AlfalfaGEDB | MS.gene32722

M. sativa cultivar XinJiangDaYe / MS.gene32722

KEGG: -
GO: -
PFAM: PF13460.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32722.t1	XP_003603260.1	99	286	3	0	1	286	1	286	8.70E-155	556.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32722.t1	Q9FVR6	42.7	218	119	3	55	267	62	278	4.4e-46	186.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32722.t1	G7J970	99.0	286	3	0	1	286	1	286	6.3e-155	556.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052016	MS.gene32722	-0.809185	2.14E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32722.t1	MTR_3g105660	98.951	286	3	0	1	286	1	286	0.0	575
MS.gene32722.t1	MTR_5g029260	47.706	218	108	3	55	267	68	284	6.81e-59	190

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32722.t1	AT5G10730	78.472	288	59	2	1	286	1	287	2.16e-156	437
MS.gene32722.t1	AT5G15910	65.778	225	76	1	57	280	43	267	4.52e-94	279
MS.gene32722.t1	AT5G15910	64.758	227	79	1	57	282	2	228	1.66e-93	276
MS.gene32722.t1	AT1G32220	41.739	230	127	4	55	279	62	289	1.88e-59	191

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Find 82 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGAGTCTGGAAATGG+AGG	0.593028	3.1:+83376608	None:intergenic
AACAAACTTGAGTCTGGAAA+TGG	0.412046	3.1:+83376605	None:intergenic
AACAGACAAACCATGATTTA+AGG	0.154302	3.1:+83376126	None:intergenic
AAGATACCTCTTGGCATAGT+TGG	0.433914	3.1:-83371556	MS.gene32722:CDS
ACAAATGTCATCTGGTATAA+AGG	0.319047	3.1:-83375594	MS.gene32722:intron
ACAGCAGTAACATTGACAGG+AGG	0.758324	3.1:+83371020	None:intergenic
ACCTCTCCCGTTAATCGACA+CGG	0.652016	3.1:+83376388	None:intergenic
ACCTTCTCAGTTGGAGGTGG+GGG	0.443278	3.1:+83376305	None:intergenic
AGGCCCAACAAGTGGGATCT+GGG	0.518890	3.1:+83371052	None:intergenic
AGTACCTTCTCAGTTGGAGG+TGG	0.440769	3.1:+83376302	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCCCCCAAAAAAAAAA+TGG	+	chr3.1:83373751-83373770	None:intergenic	30.0%
AAACAACACATTTCTTAAGC+TGG	+	chr3.1:83376434-83376453	None:intergenic	30.0%
AAACATGGAAGTTTATGTGA+AGG	+	chr3.1:83375168-83375187	None:intergenic	30.0%
AAATAGTCAGAACTTTGATC+AGG	+	chr3.1:83376313-83376332	None:intergenic	30.0%
AACAGACAAACCATGATTTA+AGG	+	chr3.1:83371445-83371464	None:intergenic	30.0%
AATAGTCAGAACTTTGATCA+GGG	+	chr3.1:83376312-83376331	None:intergenic	30.0%
AATGAGTTAACCACAGAAAT+AGG	+	chr3.1:83375421-83375440	None:intergenic	30.0%
ACAAATGTCATCTGGTATAA+AGG	-	chr3.1:83371974-83371993	MS.gene32722:intron	30.0%
ACATTAGAGTTATGTTAGAG+TGG	+	chr3.1:83375239-83375258	None:intergenic	30.0%
ACCTGTTAGATAAAATGACT+TGG	+	chr3.1:83375380-83375399	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	83370920	83376670	83370920	ID=MS.gene32722
chr3.1	mRNA	83370920	83376670	83370920	ID=MS.gene32722.t1;Parent=MS.gene32722
chr3.1	exon	83376612	83376670	83376612	ID=MS.gene32722.t1.exon1;Parent=MS.gene32722.t1
chr3.1	CDS	83376612	83376670	83376612	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83376307	83376418	83376307	ID=MS.gene32722.t1.exon2;Parent=MS.gene32722.t1
chr3.1	CDS	83376307	83376418	83376307	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83376112	83376200	83376112	ID=MS.gene32722.t1.exon3;Parent=MS.gene32722.t1
chr3.1	CDS	83376112	83376200	83376112	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83375595	83375650	83375595	ID=MS.gene32722.t1.exon4;Parent=MS.gene32722.t1
chr3.1	CDS	83375595	83375650	83375595	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83375449	83375504	83375449	ID=MS.gene32722.t1.exon5;Parent=MS.gene32722.t1
chr3.1	CDS	83375449	83375504	83375449	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83374296	83374389	83374296	ID=MS.gene32722.t1.exon6;Parent=MS.gene32722.t1
chr3.1	CDS	83374296	83374389	83374296	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83372844	83372923	83372844	ID=MS.gene32722.t1.exon7;Parent=MS.gene32722.t1
chr3.1	CDS	83372844	83372923	83372844	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83371910	83371952	83371910	ID=MS.gene32722.t1.exon8;Parent=MS.gene32722.t1
chr3.1	CDS	83371910	83371952	83371910	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83371540	83371631	83371540	ID=MS.gene32722.t1.exon9;Parent=MS.gene32722.t1
chr3.1	CDS	83371540	83371631	83371540	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1
chr3.1	exon	83370920	83371099	83370920	ID=MS.gene32722.t1.exon10;Parent=MS.gene32722.t1
chr3.1	CDS	83370920	83371099	83370920	ID=cds.MS.gene32722.t1;Parent=MS.gene32722.t1

Gene Sequence

>MS.gene32722

ATGAAGACAATCATCTCGCGCTTGATTCATTCCTCACCATCCTCCATTTCCAGACTCAAGTTTGTTTTTTCTCTCTTTTCACTCTTCAAACCCTTTTTTTAATCATCATTTCAATTTTTTGTTCTATGATTCGTTTCAATATATGCTTGTTAGGGTTAGGGTTAGGTTACACATTCTAAGTTATAGTGTTGGTTGTTTTTGTGATTTGTGAATTGTTGATTGAATCGTGTGTTTTATTTTCTTACTTTGAAGTGCAATGGCCGTGTCGATTAACGGGAGAGGTTTCTGTACGGACTCTAACAAGATTGATGAGCCCTTTAAAGTTGAAGAAGCTGAGACTGTGCCCCCACCTCCAACTGAGAAGGTACTATCCTACAATCAATCATGCGTCCATTTTTGGATTTTGTATGGTTTCTGTATGGCTTTACTAACTTAGAAATTATGTATATGTGTTTTGAGTGTTGTTGAAGTTGCTTGTGCTGGGAGGTAATGGATTTGTTGGATCACATGTTTGTAGAGAAGCCTTAAATCATGGTTTGTCTGTTGCAAGTCTTAGCAGGTGTGGTTTTTTTTTTTCTTCATATTTTTTATCACTAGCACTCAAGAAACTATTAGGAAGGAGTTGGAAATTATTGAGTTGGGCCGAAATAAGGTGTACGATAGAACATTACATACAACATACATTACATACAATGTAATTTGATCCATGTAGCCGGCCCCCTAGTCGTTGTTGATCACTAGCAGTCCATAATGCTTTATGTTTTGTACCTCTTAATCTATGAAGCACTAACACAGATACAAACACTGATACCAAACACGACACTGACACGTCGACACCAGTAATTATTTGAGAAAATCATATGTGTCGGTGGCCTCATGGGAAGTTAAAATCAGTGGCCTGTTTTTTTTTTTTTTTTTTTTTGTTTTGGAAGGTCATGTACTCCTTTTCATATTTATTATATTATTTAGCATTTTGTTCATGAAACTAATCTGACTTGCCATTCATTTTTTTACCTTCAGGTCTGGCAAGTCATCCCTGCATGACTCCTGGGCTACAAATGTCATCTGGTATAAAGGTCTGTTTTTTCCCTTGCATTTCCTTGCAGACAACGTCCTTGTGGGACACAGAATTCTCTAATACGTTTAAATTATTTTCACATGATTAGGGAATCTCCTTTCAACTGAATCATTGAAAGAGGCTCTGAATGGGGTCACTGCTGTTGTAAGTTTCCCCTTGTCTTGTTAAAATGTCTGGTCAATATTTAGCAAATAAATAGGAAGCCTGTAGCCAAAGTGATTTTGGTTATTTTATGTTTCCTTTGCAATTTACAAGCTGTTGCTTTTGGTTTAACCAATATTTTTGACGAGGATCTCCCGTGCTTTGGTAAAGCTTTCTATAACAATATAGTTCACTGTCAACGCATTAAGATAGCAGGTTTTACCATTTTATTTTGTTCTTTTGGGTAATGGGACATTCTATTGTTATAAAGGAATGTGTAACATAGCAGTGGTTGGGGTGAAAATAGGTTACCATCATTAAGTATGTAAAGCTTGTTGAAGTCTGGTCCCTAAAACTAGTGAACTTGGATAAAATTTATGAGAATGATGGTAAAATTTGGTTGAAAGTCGTCTAAAGATGAGGGAAAGAAGGATAAGAACTAAAAGAAGATGCTAAAAGATTGAAATTGAGAAGAAAGTGTTTGTGATTGAATGTAAGATGATTTTGGGTTGAAAGAATTTGATAGGTACTTGGGTATTATGGGCTGCCCAGAGTTGTATGGCATGTTCGATGGAGTATTTAAGTGGCTTGGTTCTTCCCCCTTGATAGCTAGCTTTTAAGGCAGGGTTCCCGAAGTCCTTGGATGCTTATCAATTGGTACAAAGCTGGTTATCGGTGGCTCGGCGGAAAGGGCTACTTCCAAAGGGGATTGACCAGTAAGGCTGAGTAAAGCGTCATAGAGTGCCAGCCGCTGGGATGTTGGCTCTCAGGTGCGGTACTATGATAGGTAGTTGGTTGTTATGGGGTGTCCACGTGCCACATTTAGCAGTATGGGATGTTTGATGGATTATTTAAGCGACTTGGTATTTTCCCCTTGATAGCTATGTATAAGGGAGGGTTCCCCATGCTCTTGGATACTCATCAGTATTGTAGTAATCATGGGTTATAACTGATCTAATTTATCCAAATTTTGTTACTGCAGAAGACAGAAGTATATTAAATTTTATTTTTTTTGCATTGTAAATAGTAATTCCTTTTAGCTAATCATGTTTTTTTTCTCAGATCTCATGTGTCGGTGGTTTTGGCTCCAACTCTTACATGTACAAAATTAATGGAACTGCTAATATCAATGCAATTAGAGCAGCTTCAGAGCAAGGTAAAAGAGGAATTTGCACATTTCTTATGTGCTATCTACTTTTTCGGTTCCTACCCTCCTTATGTTGTGGGGCAGTACATGTTTGTTTTTTTGGGGCATTACATGTACTCATCTATCATTCAAGCTTACAACAGCAACAGCCAGGACTTTCCCTGCTAGATGGGATAAGCTACATGGATCTGATTAGTGATTATGCTATTAGGCTTAAAAAACAAATTTATTAGGCTTAAAAAACAAATTTGAAAAAAAAGTTGTACAATTAGTAATACCTGACCTTAGTGAATTAATATCCCCAAACATATAGTAGTTAACTGTTTAATCCACTTTGTTGCAGTCAAATAACAGATTTGTACTGTACAGGTATTTACGATAAAAAAATGTGCTTACTGAAAATTCTTTACTTAAAAATTATAAAAGAGCACAATAATGGTTGCCAAATCACAAATAGAAGGGCCATTTTTTTTTTGGGGGGTTTTATTGGACAACAGTCAGACTGGCGATGTTGTATGGTACGAAGTGTTGGGCGGTTAAGAACCAACATGAGAATCAAGTAAGTGTAGCGGAGATGAGGATGTTGCGTTGGATGAGTGGTAAAACTAGACGGGGTAGGATTACAAATGACACCATTAGAGTGTTGGGGTAGCACCTATAGTAGAAAAGATGGTAGAAAAACTATCGGAGAAACTGTTAGAAAAGATTTAAAGGTCAATGAGTTGGATCCAAATATGGTTTATGATAGAACGTTATGGCGTAAGTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGATTGTTGTTGGAATCGCTCCTTACCCATGTCGCTATTTAAGTGTGAGCGCTAGCAGCAGCAACAATCTCAAAGTTTGTTTTACCCCATATAGGTTTCTATCCGCCTTTCTCCAGATACATGTACAAGGTAGGAATAACCATAGAAATACAAATATGGCATATGTTATTTGGATAATTTTTAGAAAGAAAAGAAAAATAAAAGAACTCAGTGCTGTGTCCCTGAACTAAGACAACCATATGTCCTACCAGTAATGATTGACACATGACAATGAAACTATTAGAGGTTCCAATTATAAGAAATAAACTATCAGTTACGTAAAAATACTCCAATTATAAGAAATAAACTATCAGTTACGTAAAAATACTGAAGGAAGAGTAAGAAGAGTAATGAGGAAAGGAGGGAGGTACTGTCAGTGTGGGGAGAGGGAGAAAATTTCTTAGTTGGCTGCCACAATTATCTGCCTTGTTACATAAAAGAATTTCTGTAGCAATGCAGATTTCAGCGCATTAGTTTTTGCTTCCTCTTCTAGAGTACTATGCTACTGATTGTTGGATGATTTGCTTTTGGTCGTACAGGGGTTAAAAGATTCATCTATATCTCTGCTGCTGATTTTGGTGTAGTAAATTACTTGCTGCAGGGGTATTATGAAGGAAAGGTAATGTGTCCAACTCTTCATTGTAGCGATATTTAATTGCCATTTGCCGATGAATTTTATAGTAAAACTATATGCAAACGCAAAATGCTGAAATTTTTCTATTTGTAATCCTTGCCTCTGAATCTGAGGTATTAAATATGTTGTAGGCTTTTGTTGATTCATGAAAAGAAAAAGCCAGGAAATTTTTGTTGTAAAACTTTTTGCGAATTGCTGGAATTTTCCTATTGAGGTTTCTGGCCTTGGAATCTTAAGTATTAAAAATGTTGTAAGGTTTTGTCGATTCTTTAAAAAAAGTAATGTTTGTTTGAGTATTATTTTGTCTTACTTATATAAGTCATGCCTCCACATGAGGAGAGTACTTCCATGCTGTATAACTCATGCCTCCAGTTAATAGCTAGAAGTAGGAGAAACTGTAATACCTTCACATAAACTTCCATGTTTAACAACCTCCAGTCCAACCACTTGGTATGTGTGGTCCTCGTTCTGGATCCACTCTAACATAACTCTAATGTTCACCGTGCTCTTTCTGATAATCTCTCCTGCAACACCCTTTCCTTTCTTATTGATTTAACATGTAATGATATGGTCATTTTTATAAATGGAATGGGTTTCTAACATTCAGAGCTAGGCCCAAGTCATTTTATCTAACAGGTCATTTGATGAGAAATATACCTATTTCTGTGGTTAACTCATTTTCTTTTTGTTGCTGTTTACCATTATACTTAACTTCTTTAGTCATTAGTTTATTATATTCTTAATTTTCCTTTGGGATGTAACGTTTGCCATGTACAGATGCTTCTATTTCTACAAAAATAAAATTCAAGTACAAGCGATGTTTAGATATTTTCATTTTAATCTCAAGAATTAAATATTGTGCTTTAATTGATGTAGAGAGCTGCTGAAACTGAGCTTCTGACCAAATTTCCTTACGGAGGTAATTATTCATCTTCTACTTTACTTTAACCACTGGATTTCAGAAATTGGTTTAAATTTTATCTTTTGGCCATGTGCTAACTATCATGTTTGATAACAGTTAATACTGTTCGTTGTTACCAATTTTTCTCCCTGTGAGCTTTTGCAATGTTTCATTGTACAAGAAAGTTTTTTTTTTTTTTTTTCTTCTTTTTCATCTAACTGAAATCCAATTACTGATAGTTCATGGTGTGGGGTATTATGTTCGAAAATGATTGGACTTTTACATACCTTTTTCAGGAATAATTCTGAGGCCAGGGTTTATTTATGGGACTCGAAGTGTTGGGAGTATGAAGATACCTCTTGGCATAGTTGGATCTCCGTTAGAGATGGTAATTTCATCTGCTTCTTTAGTATGACATATACATCTATTTTTCAGTCCATATGTGCAAATAATTTTGTTGTTATGCCACTTCACCAAGCCAATTTGAGGGATGAAATGCAAGGTTTTCCCTGTTTTGCATTCCTCATTATCAGTTTTGGTTTATACAGGGGTTCGCCCCTTCAATTATGGTTGTCTGAACGGTTCACCAGTCAATTGATTGGTTTTTGGGTGTAAGAATCCTGAAATTGAGTTGCATTCCTCCTTCCCCTGATCAAAGTTCTGACTATTTTGTAGTATATGTATGTTTGCATTGATATATGCCTAGCATAGCAGCAGGTTTTAACTAAATGAGGACTAATGATTAAATTGCTTTACTTGTCTTGAATACCAGCTTAAGAAATGTGTTGTTTCCTTTGTTTTTTACTGCAATTCACTTGTGTGATGTAGGTTCTCCAACATACTACAGCGTTGACCCAGATCCCACTTGTTGGGCCTCTATTGACACCTCCTGTCAATGTTACTGCTGTGGCTAAAGTTGCTGTTAGAGCTGCTACCGATCCTGTTTTCCCTCCTGGAATCATAGATGTCCATGGAATACAACGTTACAGTCAGAATAAATCAAAGTAG

Protein sequence

>MS.gene32722.t1

MKTIISRLIHSSPSSISRLNAMAVSINGRGFCTDSNKIDEPFKVEEAETVPPPPTEKLLVLGGNGFVGSHVCREALNHGLSVASLSRSGKSSLHDSWATNVIWYKGNLLSTESLKEALNGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEQGVKRFIYISAADFGVVNYLLQGYYEGKRAAETELLTKFPYGGIILRPGFIYGTRSVGSMKIPLGIVGSPLEMVLQHTTALTQIPLVGPLLTPPVNVTAVAKVAVRAATDPVFPPGIIDVHGIQRYSQNKSK