Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32817.t1 | XP_003603151.2 | 97.6 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 2.20E-118 | 434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32817.t1 | G7J7N1 | 97.6 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 1.6e-118 | 434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32817 | MS.gene00645 | PPI |
| MS.gene047175 | MS.gene32817 | PPI |
| MS.gene002071 | MS.gene32817 | PPI |
| MS.gene072034 | MS.gene32817 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32817.t1 | MTR_3g104420 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 7.96e-155 | 429 |
| MS.gene32817.t1 | MTR_1g016080 | 66.990 | 206 | 65 | 2 | 7 | 211 | 16 | 219 | 4.86e-84 | 251 |
| MS.gene32817.t1 | MTR_2g006770 | 40.102 | 197 | 118 | 0 | 15 | 211 | 2 | 198 | 2.34e-54 | 175 |
| MS.gene32817.t1 | MTR_8g089715 | 41.579 | 190 | 108 | 1 | 22 | 211 | 12 | 198 | 1.65e-51 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32817.t1 | AT5G11870 | 51.659 | 211 | 99 | 2 | 2 | 211 | 1 | 209 | 8.65e-77 | 232 |
| MS.gene32817.t1 | AT5G11870 | 51.659 | 211 | 99 | 2 | 2 | 211 | 1 | 209 | 1.36e-76 | 231 |
| MS.gene32817.t1 | AT1G71190 | 40.201 | 199 | 116 | 2 | 14 | 211 | 3 | 199 | 4.04e-47 | 156 |
| MS.gene32817.t1 | AT1G71190 | 31.818 | 198 | 93 | 2 | 14 | 211 | 3 | 158 | 6.22e-32 | 116 |
Find 50 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCCTGAGTGGGTATATT+TGG | 0.270365 | 3.1:-82333921 | None:intergenic |
| GCTGATGTGCGCAATCTTCT+TGG | 0.292001 | 3.1:+82331853 | MS.gene32817:CDS |
| TTGAGAGAACGAGGGATTGT+AGG | 0.339421 | 3.1:-82331817 | None:intergenic |
| GGAATGATAGGGGTGGCTTT+TGG | 0.350023 | 3.1:+82332194 | MS.gene32817:CDS |
| GTATTCTACTGTGGAATGAT+AGG | 0.350144 | 3.1:+82332182 | MS.gene32817:CDS |
| CACAAGACACGATGGTTATC+AGG | 0.353948 | 3.1:-82332239 | None:intergenic |
| TGTCTTGTGGGACACTTTAC+CGG | 0.354703 | 3.1:+82332253 | MS.gene32817:CDS |
| GTCATCACATTCAATGTGTT+TGG | 0.356718 | 3.1:-82331967 | None:intergenic |
| GATTCTTCCTCTAGCTATTC+CGG | 0.356834 | 3.1:+82333877 | MS.gene32817:CDS |
| TCAAGGAGAGGTGTGGGGTT+GGG | 0.368834 | 3.1:+82332157 | MS.gene32817:CDS |
| ATGGAAGTTTCTTCAACATA+AGG | 0.375146 | 3.1:+82332040 | MS.gene32817:CDS |
| GATTGCGCACATCAGCAAAT+TGG | 0.406273 | 3.1:-82331846 | None:intergenic |
| GGAAGAGAAATCATCGCATA+TGG | 0.416828 | 3.1:+82331746 | MS.gene32817:CDS |
| AATATACCCACTCAGGATAC+TGG | 0.429088 | 3.1:+82333924 | MS.gene32817:CDS |
| GCAGAATTTATAATGATATC+CGG | 0.438014 | 3.1:+82333834 | MS.gene32817:intron |
| TAGCTAGAGGAAGAATCAAC+TGG | 0.467082 | 3.1:-82333871 | None:intergenic |
| TAACGAATCACCGGTTCAAA+AGG | 0.470277 | 3.1:+82331722 | MS.gene32817:CDS |
| TAGTTCTCAAGGAGAGGTGT+GGG | 0.474447 | 3.1:+82332151 | MS.gene32817:intron |
| CTCAAGGAGAGGTGTGGGGT+TGG | 0.475836 | 3.1:+82332156 | MS.gene32817:CDS |
| GAGAGATTCGGCCAGAGGAC+TGG | 0.478783 | 3.1:+82333639 | MS.gene32817:CDS |
| ACTGGAACATCATGCAGAAC+CGG | 0.489043 | 3.1:-82333853 | None:intergenic |
| TATTCTACTGTGGAATGATA+GGG | 0.499634 | 3.1:+82332183 | MS.gene32817:CDS |
| TGCAATTGTTGTAGTTCTCA+AGG | 0.500033 | 3.1:+82332140 | MS.gene32817:intron |
| TTCATGAAGTACACAAAGAA+TGG | 0.508918 | 3.1:-82333694 | None:intergenic |
| TTCTTTGTGTACTTCATGAA+CGG | 0.513090 | 3.1:+82333697 | MS.gene32817:CDS |
| TGATAACCATCGTGTCTTGT+GGG | 0.516662 | 3.1:+82332241 | MS.gene32817:CDS |
| GAAGAGAAATCATCGCATAT+GGG | 0.528727 | 3.1:+82331747 | MS.gene32817:CDS |
| GATGGTTATCAGGCTTCAAA+TGG | 0.529905 | 3.1:-82332229 | None:intergenic |
| CTGATAACCATCGTGTCTTG+TGG | 0.534054 | 3.1:+82332240 | MS.gene32817:CDS |
| TCCTCTCATTAAGATGATGG+TGG | 0.537417 | 3.1:+82333584 | MS.gene32817:intron |
| ATCAGGCTTCAAATGGTAGT+AGG | 0.539749 | 3.1:-82332222 | None:intergenic |
| ACAAGACATAAGCGAGGAGA+AGG | 0.540303 | 3.1:-82333607 | None:intergenic |
| TACAACACAAACCAGTCCTC+TGG | 0.545806 | 3.1:-82333650 | None:intergenic |
| TGGTGTTGATTGAGAGAACG+AGG | 0.565813 | 3.1:-82331826 | None:intergenic |
| CGAATCACCGGTTCAAAAGG+TGG | 0.570656 | 3.1:+82331725 | MS.gene32817:CDS |
| CGCTCCAAATATACCCACTC+AGG | 0.581005 | 3.1:+82333917 | MS.gene32817:CDS |
| GTAGTTCTCAAGGAGAGGTG+TGG | 0.581928 | 3.1:+82332150 | MS.gene32817:intron |
| GGTGTTGATTGAGAGAACGA+GGG | 0.590095 | 3.1:-82331825 | None:intergenic |
| TGGATTATGTAACGAATCAC+CGG | 0.595706 | 3.1:+82331713 | MS.gene32817:CDS |
| CGGTACATAAATGCTACTGC+CGG | 0.597991 | 3.1:-82333896 | None:intergenic |
| TTGTTGTAGTTCTCAAGGAG+AGG | 0.623249 | 3.1:+82332145 | MS.gene32817:intron |
| AGTTCTCAAGGAGAGGTGTG+GGG | 0.625536 | 3.1:+82332152 | MS.gene32817:intron |
| ATTCTACTGTGGAATGATAG+GGG | 0.634282 | 3.1:+82332184 | MS.gene32817:CDS |
| CTGAGTGGGTATATTTGGAG+CGG | 0.666995 | 3.1:-82333916 | None:intergenic |
| GGTTGGGTAGTATTCTACTG+TGG | 0.667404 | 3.1:+82332173 | MS.gene32817:CDS |
| GCTACTGCCGGAATAGCTAG+AGG | 0.672029 | 3.1:-82333884 | None:intergenic |
| AAGAGAAATCATCGCATATG+GGG | 0.679380 | 3.1:+82331748 | MS.gene32817:CDS |
| AATCAAACAAGACATAAGCG+AGG | 0.704764 | 3.1:-82333613 | None:intergenic |
| CTACTGTGGAATGATAGGGG+TGG | 0.705878 | 3.1:+82332187 | MS.gene32817:CDS |
| AAGTGTCCCACAAGACACGA+TGG | 0.707318 | 3.1:-82332247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTAAAATGATTTATGAT+TGG | + | chr3.1:82332657-82332676 | MS.gene32817:intron | 15.0% |
| !! | AATTACAACTAGTTAATAAT+AGG | - | chr3.1:82332077-82332096 | None:intergenic | 15.0% |
| !! | ACAAAACATAAGTATAATCT+CGG | - | chr3.1:82331904-82331923 | None:intergenic | 20.0% |
| !!! | ACAATTTTCTTTCAACAAAT+TGG | - | chr3.1:82333044-82333063 | None:intergenic | 20.0% |
| ! | AATAAGTTTGAATTCACGTT+TGG | - | chr3.1:82332574-82332593 | None:intergenic | 25.0% |
| ! | AATGACTTGATGTACAAAAT+AGG | - | chr3.1:82333767-82333786 | None:intergenic | 25.0% |
| ! | ACACATACTATTATGAAACA+TGG | + | chr3.1:82333343-82333362 | MS.gene32817:intron | 25.0% |
| ! | AGAAATGATTTAGACATGTT+TGG | - | chr3.1:82332812-82332831 | None:intergenic | 25.0% |
| ! | CATTAGACAGTAAAAATTTG+TGG | - | chr3.1:82332105-82332124 | None:intergenic | 25.0% |
| ! | GCAGAATTTATAATGATATC+CGG | + | chr3.1:82333834-82333853 | MS.gene32817:intron | 25.0% |
| ! | GTTTGATATTGTTGTAGTTT+GGG | + | chr3.1:82332943-82332962 | MS.gene32817:intron | 25.0% |
| ! | TGAAAACAAACATAAGTAGA+GGG | + | chr3.1:82332866-82332885 | MS.gene32817:intron | 25.0% |
| !! | CTTCAAATTAGAATTGATTC+CGG | + | chr3.1:82332758-82332777 | MS.gene32817:intron | 25.0% |
| !! | TTGATTTTACTTAAAGCGAT+TGG | + | chr3.1:82332345-82332364 | MS.gene32817:intron | 25.0% |
| !!! | AAATTTCCCATTTTTAGTTG+TGG | + | chr3.1:82331990-82332009 | MS.gene32817:CDS | 25.0% |
| !!! | AATTTCCCATTTTTAGTTGT+GGG | + | chr3.1:82331991-82332010 | MS.gene32817:CDS | 25.0% |
| !!! | CTTATGTTTGTTTTCACTTT+TGG | - | chr3.1:82332862-82332881 | None:intergenic | 25.0% |
| !!! | CTTTAGGTTTGAATCAATTT+TGG | + | chr3.1:82332470-82332489 | MS.gene32817:intron | 25.0% |
| !!! | TCTAAATCGTATACTTTTTG+TGG | + | chr3.1:82333125-82333144 | MS.gene32817:intron | 25.0% |
| !!! | TGTTTGATTTTTGAGAGATT+CGG | + | chr3.1:82333627-82333646 | MS.gene32817:CDS | 25.0% |
| AAAACACCCACAACTAAAAA+TGG | - | chr3.1:82332000-82332019 | None:intergenic | 30.0% | |
| AAACACCCACAACTAAAAAT+GGG | - | chr3.1:82331999-82332018 | None:intergenic | 30.0% | |
| AGGCTAAAAATCATTTGTAG+AGG | + | chr3.1:82332716-82332735 | MS.gene32817:intron | 30.0% | |
| AGTAAAATTAAACTTACCGC+CGG | - | chr3.1:82332780-82332799 | None:intergenic | 30.0% | |
| AGTTGTAACTTAACACTAAC+CGG | - | chr3.1:82332275-82332294 | None:intergenic | 30.0% | |
| ATGGAAGTTTCTTCAACATA+AGG | + | chr3.1:82332040-82332059 | MS.gene32817:CDS | 30.0% | |
| CACAATTTGAATTGCTTGTT+TGG | + | chr3.1:82332921-82332940 | MS.gene32817:intron | 30.0% | |
| CATAATAGTATGTGTGTACA+CGG | - | chr3.1:82333338-82333357 | None:intergenic | 30.0% | |
| GAAAACAAACATAAGTAGAG+GGG | + | chr3.1:82332867-82332886 | MS.gene32817:intron | 30.0% | |
| GAATCTATAAGTGTTCCATT+TGG | + | chr3.1:82333067-82333086 | MS.gene32817:intron | 30.0% | |
| GGTTTGATATTGTTGTAGTT+TGG | + | chr3.1:82332942-82332961 | MS.gene32817:intron | 30.0% | |
| GTATAGAAATAAGAAGTAGG+TGG | - | chr3.1:82331882-82331901 | None:intergenic | 30.0% | |
| GTATTAAAGATAGCAGTAAC+TGG | - | chr3.1:82333500-82333519 | None:intergenic | 30.0% | |
| GTGAAAACAAACATAAGTAG+AGG | + | chr3.1:82332865-82332884 | MS.gene32817:intron | 30.0% | |
| TATTCTACTGTGGAATGATA+GGG | + | chr3.1:82332183-82332202 | MS.gene32817:CDS | 30.0% | |
| TCGGTATAGAAATAAGAAGT+AGG | - | chr3.1:82331885-82331904 | None:intergenic | 30.0% | |
| TGGATACATTTGCATAAAGT+GGG | + | chr3.1:82332677-82332696 | MS.gene32817:intron | 30.0% | |
| TGTTAAAACCAAAATCACGA+TGG | - | chr3.1:82331937-82331956 | None:intergenic | 30.0% | |
| TTAATGCATTGTTCCTTATG+TGG | + | chr3.1:82332299-82332318 | MS.gene32817:intron | 30.0% | |
| TTCATGAAGTACACAAAGAA+TGG | - | chr3.1:82333697-82333716 | None:intergenic | 30.0% | |
| TTCTTTGTGTACTTCATGAA+CGG | + | chr3.1:82333697-82333716 | MS.gene32817:CDS | 30.0% | |
| TTGGATACATTTGCATAAAG+TGG | + | chr3.1:82332676-82332695 | MS.gene32817:intron | 30.0% | |
| TTTCAACAAATTGGATTTGC+AGG | - | chr3.1:82333035-82333054 | None:intergenic | 30.0% | |
| ! | GTAGTCAAAATTGATTCTAG+AGG | - | chr3.1:82332838-82332857 | None:intergenic | 30.0% |
| ! | TAGGTTTGAATCAATTTTGG+AGG | + | chr3.1:82332473-82332492 | MS.gene32817:intron | 30.0% |
| ! | TTTTCCTCTCATTAAGATGA+TGG | + | chr3.1:82333581-82333600 | MS.gene32817:intron | 30.0% |
| !!! | TGATTTTGGTTTTAACACAC+AGG | + | chr3.1:82331940-82331959 | MS.gene32817:intron | 30.0% |
| !!! | TTTTTAGTTGTGGGTGTTTT+AGG | + | chr3.1:82332000-82332019 | MS.gene32817:CDS | 30.0% |
| AAGAGAAATCATCGCATATG+GGG | + | chr3.1:82331748-82331767 | MS.gene32817:CDS | 35.0% | |
| AAGCGACAAATCATAGCTTT+AGG | + | chr3.1:82332454-82332473 | MS.gene32817:intron | 35.0% | |
| AATCAAACAAGACATAAGCG+AGG | - | chr3.1:82333616-82333635 | None:intergenic | 35.0% | |
| AATTCTGTATGCTAGTTGGT+TGG | + | chr3.1:82333809-82333828 | MS.gene32817:intron | 35.0% | |
| AGATGTAATCTCCTCATGAA+AGG | - | chr3.1:82333449-82333468 | None:intergenic | 35.0% | |
| AGGAGATTACATCTATGTAC+AGG | + | chr3.1:82333455-82333474 | MS.gene32817:intron | 35.0% | |
| ATTATGAAACATGGCATCCA+TGG | + | chr3.1:82333352-82333371 | MS.gene32817:intron | 35.0% | |
| ATTCTACTGTGGAATGATAG+GGG | + | chr3.1:82332184-82332203 | MS.gene32817:CDS | 35.0% | |
| ATTTCTCTCAACTTCTTCCA+TGG | - | chr3.1:82333372-82333391 | None:intergenic | 35.0% | |
| GAAGAGAAATCATCGCATAT+GGG | + | chr3.1:82331747-82331766 | MS.gene32817:CDS | 35.0% | |
| GCTAAATTCTGTATGCTAGT+TGG | + | chr3.1:82333805-82333824 | MS.gene32817:intron | 35.0% | |
| GTACATCTAAGCATACTCTT+TGG | + | chr3.1:82333520-82333539 | MS.gene32817:intron | 35.0% | |
| GTATTCTACTGTGGAATGAT+AGG | + | chr3.1:82332182-82332201 | MS.gene32817:CDS | 35.0% | |
| GTCATCACATTCAATGTGTT+TGG | - | chr3.1:82331970-82331989 | None:intergenic | 35.0% | |
| TACACTTCCAGAATCAATTC+TGG | + | chr3.1:82332543-82332562 | MS.gene32817:intron | 35.0% | |
| TAGAAAACTCTTTGCATTGC+TGG | + | chr3.1:82333393-82333412 | MS.gene32817:intron | 35.0% | |
| TGCAATTGTTGTAGTTCTCA+AGG | + | chr3.1:82332140-82332159 | MS.gene32817:intron | 35.0% | |
| TGGATTATGTAACGAATCAC+CGG | + | chr3.1:82331713-82331732 | MS.gene32817:CDS | 35.0% | |
| TTTATCCAACTTGAACCGAT+GGG | + | chr3.1:82333264-82333283 | MS.gene32817:intron | 35.0% | |
| ! | CAAATTAGAATTGATTCCGG+CGG | + | chr3.1:82332761-82332780 | MS.gene32817:intron | 35.0% |
| ! | TGGGTTGAACAATAACTTTG+AGG | + | chr3.1:82332696-82332715 | MS.gene32817:intron | 35.0% |
| ! | TTTTATCCAACTTGAACCGA+TGG | + | chr3.1:82333263-82333282 | MS.gene32817:intron | 35.0% |
| !! | TTTTGATTAGCTCGGATAAC+AGG | + | chr3.1:82333287-82333306 | MS.gene32817:intron | 35.0% |
| AACATAAGTAGAGGGGTTCA+CGG | + | chr3.1:82332874-82332893 | MS.gene32817:intron | 40.0% | |
| AATATACCCACTCAGGATAC+TGG | + | chr3.1:82333924-82333943 | MS.gene32817:CDS | 40.0% | |
| ACAAAAACCAGTATCCTGAG+TGG | - | chr3.1:82333934-82333953 | None:intergenic | 40.0% | |
| ATCAGGCTTCAAATGGTAGT+AGG | - | chr3.1:82332225-82332244 | None:intergenic | 40.0% | |
| CAAAAACCAGTATCCTGAGT+GGG | - | chr3.1:82333933-82333952 | None:intergenic | 40.0% | |
| GACGAAGTTAACCTTTCATG+AGG | + | chr3.1:82333435-82333454 | MS.gene32817:intron | 40.0% | |
| GATGGTTATCAGGCTTCAAA+TGG | - | chr3.1:82332232-82332251 | None:intergenic | 40.0% | |
| GATTCTTCCTCTAGCTATTC+CGG | + | chr3.1:82333877-82333896 | MS.gene32817:CDS | 40.0% | |
| GCTGAACCAACTGAATGTTT+GGG | + | chr3.1:82333221-82333240 | MS.gene32817:intron | 40.0% | |
| GGAAGAGAAATCATCGCATA+TGG | + | chr3.1:82331746-82331765 | MS.gene32817:CDS | 40.0% | |
| GTATCCTGAGTGGGTATATT+TGG | - | chr3.1:82333924-82333943 | None:intergenic | 40.0% | |
| GTCAAACCCAAACATTCAGT+TGG | - | chr3.1:82333230-82333249 | None:intergenic | 40.0% | |
| TAGCAGTAACTGGTACTTAG+TGG | - | chr3.1:82333490-82333509 | None:intergenic | 40.0% | |
| TAGCTAGAGGAAGAATCAAC+TGG | - | chr3.1:82333874-82333893 | None:intergenic | 40.0% | |
| TCAATTTCTGTCGCCACATA+AGG | - | chr3.1:82332315-82332334 | None:intergenic | 40.0% | |
| TCACAAACCTAAGACCTGAA+CGG | + | chr3.1:82333193-82333212 | MS.gene32817:intron | 40.0% | |
| TGATAACCATCGTGTCTTGT+GGG | + | chr3.1:82332241-82332260 | MS.gene32817:CDS | 40.0% | |
| TTCCAACACTGTGAACCAAA+TGG | - | chr3.1:82333085-82333104 | None:intergenic | 40.0% | |
| TTGTTGTAGTTCTCAAGGAG+AGG | + | chr3.1:82332145-82332164 | MS.gene32817:intron | 40.0% | |
| ! | TCATTGCTCCATCGTGATTT+TGG | + | chr3.1:82331926-82331945 | MS.gene32817:intron | 40.0% |
| ! | TCCTCTCATTAAGATGATGG+TGG | + | chr3.1:82333584-82333603 | MS.gene32817:intron | 40.0% |
| ! | TTCCATTTGGTTCACAGTGT+TGG | + | chr3.1:82333080-82333099 | MS.gene32817:intron | 40.0% |
| ! | TTCTCTTCCACCTTTTGAAC+CGG | - | chr3.1:82331735-82331754 | None:intergenic | 40.0% |
| !! | AGACTTGAAGTGGTTTGGTT+GGG | + | chr3.1:82332987-82333006 | MS.gene32817:intron | 40.0% |
| !! | TAACGAATCACCGGTTCAAA+AGG | + | chr3.1:82331722-82331741 | MS.gene32817:CDS | 40.0% |
| !!! | GGATACTGGTTTTTGTCTAC+AGG | + | chr3.1:82333938-82333957 | MS.gene32817:CDS | 40.0% |
| !!! | GGCTTTGTTTTTGCTCTAGA+TGG | + | chr3.1:82332021-82332040 | MS.gene32817:CDS | 40.0% |
| AACTGGTACTTAGTGGTGAC+TGG | - | chr3.1:82333483-82333502 | None:intergenic | 45.0% | |
| ACAAGACATAAGCGAGGAGA+AGG | - | chr3.1:82333610-82333629 | None:intergenic | 45.0% | |
| ACATAAGTAGAGGGGTTCAC+GGG | + | chr3.1:82332875-82332894 | MS.gene32817:intron | 45.0% | |
| ACTGGAACATCATGCAGAAC+CGG | - | chr3.1:82333856-82333875 | None:intergenic | 45.0% | |
| AGTATGTGTGTACACGGATC+AGG | - | chr3.1:82333332-82333351 | None:intergenic | 45.0% | |
| CAAACCACTTCAAGTCTGGT+TGG | - | chr3.1:82332984-82333003 | None:intergenic | 45.0% | |
| CAACCAAACCACTTCAAGTC+TGG | - | chr3.1:82332988-82333007 | None:intergenic | 45.0% | |
| CAACCAGACTTGAAGTGGTT+TGG | + | chr3.1:82332982-82333001 | MS.gene32817:intron | 45.0% | |
| CACAAGACACGATGGTTATC+AGG | - | chr3.1:82332242-82332261 | None:intergenic | 45.0% | |
| CCGAGCTAATCAAAACCCAT+CGG | - | chr3.1:82333282-82333301 | None:intergenic | 45.0% | |
| CGGTACATAAATGCTACTGC+CGG | - | chr3.1:82333899-82333918 | None:intergenic | 45.0% | |
| CTGAGTGGGTATATTTGGAG+CGG | - | chr3.1:82333919-82333938 | None:intergenic | 45.0% | |
| CTGATAACCATCGTGTCTTG+TGG | + | chr3.1:82332240-82332259 | MS.gene32817:CDS | 45.0% | |
| GATTGCGCACATCAGCAAAT+TGG | - | chr3.1:82331849-82331868 | None:intergenic | 45.0% | |
| GCCACCATCATCTTAATGAG+AGG | - | chr3.1:82333588-82333607 | None:intergenic | 45.0% | |
| GGCTGAACCAACTGAATGTT+TGG | + | chr3.1:82333220-82333239 | MS.gene32817:intron | 45.0% | |
| GGTTGGGTAGTATTCTACTG+TGG | + | chr3.1:82332173-82332192 | MS.gene32817:CDS | 45.0% | |
| TACAACACAAACCAGTCCTC+TGG | - | chr3.1:82333653-82333672 | None:intergenic | 45.0% | |
| TGTCTTGTGGGACACTTTAC+CGG | + | chr3.1:82332253-82332272 | MS.gene32817:CDS | 45.0% | |
| TTGAGAGAACGAGGGATTGT+AGG | - | chr3.1:82331820-82331839 | None:intergenic | 45.0% | |
| ! | GGAGCATCCAGAATTGATTC+TGG | - | chr3.1:82332553-82332572 | None:intergenic | 45.0% |
| ! | TAGTTCTCAAGGAGAGGTGT+GGG | + | chr3.1:82332151-82332170 | MS.gene32817:intron | 45.0% |
| !! | CAAAACCCATCGGTTCAAGT+TGG | - | chr3.1:82333272-82333291 | None:intergenic | 45.0% |
| !! | CAGACTTGAAGTGGTTTGGT+TGG | + | chr3.1:82332986-82333005 | MS.gene32817:intron | 45.0% |
| !! | GGTGTTGATTGAGAGAACGA+GGG | - | chr3.1:82331828-82331847 | None:intergenic | 45.0% |
| !! | TGGTGTTGATTGAGAGAACG+AGG | - | chr3.1:82331829-82331848 | None:intergenic | 45.0% |
| !! | TTTTTGAGAGATTCGGCCAG+AGG | + | chr3.1:82333634-82333653 | MS.gene32817:CDS | 45.0% |
| !!! | CCGATGGGTTTTGATTAGCT+CGG | + | chr3.1:82333279-82333298 | MS.gene32817:intron | 45.0% |
| AAGTGTCCCACAAGACACGA+TGG | - | chr3.1:82332250-82332269 | None:intergenic | 50.0% | |
| ACCTAAGACCTGAACGGTTC+AGG | + | chr3.1:82333199-82333218 | MS.gene32817:intron | 50.0% | |
| CCAACCAACCAGACTTGAAG+TGG | + | chr3.1:82332977-82332996 | MS.gene32817:intron | 50.0% | |
| CCACTTCAAGTCTGGTTGGT+TGG | - | chr3.1:82332980-82332999 | None:intergenic | 50.0% | |
| CGCTCCAAATATACCCACTC+AGG | + | chr3.1:82333917-82333936 | MS.gene32817:CDS | 50.0% | |
| CTACTGTGGAATGATAGGGG+TGG | + | chr3.1:82332187-82332206 | MS.gene32817:CDS | 50.0% | |
| GCTGATGTGCGCAATCTTCT+TGG | + | chr3.1:82331853-82331872 | MS.gene32817:CDS | 50.0% | |
| GTAGTTCTCAAGGAGAGGTG+TGG | + | chr3.1:82332150-82332169 | MS.gene32817:intron | 50.0% | |
| ! | AGTTCTCAAGGAGAGGTGTG+GGG | + | chr3.1:82332152-82332171 | MS.gene32817:intron | 50.0% |
| ! | GGAATGATAGGGGTGGCTTT+TGG | + | chr3.1:82332194-82332213 | MS.gene32817:CDS | 50.0% |
| !! | CGAATCACCGGTTCAAAAGG+TGG | + | chr3.1:82331725-82331744 | MS.gene32817:CDS | 50.0% |
| GCCTGAACCGTTCAGGTCTT+AGG | - | chr3.1:82333203-82333222 | None:intergenic | 55.0% | |
| GCTACTGCCGGAATAGCTAG+AGG | - | chr3.1:82333887-82333906 | None:intergenic | 55.0% | |
| TGGTTCAGCCTGAACCGTTC+AGG | - | chr3.1:82333210-82333229 | None:intergenic | 55.0% | |
| ! | TCAAGGAGAGGTGTGGGGTT+GGG | + | chr3.1:82332157-82332176 | MS.gene32817:CDS | 55.0% |
| GAGAGATTCGGCCAGAGGAC+TGG | + | chr3.1:82333639-82333658 | MS.gene32817:CDS | 60.0% | |
| GTAGAGGGGTTCACGGGTAC+TGG | + | chr3.1:82332881-82332900 | MS.gene32817:intron | 60.0% | |
| ! | CTCAAGGAGAGGTGTGGGGT+TGG | + | chr3.1:82332156-82332175 | MS.gene32817:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 82331709 | 82333967 | 82331709 | ID=MS.gene32817 |
| chr3.1 | mRNA | 82331709 | 82333967 | 82331709 | ID=MS.gene32817.t1;Parent=MS.gene32817 |
| chr3.1 | exon | 82331709 | 82331874 | 82331709 | ID=MS.gene32817.t1.exon1;Parent=MS.gene32817.t1 |
| chr3.1 | CDS | 82331709 | 82331874 | 82331709 | ID=cds.MS.gene32817.t1;Parent=MS.gene32817.t1 |
| chr3.1 | exon | 82331962 | 82332061 | 82331962 | ID=MS.gene32817.t1.exon2;Parent=MS.gene32817.t1 |
| chr3.1 | CDS | 82331962 | 82332061 | 82331962 | ID=cds.MS.gene32817.t1;Parent=MS.gene32817.t1 |
| chr3.1 | exon | 82332154 | 82332274 | 82332154 | ID=MS.gene32817.t1.exon3;Parent=MS.gene32817.t1 |
| chr3.1 | CDS | 82332154 | 82332274 | 82332154 | ID=cds.MS.gene32817.t1;Parent=MS.gene32817.t1 |
| chr3.1 | exon | 82333597 | 82333718 | 82333597 | ID=MS.gene32817.t1.exon4;Parent=MS.gene32817.t1 |
| chr3.1 | CDS | 82333597 | 82333718 | 82333597 | ID=cds.MS.gene32817.t1;Parent=MS.gene32817.t1 |
| chr3.1 | exon | 82333838 | 82333967 | 82333838 | ID=MS.gene32817.t1.exon5;Parent=MS.gene32817.t1 |
| chr3.1 | CDS | 82333838 | 82333967 | 82333838 | ID=cds.MS.gene32817.t1;Parent=MS.gene32817.t1 |
| Gene Sequence |
| Protein sequence |
