 417 8.86e-135 392
MS.gene32292.t1 AT3G45220 44.924 394 200 6 6 390 5 390 1.53e-118 350
MS.gene32292.t1 AT2G25240 46.015 389 195 8 6 390 5 382 6.27e-114 338
MS.gene32292.t1 AT2G26390 45.455 396 191 8 6 390 5 386 5.69e-110 328
MS.gene32292.t1 AT1G64030 43.959 389 192 5 6 390 5 371 2.98e-101 305
MS.gene32292.t1 AT1G62170 42.627 373 174 5 29 390 88 431 4.00e-100 304
MS.gene32292.t1 AT2G14540 42.526 388 197 5 6 390 33 397 8.75e-97 295
MS.gene32292.t1 AT1G62170 39.163 406 174 6 29 390 88 464 1.44e-93 288
MS.gene32292.t1 AT2G35580 42.308 364 176 9 36 390 33 371 1.62e-92 283
MS.gene32292.t1 AT1G64010 44.545 220 95 5 173 390 1 195 5.06e-58 188
MS.gene32292.t1 AT1G64010 43.902 205 88 5 188 390 2 181 3.76e-51 170
MS.gene32292.t1 AT1G62160 40.513 195 89 6 198 390 49 218 8.30e-37 133
MS.gene32292.t1 AT1G63280 55.932 118 48 2 129 244 5 120 1.62e-36 129
MS.gene32292.t1 AT1G51330 50.000 112 53 1 130 238 29 140 1.45e-26 105
MS.gene32292.t1 AT1G64020 33.036 112 72 3 13 123 12 121 6.32e-13 65.5

Find 85 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGCACTATACTTTAA+AGG 0.146562 8.3:+49090831 MS.gene32292:CDS
CCGAAATTCAAGATTTCTTT+TGG 0.171353 8.3:+49091161 MS.gene32292:CDS
TCTGGAACCATACTCTTTAT+TGG 0.177113 8.3:+49091455 MS.gene32292:CDS
CCTTCGTTGGCTTTCCTTAA+TGG 0.196609 8.3:+49090360 MS.gene32292:CDS
TGACAAAAGAAGCAAATTTA+TGG 0.225380 8.3:+49090730 MS.gene32292:CDS
AGCTTCCGAATCTAAGTTCT+TGG 0.253184 8.3:+49091091 MS.gene32292:CDS
TTGTCTTCACCTTGCGTATA+AGG 0.282322 8.3:-49090999 None:intergenic
AGCCTATGGGGATAGCTATA+TGG 0.293869 8.3:+49091340 MS.gene32292:CDS
CTGGAACCATACTCTTTATT+GGG 0.301041 8.3:+49091456 MS.gene32292:CDS
GAAATCAACTGAAGCAATAT+TGG 0.319245 8.3:-49090451 None:intergenic
GTTCAACCCACATACCATTA+AGG 0.320214 8.3:-49090374 None:intergenic
GGTTTCTTTGTATTCTTGTT+TGG 0.323549 8.3:-49090157 None:intergenic
TAGTGGAAGTTGGTGCCTTC+AGG 0.326051 8.3:+49091135 MS.gene32292:CDS
GAAATATGTCGGACACATAA+AGG 0.333781 8.3:-49091280 None:intergenic
CCAAAAGAAATCTTGAATTT+CGG 0.337465 8.3:-49091161 None:intergenic
AACACGACATGGAGCGATAA+TGG 0.341348 8.3:-49090195 None:intergenic
CAGTATATCAGTGTTCTTGA+TGG 0.364509 8.3:+49090957 MS.gene32292:CDS
CACTTGCCCAATAAAGAGTA+TGG 0.383332 8.3:-49091462 None:intergenic
GCCTATGGGGATAGCTATAT+GGG 0.397587 8.3:+49091341 MS.gene32292:CDS
TGGCTTTCCTTAATGGTATG+TGG 0.399840 8.3:+49090367 MS.gene32292:CDS
CTCTCCAATGCTGCTCCTGC+CGG 0.400280 8.3:+49090333 MS.gene32292:CDS
GTCAAAGCTCCTTCGGAGAA+AGG 0.403461 8.3:-49091227 None:intergenic
AATCAGTAGCCACAATTTCT+CGG 0.405064 8.3:-49090422 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.410392 8.3:+49091044 MS.gene32292:CDS
TTGTTTGGAGAACAAATGTT+TGG 0.415802 8.3:-49090142 None:intergenic
CAAGCTTCCTCACGAATTAG+TGG 0.418068 8.3:+49091118 MS.gene32292:CDS
GACAAAAGAAGCAAATTTAT+GGG 0.422156 8.3:+49090731 MS.gene32292:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 8.3:+49091437 MS.gene32292:CDS
TCCTCCGGCAGGAGCAGCAT+TGG 0.439334 8.3:-49090337 None:intergenic
TTTATTGAAGTAAATGAAGA+AGG 0.453378 8.3:+49091311 MS.gene32292:CDS
TGATCAGCTACGAAGTTTAT+CGG 0.470382 8.3:-49091401 None:intergenic
GAAGAAGGTACCGAAGCCTA+TGG 0.478272 8.3:+49091326 MS.gene32292:CDS
GTCATGAAGGGAACCTTGAT+CGG 0.480422 8.3:-49090921 None:intergenic
GTGTTCCAAGAACTTAGATT+CGG 0.487041 8.3:-49091096 None:intergenic
ATAGCTATCCCCATAGGCTT+CGG 0.489239 8.3:-49091336 None:intergenic
CAAAGAAACCTTGGTTAGGT+TGG 0.494142 8.3:-49090112 None:intergenic
GTGTTAAGCATCATCGCTGC+TGG 0.498106 8.3:+49090213 MS.gene32292:CDS
TTTCCGTGGATTTGGATTGA+AGG 0.501160 8.3:-49090272 None:intergenic
TGCATTTGCAAAGATGAGCT+TGG 0.502146 8.3:-49090817 None:intergenic
TGGTCAAAGAAACCTTGGTT+AGG 0.502434 8.3:-49090116 None:intergenic
AGGAGCAGCATTGGAGAGCA+CGG 0.507039 8.3:-49090328 None:intergenic
ATCATCGCTGCTGGCTCTGA+AGG 0.507136 8.3:+49090222 MS.gene32292:CDS
GGCTTTCCTTAATGGTATGT+GGG 0.508630 8.3:+49090368 MS.gene32292:CDS
TCCTGCCGGAGGACCTTCGT+TGG 0.508638 8.3:+49090347 MS.gene32292:CDS
GATATACTGCATCTCATAGC+TGG 0.512249 8.3:-49090943 None:intergenic
TCTCAATGGTAGCCCGATCA+AGG 0.512612 8.3:+49090908 MS.gene32292:CDS
GAAAGCCAACGAAGGTCCTC+CGG 0.516566 8.3:-49090352 None:intergenic
AAGAAGGTACCGAAGCCTAT+GGG 0.518386 8.3:+49091327 MS.gene32292:CDS
GCCAACGAAGGTCCTCCGGC+AGG 0.525135 8.3:-49090348 None:intergenic
GTTAAACTATTAAATGACTC+AGG 0.526215 8.3:-49090795 None:intergenic
CGATGATGCTTAACACGACA+TGG 0.527522 8.3:-49090206 None:intergenic
CATCTCATAGCTGGTCATGA+AGG 0.531770 8.3:-49090934 None:intergenic
GGCGATGGTCAAAGAAACCT+TGG 0.531986 8.3:-49090121 None:intergenic
ACCTTGCTTCCGAGAAATTG+TGG 0.534223 8.3:+49090413 MS.gene32292:CDS
AAAAGACTTGTGAAATATGT+CGG 0.536698 8.3:-49091291 None:intergenic
CTTGAATTTCGGAATCCTGA+AGG 0.538497 8.3:-49091150 None:intergenic
CTTTAAAGGAGTGTGGAAAG+AGG 0.539924 8.3:+49090845 MS.gene32292:CDS
TCCAATGCTGCTCCTGCCGG+AGG 0.541408 8.3:+49090336 MS.gene32292:CDS
TCATGAAGGGAACCTTGATC+GGG 0.545518 8.3:-49090920 None:intergenic
ATTCCTTCAATCCAAATCCA+CGG 0.547231 8.3:+49090269 MS.gene32292:CDS
CTACAAGATCATTTGTCAAG+AGG 0.553832 8.3:-49091491 None:intergenic
GCCACAATTTCTCGGAAGCA+AGG 0.555079 8.3:-49090414 None:intergenic
TTTATCGGTGGCGGAGTACG+AGG 0.556228 8.3:-49091386 None:intergenic
CTTCGTCTTCCTTATACGCA+AGG 0.561814 8.3:+49090990 MS.gene32292:CDS
CCTCACGAATTAGTGGAAGT+TGG 0.563985 8.3:+49091125 MS.gene32292:CDS
TAATGGCGAAAATACAACAT+TGG 0.566785 8.3:-49090178 None:intergenic
CACTATACTTTAAAGGAGTG+TGG 0.566946 8.3:+49090838 MS.gene32292:CDS
ACTGATATGCTAAAAGAGCT+AGG 0.568471 8.3:+49091194 MS.gene32292:CDS
GGAGAACAAATGTTTGGCGA+TGG 0.575181 8.3:-49090136 None:intergenic
GCTACGAAGTTTATCGGTGG+CGG 0.590090 8.3:-49091395 None:intergenic
ATCTCATAGCTGGTCATGAA+GGG 0.593119 8.3:-49090933 None:intergenic
TGAAAGAACTTGTTGTTGTG+TGG 0.600880 8.3:-49090247 None:intergenic
TTCAGTTGATTTCGTTAACG+AGG 0.607634 8.3:+49090461 MS.gene32292:CDS
GAAAGAACTTGTTGTTGTGT+GGG 0.609834 8.3:-49090246 None:intergenic
CCCCATATAGCTATCCCCAT+AGG 0.626236 8.3:-49091342 None:intergenic
CACGGAGGAAACAAGCTGAG+AGG 0.674325 8.3:-49090310 None:intergenic
AGAAGGTACCGAAGCCTATG+GGG 0.675963 8.3:+49091328 MS.gene32292:CDS
ATCAATCACCAACCTAACCA+AGG 0.679210 8.3:+49090104 MS.gene32292:CDS
CCATTAAGGAAAGCCAACGA+AGG 0.699382 8.3:-49090360 None:intergenic
CCAACTTCCACTAATTCGTG+AGG 0.701450 8.3:-49091125 None:intergenic
CCTATGGGGATAGCTATATG+GGG 0.715773 8.3:+49091342 MS.gene32292:CDS
AGCAGCATTGGAGAGCACGG+AGG 0.716416 8.3:-49090325 None:intergenic
TCAGCTACGAAGTTTATCGG+TGG 0.717176 8.3:-49091398 None:intergenic
CTTGCGTATAAGGAAGACGA+AGG 0.726910 8.3:-49090989 None:intergenic
TATGCTAAAAGAGCTAGGCG+TGG 0.728186 8.3:+49091199 MS.gene32292:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAAACATAAAATTAA+CGG - chr8.3:49090691-49090710 None:intergenic 10.0%
!! ATTATTTGATAAAAGACTTA+GGG + chr8.3:49090581-49090600 MS.gene32292:intron 15.0%
!! ATTCAAGATAAATAAAAAGA+TGG - chr8.3:49090503-49090522 None:intergenic 15.0%
!! TATTATTTGATAAAAGACTT+AGG + chr8.3:49090580-49090599 MS.gene32292:intron 15.0%
!!! TATGTTTGATATTGTTTTAA+AGG + chr8.3:49090698-49090717 MS.gene32292:intron 15.0%
!!! TTGTATTTGGTATTTTATTT+TGG + chr8.3:49090542-49090561 MS.gene32292:intron 15.0%
!! TTTATTGAAGTAAATGAAGA+AGG + chr8.3:49091311-49091330 MS.gene32292:CDS 20.0%
!!! ACAATAATAAAAGCATGATA+TGG - chr8.3:49090526-49090545 None:intergenic 20.0%
!!! CATGCTTTTATTATTGTATT+TGG + chr8.3:49090529-49090548 MS.gene32292:intron 20.0%
! AAAAGACTTGTGAAATATGT+CGG - chr8.3:49091294-49091313 None:intergenic 25.0%
! AAGAACAAAGATCGATATTT+AGG - chr8.3:49090617-49090636 None:intergenic 25.0%
! CCAAAAGAAATCTTGAATTT+CGG - chr8.3:49091164-49091183 None:intergenic 25.0%
! GACAAAAGAAGCAAATTTAT+GGG + chr8.3:49090731-49090750 MS.gene32292:CDS 25.0%
! GTTAAACTATTAAATGACTC+AGG - chr8.3:49090798-49090817 None:intergenic 25.0%
! TGACAAAAGAAGCAAATTTA+TGG + chr8.3:49090730-49090749 MS.gene32292:CDS 25.0%
!! CGAAATTCAAGATTTCTTTT+GGG + chr8.3:49091162-49091181 MS.gene32292:CDS 25.0%
!! TATGATTTTCACATTCTCAA+TGG + chr8.3:49090894-49090913 MS.gene32292:CDS 25.0%
CTCTGATCAAAAACAAGAAA+GGG - chr8.3:49091427-49091446 None:intergenic 30.0%
GAAATCAACTGAAGCAATAT+TGG - chr8.3:49090454-49090473 None:intergenic 30.0%
GCAAATGCACTATACTTTAA+AGG + chr8.3:49090831-49090850 MS.gene32292:CDS 30.0%
GGTTTCTTTGTATTCTTGTT+TGG - chr8.3:49090160-49090179 None:intergenic 30.0%
TAATGGCGAAAATACAACAT+TGG - chr8.3:49090181-49090200 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG - chr8.3:49091428-49091447 None:intergenic 30.0%
TTGTTTGGAGAACAAATGTT+TGG - chr8.3:49090145-49090164 None:intergenic 30.0%
! CCGAAATTCAAGATTTCTTT+TGG + chr8.3:49091161-49091180 MS.gene32292:CDS 30.0%
AATCAGTAGCCACAATTTCT+CGG - chr8.3:49090425-49090444 None:intergenic 35.0%
ACTGATATGCTAAAAGAGCT+AGG + chr8.3:49091194-49091213 MS.gene32292:CDS 35.0%
ATTCCTTCAATCCAAATCCA+CGG + chr8.3:49090269-49090288 MS.gene32292:CDS 35.0%
CAGTATATCAGTGTTCTTGA+TGG + chr8.3:49090957-49090976 MS.gene32292:CDS 35.0%
CTGGAACCATACTCTTTATT+GGG + chr8.3:49091456-49091475 MS.gene32292:CDS 35.0%
GAAATATGTCGGACACATAA+AGG - chr8.3:49091283-49091302 None:intergenic 35.0%
GTGTTCCAAGAACTTAGATT+CGG - chr8.3:49091099-49091118 None:intergenic 35.0%
TGATCAGCTACGAAGTTTAT+CGG - chr8.3:49091404-49091423 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG + chr8.3:49091437-49091456 MS.gene32292:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG + chr8.3:49091044-49091063 MS.gene32292:CDS 35.0%
! AAAGTCGTTTAGATTTTCCG+TGG - chr8.3:49090289-49090308 None:intergenic 35.0%
! AACAATCCATCTTTTGCATC+AGG - chr8.3:49091053-49091072 None:intergenic 35.0%
! CACTATACTTTAAAGGAGTG+TGG + chr8.3:49090838-49090857 MS.gene32292:CDS 35.0%
! CATTTTTGTCAAAGCTCCTT+CGG - chr8.3:49091237-49091256 None:intergenic 35.0%
! GTTTAGATTTTCCGTGGATT+TGG - chr8.3:49090283-49090302 None:intergenic 35.0%
! TCTGGAACCATACTCTTTAT+TGG + chr8.3:49091455-49091474 MS.gene32292:CDS 35.0%
! TTCAGTTGATTTCGTTAACG+AGG + chr8.3:49090461-49090480 MS.gene32292:CDS 35.0%
!! GAAAGAACTTGTTGTTGTGT+GGG - chr8.3:49090249-49090268 None:intergenic 35.0%
!! TGAAAGAACTTGTTGTTGTG+TGG - chr8.3:49090250-49090269 None:intergenic 35.0%
AGATCGATATTTAGGCCACT+TGG - chr8.3:49090609-49090628 None:intergenic 40.0%
AGCTTCCGAATCTAAGTTCT+TGG + chr8.3:49091091-49091110 MS.gene32292:CDS 40.0%
ATCAATCACCAACCTAACCA+AGG + chr8.3:49090104-49090123 MS.gene32292:CDS 40.0%
ATCTCATAGCTGGTCATGAA+GGG - chr8.3:49090936-49090955 None:intergenic 40.0%
CAAAGAAACCTTGGTTAGGT+TGG - chr8.3:49090115-49090134 None:intergenic 40.0%
CACTTGCCCAATAAAGAGTA+TGG - chr8.3:49091465-49091484 None:intergenic 40.0%
CTTGAATTTCGGAATCCTGA+AGG - chr8.3:49091153-49091172 None:intergenic 40.0%
GATATACTGCATCTCATAGC+TGG - chr8.3:49090946-49090965 None:intergenic 40.0%
GGCTTTCCTTAATGGTATGT+GGG + chr8.3:49090368-49090387 MS.gene32292:CDS 40.0%
GTTCAACCCACATACCATTA+AGG - chr8.3:49090377-49090396 None:intergenic 40.0%
TGCATTTGCAAAGATGAGCT+TGG - chr8.3:49090820-49090839 None:intergenic 40.0%
TGGCTTTCCTTAATGGTATG+TGG + chr8.3:49090367-49090386 MS.gene32292:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + chr8.3:49090750-49090769 MS.gene32292:CDS 40.0%
TGGTCAAAGAAACCTTGGTT+AGG - chr8.3:49090119-49090138 None:intergenic 40.0%
TTGTCTTCACCTTGCGTATA+AGG - chr8.3:49091002-49091021 None:intergenic 40.0%
TTTCCGTGGATTTGGATTGA+AGG - chr8.3:49090275-49090294 None:intergenic 40.0%
! AAAAGACTTAGGGTACCAAG+TGG + chr8.3:49090591-49090610 MS.gene32292:intron 40.0%
! AGGAGCTTTGACAAAAATGG+TGG + chr8.3:49091238-49091257 MS.gene32292:CDS 40.0%
! CGAAGGAGCTTTGACAAAAA+TGG + chr8.3:49091235-49091254 MS.gene32292:CDS 40.0%
! CTTTAAAGGAGTGTGGAAAG+AGG + chr8.3:49090845-49090864 MS.gene32292:CDS 40.0%
AACACGACATGGAGCGATAA+TGG - chr8.3:49090198-49090217 None:intergenic 45.0%
ACCTTGCTTCCGAGAAATTG+TGG + chr8.3:49090413-49090432 MS.gene32292:CDS 45.0%
AGCCTATGGGGATAGCTATA+TGG + chr8.3:49091340-49091359 MS.gene32292:CDS 45.0%
ATAGCTATCCCCATAGGCTT+CGG - chr8.3:49091339-49091358 None:intergenic 45.0%
CAAGCTTCCTCACGAATTAG+TGG + chr8.3:49091118-49091137 MS.gene32292:CDS 45.0%
CATCTCATAGCTGGTCATGA+AGG - chr8.3:49090937-49090956 None:intergenic 45.0%
CCAACTTCCACTAATTCGTG+AGG - chr8.3:49091128-49091147 None:intergenic 45.0%
CCATTAAGGAAAGCCAACGA+AGG - chr8.3:49090363-49090382 None:intergenic 45.0%
CCTATGGGGATAGCTATATG+GGG + chr8.3:49091342-49091361 MS.gene32292:CDS 45.0%
CCTCACGAATTAGTGGAAGT+TGG + chr8.3:49091125-49091144 MS.gene32292:CDS 45.0%
CGATGATGCTTAACACGACA+TGG - chr8.3:49090209-49090228 None:intergenic 45.0%
CTTCGTCTTCCTTATACGCA+AGG + chr8.3:49090990-49091009 MS.gene32292:CDS 45.0%
CTTGCGTATAAGGAAGACGA+AGG - chr8.3:49090992-49091011 None:intergenic 45.0%
GCCTATGGGGATAGCTATAT+GGG + chr8.3:49091341-49091360 MS.gene32292:CDS 45.0%
GGAGAACAAATGTTTGGCGA+TGG - chr8.3:49090139-49090158 None:intergenic 45.0%
GTCATGAAGGGAACCTTGAT+CGG - chr8.3:49090924-49090943 None:intergenic 45.0%
TATGCTAAAAGAGCTAGGCG+TGG + chr8.3:49091199-49091218 MS.gene32292:CDS 45.0%
TCAGCTACGAAGTTTATCGG+TGG - chr8.3:49091401-49091420 None:intergenic 45.0%
TCATGAAGGGAACCTTGATC+GGG - chr8.3:49090923-49090942 None:intergenic 45.0%
!! AAGAAGGTACCGAAGCCTAT+GGG + chr8.3:49091327-49091346 MS.gene32292:CDS 45.0%
!! CCTTCGTTGGCTTTCCTTAA+TGG + chr8.3:49090360-49090379 MS.gene32292:CDS 45.0%
!! GTGGTTTTACCTTTCTCCGA+AGG + chr8.3:49091218-49091237 MS.gene32292:CDS 45.0%
CCCCATATAGCTATCCCCAT+AGG - chr8.3:49091345-49091364 None:intergenic 50.0%
GCCACAATTTCTCGGAAGCA+AGG - chr8.3:49090417-49090436 None:intergenic 50.0%
GCTACGAAGTTTATCGGTGG+CGG - chr8.3:49091398-49091417 None:intergenic 50.0%
GGCGATGGTCAAAGAAACCT+TGG - chr8.3:49090124-49090143 None:intergenic 50.0%
GTCAAAGCTCCTTCGGAGAA+AGG - chr8.3:49091230-49091249 None:intergenic 50.0%
GTGTTAAGCATCATCGCTGC+TGG + chr8.3:49090213-49090232 MS.gene32292:CDS 50.0%
TCTCAATGGTAGCCCGATCA+AGG + chr8.3:49090908-49090927 MS.gene32292:CDS 50.0%
!! AGAAGGTACCGAAGCCTATG+GGG + chr8.3:49091328-49091347 MS.gene32292:CDS 50.0%
!! GAAGAAGGTACCGAAGCCTA+TGG + chr8.3:49091326-49091345 MS.gene32292:CDS 50.0%
!! TAGTGGAAGTTGGTGCCTTC+AGG + chr8.3:49091135-49091154 MS.gene32292:CDS 50.0%
CACGGAGGAAACAAGCTGAG+AGG - chr8.3:49090313-49090332 None:intergenic 55.0%
GAAAGCCAACGAAGGTCCTC+CGG - chr8.3:49090355-49090374 None:intergenic 55.0%
! AGGAGCAGCATTGGAGAGCA+CGG - chr8.3:49090331-49090350 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+AGG + chr8.3:49090222-49090241 MS.gene32292:CDS 55.0%
!! TTTATCGGTGGCGGAGTACG+AGG - chr8.3:49091389-49091408 None:intergenic 55.0%
CTCTCCAATGCTGCTCCTGC+CGG + chr8.3:49090333-49090352 MS.gene32292:CDS 60.0%
! AGCAGCATTGGAGAGCACGG+AGG - chr8.3:49090328-49090347 None:intergenic 60.0%
TCCAATGCTGCTCCTGCCGG+AGG + chr8.3:49090336-49090355 MS.gene32292:CDS 65.0%
TCCTCCGGCAGGAGCAGCAT+TGG - chr8.3:49090340-49090359 None:intergenic 65.0%
TCCTGCCGGAGGACCTTCGT+TGG + chr8.3:49090347-49090366 MS.gene32292:CDS 65.0%
GCCAACGAAGGTCCTCCGGC+AGG - chr8.3:49090351-49090370 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 49090087 49091505 49090087 ID=MS.gene32292
chr8.3 mRNA 49090087 49091505 49090087 ID=MS.gene32292.t1;Parent=MS.gene32292
chr8.3 exon 49090087 49090482 49090087 ID=MS.gene32292.t1.exon1;Parent=MS.gene32292.t1
chr8.3 CDS 49090087 49090482 49090087 ID=cds.MS.gene32292.t1;Parent=MS.gene32292.t1
chr8.3 exon 49090720 49091505 49090720 ID=MS.gene32292.t1.exon2;Parent=MS.gene32292.t1
chr8.3 CDS 49090720 49091505 49090720 ID=cds.MS.gene32292.t1;Parent=MS.gene32292.t1
Gene Sequence

>MS.gene32292

ATGAATTTTCAGAGCGAATCAATCACCAACCTAACCAAGGTTTCTTTGACCATCGCCAAACATTTGTTCTCCAAACAAGAATACAAAGAAACCAATGTTGTATTTTCGCCATTATCGCTCCATGTCGTGTTAAGCATCATCGCTGCTGGCTCTGAAGGTCCCACACAACAACAAGTTCTTTCATTCCTTCAATCCAAATCCACGGAAAATCTAAACGACTTTGCCTCTCAGCTTGTTTCCTCCGTGCTCTCCAATGCTGCTCCTGCCGGAGGACCTTCGTTGGCTTTCCTTAATGGTATGTGGGTTGAACAATCACTTTCTCTTCAACCTTGCTTCCGAGAAATTGTGGCTACTGATTTCAAAGCCAATATTGCTTCAGTTGATTTCGTTAACGAGGTAAAATAATCTACAATCCATCTTTTTATTTATCTTGAATCCATATCATGCTTTTATTATTGTATTTGGTATTTTATTTTGGTTGCTAACACTTCAATATTATTTGATAAAAGACTTAGGGTACCAAGTGGCCTAAATATCGATCTTTGTTCTTGTTTCATTCTATTAAAATAAGTTGTTACTAATTTCAATTGATCATTTTGCACCGTTAATTTTATGTTTGATATTGTTTTAAAGGCTCTCGAAGTGACAAAAGAAGCAAATTTATGGGCTGAAAAAGAGACAAATGGTCTTATAAAAAATCTACTTTCACCTGAGTCATTTAATAGTTTAACCAAGCTCATCTTTGCAAATGCACTATACTTTAAAGGAGTGTGGAAAGAGGAGTTTGATACTTCAGATACAAGAGACTATGATTTTCACATTCTCAATGGTAGCCCGATCAAGGTTCCCTTCATGACCAGCTATGAGATGCAGTATATCAGTGTTCTTGATGGTTTTAAAGTCCTTCGTCTTCCTTATACGCAAGGTGAAGACAAACGTCGATTCTCTATTTACTTTTTTCTTCCTGATGCAAAAGATGGATTGTTAGCTTTGATTAAGAAGCTAGCTTCCGAATCTAAGTTCTTGGAACACAAGCTTCCTCACGAATTAGTGGAAGTTGGTGCCTTCAGGATTCCGAAATTCAAGATTTCTTTTGGGCTTGAATGTACTGATATGCTAAAAGAGCTAGGCGTGGTTTTACCTTTCTCCGAAGGAGCTTTGACAAAAATGGTGGACTCTTGTATTGCTCAAAACCTTTATGTGTCCGACATATTTCACAAGTCTTTTATTGAAGTAAATGAAGAAGGTACCGAAGCCTATGGGGATAGCTATATGGGGACAAGTTTGTGTGATGATTCTCCTCGTACTCCGCCACCGATAAACTTCGTAGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACCATACTCTTTATTGGGCAAGTGCTCAATCCTCTTGACAAATGA
Protein sequence

>MS.gene32292.t1

MNFQSESITNLTKVSLTIAKHLFSKQEYKETNVVFSPLSLHVVLSIIAAGSEGPTQQQVLSFLQSKSTENLNDFASQLVSSVLSNAAPAGGPSLAFLNGMWVEQSLSLQPCFREIVATDFKANIASVDFVNEALEVTKEANLWAEKETNGLIKNLLSPESFNSLTKLIFANALYFKGVWKEEFDTSDTRDYDFHILNGSPIKVPFMTSYEMQYISVLDGFKVLRLPYTQGEDKRRFSIYFFLPDAKDGLLALIKKLASESKFLEHKLPHELVEVGAFRIPKFKISFGLECTDMLKELGVVLPFSEGALTKMVDSCIAQNLYVSDIFHKSFIEVNEEGTEAYGDSYMGTSLCDDSPRTPPPINFVADHPFLFLIREDLSGTILFIGQVLNPLDK