Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32849.t1 | XP_013461824.1 | 94.6 | 221 | 12 | 0 | 2 | 222 | 3 | 223 | 3.80E-97 | 364.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32849.t1 | A3DF24 | 47.1 | 68 | 29 | 3 | 157 | 222 | 7 | 69 | 4.5e-06 | 53.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32849.t1 | A0A072V1K6 | 94.6 | 221 | 12 | 0 | 2 | 222 | 3 | 223 | 2.7e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055701 | MS.gene32849 | 0.81033 | 1.22E-50 | -1.69E-46 |
| MS.gene059710 | MS.gene32849 | 0.803398 | 3.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32849.t1 | MTR_3g103530 | 98.190 | 221 | 4 | 0 | 2 | 222 | 3 | 223 | 9.59e-165 | 453 |
| MS.gene32849.t1 | MTR_3g103520 | 62.500 | 224 | 59 | 6 | 1 | 222 | 1 | 201 | 5.84e-90 | 263 |
| MS.gene32849.t1 | MTR_1g017260 | 54.978 | 231 | 72 | 4 | 1 | 219 | 1 | 211 | 5.74e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32849.t1 | AT4G07990 | 56.769 | 229 | 83 | 3 | 1 | 216 | 1 | 226 | 8.74e-85 | 251 |
| MS.gene32849.t1 | AT4G07990 | 55.022 | 229 | 73 | 4 | 1 | 216 | 1 | 212 | 1.11e-77 | 233 |
| MS.gene32849.t1 | AT4G07990 | 51.887 | 212 | 72 | 4 | 1 | 199 | 1 | 195 | 3.73e-66 | 202 |
Find 48 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATACCAATCTTCTCTT+TGG | 0.237379 | 3.1:+81947323 | None:intergenic |
| TCTTGAATGGTTCTCTATTC+AGG | 0.252085 | 3.1:-81949153 | MS.gene32849:intron |
| ATCACATCACTACTCAGTTT+TGG | 0.258477 | 3.1:-81947227 | MS.gene32849:CDS |
| TTAATCTCTGCATCTGAATA+TGG | 0.285526 | 3.1:+81946756 | None:intergenic |
| GTTCTTTGTAGGAACGAATA+AGG | 0.287969 | 3.1:-81947441 | MS.gene32849:intron |
| GAGAATAGCTCCGGCAAGTC+TGG | 0.288440 | 3.1:+81949313 | None:intergenic |
| TACCTCTGCAGTCAGCATTT+AGG | 0.316408 | 3.1:-81945953 | MS.gene32849:intron |
| CTCTTATAGAACAGCTTATC+AGG | 0.320170 | 3.1:-81948890 | MS.gene32849:CDS |
| ATATTCAGATGCAGAGATTA+AGG | 0.324710 | 3.1:-81946754 | MS.gene32849:intron |
| GACAAAGACCCCAGACTTGC+CGG | 0.380368 | 3.1:-81949323 | MS.gene32849:CDS |
| GCATAATTTCCGCTATCTCT+TGG | 0.390757 | 3.1:+81947253 | None:intergenic |
| TTCATTTGAGGCCATAAAAC+AGG | 0.394665 | 3.1:-81945760 | MS.gene32849:CDS |
| TTATTATCCTGGTTCTGATC+AGG | 0.398268 | 3.1:+81945909 | None:intergenic |
| GATCAGAACCAGGATAATAA+AGG | 0.410195 | 3.1:-81945906 | MS.gene32849:intron |
| TCCAAAGAGAAGATTGGTAT+TGG | 0.426685 | 3.1:-81947324 | MS.gene32849:CDS |
| AACATTTCCAAAGAGAAGAT+TGG | 0.429169 | 3.1:-81947330 | MS.gene32849:CDS |
| AAGACCTACCTTTATTATCC+TGG | 0.443524 | 3.1:+81945898 | None:intergenic |
| GCGAATGCAAGAGGAGTATG+AGG | 0.461989 | 3.1:-81948842 | MS.gene32849:CDS |
| AGAGGAGTATGAGGAAGAGA+TGG | 0.464838 | 3.1:-81948833 | MS.gene32849:CDS |
| AGAATAGCTCCGGCAAGTCT+GGG | 0.474072 | 3.1:+81949314 | None:intergenic |
| CTTGCCGGAGCTATTCTCTT+CGG | 0.479421 | 3.1:-81949308 | MS.gene32849:CDS |
| AGAAGTGATGACTTCATTTG+AGG | 0.490829 | 3.1:-81945772 | MS.gene32849:CDS |
| CTGATAATTCATACAGAGAC+AGG | 0.495611 | 3.1:-81947297 | MS.gene32849:CDS |
| GAAAGGAATAAGTTCAAAAG+AGG | 0.496321 | 3.1:-81947394 | MS.gene32849:CDS |
| AAAACGTGTTTAACAGAGAA+AGG | 0.497612 | 3.1:-81947411 | MS.gene32849:CDS |
| AAAGGAATAAGTTCAAAAGA+GGG | 0.505014 | 3.1:-81947393 | MS.gene32849:CDS |
| CAGCTTATCAGGAAGAGGCC+TGG | 0.511698 | 3.1:-81948879 | MS.gene32849:CDS |
| TCAAAAGAGGGTATGAAAGC+TGG | 0.522510 | 3.1:-81947381 | MS.gene32849:CDS |
| TAGAACAGCTTATCAGGAAG+AGG | 0.526062 | 3.1:-81948884 | MS.gene32849:CDS |
| AAATGTTGATGATATGTGTT+GGG | 0.531118 | 3.1:+81947346 | None:intergenic |
| GAAATGTTGATGATATGTGT+TGG | 0.572850 | 3.1:+81947345 | None:intergenic |
| AGCATTTAGGACAAAGGCAA+AGG | 0.578684 | 3.1:-81945940 | MS.gene32849:CDS |
| TATGAAAGCTGGAGGGAACA+TGG | 0.581040 | 3.1:-81947370 | MS.gene32849:CDS |
| GAGGAGAGTAGTGGTGGTGG+CGG | 0.582545 | 3.1:+81949277 | None:intergenic |
| TAGACCGAAGAGAATAGCTC+CGG | 0.588131 | 3.1:+81949304 | None:intergenic |
| ACACAATAAGCGAATGCAAG+AGG | 0.588847 | 3.1:-81948851 | MS.gene32849:CDS |
| AGGTAACGAGGACTCAGGCA+TGG | 0.605478 | 3.1:-81948930 | MS.gene32849:CDS |
| ACGAGGACTCAGGCATGGAA+AGG | 0.609901 | 3.1:-81948925 | MS.gene32849:CDS |
| CGAGAAACTCCAAGAGATAG+CGG | 0.616837 | 3.1:-81947262 | MS.gene32849:CDS |
| GCAGTCAGCATTTAGGACAA+AGG | 0.632969 | 3.1:-81945946 | MS.gene32849:intron |
| GAATAGCTCCGGCAAGTCTG+GGG | 0.633807 | 3.1:+81949315 | None:intergenic |
| AAAGAGGGTATGAAAGCTGG+AGG | 0.638715 | 3.1:-81947378 | MS.gene32849:CDS |
| GTATCATCCTGATCAGAACC+AGG | 0.639339 | 3.1:-81945916 | MS.gene32849:CDS |
| TACGAGGAGAGTAGTGGTGG+TGG | 0.647715 | 3.1:+81949274 | None:intergenic |
| ACGTACGAGGAGAGTAGTGG+TGG | 0.657358 | 3.1:+81949271 | None:intergenic |
| CAGGCATGGAAAGGAAAGAG+TGG | 0.659819 | 3.1:-81948916 | MS.gene32849:CDS |
| GTTACGTACGAGGAGAGTAG+TGG | 0.668201 | 3.1:+81949268 | None:intergenic |
| AAGAGGGTATGAAAGCTGGA+GGG | 0.711956 | 3.1:-81947377 | MS.gene32849:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAACAGAAAT+CGG | + | chr3.1:81946036-81946055 | None:intergenic | 10.0% |
| !! | TATAATATGTACATAAATTA+TGG | + | chr3.1:81948647-81948666 | None:intergenic | 10.0% |
| !! | AATAATAATAATAATCCGAA+GGG | + | chr3.1:81948955-81948974 | None:intergenic | 15.0% |
| !! | ATTATAGAAAAGAAAACAAA+TGG | - | chr3.1:81947999-81948018 | MS.gene32849:intron | 15.0% |
| !! | TAATAATAATAATAATCCGA+AGG | + | chr3.1:81948956-81948975 | None:intergenic | 15.0% |
| !! | TTATAGAAAAGAAAACAAAT+GGG | - | chr3.1:81948000-81948019 | MS.gene32849:intron | 15.0% |
| !!! | AAAATTGAGAAAATTTTCAA+TGG | - | chr3.1:81947298-81947317 | MS.gene32849:CDS | 15.0% |
| !!! | TACAGTTTTAAGAAAATTTT+TGG | + | chr3.1:81948177-81948196 | None:intergenic | 15.0% |
| !! | AAATTTGTAACCAAAAAAAG+AGG | + | chr3.1:81945987-81946006 | None:intergenic | 20.0% |
| !! | ATTAATCGATAAAGCTAAAA+AGG | + | chr3.1:81945859-81945878 | None:intergenic | 20.0% |
| !! | CATCAGAAAGTTAAATTTAA+TGG | + | chr3.1:81948284-81948303 | None:intergenic | 20.0% |
| !! | TAAATGGTTAAGATTGAAAA+TGG | - | chr3.1:81947272-81947291 | MS.gene32849:CDS | 20.0% |
| !! | TTTAGAGATAATGATAGAAA+TGG | + | chr3.1:81947464-81947483 | None:intergenic | 20.0% |
| !!! | AAGTGATTGCTTTATTTAAA+TGG | - | chr3.1:81947256-81947275 | MS.gene32849:CDS | 20.0% |
| !!! | ATTTTTCTTTTGTTCTTTGT+AGG | - | chr3.1:81947629-81947648 | MS.gene32849:intron | 20.0% |
| !!! | CAAATCTTGCATTTAAAATT+CGG | + | chr3.1:81946340-81946359 | None:intergenic | 20.0% |
| !!! | CATAGTGTTTAAAATTAGAT+AGG | + | chr3.1:81948074-81948093 | None:intergenic | 20.0% |
| !!! | CTAATAACTTGTATGATATT+AGG | + | chr3.1:81947500-81947519 | None:intergenic | 20.0% |
| !!! | GTTTGAACTCTTTTAATTTT+AGG | - | chr3.1:81946131-81946150 | MS.gene32849:intron | 20.0% |
| !!! | TTATAGATTATTGTGTCATT+TGG | + | chr3.1:81947579-81947598 | None:intergenic | 20.0% |
| !!! | TTCTATCATTATCTCTAAAA+TGG | - | chr3.1:81947465-81947484 | MS.gene32849:intron | 20.0% |
| !!! | TTTTAGATACTGATATGAAT+TGG | - | chr3.1:81946971-81946990 | MS.gene32849:intron | 20.0% |
| ! | AAAGGAATAAGTTCAAAAGA+GGG | - | chr3.1:81947688-81947707 | MS.gene32849:intron | 25.0% |
| ! | AATCTATGATGTAGTATTAG+AGG | + | chr3.1:81948516-81948535 | None:intergenic | 25.0% |
| ! | ACAAAACCAAAACAAAAACA+AGG | + | chr3.1:81949092-81949111 | None:intergenic | 25.0% |
| ! | ATATGTACATAAATTATGGC+AGG | + | chr3.1:81948643-81948662 | None:intergenic | 25.0% |
| ! | ATCTTCTTTCTCATATTTGA+TGG | + | chr3.1:81947217-81947236 | None:intergenic | 25.0% |
| ! | ATTAATCACATAATCGTGTA+TGG | - | chr3.1:81949253-81949272 | MS.gene32849:intron | 25.0% |
| ! | ATTCACTTACCTAAAAGATA+AGG | - | chr3.1:81948745-81948764 | MS.gene32849:intron | 25.0% |
| ! | TAGTAAATTAGTAATGTGCA+AGG | + | chr3.1:81948374-81948393 | None:intergenic | 25.0% |
| ! | TGCTATATGATACAACATTA+TGG | - | chr3.1:81946655-81946674 | MS.gene32849:intron | 25.0% |
| ! | TTAATCACATAATCGTGTAT+GGG | - | chr3.1:81949254-81949273 | MS.gene32849:intron | 25.0% |
| ! | TTATAGCATGAATGAATGAA+TGG | - | chr3.1:81946070-81946089 | MS.gene32849:intron | 25.0% |
| !! | AAAATGGAGAGAATTTTCAA+TGG | + | chr3.1:81947176-81947195 | None:intergenic | 25.0% |
| !! | CTTATGTTTCCTTATCTTTT+AGG | + | chr3.1:81948757-81948776 | None:intergenic | 25.0% |
| !! | CTTCATTTCAATTTTCAGTT+CGG | - | chr3.1:81945890-81945909 | MS.gene32849:intron | 25.0% |
| !!! | AAATGTTGATGATATGTGTT+GGG | + | chr3.1:81947738-81947757 | None:intergenic | 25.0% |
| !!! | TCTTTTAATTTTAGGTAACG+AGG | - | chr3.1:81946139-81946158 | MS.gene32849:intron | 25.0% |
| !!! | TTTAATTCCTCCTCTTTTTT+TGG | - | chr3.1:81945974-81945993 | MS.gene32849:intron | 25.0% |
| AAAACGTGTTTAACAGAGAA+AGG | - | chr3.1:81947670-81947689 | MS.gene32849:intron | 30.0% | |
| AACATTTCCAAAGAGAAGAT+TGG | - | chr3.1:81947751-81947770 | MS.gene32849:intron | 30.0% | |
| AATGAATGGATACATACATG+AGG | - | chr3.1:81946084-81946103 | MS.gene32849:intron | 30.0% | |
| ACATATGTGATTCTGATACT+TGG | - | chr3.1:81948102-81948121 | MS.gene32849:intron | 30.0% | |
| ATAACATTAGATAGAGAGTC+AGG | - | chr3.1:81946433-81946452 | MS.gene32849:intron | 30.0% | |
| ATATTCAGATGCAGAGATTA+AGG | - | chr3.1:81948327-81948346 | MS.gene32849:intron | 30.0% | |
| CTAAAAACTGCATTTCTTTC+TGG | + | chr3.1:81946822-81946841 | None:intergenic | 30.0% | |
| GAAAGGAATAAGTTCAAAAG+AGG | - | chr3.1:81947687-81947706 | MS.gene32849:intron | 30.0% | |
| GAGATTCCATTTGAGAAAAA+TGG | + | chr3.1:81947192-81947211 | None:intergenic | 30.0% | |
| GCACATTACTAATTTACTAC+TGG | - | chr3.1:81948375-81948394 | MS.gene32849:intron | 30.0% | |
| TAACATTAGATAGAGAGTCA+GGG | - | chr3.1:81946434-81946453 | MS.gene32849:intron | 30.0% | |
| TAATCACATAATCGTGTATG+GGG | - | chr3.1:81949255-81949274 | MS.gene32849:intron | 30.0% | |
| TCAGATCTTTATCAACCAAA+TGG | + | chr3.1:81948698-81948717 | None:intergenic | 30.0% | |
| TCTACAAAGTTGTAATCCAA+GGG | + | chr3.1:81947026-81947045 | None:intergenic | 30.0% | |
| TTAACTTTCTGATGAACTTC+AGG | - | chr3.1:81948290-81948309 | MS.gene32849:intron | 30.0% | |
| TTAATCTCTGCATCTGAATA+TGG | + | chr3.1:81948328-81948347 | None:intergenic | 30.0% | |
| TTTCTTAATCGTTTCTCATG+TGG | + | chr3.1:81946604-81946623 | None:intergenic | 30.0% | |
| TTTGTAACCAAAAAAAGAGG+AGG | + | chr3.1:81945984-81946003 | None:intergenic | 30.0% | |
| ! | AAACCTTAAGTGCTCTTTTA+GGG | - | chr3.1:81946925-81946944 | MS.gene32849:intron | 30.0% |
| ! | AGAACATTTATCTGCCTTTT+TGG | + | chr3.1:81948791-81948810 | None:intergenic | 30.0% |
| ! | AGCAATTGATGGACAAAATA+TGG | + | chr3.1:81948408-81948427 | None:intergenic | 30.0% |
| ! | CACTATCTTTTCTACAATAG+GGG | + | chr3.1:81946463-81946482 | None:intergenic | 30.0% |
| ! | CCACTATCTTTTCTACAATA+GGG | + | chr3.1:81946464-81946483 | None:intergenic | 30.0% |
| ! | GTTACTTCTTTCCTGTTTTA+TGG | + | chr3.1:81949335-81949354 | None:intergenic | 30.0% |
| ! | TAAACCTTAAGTGCTCTTTT+AGG | - | chr3.1:81946924-81946943 | MS.gene32849:intron | 30.0% |
| ! | TCCACTATCTTTTCTACAAT+AGG | + | chr3.1:81946465-81946484 | None:intergenic | 30.0% |
| ! | TTGCATTTAAAATTCGGAGT+TGG | + | chr3.1:81946334-81946353 | None:intergenic | 30.0% |
| ! | TTTTTCACATATATCACCTG+AGG | - | chr3.1:81947944-81947963 | MS.gene32849:intron | 30.0% |
| !! | GAAATGTTGATGATATGTGT+TGG | + | chr3.1:81947739-81947758 | None:intergenic | 30.0% |
| !! | GCACTTAAGGTTTATTTTTC+TGG | + | chr3.1:81946918-81946937 | None:intergenic | 30.0% |
| !! | TTCTCTCCATTTTTCTCAAA+TGG | - | chr3.1:81947183-81947202 | MS.gene32849:intron | 30.0% |
| !!! | ACATGACCTTGTTTTTGTTT+TGG | - | chr3.1:81949083-81949102 | MS.gene32849:intron | 30.0% |
| AAAAATGTGTGATGCACTGA+TGG | + | chr3.1:81948435-81948454 | None:intergenic | 35.0% | |
| AAAACAAATGGGAACTGTGT+TGG | - | chr3.1:81948011-81948030 | MS.gene32849:intron | 35.0% | |
| AAGACCTACCTTTATTATCC+TGG | + | chr3.1:81949186-81949205 | None:intergenic | 35.0% | |
| AATGGAGAGATTCCAAATTC+GGG | + | chr3.1:81947158-81947177 | None:intergenic | 35.0% | |
| ACAAACAACAAGGGTTAAGA+GGG | + | chr3.1:81947086-81947105 | None:intergenic | 35.0% | |
| ACCTAGTGATGCAAAATAGA+AGG | + | chr3.1:81947608-81947627 | None:intergenic | 35.0% | |
| ACTAATCAAAGACCCGAATT+TGG | - | chr3.1:81947143-81947162 | MS.gene32849:intron | 35.0% | |
| AGAAATTGAGAAAGATCCCT+TGG | - | chr3.1:81947007-81947026 | MS.gene32849:intron | 35.0% | |
| AGAACCAGGATAATAAAGGT+AGG | - | chr3.1:81949179-81949198 | MS.gene32849:intron | 35.0% | |
| AGAAGTGATGACTTCATTTG+AGG | - | chr3.1:81949309-81949328 | MS.gene32849:CDS | 35.0% | |
| AGGTACGAAAAACTCTTGAA+TGG | - | chr3.1:81945915-81945934 | MS.gene32849:CDS | 35.0% | |
| AGTTAATCTTGTACTTCCTC+AGG | + | chr3.1:81947963-81947982 | None:intergenic | 35.0% | |
| ATAGTTAGAAAAGTGGGTCA+TGG | + | chr3.1:81947114-81947133 | None:intergenic | 35.0% | |
| ATGGTGTTCACAAACAACAA+GGG | + | chr3.1:81947095-81947114 | None:intergenic | 35.0% | |
| ATGGTTTCAACTTGCAAGAT+CGG | - | chr3.1:81948127-81948146 | MS.gene32849:intron | 35.0% | |
| CAATGGAGAGATTCCAAATT+CGG | + | chr3.1:81947159-81947178 | None:intergenic | 35.0% | |
| CCCTATTGTAGAAAAGATAG+TGG | - | chr3.1:81946461-81946480 | MS.gene32849:intron | 35.0% | |
| CCTAGTGATGCAAAATAGAA+GGG | + | chr3.1:81947607-81947626 | None:intergenic | 35.0% | |
| CTCTTATAGAACAGCTTATC+AGG | - | chr3.1:81946191-81946210 | MS.gene32849:intron | 35.0% | |
| CTGATAATTCATACAGAGAC+AGG | - | chr3.1:81947784-81947803 | MS.gene32849:intron | 35.0% | |
| CTGGGAATAGTTAGAAAAGT+GGG | + | chr3.1:81947120-81947139 | None:intergenic | 35.0% | |
| GATACATACATGAGGAATCT+AGG | - | chr3.1:81946092-81946111 | MS.gene32849:intron | 35.0% | |
| GATCAGAACCAGGATAATAA+AGG | - | chr3.1:81949175-81949194 | MS.gene32849:CDS | 35.0% | |
| GATCTTGTGATCTCAAACTT+TGG | - | chr3.1:81949226-81949245 | MS.gene32849:intron | 35.0% | |
| GTCTACAAAGTTGTAATCCA+AGG | + | chr3.1:81947027-81947046 | None:intergenic | 35.0% | |
| GTGATTCTGATACTTGGTAA+TGG | - | chr3.1:81948108-81948127 | MS.gene32849:intron | 35.0% | |
| GTTCTTTGTAGGAACGAATA+AGG | - | chr3.1:81947640-81947659 | MS.gene32849:intron | 35.0% | |
| GTTGTGTAGTAAGACTAGAT+GGG | - | chr3.1:81946395-81946414 | MS.gene32849:intron | 35.0% | |
| TAGAACAGTAACTTGGAGAT+AGG | - | chr3.1:81946859-81946878 | MS.gene32849:intron | 35.0% | |
| TCCAAAGAGAAGATTGGTAT+TGG | - | chr3.1:81947757-81947776 | MS.gene32849:intron | 35.0% | |
| TCCAATACCAATCTTCTCTT+TGG | + | chr3.1:81947761-81947780 | None:intergenic | 35.0% | |
| TCTTGAATGGTTCTCTATTC+AGG | - | chr3.1:81945928-81945947 | MS.gene32849:CDS | 35.0% | |
| TTTAGGTAAGTGAATTGACC+AGG | + | chr3.1:81948740-81948759 | None:intergenic | 35.0% | |
| ! | AGCAGAAGACTTCTCTAAAA+GGG | - | chr3.1:81948877-81948896 | MS.gene32849:CDS | 35.0% |
| ! | ATCACATCACTACTCAGTTT+TGG | - | chr3.1:81947854-81947873 | MS.gene32849:intron | 35.0% |
| ! | GGTGATTTAGAACAGTAACT+TGG | - | chr3.1:81946852-81946871 | MS.gene32849:intron | 35.0% |
| ! | TCACATCACTACTCAGTTTT+GGG | - | chr3.1:81947855-81947874 | MS.gene32849:intron | 35.0% |
| ! | TTCATTTGAGGCCATAAAAC+AGG | - | chr3.1:81949321-81949340 | MS.gene32849:CDS | 35.0% |
| ! | TTCTGATGAACTTCAGGTTT+AGG | - | chr3.1:81948296-81948315 | MS.gene32849:intron | 35.0% |
| ! | TTTCAATTTTCAGTTCGGTC+AGG | - | chr3.1:81945895-81945914 | MS.gene32849:intron | 35.0% |
| !! | TATTTTTCTGGTCAGACAAG+AGG | + | chr3.1:81946906-81946925 | None:intergenic | 35.0% |
| !! | TTATTATCCTGGTTCTGATC+AGG | + | chr3.1:81949175-81949194 | None:intergenic | 35.0% |
| !!! | GCTTGTTTTGCTTTCATGAT+TGG | - | chr3.1:81948258-81948277 | MS.gene32849:intron | 35.0% |
| AACAATTAGTGTGAAGGAGG+AGG | + | chr3.1:81947356-81947375 | None:intergenic | 40.0% | |
| ACACAATAAGCGAATGCAAG+AGG | - | chr3.1:81946230-81946249 | MS.gene32849:intron | 40.0% | |
| ACACTACTGGACATCAAATC+AGG | + | chr3.1:81948927-81948946 | None:intergenic | 40.0% | |
| ACCAACAATTAGTGTGAAGG+AGG | + | chr3.1:81947359-81947378 | None:intergenic | 40.0% | |
| ACCAAGCTTATCCTACAAAG+TGG | + | chr3.1:81946706-81946725 | None:intergenic | 40.0% | |
| AGACCTAAACTGACCGAAAA+AGG | - | chr3.1:81948853-81948872 | MS.gene32849:CDS | 40.0% | |
| AGATAGGTAATTGACAGCTC+TGG | + | chr3.1:81948058-81948077 | None:intergenic | 40.0% | |
| AGTCCTGAGAGTCAATCATA+TGG | - | chr3.1:81946536-81946555 | MS.gene32849:intron | 40.0% | |
| ATCAGGATAGAAGTCACTAG+AGG | + | chr3.1:81948910-81948929 | None:intergenic | 40.0% | |
| CACAAACAACAAGGGTTAAG+AGG | + | chr3.1:81947087-81947106 | None:intergenic | 40.0% | |
| CACAAGGAGAGCAGTATAAA+TGG | + | chr3.1:81947404-81947423 | None:intergenic | 40.0% | |
| CAGCAGAAGACTTCTCTAAA+AGG | - | chr3.1:81948876-81948895 | MS.gene32849:CDS | 40.0% | |
| CATGGTGTTCACAAACAACA+AGG | + | chr3.1:81947096-81947115 | None:intergenic | 40.0% | |
| CCAAGCTTATCCTACAAAGT+GGG | + | chr3.1:81946705-81946724 | None:intergenic | 40.0% | |
| CCTTGTGTAATCTGCAAACA+AGG | - | chr3.1:81947417-81947436 | MS.gene32849:CDS | 40.0% | |
| CTACATGCACAAACCACATA+AGG | + | chr3.1:81946494-81946513 | None:intergenic | 40.0% | |
| CTGAGAGTCAATCATATGGA+GGG | - | chr3.1:81946540-81946559 | MS.gene32849:intron | 40.0% | |
| CTTATCCTACAAAGTGGGAT+CGG | + | chr3.1:81946700-81946719 | None:intergenic | 40.0% | |
| CTTGTTAGTGTTTCATGTCC+TGG | - | chr3.1:81948719-81948738 | MS.gene32849:intron | 40.0% | |
| GCAAGATCGGTATTTGTGAA+TGG | - | chr3.1:81948140-81948159 | MS.gene32849:intron | 40.0% | |
| GCATAATTTCCGCTATCTCT+TGG | + | chr3.1:81947831-81947850 | None:intergenic | 40.0% | |
| GCTGGGAATAGTTAGAAAAG+TGG | + | chr3.1:81947121-81947140 | None:intergenic | 40.0% | |
| GGAATGAATCGAAGAGAAGA+AGG | + | chr3.1:81945838-81945857 | None:intergenic | 40.0% | |
| GGTTGTGTAGTAAGACTAGA+TGG | - | chr3.1:81946394-81946413 | MS.gene32849:intron | 40.0% | |
| GTAGCTAGCTGTAATGTTGT+GGG | - | chr3.1:81946741-81946760 | MS.gene32849:intron | 40.0% | |
| GTGTAATCTGCAAACAAGGT+TGG | - | chr3.1:81947421-81947440 | MS.gene32849:CDS | 40.0% | |
| TAGAACAGCTTATCAGGAAG+AGG | - | chr3.1:81946197-81946216 | MS.gene32849:intron | 40.0% | |
| TAGTGGAAACTTGCCTTATG+TGG | - | chr3.1:81946478-81946497 | MS.gene32849:intron | 40.0% | |
| TCCTCCTTCACACTAATTGT+TGG | - | chr3.1:81947355-81947374 | MS.gene32849:CDS | 40.0% | |
| TGCACCAACAATTAGTGTGA+AGG | + | chr3.1:81947362-81947381 | None:intergenic | 40.0% | |
| TGTAGCTAGCTGTAATGTTG+TGG | - | chr3.1:81946740-81946759 | MS.gene32849:intron | 40.0% | |
| TGTGCATTTGAGCACTATTC+TGG | - | chr3.1:81948535-81948554 | MS.gene32849:intron | 40.0% | |
| TGTTTCCTCCACAGATTAGA+TGG | + | chr3.1:81947917-81947936 | None:intergenic | 40.0% | |
| TTGCCTTGAGCACAATTCAT+AGG | + | chr3.1:81948611-81948630 | None:intergenic | 40.0% | |
| TTGGAGATAGGACTCCTTTA+GGG | - | chr3.1:81946871-81946890 | MS.gene32849:intron | 40.0% | |
| ! | AAGTCTTCTGCTGCCTTTTT+CGG | + | chr3.1:81948869-81948888 | None:intergenic | 40.0% |
| ! | AGCATTTAGGACAAAGGCAA+AGG | - | chr3.1:81949141-81949160 | MS.gene32849:intron | 40.0% |
| ! | CCCTTCTATTTTGCATCACT+AGG | - | chr3.1:81947604-81947623 | MS.gene32849:intron | 40.0% |
| ! | CCTTGTTTGCAGATTACACA+AGG | + | chr3.1:81947420-81947439 | None:intergenic | 40.0% |
| ! | GGGTCTTTGATTAGTTAGCT+GGG | + | chr3.1:81947138-81947157 | None:intergenic | 40.0% |
| ! | TCAAAAGAGGGTATGAAAGC+TGG | - | chr3.1:81947700-81947719 | MS.gene32849:intron | 40.0% |
| ! | TCGCTTATTGTGTTTTCTCC+AGG | + | chr3.1:81946223-81946242 | None:intergenic | 40.0% |
| ! | TTTGTTGTGTAGCAGAGATG+AGG | - | chr3.1:81946361-81946380 | MS.gene32849:intron | 40.0% |
| ! | TTTTCGGTCAGTTTAGGTCT+AGG | + | chr3.1:81948853-81948872 | None:intergenic | 40.0% |
| !! | AAGCCGAAAAAGTGCCAAAA+AGG | - | chr3.1:81948774-81948793 | MS.gene32849:intron | 40.0% |
| !! | ATTTTAGGTAACGAGGACTC+AGG | - | chr3.1:81946146-81946165 | MS.gene32849:intron | 40.0% |
| !! | CTGCCTTTTTGGCACTTTTT+CGG | + | chr3.1:81948780-81948799 | None:intergenic | 40.0% |
| !!! | GCAGTTTTTAGCTTGAGCTT+AGG | - | chr3.1:81946831-81946850 | MS.gene32849:intron | 40.0% |
| AACTTAGCTTCAGCAACGTC+TGG | + | chr3.1:81949286-81949305 | None:intergenic | 45.0% | |
| ACAAAGTGGGATCGGATACA+AGG | + | chr3.1:81946692-81946711 | None:intergenic | 45.0% | |
| ACAAGGGTTAAGAGGGAGAA+CGG | + | chr3.1:81947079-81947098 | None:intergenic | 45.0% | |
| ACTGTCCATCTAATCTGTGG+AGG | - | chr3.1:81947909-81947928 | MS.gene32849:intron | 45.0% | |
| AGAGAAGAAGGTTACGTACG+AGG | + | chr3.1:81945826-81945845 | None:intergenic | 45.0% | |
| ATAAATGGTTGACACAGCGC+AGG | + | chr3.1:81947389-81947408 | None:intergenic | 45.0% | |
| CAGAGATGAGGATATTGCGT+TGG | - | chr3.1:81946373-81946392 | MS.gene32849:intron | 45.0% | |
| CAGCCTATGAATTGTGCTCA+AGG | - | chr3.1:81948605-81948624 | MS.gene32849:intron | 45.0% | |
| CCCACTTTGTAGGATAAGCT+TGG | - | chr3.1:81946702-81946721 | MS.gene32849:intron | 45.0% | |
| CCTGAGAGTCAATCATATGG+AGG | - | chr3.1:81946539-81946558 | MS.gene32849:intron | 45.0% | |
| CGAGAAACTCCAAGAGATAG+CGG | - | chr3.1:81947819-81947838 | MS.gene32849:intron | 45.0% | |
| CTAGCTGTAATGTTGTGGGA+AGG | - | chr3.1:81946745-81946764 | MS.gene32849:intron | 45.0% | |
| CTTGAGCACAATTCATAGGC+TGG | + | chr3.1:81948607-81948626 | None:intergenic | 45.0% | |
| CTTGGAGATAGGACTCCTTT+AGG | - | chr3.1:81946870-81946889 | MS.gene32849:intron | 45.0% | |
| GAGGGTAGTCAAATCACTTG+AGG | - | chr3.1:81946558-81946577 | MS.gene32849:intron | 45.0% | |
| GCAACTGTCCATCTAATCTG+TGG | - | chr3.1:81947906-81947925 | MS.gene32849:intron | 45.0% | |
| GTATCATCCTGATCAGAACC+AGG | - | chr3.1:81949165-81949184 | MS.gene32849:CDS | 45.0% | |
| TACCTCTGCAGTCAGCATTT+AGG | - | chr3.1:81949128-81949147 | MS.gene32849:intron | 45.0% | |
| TAGACCGAAGAGAATAGCTC+CGG | + | chr3.1:81945780-81945799 | None:intergenic | 45.0% | |
| TATGAAAGCTGGAGGGAACA+TGG | - | chr3.1:81947711-81947730 | MS.gene32849:intron | 45.0% | |
| TGACATGGGTCATTGGGATT+TGG | + | chr3.1:81947331-81947350 | None:intergenic | 45.0% | |
| TGTATCCGATCCCACTTTGT+AGG | - | chr3.1:81946692-81946711 | MS.gene32849:intron | 45.0% | |
| ! | AAAGAGGGTATGAAAGCTGG+AGG | - | chr3.1:81947703-81947722 | MS.gene32849:intron | 45.0% |
| ! | AAGAGGGTATGAAAGCTGGA+GGG | - | chr3.1:81947704-81947723 | MS.gene32849:intron | 45.0% |
| ! | AGAGGAGTATGAGGAAGAGA+TGG | - | chr3.1:81946248-81946267 | MS.gene32849:intron | 45.0% |
| ! | CCTCCATATGATTGACTCTC+AGG | + | chr3.1:81946542-81946561 | None:intergenic | 45.0% |
| ! | CGGGTCTTTGATTAGTTAGC+TGG | + | chr3.1:81947139-81947158 | None:intergenic | 45.0% |
| ! | CTGATGGACGTAGCAATTGA+TGG | + | chr3.1:81948419-81948438 | None:intergenic | 45.0% |
| ! | GCAGTCAGCATTTAGGACAA+AGG | - | chr3.1:81949135-81949154 | MS.gene32849:intron | 45.0% |
| !! | AGAGGAGTACTCTTCCCTAA+AGG | + | chr3.1:81946888-81946907 | None:intergenic | 45.0% |
| !! | CTGCCCTAAAAGAGCACTTA+AGG | + | chr3.1:81946931-81946950 | None:intergenic | 45.0% |
| !!! | ACTCAGTTTTGGGTCTTGAC+AGG | - | chr3.1:81947865-81947884 | MS.gene32849:intron | 45.0% |
| !!! | CTGCCTTTTTCGGTCAGTTT+AGG | + | chr3.1:81948859-81948878 | None:intergenic | 45.0% |
| AGAATAGCTCCGGCAAGTCT+GGG | + | chr3.1:81945770-81945789 | None:intergenic | 50.0% | |
| CAGGCATGGAAAGGAAAGAG+TGG | - | chr3.1:81946165-81946184 | MS.gene32849:intron | 50.0% | |
| CAGGTACTCGCTGAGATCTA+AGG | - | chr3.1:81947884-81947903 | MS.gene32849:intron | 50.0% | |
| CCAGTAGTGTGTTCTCCCTT+CGG | - | chr3.1:81948937-81948956 | MS.gene32849:intron | 50.0% | |
| CCTGAGTAAGAGCTTGGTCT+GGG | + | chr3.1:81948829-81948848 | None:intergenic | 50.0% | |
| CTAGAGTGCAGCGTTCCATT+TGG | - | chr3.1:81948680-81948699 | MS.gene32849:intron | 50.0% | |
| CTAGGTCCTGAGTAAGAGCT+TGG | + | chr3.1:81948835-81948854 | None:intergenic | 50.0% | |
| CTTGCCGGAGCTATTCTCTT+CGG | - | chr3.1:81945773-81945792 | MS.gene32849:CDS | 50.0% | |
| GAGGTGTGACATGGGTCATT+GGG | + | chr3.1:81947337-81947356 | None:intergenic | 50.0% | |
| GTTACGTACGAGGAGAGTAG+TGG | + | chr3.1:81945816-81945835 | None:intergenic | 50.0% | |
| TAAGAGCTTGGTCTGGGTCT+GGG | + | chr3.1:81948823-81948842 | None:intergenic | 50.0% | |
| TCCTGAGTAAGAGCTTGGTC+TGG | + | chr3.1:81948830-81948849 | None:intergenic | 50.0% | |
| ! | ATGCTGACTGCAGAGGTAAG+AGG | + | chr3.1:81949126-81949145 | None:intergenic | 50.0% |
| ! | GCGAATGCAAGAGGAGTATG+AGG | - | chr3.1:81946239-81946258 | MS.gene32849:intron | 50.0% |
| ! | GTCCTAAATGCTGACTGCAG+AGG | + | chr3.1:81949133-81949152 | None:intergenic | 50.0% |
| ! | TCTGCAAACAAGGTTGGTCC+AGG | - | chr3.1:81947427-81947446 | MS.gene32849:CDS | 50.0% |
| ! | TGAAGGAGGAGGTGTGACAT+GGG | + | chr3.1:81947345-81947364 | None:intergenic | 50.0% |
| ACGAGGACTCAGGCATGGAA+AGG | - | chr3.1:81946156-81946175 | MS.gene32849:intron | 55.0% | |
| ACGTACGAGGAGAGTAGTGG+TGG | + | chr3.1:81945813-81945832 | None:intergenic | 55.0% | |
| AGGTAACGAGGACTCAGGCA+TGG | - | chr3.1:81946151-81946170 | MS.gene32849:intron | 55.0% | |
| CAGCTTATCAGGAAGAGGCC+TGG | - | chr3.1:81946202-81946221 | MS.gene32849:intron | 55.0% | |
| CCCAGACCAAGCTCTTACTC+AGG | - | chr3.1:81948826-81948845 | MS.gene32849:CDS | 55.0% | |
| CCGAAGGGAGAACACACTAC+TGG | + | chr3.1:81948940-81948959 | None:intergenic | 55.0% | |
| GAACGCTGCACTCTAGCAAC+GGG | + | chr3.1:81948676-81948695 | None:intergenic | 55.0% | |
| GAATAGCTCCGGCAAGTCTG+GGG | + | chr3.1:81945769-81945788 | None:intergenic | 55.0% | |
| GACAAAGACCCCAGACTTGC+CGG | - | chr3.1:81945758-81945777 | MS.gene32849:CDS | 55.0% | |
| GAGAATAGCTCCGGCAAGTC+TGG | + | chr3.1:81945771-81945790 | None:intergenic | 55.0% | |
| GGAACGCTGCACTCTAGCAA+CGG | + | chr3.1:81948677-81948696 | None:intergenic | 55.0% | |
| GTAAGAGCTTGGTCTGGGTC+TGG | + | chr3.1:81948824-81948843 | None:intergenic | 55.0% | |
| TACGAGGAGAGTAGTGGTGG+TGG | + | chr3.1:81945810-81945829 | None:intergenic | 55.0% | |
| ! | CAAACAAGGTTGGTCCAGGC+AGG | - | chr3.1:81947431-81947450 | MS.gene32849:CDS | 55.0% |
| ! | GGAGGTGTGACATGGGTCAT+TGG | + | chr3.1:81947338-81947357 | None:intergenic | 55.0% |
| ! | GTGAAGGAGGAGGTGTGACA+TGG | + | chr3.1:81947346-81947365 | None:intergenic | 55.0% |
| GAAATGGTGCACAGCCTGCC+TGG | + | chr3.1:81947448-81947467 | None:intergenic | 60.0% | |
| !! | GAGGAGAGTAGTGGTGGTGG+CGG | + | chr3.1:81945807-81945826 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81945737 | 81949366 | 81945737 | ID=MS.gene32849 |
| chr3.1 | mRNA | 81945737 | 81949366 | 81945737 | ID=MS.gene32849.t1;Parent=MS.gene32849 |
| chr3.1 | exon | 81949277 | 81949366 | 81949277 | ID=MS.gene32849.t1.exon1;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81949277 | 81949366 | 81949277 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81949154 | 81949195 | 81949154 | ID=MS.gene32849.t1.exon2;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81949154 | 81949195 | 81949154 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81948825 | 81948950 | 81948825 | ID=MS.gene32849.t1.exon3;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81948825 | 81948950 | 81948825 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81947217 | 81947452 | 81947217 | ID=MS.gene32849.t1.exon4;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81947217 | 81947452 | 81947217 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81946755 | 81946791 | 81946755 | ID=MS.gene32849.t1.exon5;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81946755 | 81946791 | 81946755 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81945907 | 81945964 | 81945907 | ID=MS.gene32849.t1.exon6;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81945907 | 81945964 | 81945907 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| chr3.1 | exon | 81945737 | 81945816 | 81945737 | ID=MS.gene32849.t1.exon7;Parent=MS.gene32849.t1 |
| chr3.1 | CDS | 81945737 | 81945816 | 81945737 | ID=cds.MS.gene32849.t1;Parent=MS.gene32849.t1 |
| Gene Sequence |
| Protein sequence |
