Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32985.t1 | XP_003589017.1 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 8.10E-159 | 569.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32985.t1 | G7IB84 | 94.8 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 5.8e-159 | 569.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene32985 | 0.815309 | 9.88E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene32985 | 0.804329 | 2.28E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene32985 | 0.828699 | 7.77E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene32985 | 0.849475 | 3.16E-60 | -1.69E-46 |
| MS.gene060587 | MS.gene32985 | 0.802345 | 5.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32985.t1 | MTR_1g016410 | 94.771 | 306 | 12 | 1 | 1 | 302 | 1 | 306 | 0.0 | 593 |
| MS.gene32985.t1 | MTR_1g016410 | 95.964 | 223 | 9 | 0 | 80 | 302 | 1 | 223 | 5.12e-160 | 445 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32985.t1 | AT5G11810 | 51.746 | 315 | 130 | 5 | 1 | 302 | 1 | 306 | 5.09e-107 | 314 |
Find 73 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCCGAATATAGGTTTA+TGG | 0.144055 | 1.1:+5783206 | MS.gene32985:intron |
| AGGTTTGTTCATCATGAATT+TGG | 0.151777 | 1.1:-5782814 | None:intergenic |
| GGGGATCAAGCTCCATATTT+TGG | 0.200742 | 1.1:-5784655 | None:intergenic |
| GCTATAATGACCAACCATTC+AGG | 0.286488 | 1.1:+5783240 | MS.gene32985:CDS |
| TTCTCCGAATATAGGTTTAT+GGG | 0.317331 | 1.1:+5783207 | MS.gene32985:intron |
| ATGTGGAAAGCTCCAAAATA+TGG | 0.341782 | 1.1:+5784643 | MS.gene32985:CDS |
| GGTTTGTTCATCATGAATTT+GGG | 0.345299 | 1.1:-5782813 | None:intergenic |
| CTTTCAAGAAGGGAAGGTTT+TGG | 0.354580 | 1.1:+5783386 | MS.gene32985:CDS |
| GAAGGAAAACAAGATCAAAT+TGG | 0.378636 | 1.1:-5783416 | None:intergenic |
| GGAACCTGAGGGATTGGAAT+TGG | 0.393143 | 1.1:-5782649 | None:intergenic |
| AACAAACCTCCATGAAATCT+TGG | 0.393667 | 1.1:-5784145 | None:intergenic |
| AACAACACTGAAGCCAAGTT+TGG | 0.396858 | 1.1:-5783280 | None:intergenic |
| AGCCGATCGCTGATTCTATA+CGG | 0.398680 | 1.1:+5782534 | MS.gene32985:CDS |
| GTTGAGATTCTCAAGTTGCT+TGG | 0.420759 | 1.1:+5783363 | MS.gene32985:CDS |
| TATAAAAGAAAATACCTATT+GGG | 0.423891 | 1.1:-5782839 | None:intergenic |
| ATGAACAAACCTTACCCAAT+AGG | 0.429754 | 1.1:+5782825 | MS.gene32985:CDS |
| TAAAAGATTTCAACCCTGAA+TGG | 0.433252 | 1.1:-5783254 | None:intergenic |
| CATGAGCTATGGCAAGGTCT+TGG | 0.441819 | 1.1:+5783575 | MS.gene32985:CDS |
| CTTCTTTGACACTGAAAACC+TGG | 0.441872 | 1.1:-5783610 | None:intergenic |
| GAGAAAGGAACCTGAGGGAT+TGG | 0.460720 | 1.1:-5782655 | None:intergenic |
| TGTTGTTCAGTTGGATGAGT+TGG | 0.461911 | 1.1:+5783296 | MS.gene32985:CDS |
| TGGCTTCAGTGTTGTTCAGT+TGG | 0.463762 | 1.1:+5783287 | MS.gene32985:CDS |
| TTCATAGCATAACTTTGTAA+AGG | 0.471242 | 1.1:-5783669 | None:intergenic |
| AAGAAAATACCTATTGGGTA+AGG | 0.489202 | 1.1:-5782834 | None:intergenic |
| AAGTTGCTTGGCTTTCAAGA+AGG | 0.492708 | 1.1:+5783375 | MS.gene32985:CDS |
| CTATAATGACCAACCATTCA+GGG | 0.494929 | 1.1:+5783241 | MS.gene32985:CDS |
| TCATGTTGGAGCTGGTGAAA+AGG | 0.495408 | 1.1:+5783437 | MS.gene32985:CDS |
| AAATGCTGATGTGGAGTTTG+TGG | 0.495412 | 1.1:+5783476 | MS.gene32985:CDS |
| AATAATGAGACAAGCGCAGC+CGG | 0.495702 | 1.1:+5783515 | MS.gene32985:CDS |
| AAGATGATGGATCGATGAAA+CGG | 0.496428 | 1.1:-5782569 | None:intergenic |
| CTCTCCAATTCCAATCCCTC+AGG | 0.499252 | 1.1:+5782645 | MS.gene32985:CDS |
| GAGCTATGGCAAGGTCTTGG+AGG | 0.504579 | 1.1:+5783578 | MS.gene32985:CDS |
| AGAGAGAAGCGAGGGACTGA+AGG | 0.513107 | 1.1:-5782602 | None:intergenic |
| AGATGATGGATCGATGAAAC+GGG | 0.514429 | 1.1:-5782568 | None:intergenic |
| TCTAACAATTCTATCATCCT+CGG | 0.516946 | 1.1:-5782765 | None:intergenic |
| TGTGGAGTTTGTGGATGCAT+TGG | 0.518144 | 1.1:+5783485 | MS.gene32985:CDS |
| TTACAAAGTTATGCTATGAA+AGG | 0.522292 | 1.1:+5783672 | MS.gene32985:CDS |
| AGTTGCTTGGCTTTCAAGAA+GGG | 0.524482 | 1.1:+5783376 | MS.gene32985:CDS |
| TTGTCTGTTGTCATGAGCTA+TGG | 0.536953 | 1.1:+5783564 | MS.gene32985:CDS |
| TGCAATTGAGCAATTAACAT+TGG | 0.540100 | 1.1:-5784080 | None:intergenic |
| ATCTCACAATACCAGCAGAT+AGG | 0.541333 | 1.1:+5784596 | MS.gene32985:CDS |
| TCTTGGAGGATGATGAGTCC+AGG | 0.545029 | 1.1:+5783592 | MS.gene32985:CDS |
| GAGTTTGTGGATGCATTGGT+TGG | 0.545828 | 1.1:+5783489 | MS.gene32985:CDS |
| TATAGAATCAGCGATCGGCT+TGG | 0.548173 | 1.1:-5782531 | None:intergenic |
| TTTCACCAGCTCCAACATGA+AGG | 0.553634 | 1.1:-5783434 | None:intergenic |
| AGATTTCAACCCTGAATGGT+TGG | 0.554007 | 1.1:-5783250 | None:intergenic |
| CAAAGTTATGCTATGAAAGG+AGG | 0.560618 | 1.1:+5783675 | MS.gene32985:CDS |
| GTCAAAGAAGGTTGACGAGA+AGG | 0.562699 | 1.1:+5783623 | MS.gene32985:CDS |
| GCTTGGCTTTCAAGAAGGGA+AGG | 0.566463 | 1.1:+5783380 | MS.gene32985:CDS |
| TCGTGCAAGAACCTATCTGC+TGG | 0.575055 | 1.1:-5784607 | None:intergenic |
| AATTACCTCACATCCTTGCG+AGG | 0.575548 | 1.1:-5783702 | None:intergenic |
| CGAGAACCAACATCAGATCC+CGG | 0.576985 | 1.1:-5783534 | None:intergenic |
| TTTCTTGTTATGCAGAATGG+TGG | 0.581399 | 1.1:+5784571 | MS.gene32985:intron |
| AGGTTTGTGTGAGAAGATGA+TGG | 0.586742 | 1.1:-5782582 | None:intergenic |
| GCGCAGCCGGGATCTGATGT+TGG | 0.589297 | 1.1:+5783528 | MS.gene32985:CDS |
| AACCTCCATGAAATCTTGGA+AGG | 0.591474 | 1.1:-5784141 | None:intergenic |
| TCGCTGATTCTATACGGCGA+TGG | 0.591978 | 1.1:+5782540 | MS.gene32985:CDS |
| GCAGGAAGAGAGAGAAGCGA+GGG | 0.592568 | 1.1:-5782610 | None:intergenic |
| GGAGAGAGTTAAGAAAGCGC+AGG | 0.593526 | 1.1:-5782628 | None:intergenic |
| ATCACAAGACACTGATATTG+TGG | 0.596048 | 1.1:+5783338 | MS.gene32985:CDS |
| CGCAGGAAGAGAGAGAAGCG+AGG | 0.597385 | 1.1:-5782611 | None:intergenic |
| GCAACATGCTGTGACTCGCA+AGG | 0.610197 | 1.1:+5784100 | MS.gene32985:CDS |
| GAAAGGAGGAGTTCCTCGCA+AGG | 0.612920 | 1.1:+5783689 | MS.gene32985:CDS |
| GAGCAATTAACATTGGCGAA+TGG | 0.619596 | 1.1:-5784073 | None:intergenic |
| CGCCGTATAGAATCAGCGAT+CGG | 0.624581 | 1.1:-5782536 | None:intergenic |
| GAGTTCCTCGCAAGGATGTG+AGG | 0.625381 | 1.1:+5783697 | MS.gene32985:CDS |
| TGTTGTCATGAGCTATGGCA+AGG | 0.631696 | 1.1:+5783569 | MS.gene32985:CDS |
| ATAATGAGACAAGCGCAGCC+GGG | 0.641773 | 1.1:+5783516 | MS.gene32985:CDS |
| TAGTGAACAAAATGCTGATG+TGG | 0.648802 | 1.1:+5783467 | MS.gene32985:CDS |
| TTCCTTCCAAGATTTCATGG+AGG | 0.669194 | 1.1:+5784139 | MS.gene32985:CDS |
| GGAGCTGGTGAAAAGGACAA+TGG | 0.733760 | 1.1:+5783444 | MS.gene32985:CDS |
| CTCGCAAGGATAATGTACAG+AGG | 0.741638 | 1.1:+5784114 | MS.gene32985:CDS |
| ACTTTGTAAAGGATACAGTG+TGG | 0.743894 | 1.1:-5783658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAGAAAATACCTAT+TGG | - | chr1.1:5782843-5782862 | None:intergenic | 15.0% |
| !! | TATAAAAGAAAATACCTATT+GGG | - | chr1.1:5782842-5782861 | None:intergenic | 15.0% |
| !!! | TTTAGTTTTAAAGATTAATG+AGG | + | chr1.1:5784463-5784482 | MS.gene32985:intron | 15.0% |
| !! | AATTGATTAAGAAAGAAATG+TGG | - | chr1.1:5782701-5782720 | None:intergenic | 20.0% |
| !! | ATATGACAATAATCAATTGT+TGG | + | chr1.1:5782962-5782981 | MS.gene32985:intron | 20.0% |
| !! | ATTGATTAAGAAAGAAATGT+GGG | - | chr1.1:5782700-5782719 | None:intergenic | 20.0% |
| !! | TAAGAAAAAGATACAGAATA+GGG | - | chr1.1:5784250-5784269 | None:intergenic | 20.0% |
| !! | TTAAGAAAAAGATACAGAAT+AGG | - | chr1.1:5784251-5784270 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGATGATTTTGAT+TGG | - | chr1.1:5782920-5782939 | None:intergenic | 20.0% |
| ! | AATATTCACCAAACATGAAA+CGG | - | chr1.1:5783782-5783801 | None:intergenic | 25.0% |
| ! | ACAATAATCAATTGTTGGAT+TGG | + | chr1.1:5782967-5782986 | MS.gene32985:intron | 25.0% |
| ! | ATCAATTGTATGTGGTATAT+TGG | - | chr1.1:5784350-5784369 | None:intergenic | 25.0% |
| ! | ATCCAAAAAGAAATAAAGCA+AGG | - | chr1.1:5784014-5784033 | None:intergenic | 25.0% |
| ! | ATTAAAAAGAGAAGAGAGAA+AGG | - | chr1.1:5782673-5782692 | None:intergenic | 25.0% |
| ! | TTACAAAGTTATGCTATGAA+AGG | + | chr1.1:5783672-5783691 | MS.gene32985:CDS | 25.0% |
| ! | TTCATAGCATAACTTTGTAA+AGG | - | chr1.1:5783672-5783691 | None:intergenic | 25.0% |
| ! | TTGGTCAATAATTTGGAAAT+AGG | - | chr1.1:5784302-5784321 | None:intergenic | 25.0% |
| ! | TTTGGTAGATAGGTTATAAT+GGG | + | chr1.1:5783735-5783754 | MS.gene32985:intron | 25.0% |
| !! | AAATCTTTTAGTACCAAACT+TGG | + | chr1.1:5783267-5783286 | MS.gene32985:CDS | 25.0% |
| !! | TTTTGGTAGATAGGTTATAA+TGG | + | chr1.1:5783734-5783753 | MS.gene32985:intron | 25.0% |
| !!! | AAAACGAAGAAGTATTTTAC+AGG | + | chr1.1:5783074-5783093 | MS.gene32985:intron | 25.0% |
| !!! | AAACGAAGAAGTATTTTACA+GGG | + | chr1.1:5783075-5783094 | MS.gene32985:intron | 25.0% |
| !!! | ATCCTTGCTTTATTTCTTTT+TGG | + | chr1.1:5784009-5784028 | MS.gene32985:intron | 25.0% |
| AAGAAAATACCTATTGGGTA+AGG | - | chr1.1:5782837-5782856 | None:intergenic | 30.0% | |
| AGATGATTGAAAAAACTGAG+TGG | + | chr1.1:5783832-5783851 | MS.gene32985:intron | 30.0% | |
| ATGGGATAAAACTGAACATA+TGG | + | chr1.1:5783753-5783772 | MS.gene32985:intron | 30.0% | |
| CATCTTGTTGGTCAATAATT+TGG | - | chr1.1:5784309-5784328 | None:intergenic | 30.0% | |
| CATTAATTGCACTTTGTGTT+TGG | - | chr1.1:5783974-5783993 | None:intergenic | 30.0% | |
| CATTCCCATAAACCTATATT+CGG | - | chr1.1:5783214-5783233 | None:intergenic | 30.0% | |
| CATTCTGCATAACAAGAAAA+AGG | - | chr1.1:5784570-5784589 | None:intergenic | 30.0% | |
| CTTACAGAATCAATTGTATG+TGG | - | chr1.1:5784358-5784377 | None:intergenic | 30.0% | |
| GAAGGAAAACAAGATCAAAT+TGG | - | chr1.1:5783419-5783438 | None:intergenic | 30.0% | |
| TAAAAGATTTCAACCCTGAA+TGG | - | chr1.1:5783257-5783276 | None:intergenic | 30.0% | |
| TCTAACAATTCTATCATCCT+CGG | - | chr1.1:5782768-5782787 | None:intergenic | 30.0% | |
| TGCAATTGAGCAATTAACAT+TGG | - | chr1.1:5784083-5784102 | None:intergenic | 30.0% | |
| TTACAGGGTTAAAGTGTAAT+GGG | + | chr1.1:5783090-5783109 | MS.gene32985:intron | 30.0% | |
| TTCTCCGAATATAGGTTTAT+GGG | + | chr1.1:5783207-5783226 | MS.gene32985:intron | 30.0% | |
| TTTACAGGGTTAAAGTGTAA+TGG | + | chr1.1:5783089-5783108 | MS.gene32985:intron | 30.0% | |
| TTTCTCCGAATATAGGTTTA+TGG | + | chr1.1:5783206-5783225 | MS.gene32985:intron | 30.0% | |
| ! | ACACAGGTATATGTTTTCTT+TGG | - | chr1.1:5783887-5783906 | None:intergenic | 30.0% |
| ! | ACATTTTCAGTGGAATCAAA+AGG | - | chr1.1:5783860-5783879 | None:intergenic | 30.0% |
| ! | AGGTTTGTTCATCATGAATT+TGG | - | chr1.1:5782817-5782836 | None:intergenic | 30.0% |
| ! | CACAGGTATATGTTTTCTTT+GGG | - | chr1.1:5783886-5783905 | None:intergenic | 30.0% |
| ! | GGTTTGTTCATCATGAATTT+GGG | - | chr1.1:5782816-5782835 | None:intergenic | 30.0% |
| ! | TGTTGTGTATCAAACACTTT+TGG | + | chr1.1:5783904-5783923 | MS.gene32985:intron | 30.0% |
| ! | TTATTGTAAGGCATCATTGT+TGG | + | chr1.1:5784387-5784406 | MS.gene32985:intron | 30.0% |
| !! | CTTTTTCTTGTTATGCAGAA+TGG | + | chr1.1:5784568-5784587 | MS.gene32985:intron | 30.0% |
| !! | TACTTCTTCGTTTTTAAACG+AGG | - | chr1.1:5783068-5783087 | None:intergenic | 30.0% |
| !! | TTTTGATTCCACTGAAAATG+TGG | + | chr1.1:5783859-5783878 | MS.gene32985:intron | 30.0% |
| !!! | AGGTAATTTAAGCTAGCTTT+TGG | + | chr1.1:5783717-5783736 | MS.gene32985:intron | 30.0% |
| !!! | TGATGATTTTGATTGGATGA+CGG | - | chr1.1:5782913-5782932 | None:intergenic | 30.0% |
| !!! | TGTAATGGGTACGATATTTT+AGG | + | chr1.1:5783104-5783123 | MS.gene32985:intron | 30.0% |
| AAAGGAAACATGTAAAGCGA+AGG | - | chr1.1:5784552-5784571 | None:intergenic | 35.0% | |
| AACAAACCTCCATGAAATCT+TGG | - | chr1.1:5784148-5784167 | None:intergenic | 35.0% | |
| AAGCGTTTGCAGTTATTGTA+AGG | + | chr1.1:5784375-5784394 | MS.gene32985:intron | 35.0% | |
| AAGTGTTTGATACACAACAC+AGG | - | chr1.1:5783903-5783922 | None:intergenic | 35.0% | |
| ACTCTTGTCTGAGTTACTAT+TGG | + | chr1.1:5783027-5783046 | MS.gene32985:intron | 35.0% | |
| ACTTAACAAGCCAAACACTA+GGG | - | chr1.1:5784499-5784518 | None:intergenic | 35.0% | |
| ACTTTGTAAAGGATACAGTG+TGG | - | chr1.1:5783661-5783680 | None:intergenic | 35.0% | |
| ATCACAAGACACTGATATTG+TGG | + | chr1.1:5783338-5783357 | MS.gene32985:CDS | 35.0% | |
| ATGAACAAACCTTACCCAAT+AGG | + | chr1.1:5782825-5782844 | MS.gene32985:CDS | 35.0% | |
| ATGTGGAAAGCTCCAAAATA+TGG | + | chr1.1:5784643-5784662 | MS.gene32985:CDS | 35.0% | |
| CAAAGTTATGCTATGAAAGG+AGG | + | chr1.1:5783675-5783694 | MS.gene32985:CDS | 35.0% | |
| CTATAATGACCAACCATTCA+GGG | + | chr1.1:5783241-5783260 | MS.gene32985:CDS | 35.0% | |
| CTTAGAATTTCCCTAGTGTT+TGG | + | chr1.1:5784486-5784505 | MS.gene32985:intron | 35.0% | |
| GCGAAGGAATAATACAGTAA+TGG | - | chr1.1:5784536-5784555 | None:intergenic | 35.0% | |
| TAGTGAACAAAATGCTGATG+TGG | + | chr1.1:5783467-5783486 | MS.gene32985:CDS | 35.0% | |
| TATGGTTTCCGTTTCATGTT+TGG | + | chr1.1:5783771-5783790 | MS.gene32985:intron | 35.0% | |
| ! | GCATTCTTTTCTCCGAATAT+AGG | + | chr1.1:5783199-5783218 | MS.gene32985:intron | 35.0% |
| ! | GGAAATAGGTTTAAAGCGAA+TGG | - | chr1.1:5784288-5784307 | None:intergenic | 35.0% |
| ! | GTTTTCCTTCCAAGATTTCA+TGG | + | chr1.1:5784136-5784155 | MS.gene32985:CDS | 35.0% |
| ! | TATGTAGTTTTCAGAAACCG+AGG | + | chr1.1:5782748-5782767 | MS.gene32985:intron | 35.0% |
| ! | TTTCTTGTTATGCAGAATGG+TGG | + | chr1.1:5784571-5784590 | MS.gene32985:intron | 35.0% |
| !! | AAGATGATGGATCGATGAAA+CGG | - | chr1.1:5782572-5782591 | None:intergenic | 35.0% |
| !! | TCTTCGTTTTTAAACGAGGA+GGG | - | chr1.1:5783064-5783083 | None:intergenic | 35.0% |
| !! | TTCTTCGTTTTTAAACGAGG+AGG | - | chr1.1:5783065-5783084 | None:intergenic | 35.0% |
| !! | TTTGATTTTTGCTTTGCTGC+AGG | + | chr1.1:5784211-5784230 | MS.gene32985:intron | 35.0% |
| !!! | ACGAGATAGCTTTTAAGATG+TGG | + | chr1.1:5784626-5784645 | MS.gene32985:CDS | 35.0% |
| !!! | GATCTTGTTTTCCTTCATGT+TGG | + | chr1.1:5783423-5783442 | MS.gene32985:CDS | 35.0% |
| !!! | TAAGCTAGCTTTTGGTAGAT+AGG | + | chr1.1:5783725-5783744 | MS.gene32985:intron | 35.0% |
| AAATGCTGATGTGGAGTTTG+TGG | + | chr1.1:5783476-5783495 | MS.gene32985:CDS | 40.0% | |
| AACAACACTGAAGCCAAGTT+TGG | - | chr1.1:5783283-5783302 | None:intergenic | 40.0% | |
| AACCTCCATGAAATCTTGGA+AGG | - | chr1.1:5784144-5784163 | None:intergenic | 40.0% | |
| AGATTTCAACCCTGAATGGT+TGG | - | chr1.1:5783253-5783272 | None:intergenic | 40.0% | |
| AGGTTTGTGTGAGAAGATGA+TGG | - | chr1.1:5782585-5782604 | None:intergenic | 40.0% | |
| ATCTCACAATACCAGCAGAT+AGG | + | chr1.1:5784596-5784615 | MS.gene32985:CDS | 40.0% | |
| CACTTAACAAGCCAAACACT+AGG | - | chr1.1:5784500-5784519 | None:intergenic | 40.0% | |
| CTTCTTTGACACTGAAAACC+TGG | - | chr1.1:5783613-5783632 | None:intergenic | 40.0% | |
| GAGCAATTAACATTGGCGAA+TGG | - | chr1.1:5784076-5784095 | None:intergenic | 40.0% | |
| GCTATAATGACCAACCATTC+AGG | + | chr1.1:5783240-5783259 | MS.gene32985:CDS | 40.0% | |
| TGTTGTTCAGTTGGATGAGT+TGG | + | chr1.1:5783296-5783315 | MS.gene32985:CDS | 40.0% | |
| TTCCTTCCAAGATTTCATGG+AGG | + | chr1.1:5784139-5784158 | MS.gene32985:CDS | 40.0% | |
| TTGTCTGTTGTCATGAGCTA+TGG | + | chr1.1:5783564-5783583 | MS.gene32985:CDS | 40.0% | |
| ! | AAGTTGCTTGGCTTTCAAGA+AGG | + | chr1.1:5783375-5783394 | MS.gene32985:CDS | 40.0% |
| ! | AGTTGCTTGGCTTTCAAGAA+GGG | + | chr1.1:5783376-5783395 | MS.gene32985:CDS | 40.0% |
| ! | CAGGTTTTCAGTGTCAAAGA+AGG | + | chr1.1:5783611-5783630 | MS.gene32985:CDS | 40.0% |
| ! | CTTTCAAGAAGGGAAGGTTT+TGG | + | chr1.1:5783386-5783405 | MS.gene32985:CDS | 40.0% |
| ! | GTTGAGATTCTCAAGTTGCT+TGG | + | chr1.1:5783363-5783382 | MS.gene32985:CDS | 40.0% |
| !! | AGATGATGGATCGATGAAAC+GGG | - | chr1.1:5782571-5782590 | None:intergenic | 40.0% |
| AATAATGAGACAAGCGCAGC+CGG | + | chr1.1:5783515-5783534 | MS.gene32985:CDS | 45.0% | |
| AATTACCTCACATCCTTGCG+AGG | - | chr1.1:5783705-5783724 | None:intergenic | 45.0% | |
| ACCTCCATACCAAATGATGC+AGG | + | chr1.1:5784048-5784067 | MS.gene32985:intron | 45.0% | |
| AGAAGAGAGAAAGGAACCTG+AGG | - | chr1.1:5782664-5782683 | None:intergenic | 45.0% | |
| CAACAAGATGTGTGCTTGAG+TGG | + | chr1.1:5784319-5784338 | MS.gene32985:intron | 45.0% | |
| CACTCAAGCACACATCTTGT+TGG | - | chr1.1:5784321-5784340 | None:intergenic | 45.0% | |
| CAGAATAGGGCCTCGTAATA+AGG | - | chr1.1:5784237-5784256 | None:intergenic | 45.0% | |
| CTCGCAAGGATAATGTACAG+AGG | + | chr1.1:5784114-5784133 | MS.gene32985:CDS | 45.0% | |
| GAAGAGAGAAAGGAACCTGA+GGG | - | chr1.1:5782663-5782682 | None:intergenic | 45.0% | |
| GTCAAAGAAGGTTGACGAGA+AGG | + | chr1.1:5783623-5783642 | MS.gene32985:CDS | 45.0% | |
| TATAGAATCAGCGATCGGCT+TGG | - | chr1.1:5782534-5782553 | None:intergenic | 45.0% | |
| TCATGTTGGAGCTGGTGAAA+AGG | + | chr1.1:5783437-5783456 | MS.gene32985:CDS | 45.0% | |
| TGTGGAGTTTGTGGATGCAT+TGG | + | chr1.1:5783485-5783504 | MS.gene32985:CDS | 45.0% | |
| TGTTGTCATGAGCTATGGCA+AGG | + | chr1.1:5783569-5783588 | MS.gene32985:CDS | 45.0% | |
| TTTCACCAGCTCCAACATGA+AGG | - | chr1.1:5783437-5783456 | None:intergenic | 45.0% | |
| ! | CTTTGGGTCCACATTTTCAG+TGG | - | chr1.1:5783870-5783889 | None:intergenic | 45.0% |
| ! | GAGTTTGTGGATGCATTGGT+TGG | + | chr1.1:5783489-5783508 | MS.gene32985:CDS | 45.0% |
| ! | GTTTTCCTTCATGTTGGAGC+TGG | + | chr1.1:5783429-5783448 | MS.gene32985:CDS | 45.0% |
| ! | TGGCTTCAGTGTTGTTCAGT+TGG | + | chr1.1:5783287-5783306 | MS.gene32985:CDS | 45.0% |
| !! | AGCCGATCGCTGATTCTATA+CGG | + | chr1.1:5782534-5782553 | MS.gene32985:CDS | 45.0% |
| ATAATGAGACAAGCGCAGCC+GGG | + | chr1.1:5783516-5783535 | MS.gene32985:CDS | 50.0% | |
| CATGAGCTATGGCAAGGTCT+TGG | + | chr1.1:5783575-5783594 | MS.gene32985:CDS | 50.0% | |
| CGAATGGTGCCTGCATCATT+TGG | - | chr1.1:5784060-5784079 | None:intergenic | 50.0% | |
| CGAGAACCAACATCAGATCC+CGG | - | chr1.1:5783537-5783556 | None:intergenic | 50.0% | |
| CGCCGTATAGAATCAGCGAT+CGG | - | chr1.1:5782539-5782558 | None:intergenic | 50.0% | |
| CTCTCCAATTCCAATCCCTC+AGG | + | chr1.1:5782645-5782664 | MS.gene32985:CDS | 50.0% | |
| GAGAAAGGAACCTGAGGGAT+TGG | - | chr1.1:5782658-5782677 | None:intergenic | 50.0% | |
| GCCTGCATCATTTGGTATGG+AGG | - | chr1.1:5784052-5784071 | None:intergenic | 50.0% | |
| GGAACCTGAGGGATTGGAAT+TGG | - | chr1.1:5782652-5782671 | None:intergenic | 50.0% | |
| GGAGCTGGTGAAAAGGACAA+TGG | + | chr1.1:5783444-5783463 | MS.gene32985:CDS | 50.0% | |
| GGTGCCTGCATCATTTGGTA+TGG | - | chr1.1:5784055-5784074 | None:intergenic | 50.0% | |
| TCGTGCAAGAACCTATCTGC+TGG | - | chr1.1:5784610-5784629 | None:intergenic | 50.0% | |
| TCTTGGAGGATGATGAGTCC+AGG | + | chr1.1:5783592-5783611 | MS.gene32985:CDS | 50.0% | |
| ! | GCTTGGCTTTCAAGAAGGGA+AGG | + | chr1.1:5783380-5783399 | MS.gene32985:CDS | 50.0% |
| ! | GGAGAGAGTTAAGAAAGCGC+AGG | - | chr1.1:5782631-5782650 | None:intergenic | 50.0% |
| !! | TCGCTGATTCTATACGGCGA+TGG | + | chr1.1:5782540-5782559 | MS.gene32985:CDS | 50.0% |
| !! | TTGCTGCAGGCCTTATTACG+AGG | + | chr1.1:5784224-5784243 | MS.gene32985:intron | 50.0% |
| AGAGAGAAGCGAGGGACTGA+AGG | - | chr1.1:5782605-5782624 | None:intergenic | 55.0% | |
| GAAAGGAGGAGTTCCTCGCA+AGG | + | chr1.1:5783689-5783708 | MS.gene32985:CDS | 55.0% | |
| GAGCTATGGCAAGGTCTTGG+AGG | + | chr1.1:5783578-5783597 | MS.gene32985:CDS | 55.0% | |
| GAGTTCCTCGCAAGGATGTG+AGG | + | chr1.1:5783697-5783716 | MS.gene32985:CDS | 55.0% | |
| GCAACATGCTGTGACTCGCA+AGG | + | chr1.1:5784100-5784119 | MS.gene32985:CDS | 55.0% | |
| GCAGGAAGAGAGAGAAGCGA+GGG | - | chr1.1:5782613-5782632 | None:intergenic | 55.0% | |
| ! | CACTTTTGGCGTGACTCGCA+AGG | + | chr1.1:5783918-5783937 | MS.gene32985:intron | 55.0% |
| CGCAGGAAGAGAGAGAAGCG+AGG | - | chr1.1:5782614-5782633 | None:intergenic | 60.0% | |
| GCGCAGCCGGGATCTGATGT+TGG | + | chr1.1:5783528-5783547 | MS.gene32985:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5782519 | 5784672 | 5782519 | ID=MS.gene32985 |
| chr1.1 | mRNA | 5782519 | 5784672 | 5782519 | ID=MS.gene32985.t1;Parent=MS.gene32985 |
| chr1.1 | exon | 5782519 | 5782666 | 5782519 | ID=MS.gene32985.t1.exon1;Parent=MS.gene32985.t1 |
| chr1.1 | CDS | 5782519 | 5782666 | 5782519 | ID=cds.MS.gene32985.t1;Parent=MS.gene32985.t1 |
| chr1.1 | exon | 5782762 | 5782846 | 5782762 | ID=MS.gene32985.t1.exon2;Parent=MS.gene32985.t1 |
| chr1.1 | CDS | 5782762 | 5782846 | 5782762 | ID=cds.MS.gene32985.t1;Parent=MS.gene32985.t1 |
| chr1.1 | exon | 5783221 | 5783718 | 5783221 | ID=MS.gene32985.t1.exon3;Parent=MS.gene32985.t1 |
| chr1.1 | CDS | 5783221 | 5783718 | 5783221 | ID=cds.MS.gene32985.t1;Parent=MS.gene32985.t1 |
| chr1.1 | exon | 5784070 | 5784160 | 5784070 | ID=MS.gene32985.t1.exon4;Parent=MS.gene32985.t1 |
| chr1.1 | CDS | 5784070 | 5784160 | 5784070 | ID=cds.MS.gene32985.t1;Parent=MS.gene32985.t1 |
| chr1.1 | exon | 5784586 | 5784672 | 5784586 | ID=MS.gene32985.t1.exon5;Parent=MS.gene32985.t1 |
| chr1.1 | CDS | 5784586 | 5784672 | 5784586 | ID=cds.MS.gene32985.t1;Parent=MS.gene32985.t1 |
| Gene Sequence |
| Protein sequence |
