Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33344.t1 | XP_013454728.1 | 99.5 | 396 | 2 | 0 | 1 | 396 | 1 | 396 | 2.00E-229 | 804.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33344.t1 | Q9C969 | 68.6 | 395 | 123 | 1 | 1 | 395 | 1 | 394 | 1.8e-167 | 590.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33344.t1 | A0A072UG88 | 99.5 | 396 | 2 | 0 | 1 | 396 | 1 | 396 | 1.4e-229 | 804.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40160 | MS.gene33344 | PPI |
| MS.gene33344 | MS.gene028573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33344.t1 | MTR_4g011820 | 99.495 | 396 | 2 | 0 | 1 | 396 | 1 | 396 | 0.0 | 815 |
| MS.gene33344.t1 | MTR_7g106830 | 30.028 | 353 | 220 | 8 | 62 | 394 | 128 | 473 | 2.62e-42 | 154 |
| MS.gene33344.t1 | MTR_8g091280 | 29.661 | 354 | 220 | 10 | 62 | 394 | 130 | 475 | 5.78e-40 | 148 |
| MS.gene33344.t1 | MTR_1807s0010 | 27.507 | 349 | 220 | 9 | 62 | 388 | 62 | 399 | 3.31e-23 | 100 |
| MS.gene33344.t1 | MTR_3g072670 | 25.062 | 403 | 261 | 17 | 6 | 387 | 63 | 445 | 1.04e-20 | 94.0 |
| MS.gene33344.t1 | MTR_3g072680 | 25.185 | 405 | 258 | 17 | 6 | 387 | 20 | 402 | 1.45e-20 | 93.2 |
| MS.gene33344.t1 | MTR_1g087760 | 25.070 | 359 | 245 | 9 | 5 | 353 | 3 | 347 | 2.23e-20 | 92.4 |
| MS.gene33344.t1 | MTR_8g101750 | 22.059 | 340 | 220 | 12 | 75 | 382 | 97 | 423 | 2.33e-15 | 77.8 |
| MS.gene33344.t1 | MTR_2g008430 | 29.080 | 337 | 213 | 14 | 64 | 382 | 108 | 436 | 3.96e-15 | 77.0 |
| MS.gene33344.t1 | MTR_6g091760 | 23.512 | 336 | 220 | 12 | 75 | 382 | 105 | 431 | 6.38e-15 | 76.3 |
| MS.gene33344.t1 | MTR_8g098930 | 22.599 | 354 | 234 | 14 | 61 | 382 | 87 | 432 | 9.46e-15 | 76.3 |
| MS.gene33344.t1 | MTR_3g103550 | 22.727 | 352 | 231 | 12 | 64 | 382 | 81 | 424 | 1.56e-14 | 75.5 |
| MS.gene33344.t1 | MTR_4g092620 | 25.333 | 300 | 186 | 10 | 62 | 336 | 125 | 411 | 9.31e-13 | 69.7 |
| MS.gene33344.t1 | MTR_8g023140 | 25.073 | 343 | 197 | 16 | 64 | 357 | 154 | 485 | 3.96e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33344.t1 | AT1G80360 | 68.608 | 395 | 123 | 1 | 1 | 395 | 1 | 394 | 0.0 | 595 |
| MS.gene33344.t1 | AT1G80360 | 68.608 | 395 | 123 | 1 | 1 | 395 | 1 | 394 | 0.0 | 595 |
| MS.gene33344.t1 | AT1G80360 | 68.608 | 395 | 123 | 1 | 1 | 395 | 1 | 394 | 0.0 | 595 |
| MS.gene33344.t1 | AT1G80360 | 68.608 | 395 | 123 | 1 | 1 | 395 | 1 | 394 | 0.0 | 595 |
| MS.gene33344.t1 | AT2G22250 | 28.756 | 386 | 247 | 9 | 25 | 390 | 47 | 424 | 1.20e-42 | 154 |
| MS.gene33344.t1 | AT2G22250 | 28.756 | 386 | 247 | 9 | 25 | 390 | 94 | 471 | 3.62e-42 | 154 |
| MS.gene33344.t1 | AT2G22250 | 28.756 | 386 | 247 | 9 | 25 | 390 | 94 | 471 | 3.62e-42 | 154 |
| MS.gene33344.t1 | AT1G77670 | 23.383 | 402 | 273 | 14 | 6 | 389 | 56 | 440 | 1.62e-18 | 87.4 |
| MS.gene33344.t1 | AT2G13810 | 25.485 | 361 | 213 | 13 | 64 | 391 | 108 | 445 | 1.22e-15 | 78.6 |
| MS.gene33344.t1 | AT4G33680 | 27.445 | 317 | 180 | 11 | 51 | 336 | 116 | 413 | 9.95e-15 | 75.9 |
| MS.gene33344.t1 | AT4G11280 | 23.944 | 355 | 228 | 15 | 60 | 382 | 89 | 433 | 1.00e-14 | 76.3 |
| MS.gene33344.t1 | AT2G24850 | 23.894 | 339 | 230 | 11 | 64 | 382 | 87 | 417 | 3.72e-14 | 74.3 |
| MS.gene33344.t1 | AT1G72330 | 24.561 | 342 | 200 | 13 | 64 | 357 | 170 | 501 | 9.77e-13 | 70.1 |
| MS.gene33344.t1 | AT1G72330 | 27.615 | 239 | 132 | 9 | 155 | 357 | 281 | 514 | 1.57e-12 | 69.3 |
| MS.gene33344.t1 | AT4G26200 | 22.899 | 345 | 220 | 15 | 75 | 386 | 111 | 442 | 3.48e-12 | 68.2 |
| MS.gene33344.t1 | AT5G51690 | 22.599 | 354 | 245 | 12 | 60 | 388 | 21 | 370 | 4.17e-12 | 67.4 |
| MS.gene33344.t1 | AT5G51690 | 22.599 | 354 | 245 | 12 | 60 | 388 | 144 | 493 | 5.98e-12 | 67.4 |
| MS.gene33344.t1 | AT2G22810 | 22.727 | 330 | 217 | 11 | 83 | 382 | 105 | 426 | 9.39e-11 | 63.9 |
Find 111 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGGAGAAGGTTCTATTAA+AGG | 0.220827 | 4.4:+87788495 | MS.gene33344:CDS |
| GCATCTGGATAAAGTGTTTC+CGG | 0.228182 | 4.4:-87786490 | None:intergenic |
| TTAATTACCTTAACCATAAT+AGG | 0.237814 | 4.4:-87784498 | None:intergenic |
| CAGAGCAGCATTAGTGAAAA+AGG | 0.275011 | 4.4:+87785729 | MS.gene33344:CDS |
| ACTCGTTCGGTAACCCATTC+AGG | 0.279683 | 4.4:-87788423 | None:intergenic |
| TGCACTCTACTCCTTAGAAT+TGG | 0.283839 | 4.4:+87788398 | MS.gene33344:CDS |
| AAAAGAAAGATGGGTTCTTA+TGG | 0.325486 | 4.4:+87784441 | None:intergenic |
| AGCTAAGAATGCTGTGTCTT+TGG | 0.329353 | 4.4:+87784639 | MS.gene33344:CDS |
| TAAGAAAGGTTTGGAAGAAT+TGG | 0.333107 | 4.4:+87788713 | MS.gene33344:CDS |
| ACCTTATCCAAAGCTTGCTT+TGG | 0.345995 | 4.4:-87785643 | None:intergenic |
| GCAGCACCGCACGCACTTCC+AGG | 0.349728 | 4.4:-87788624 | None:intergenic |
| TTGTTCGCTGGCTAGCTAAT+AGG | 0.359579 | 4.4:+87788583 | MS.gene33344:CDS |
| TTTACAATAGTTACTAGCTT+CGG | 0.361088 | 4.4:-87787318 | None:intergenic |
| TTTGCACAAATCCTCGGTTA+TGG | 0.370716 | 4.4:+87786169 | MS.gene33344:CDS |
| ATAAAGTGTTTCCGGGTTAC+CGG | 0.370893 | 4.4:-87786482 | None:intergenic |
| TATTGGTAATGCCAGTCATT+TGG | 0.376721 | 4.4:-87786447 | None:intergenic |
| GGAAACTGAGATGCCTATTA+TGG | 0.380670 | 4.4:+87784485 | MS.gene33344:CDS |
| CCATTCAGGTCCCAATTCTA+AGG | 0.385511 | 4.4:-87788409 | None:intergenic |
| GCATACCCTTCTGAAGTAGA+AGG | 0.386056 | 4.4:+87788306 | MS.gene33344:CDS |
| TTATCCAAAGCTTGCTTTGG+AGG | 0.394216 | 4.4:-87785640 | None:intergenic |
| TGAGATGCCTATTATGGTTA+AGG | 0.394646 | 4.4:+87784491 | MS.gene33344:CDS |
| GAGAAGGAGCTATATACCTT+TGG | 0.395158 | 4.4:+87788520 | MS.gene33344:CDS |
| GTAAATCCTGGCAATCCAAC+TGG | 0.395490 | 4.4:+87787336 | MS.gene33344:CDS |
| GAGCCTTCTATTAGTCGTTA+TGG | 0.396409 | 4.4:+87785682 | MS.gene33344:CDS |
| GGAAGTGCGTGCGGTGCTGC+TGG | 0.401509 | 4.4:+87788627 | MS.gene33344:CDS |
| TTGGAGGCCCTTTCTTCTCT+CGG | 0.402434 | 4.4:+87788477 | MS.gene33344:CDS |
| GAATGCTGTGTCTTTGGCTC+AGG | 0.403806 | 4.4:+87784645 | MS.gene33344:CDS |
| CTTAGAATTGGGACCTGAAT+GGG | 0.407280 | 4.4:+87788410 | MS.gene33344:CDS |
| ACTAATGCTGCTCTGAGTTC+AGG | 0.408355 | 4.4:-87785721 | None:intergenic |
| GAAATTATTGAAGCACAGAT+TGG | 0.414853 | 4.4:-87788366 | None:intergenic |
| GCAATGACTTTACCTGCATC+TGG | 0.415721 | 4.4:-87786505 | None:intergenic |
| CATCTGGATAAAGTGTTTCC+GGG | 0.418128 | 4.4:-87786489 | None:intergenic |
| GCAACCTCCAAAGCAAGCTT+TGG | 0.419168 | 4.4:+87785636 | MS.gene33344:CDS |
| TTACAATAGTTACTAGCTTC+GGG | 0.420849 | 4.4:-87787317 | None:intergenic |
| GGAATGATGGGATGGCGAAT+TGG | 0.421184 | 4.4:+87787994 | MS.gene33344:CDS |
| GGTTACAGCCGGTGCCAATC+AGG | 0.424776 | 4.4:+87786190 | MS.gene33344:CDS |
| ACCGGGACCAACTAGTATAT+TGG | 0.429326 | 4.4:-87786464 | None:intergenic |
| TAGGTTCCAGTTGGATTGCC+AGG | 0.430279 | 4.4:-87787342 | None:intergenic |
| GGAAATCTTAGAATCTCGTT+TGG | 0.435661 | 4.4:+87788648 | MS.gene33344:CDS |
| GCACTCTACTCCTTAGAATT+GGG | 0.437159 | 4.4:+87788399 | MS.gene33344:CDS |
| CTAGTAACTATTGTAAATCC+TGG | 0.440627 | 4.4:+87787324 | MS.gene33344:CDS |
| CTCGAAAGCATATGGAATGA+TGG | 0.442266 | 4.4:+87787981 | MS.gene33344:CDS |
| AGAAAGGCTTAAGAAAGGTT+TGG | 0.446109 | 4.4:+87788704 | MS.gene33344:CDS |
| CCTTAGAATTGGGACCTGAA+TGG | 0.449662 | 4.4:+87788409 | MS.gene33344:CDS |
| AGAAGGAGCTATATACCTTT+GGG | 0.455675 | 4.4:+87788521 | MS.gene33344:CDS |
| CACAGATTGGAATGTTGTCT+TGG | 0.456455 | 4.4:-87788353 | None:intergenic |
| AGAATTGGTTGCACATGGTT+TGG | 0.459653 | 4.4:+87788728 | MS.gene33344:CDS |
| GCCCTTTCTTCTCTCGGAGA+AGG | 0.462214 | 4.4:+87788483 | MS.gene33344:CDS |
| GAGACCTTTAGAAGAGACTC+TGG | 0.464117 | 4.4:-87787369 | None:intergenic |
| TTACCATAACGACTAATAGA+AGG | 0.467287 | 4.4:-87785685 | None:intergenic |
| AGCTGGCTCTTGGCTTGTTG+TGG | 0.474046 | 4.4:+87787568 | MS.gene33344:CDS |
| CCTTCTGAAGTAGAAGGGCT+TGG | 0.476025 | 4.4:+87788312 | MS.gene33344:CDS |
| GTTCTTACTCTATGTGATGC+GGG | 0.477132 | 4.4:+87786373 | MS.gene33344:CDS |
| TGTCTTGGACTTTGAGAAGT+TGG | 0.477434 | 4.4:-87788338 | None:intergenic |
| AATCTTAGAATCTCGTTTGG+AGG | 0.482371 | 4.4:+87788651 | MS.gene33344:CDS |
| GCAAATCTGTGCGAGAAAGC+TGG | 0.483447 | 4.4:+87787551 | MS.gene33344:CDS |
| TAGAAGAGACTCTGGAATGT+AGG | 0.483849 | 4.4:-87787361 | None:intergenic |
| GTCTTGGACTTTGAGAAGTT+GGG | 0.486069 | 4.4:-87788337 | None:intergenic |
| CACGGGATTGCTGTTATCCC+TGG | 0.486363 | 4.4:+87788606 | MS.gene33344:CDS |
| ACCTTCTCCGAGAGAAGAAA+GGG | 0.488063 | 4.4:-87788484 | None:intergenic |
| ATGTATGAATTGAAGTAGTA+AGG | 0.492382 | 4.4:-87786418 | None:intergenic |
| TGTGCGAGAAAGCTGGCTCT+TGG | 0.499168 | 4.4:+87787558 | MS.gene33344:CDS |
| GAACAGACAAATTGTCTTGG+AGG | 0.501204 | 4.4:+87788461 | MS.gene33344:CDS |
| TCCAAAGCAAGCTTTGGATA+AGG | 0.507009 | 4.4:+87785642 | MS.gene33344:CDS |
| GGCATTACCAATATACTAGT+TGG | 0.508183 | 4.4:+87786457 | MS.gene33344:CDS |
| GGTTCTATTAAAGGAGGAGA+AGG | 0.509181 | 4.4:+87788504 | MS.gene33344:CDS |
| CATTCCAGAGTCTCTTCTAA+AGG | 0.515139 | 4.4:+87787365 | MS.gene33344:CDS |
| GCAGCAGAAAGGCTTAAGAA+AGG | 0.515657 | 4.4:+87788699 | MS.gene33344:CDS |
| TTATGGAAATCTTGCAAAGA+GGG | 0.518324 | 4.4:+87784458 | MS.gene33344:CDS |
| TAAAGTGTTTCCGGGTTACC+GGG | 0.520274 | 4.4:-87786481 | None:intergenic |
| AAATAATTTGCACAAATCCT+CGG | 0.526185 | 4.4:+87786163 | MS.gene33344:CDS |
| ACTAGTTGGTCCCGGTAACC+CGG | 0.528968 | 4.4:+87786471 | MS.gene33344:CDS |
| ATAGTTACTAGCTTCGGGAC+AGG | 0.530753 | 4.4:-87787312 | None:intergenic |
| AACCTTCTCCGAGAGAAGAA+AGG | 0.530812 | 4.4:-87788485 | None:intergenic |
| CGCTGGCTAGCTAATAGGCA+CGG | 0.532935 | 4.4:+87788588 | MS.gene33344:CDS |
| AGTCGTTATGGTAATGATGA+AGG | 0.534093 | 4.4:+87785694 | MS.gene33344:CDS |
| TCGAAAGCATATGGAATGAT+GGG | 0.535229 | 4.4:+87787982 | MS.gene33344:CDS |
| ATGATTTCGAAGTTGTTCGC+TGG | 0.540586 | 4.4:+87788571 | MS.gene33344:CDS |
| TCATCGTAACCATGTCCGCT+TGG | 0.540923 | 4.4:-87788552 | None:intergenic |
| CCAAGCCCTTCTACTTCAGA+AGG | 0.541143 | 4.4:-87788312 | None:intergenic |
| TACATGTCCTTCCAAATGAC+TGG | 0.541298 | 4.4:+87786436 | MS.gene33344:CDS |
| TCCTCGGTTATGGTTACAGC+CGG | 0.542897 | 4.4:+87786179 | MS.gene33344:CDS |
| TAAGAACAGACAAATTGTCT+TGG | 0.553853 | 4.4:+87788458 | MS.gene33344:CDS |
| TTGAAACACACTTGTGTGGA+AGG | 0.559943 | 4.4:+87787931 | MS.gene33344:CDS |
| GAAACACTTTATCCAGATGC+AGG | 0.561975 | 4.4:+87786493 | MS.gene33344:CDS |
| TTCTTACTCTATGTGATGCG+GGG | 0.568076 | 4.4:+87786374 | MS.gene33344:CDS |
| CGCTTGGAATCTTCACCCAA+AGG | 0.571691 | 4.4:-87788536 | None:intergenic |
| ATTGTAGAGCAGCAGCAGAA+AGG | 0.574501 | 4.4:+87788688 | MS.gene33344:CDS |
| CAGCACCGCACGCACTTCCA+GGG | 0.574596 | 4.4:-87788623 | None:intergenic |
| AGTTCTTACTCTATGTGATG+CGG | 0.575309 | 4.4:+87786372 | MS.gene33344:CDS |
| ATTGATCACCTGATTGGCAC+CGG | 0.577365 | 4.4:-87786198 | None:intergenic |
| ACCAATATACTAGTTGGTCC+CGG | 0.579472 | 4.4:+87786463 | MS.gene33344:CDS |
| TCTGGAATGTAGGTTCCAGT+TGG | 0.581009 | 4.4:-87787351 | None:intergenic |
| TTGGAAGAATTGGTTGCACA+TGG | 0.587231 | 4.4:+87788723 | MS.gene33344:CDS |
| AAATCTTGCAAAGAGGGCTG+TGG | 0.590141 | 4.4:+87784464 | MS.gene33344:CDS |
| GTGAAGATTCCAAGCGGACA+TGG | 0.596507 | 4.4:+87788543 | MS.gene33344:CDS |
| CATACCCTTCTGAAGTAGAA+GGG | 0.598726 | 4.4:+87788307 | MS.gene33344:CDS |
| GGTAATGCCAGTCATTTGGA+AGG | 0.600013 | 4.4:-87786443 | None:intergenic |
| GCTGGCTAGCTAATAGGCAC+GGG | 0.607361 | 4.4:+87788589 | MS.gene33344:CDS |
| TCTTACTCTATGTGATGCGG+GGG | 0.608176 | 4.4:+87786375 | MS.gene33344:CDS |
| AAGCATATGGAATGATGGGA+TGG | 0.610773 | 4.4:+87787986 | MS.gene33344:CDS |
| CTTATGGAAATCTTGCAAAG+AGG | 0.623657 | 4.4:+87784457 | MS.gene33344:CDS |
| TGATTTGAAACACACTTGTG+TGG | 0.632329 | 4.4:+87787927 | MS.gene33344:CDS |
| ATTCTAAGGAGTAGAGTGCA+AGG | 0.647441 | 4.4:-87788395 | None:intergenic |
| GTTATCCCTGGAAGTGCGTG+CGG | 0.652820 | 4.4:+87788618 | MS.gene33344:CDS |
| GGAGAAGGTTCTATTAAAGG+AGG | 0.660414 | 4.4:+87788498 | MS.gene33344:CDS |
| CAAGCCCTTCTACTTCAGAA+GGG | 0.667050 | 4.4:-87788311 | None:intergenic |
| CAGATGCAGGAATTGCTACG+AGG | 0.695721 | 4.4:+87784616 | MS.gene33344:intron |
| ACCGGCTGTAACCATAACCG+AGG | 0.713175 | 4.4:-87786180 | None:intergenic |
| GTAAGGAGCATACATAACCA+CGG | 0.721488 | 4.4:-87786401 | None:intergenic |
| CTTTGGGTGAAGATTCCAAG+CGG | 0.736255 | 4.4:+87788537 | MS.gene33344:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAATTATAATTTTAACAT+TGG | - | chr4.4:87784818-87784837 | None:intergenic | 10.0% |
| !! | AACACTAAAATTGAATTAAT+GGG | + | chr4.4:87787717-87787736 | MS.gene33344:intron | 15.0% |
| !! | AATTATAATTTAGTCTAGAT+TGG | + | chr4.4:87784825-87784844 | MS.gene33344:intron | 15.0% |
| !! | ATATATGATATATCTAGAAA+CGG | + | chr4.4:87785283-87785302 | MS.gene33344:intron | 15.0% |
| !! | GATTTATTTCATTAATGTAA+AGG | - | chr4.4:87787635-87787654 | None:intergenic | 15.0% |
| !! | TACAAAAAATTATTGTCAAT+AGG | - | chr4.4:87786072-87786091 | None:intergenic | 15.0% |
| !!! | ATATCAAATTTTATTGTGAT+AGG | + | chr4.4:87786736-87786755 | MS.gene33344:intron | 15.0% |
| !!! | ATTTTTTTTTTTCCCTTTAA+GGG | + | chr4.4:87786600-87786619 | MS.gene33344:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTGTA+GGG | + | chr4.4:87785601-87785620 | MS.gene33344:intron | 15.0% |
| !!! | TTTTTTTTTTTTCTTTCTGT+AGG | + | chr4.4:87785600-87785619 | MS.gene33344:intron | 15.0% |
| !! | CAACACTAAAATTGAATTAA+TGG | + | chr4.4:87787716-87787735 | MS.gene33344:intron | 20.0% |
| !! | GAGAAAATGAATATATCATT+TGG | - | chr4.4:87787474-87787493 | None:intergenic | 20.0% |
| !! | TATATGATATATCTAGAAAC+GGG | + | chr4.4:87785284-87785303 | MS.gene33344:intron | 20.0% |
| !! | TATATTAACAAAACAAGCAT+TGG | - | chr4.4:87784697-87784716 | None:intergenic | 20.0% |
| !! | TCAAATAAGCTAATCTAAAT+AGG | - | chr4.4:87785769-87785788 | None:intergenic | 20.0% |
| !! | TGAAAATAACTCTACAATAT+TGG | - | chr4.4:87787111-87787130 | None:intergenic | 20.0% |
| !! | TTAATGTTCAAATCTTGTAA+AGG | + | chr4.4:87788199-87788218 | MS.gene33344:intron | 20.0% |
| !! | TTAATTACCTTAACCATAAT+AGG | - | chr4.4:87784501-87784520 | None:intergenic | 20.0% |
| !! | TTTCGTAAAAATTTGTCAAT+TGG | - | chr4.4:87788089-87788108 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAAAAGCTTA+TGG | - | chr4.4:87785860-87785879 | None:intergenic | 20.0% |
| !!! | AATTATAAATTAGTCTAGCT+TGG | + | chr4.4:87784889-87784908 | MS.gene33344:intron | 20.0% |
| !!! | AATTTTAGTGTTGTTATCAA+AGG | - | chr4.4:87787709-87787728 | None:intergenic | 20.0% |
| !!! | ATAATTTTAACATTGGAAAG+TGG | - | chr4.4:87784811-87784830 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTTTCCCTTTA+AGG | + | chr4.4:87786599-87786618 | MS.gene33344:intron | 20.0% |
| !!! | GGTTTTACTTTTAAGAAATT+GGG | + | chr4.4:87786623-87786642 | MS.gene33344:intron | 20.0% |
| !!! | TATTATAAATTAGTCTAGCT+TGG | + | chr4.4:87784748-87784767 | MS.gene33344:intron | 20.0% |
| !!! | TGATATGTTTTATGAGTATT+TGG | + | chr4.4:87784554-87784573 | MS.gene33344:intron | 20.0% |
| !!! | TGTGATTACTTTTACTTATA+GGG | + | chr4.4:87786021-87786040 | MS.gene33344:intron | 20.0% |
| !!! | TTTATATGTGTATGTTTTTC+TGG | + | chr4.4:87784853-87784872 | MS.gene33344:intron | 20.0% |
| !!! | TTTTTTTTTTCTTTCTGTAG+GGG | + | chr4.4:87785602-87785621 | MS.gene33344:intron | 20.0% |
| !!! | TTTTTTTTTTTCCCTTTAAG+GGG | + | chr4.4:87786601-87786620 | MS.gene33344:intron | 20.0% |
| ! | AAAAAGCAAAGAATACAACA+AGG | - | chr4.4:87787830-87787849 | None:intergenic | 25.0% |
| ! | AACATGTTACTATAGAATGT+TGG | - | chr4.4:87786923-87786942 | None:intergenic | 25.0% |
| ! | AATGTAAAGGAATTTCCATT+AGG | - | chr4.4:87787622-87787641 | None:intergenic | 25.0% |
| ! | ACAAATCTATTATTCCTAAG+AGG | + | chr4.4:87786576-87786595 | MS.gene33344:intron | 25.0% |
| ! | ACTCCTATTATCAGTATAAT+TGG | - | chr4.4:87786764-87786783 | None:intergenic | 25.0% |
| ! | ATAAACATTTCAGCATTCAT+TGG | + | chr4.4:87786308-87786327 | MS.gene33344:intron | 25.0% |
| ! | ATATGATATATCTAGAAACG+GGG | + | chr4.4:87785285-87785304 | MS.gene33344:intron | 25.0% |
| ! | ATGTATGAATTGAAGTAGTA+AGG | - | chr4.4:87786421-87786440 | None:intergenic | 25.0% |
| ! | ATTAAACTAACAACATTGTC+AGG | + | chr4.4:87786708-87786727 | MS.gene33344:intron | 25.0% |
| ! | ATTGTCAATAGGATGTTTAA+AGG | - | chr4.4:87786061-87786080 | None:intergenic | 25.0% |
| ! | CAAATATCCCAAAATTGAAA+AGG | + | chr4.4:87785435-87785454 | MS.gene33344:intron | 25.0% |
| ! | CAAATCTATTATTCCTAAGA+GGG | + | chr4.4:87786577-87786596 | MS.gene33344:intron | 25.0% |
| ! | CAAATCTTAAGGATCAATTA+AGG | - | chr4.4:87786095-87786114 | None:intergenic | 25.0% |
| ! | CCAATGTTTGAATTATAAAG+TGG | + | chr4.4:87784975-87784994 | MS.gene33344:intron | 25.0% |
| ! | CCACTTTATAATTCAAACAT+TGG | - | chr4.4:87784978-87784997 | None:intergenic | 25.0% |
| ! | GAAAAAAAAAAATCCCTCTT+AGG | - | chr4.4:87786593-87786612 | None:intergenic | 25.0% |
| ! | GAACCAATTATACTGATAAT+AGG | + | chr4.4:87786758-87786777 | MS.gene33344:intron | 25.0% |
| ! | GTTTGTAGATCTTAAATTTG+AGG | + | chr4.4:87787862-87787881 | MS.gene33344:intron | 25.0% |
| ! | TAATCGCAAATTATATAGCT+GGG | - | chr4.4:87786226-87786245 | None:intergenic | 25.0% |
| ! | TATGGTTAAGGTAATTAAGA+AGG | + | chr4.4:87784503-87784522 | MS.gene33344:intron | 25.0% |
| ! | TGAAAAAGGTAAATGATCTA+AGG | + | chr4.4:87785743-87785762 | MS.gene33344:intron | 25.0% |
| ! | TGCATAAACACTTAAAGTAT+AGG | - | chr4.4:87785949-87785968 | None:intergenic | 25.0% |
| ! | TTAATCGCAAATTATATAGC+TGG | - | chr4.4:87786227-87786246 | None:intergenic | 25.0% |
| ! | TTCAAATTGCAGTTACAAAT+TGG | + | chr4.4:87787127-87787146 | MS.gene33344:intron | 25.0% |
| ! | TTCTTTATTCTGTCATAACA+GGG | + | chr4.4:87786249-87786268 | MS.gene33344:intron | 25.0% |
| !! | AAATAATTTGCACAAATCCT+CGG | + | chr4.4:87786163-87786182 | MS.gene33344:CDS | 25.0% |
| !! | AACAAGTTCCTTTTCTAAAT+CGG | + | chr4.4:87787518-87787537 | MS.gene33344:intron | 25.0% |
| !! | TATACTATGATTTTCACTAG+TGG | + | chr4.4:87788253-87788272 | MS.gene33344:intron | 25.0% |
| !! | TGTTTTATGAGTATTTGGAT+TGG | + | chr4.4:87784559-87784578 | MS.gene33344:intron | 25.0% |
| !! | TTTACAATAGTTACTAGCTT+CGG | - | chr4.4:87787321-87787340 | None:intergenic | 25.0% |
| !!! | ATCGCAATTTTTAGAAACAT+AGG | - | chr4.4:87785508-87785527 | None:intergenic | 25.0% |
| !!! | ATTTTCTTGATTTTTCAGAC+TGG | + | chr4.4:87787262-87787281 | MS.gene33344:intron | 25.0% |
| !!! | GGGTTTTACTTTTAAGAAAT+TGG | + | chr4.4:87786622-87786641 | MS.gene33344:intron | 25.0% |
| !!! | GTGTGATTACTTTTACTTAT+AGG | + | chr4.4:87786020-87786039 | MS.gene33344:intron | 25.0% |
| !!! | TGTTGTATTCTTTGCTTTTT+TGG | + | chr4.4:87787830-87787849 | MS.gene33344:intron | 25.0% |
| !!! | TTCAATTTTGGGATATTTGA+TGG | - | chr4.4:87785434-87785453 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTGTCTCTCATT+GGG | + | chr4.4:87784528-87784547 | MS.gene33344:intron | 25.0% |
| !!! | TTTCTTTTTTTGTCTCTCAT+TGG | + | chr4.4:87784527-87784546 | MS.gene33344:intron | 25.0% |
| !!! | TTTGTTTGCTATTAATCCAA+TGG | - | chr4.4:87786561-87786580 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAAAAGTACACTT+TGG | + | chr4.4:87785086-87785105 | MS.gene33344:intron | 25.0% |
| !!! | TTTTTTTTTCTTTCTGTAGG+GGG | + | chr4.4:87785603-87785622 | MS.gene33344:intron | 25.0% |
| !!! | TTTTTTTTTTCCCTTTAAGG+GGG | + | chr4.4:87786602-87786621 | MS.gene33344:intron | 25.0% |
| AAAAGTAAAACCCCCTTAAA+GGG | - | chr4.4:87786615-87786634 | None:intergenic | 30.0% | |
| AACTAATGGAGATGCATTAT+CGG | - | chr4.4:87787209-87787228 | None:intergenic | 30.0% | |
| AAGAAATCAGACACAACTAA+TGG | - | chr4.4:87787223-87787242 | None:intergenic | 30.0% | |
| AATCACACTAACAAGAAACT+AGG | - | chr4.4:87786008-87786027 | None:intergenic | 30.0% | |
| AATCGCAAATTATATAGCTG+GGG | - | chr4.4:87786225-87786244 | None:intergenic | 30.0% | |
| ACAATGTAACTACTACATTG+TGG | - | chr4.4:87788180-87788199 | None:intergenic | 30.0% | |
| ACAGTGAAAACTGAAATTCT+TGG | + | chr4.4:87786805-87786824 | MS.gene33344:intron | 30.0% | |
| ATCACACTAACAAGAAACTA+GGG | - | chr4.4:87786007-87786026 | None:intergenic | 30.0% | |
| CCATAAAATGGAATTCAAAC+AGG | - | chr4.4:87785224-87785243 | None:intergenic | 30.0% | |
| CCATAGAAAGAAAACTTGAA+TGG | - | chr4.4:87787420-87787439 | None:intergenic | 30.0% | |
| CTACAATATTGGATTCTCAT+TGG | - | chr4.4:87787100-87787119 | None:intergenic | 30.0% | |
| CTAGTAACTATTGTAAATCC+TGG | + | chr4.4:87787324-87787343 | MS.gene33344:CDS | 30.0% | |
| CTCAAAACTCTTTGTATAAG+CGG | - | chr4.4:87785160-87785179 | None:intergenic | 30.0% | |
| GAAAATCTTAAAAGCTAACC+AGG | - | chr4.4:87785188-87785207 | None:intergenic | 30.0% | |
| GAAATTATTGAAGCACAGAT+TGG | - | chr4.4:87788369-87788388 | None:intergenic | 30.0% | |
| GTTCTTTATTCTGTCATAAC+AGG | + | chr4.4:87786248-87786267 | MS.gene33344:intron | 30.0% | |
| TAAAAGTAAAACCCCCTTAA+AGG | - | chr4.4:87786616-87786635 | None:intergenic | 30.0% | |
| TAAAGGAATTTCCATTAGGA+TGG | - | chr4.4:87787618-87787637 | None:intergenic | 30.0% | |
| TAAGAAAGGTTTGGAAGAAT+TGG | + | chr4.4:87788713-87788732 | MS.gene33344:CDS | 30.0% | |
| TAAGAACAGACAAATTGTCT+TGG | + | chr4.4:87788458-87788477 | MS.gene33344:CDS | 30.0% | |
| TATCACAAGATGAAGTATGA+TGG | - | chr4.4:87786883-87786902 | None:intergenic | 30.0% | |
| TTACCATAACGACTAATAGA+AGG | - | chr4.4:87785688-87785707 | None:intergenic | 30.0% | |
| TTATGGAAATCTTGCAAAGA+GGG | + | chr4.4:87784458-87784477 | MS.gene33344:CDS | 30.0% | |
| TTATTGTCCTATATGTATGC+AGG | + | chr4.4:87787890-87787909 | MS.gene33344:intron | 30.0% | |
| TTGAGATTGAAGCCATAAAA+TGG | - | chr4.4:87785236-87785255 | None:intergenic | 30.0% | |
| ! | AAGAATTTCAGTTTTCACTG+TGG | - | chr4.4:87786806-87786825 | None:intergenic | 30.0% |
| ! | ATTTTTGTGTTTTCAGATGC+AGG | + | chr4.4:87784603-87784622 | MS.gene33344:intron | 30.0% |
| ! | CCTGTTTGAATTCCATTTTA+TGG | + | chr4.4:87785221-87785240 | MS.gene33344:intron | 30.0% |
| ! | GATGGATTCGAAATACAAAA+TGG | - | chr4.4:87786865-87786884 | None:intergenic | 30.0% |
| ! | GTGGAGAAGATGAAATATTT+TGG | - | chr4.4:87788161-87788180 | None:intergenic | 30.0% |
| ! | TAAAGTACCTGCATACATAT+AGG | - | chr4.4:87787900-87787919 | None:intergenic | 30.0% |
| ! | TTACAATAGTTACTAGCTTC+GGG | - | chr4.4:87787320-87787339 | None:intergenic | 30.0% |
| ! | TTTGTGTGTGTTTTCAATGT+TGG | + | chr4.4:87784725-87784744 | MS.gene33344:intron | 30.0% |
| !! | AGATGAAATATTTTGGAGGA+TGG | - | chr4.4:87788154-87788173 | None:intergenic | 30.0% |
| !! | ATGAAATATTTTGGAGGATG+GGG | - | chr4.4:87788152-87788171 | None:intergenic | 30.0% |
| !! | CCATTCAAGTTTTCTTTCTA+TGG | + | chr4.4:87787417-87787436 | MS.gene33344:intron | 30.0% |
| !! | GAGAAGATGAAATATTTTGG+AGG | - | chr4.4:87788158-87788177 | None:intergenic | 30.0% |
| !! | GATGAAATATTTTGGAGGAT+GGG | - | chr4.4:87788153-87788172 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | - | chr4.4:87785895-87785914 | None:intergenic | 30.0% |
| !! | TTTTCTTTCTCGAAAGCATA+TGG | + | chr4.4:87787973-87787992 | MS.gene33344:CDS | 30.0% |
| AAGGACTATGCAACATAACA+AGG | - | chr4.4:87787690-87787709 | None:intergenic | 35.0% | |
| AATCTTAGAATCTCGTTTGG+AGG | + | chr4.4:87788651-87788670 | MS.gene33344:CDS | 35.0% | |
| AGAAACTTCTTTACGACCAT+TGG | + | chr4.4:87786542-87786561 | MS.gene33344:intron | 35.0% | |
| AGAAAGGCTTAAGAAAGGTT+TGG | + | chr4.4:87788704-87788723 | MS.gene33344:CDS | 35.0% | |
| AGAAGGAGCTATATACCTTT+GGG | + | chr4.4:87788521-87788540 | MS.gene33344:CDS | 35.0% | |
| AGCTTCAACAAGATTACAGA+CGG | + | chr4.4:87785109-87785128 | MS.gene33344:intron | 35.0% | |
| AGTTCTTACTCTATGTGATG+CGG | + | chr4.4:87786372-87786391 | MS.gene33344:CDS | 35.0% | |
| ATCGCAAATTATATAGCTGG+GGG | - | chr4.4:87786224-87786243 | None:intergenic | 35.0% | |
| CTTATGGAAATCTTGCAAAG+AGG | + | chr4.4:87784457-87784476 | MS.gene33344:CDS | 35.0% | |
| GGAAATCTTAGAATCTCGTT+TGG | + | chr4.4:87788648-87788667 | MS.gene33344:CDS | 35.0% | |
| GGCAAACATTTCATGTAGTA+AGG | - | chr4.4:87785413-87785432 | None:intergenic | 35.0% | |
| GGCATTACCAATATACTAGT+TGG | + | chr4.4:87786457-87786476 | MS.gene33344:CDS | 35.0% | |
| GTAAGTCTTTACCATCCTAA+TGG | + | chr4.4:87787604-87787623 | MS.gene33344:intron | 35.0% | |
| TGAGATGCCTATTATGGTTA+AGG | + | chr4.4:87784491-87784510 | MS.gene33344:CDS | 35.0% | |
| TGTGTTAGTAAGTGGATGTT+TGG | + | chr4.4:87785022-87785041 | MS.gene33344:intron | 35.0% | |
| TTGAGCGAACACAAATCTTA+AGG | - | chr4.4:87786106-87786125 | None:intergenic | 35.0% | |
| TTTCTAAATATCTGCAGTGC+AGG | + | chr4.4:87786336-87786355 | MS.gene33344:intron | 35.0% | |
| ! | AGAGCTCACCTTTTCAATTT+TGG | - | chr4.4:87785446-87785465 | None:intergenic | 35.0% |
| ! | AGTCGTTATGGTAATGATGA+AGG | + | chr4.4:87785694-87785713 | MS.gene33344:CDS | 35.0% |
| ! | CTGTTGTTTGTGTTAGTAAG+TGG | + | chr4.4:87785014-87785033 | MS.gene33344:intron | 35.0% |
| ! | GAGCTCACCTTTTCAATTTT+GGG | - | chr4.4:87785445-87785464 | None:intergenic | 35.0% |
| ! | TAAGTGGATGTTTGGAATAG+TGG | + | chr4.4:87785030-87785049 | MS.gene33344:intron | 35.0% |
| ! | TCGAAAGCATATGGAATGAT+GGG | + | chr4.4:87787982-87788001 | MS.gene33344:CDS | 35.0% |
| ! | TGATTTGAAACACACTTGTG+TGG | + | chr4.4:87787927-87787946 | MS.gene33344:CDS | 35.0% |
| ! | TTAAGATTTTCGTCGTACGT+GGG | + | chr4.4:87785197-87785216 | MS.gene33344:intron | 35.0% |
| !! | ACAAAACAAGCATTGGAAAC+AGG | - | chr4.4:87784690-87784709 | None:intergenic | 35.0% |
| !! | CTGGTTGGAAAAAGTGTTAT+CGG | + | chr4.4:87787281-87787300 | MS.gene33344:CDS | 35.0% |
| !! | TATTGGTAATGCCAGTCATT+TGG | - | chr4.4:87786450-87786469 | None:intergenic | 35.0% |
| !! | TCTTGATTTTTCAGACTGGT+TGG | + | chr4.4:87787266-87787285 | MS.gene33344:intron | 35.0% |
| !! | TTTAAGATTTTCGTCGTACG+TGG | + | chr4.4:87785196-87785215 | MS.gene33344:intron | 35.0% |
| !!! | ACTTTTTTCCAAAATCGCAG+TGG | - | chr4.4:87785080-87785099 | None:intergenic | 35.0% |
| ACCAATATACTAGTTGGTCC+CGG | + | chr4.4:87786463-87786482 | MS.gene33344:CDS | 40.0% | |
| AGAATTGGTTGCACATGGTT+TGG | + | chr4.4:87788728-87788747 | MS.gene33344:CDS | 40.0% | |
| AGCTAAGAATGCTGTGTCTT+TGG | + | chr4.4:87784639-87784658 | MS.gene33344:CDS | 40.0% | |
| AGTGTGTAGTAGACGAGAAA+AGG | + | chr4.4:87787030-87787049 | MS.gene33344:intron | 40.0% | |
| ATGATTTCGAAGTTGTTCGC+TGG | + | chr4.4:87788571-87788590 | MS.gene33344:CDS | 40.0% | |
| CACAGATTGGAATGTTGTCT+TGG | - | chr4.4:87788356-87788375 | None:intergenic | 40.0% | |
| CAGAGCAGCATTAGTGAAAA+AGG | + | chr4.4:87785729-87785748 | MS.gene33344:CDS | 40.0% | |
| CATTCCAGAGTCTCTTCTAA+AGG | + | chr4.4:87787365-87787384 | MS.gene33344:CDS | 40.0% | |
| CTCGGAGAAGGTTCTATTAA+AGG | + | chr4.4:87788495-87788514 | MS.gene33344:CDS | 40.0% | |
| CTTAGAATTGGGACCTGAAT+GGG | + | chr4.4:87788410-87788429 | MS.gene33344:CDS | 40.0% | |
| CTTTGTATAAGCGGTGAGTT+TGG | - | chr4.4:87785151-87785170 | None:intergenic | 40.0% | |
| GAAACACTTTATCCAGATGC+AGG | + | chr4.4:87786493-87786512 | MS.gene33344:CDS | 40.0% | |
| GAACAGACAAATTGTCTTGG+AGG | + | chr4.4:87788461-87788480 | MS.gene33344:CDS | 40.0% | |
| GAGAAGGAGCTATATACCTT+TGG | + | chr4.4:87788520-87788539 | MS.gene33344:CDS | 40.0% | |
| GAGCCTTCTATTAGTCGTTA+TGG | + | chr4.4:87785682-87785701 | MS.gene33344:CDS | 40.0% | |
| GCACTCTACTCCTTAGAATT+GGG | + | chr4.4:87788399-87788418 | MS.gene33344:CDS | 40.0% | |
| GGAAACTGAGATGCCTATTA+TGG | + | chr4.4:87784485-87784504 | MS.gene33344:CDS | 40.0% | |
| GGAGAAGGTTCTATTAAAGG+AGG | + | chr4.4:87788498-87788517 | MS.gene33344:CDS | 40.0% | |
| GGTTCTATTAAAGGAGGAGA+AGG | + | chr4.4:87788504-87788523 | MS.gene33344:CDS | 40.0% | |
| GTGTGTAGTAGACGAGAAAA+GGG | + | chr4.4:87787031-87787050 | MS.gene33344:intron | 40.0% | |
| GTTCTTACTCTATGTGATGC+GGG | + | chr4.4:87786373-87786392 | MS.gene33344:CDS | 40.0% | |
| TACATGTCCTTCCAAATGAC+TGG | + | chr4.4:87786436-87786455 | MS.gene33344:CDS | 40.0% | |
| TGCACTCTACTCCTTAGAAT+TGG | + | chr4.4:87788398-87788417 | MS.gene33344:CDS | 40.0% | |
| TGTGTAGTAGACGAGAAAAG+GGG | + | chr4.4:87787032-87787051 | MS.gene33344:intron | 40.0% | |
| TTCTTACTCTATGTGATGCG+GGG | + | chr4.4:87786374-87786393 | MS.gene33344:CDS | 40.0% | |
| TTGAAACACACTTGTGTGGA+AGG | + | chr4.4:87787931-87787950 | MS.gene33344:CDS | 40.0% | |
| TTGGAAGAATTGGTTGCACA+TGG | + | chr4.4:87788723-87788742 | MS.gene33344:CDS | 40.0% | |
| TTTGCACAAATCCTCGGTTA+TGG | + | chr4.4:87786169-87786188 | MS.gene33344:CDS | 40.0% | |
| ! | AAGCATATGGAATGATGGGA+TGG | + | chr4.4:87787986-87788005 | MS.gene33344:CDS | 40.0% |
| ! | ACCTTATCCAAAGCTTGCTT+TGG | - | chr4.4:87785646-87785665 | None:intergenic | 40.0% |
| ! | ACTTATAGGGAAGTACGACT+TGG | + | chr4.4:87786034-87786053 | MS.gene33344:intron | 40.0% |
| ! | AGCTTGGTTGTTGTTGTTGT+TGG | + | chr4.4:87784905-87784924 | MS.gene33344:intron | 40.0% |
| ! | ATAAAGTGTTTCCGGGTTAC+CGG | - | chr4.4:87786485-87786504 | None:intergenic | 40.0% |
| ! | ATGGGTTGCATTCATGAATG+AGG | + | chr4.4:87787735-87787754 | MS.gene33344:intron | 40.0% |
| ! | ATTCTAAGGAGTAGAGTGCA+AGG | - | chr4.4:87788398-87788417 | None:intergenic | 40.0% |
| ! | CACAGTTGATTGCTCACTTT+TGG | + | chr4.4:87787796-87787815 | MS.gene33344:intron | 40.0% |
| ! | CATCTGGATAAAGTGTTTCC+GGG | - | chr4.4:87786492-87786511 | None:intergenic | 40.0% |
| ! | CTCGAAAGCATATGGAATGA+TGG | + | chr4.4:87787981-87788000 | MS.gene33344:CDS | 40.0% |
| ! | CTTATAGGGAAGTACGACTT+GGG | + | chr4.4:87786035-87786054 | MS.gene33344:intron | 40.0% |
| ! | GATTGGTGATCTGGAATTTG+AGG | + | chr4.4:87784576-87784595 | MS.gene33344:intron | 40.0% |
| ! | GCATCTGGATAAAGTGTTTC+CGG | - | chr4.4:87786493-87786512 | None:intergenic | 40.0% |
| ! | GTAAGGAGCATACATAACCA+CGG | - | chr4.4:87786404-87786423 | None:intergenic | 40.0% |
| ! | GTCTTGGACTTTGAGAAGTT+GGG | - | chr4.4:87788340-87788359 | None:intergenic | 40.0% |
| ! | GTGTGTGTGTGTGTGTTTTA+TGG | + | chr4.4:87784949-87784968 | MS.gene33344:intron | 40.0% |
| ! | GTTTGGAATAGTGGTGAGAT+TGG | + | chr4.4:87785039-87785058 | MS.gene33344:intron | 40.0% |
| ! | TGTCTTGGACTTTGAGAAGT+TGG | - | chr4.4:87788341-87788360 | None:intergenic | 40.0% |
| ! | TTATCCAAAGCTTGCTTTGG+AGG | - | chr4.4:87785643-87785662 | None:intergenic | 40.0% |
| ! | TTTCAGTTTTCACTGTGGCA+AGG | - | chr4.4:87786801-87786820 | None:intergenic | 40.0% |
| !! | AATATTTTGGAGGATGGGGA+AGG | - | chr4.4:87788148-87788167 | None:intergenic | 40.0% |
| !! | ATATTTTGGAGGATGGGGAA+GGG | - | chr4.4:87788147-87788166 | None:intergenic | 40.0% |
| !! | CATACCCTTCTGAAGTAGAA+GGG | + | chr4.4:87788307-87788326 | MS.gene33344:CDS | 40.0% |
| !! | GAGTATTTGGATTGGTGATC+TGG | + | chr4.4:87784567-87784586 | MS.gene33344:intron | 40.0% |
| !! | TAGAAGAGACTCTGGAATGT+AGG | - | chr4.4:87787364-87787383 | None:intergenic | 40.0% |
| !! | TCCAAAGCAAGCTTTGGATA+AGG | + | chr4.4:87785642-87785661 | MS.gene33344:CDS | 40.0% |
| !!! | AAAGAGTTTTGAGAGAAGCC+TGG | + | chr4.4:87785167-87785186 | MS.gene33344:intron | 40.0% |
| !!! | TTTTTTCTTTCTGTAGGGGG+TGG | + | chr4.4:87785606-87785625 | MS.gene33344:intron | 40.0% |
| AAATCTTGCAAAGAGGGCTG+TGG | + | chr4.4:87784464-87784483 | MS.gene33344:CDS | 45.0% | |
| AACCTTCTCCGAGAGAAGAA+AGG | - | chr4.4:87788488-87788507 | None:intergenic | 45.0% | |
| AACTAGATCCTCTTGCAGTC+AGG | + | chr4.4:87785333-87785352 | MS.gene33344:intron | 45.0% | |
| ACCGGGACCAACTAGTATAT+TGG | - | chr4.4:87786467-87786486 | None:intergenic | 45.0% | |
| ACCTTCTCCGAGAGAAGAAA+GGG | - | chr4.4:87788487-87788506 | None:intergenic | 45.0% | |
| ACTAGATCCTCTTGCAGTCA+GGG | + | chr4.4:87785334-87785353 | MS.gene33344:intron | 45.0% | |
| ATTGATCACCTGATTGGCAC+CGG | - | chr4.4:87786201-87786220 | None:intergenic | 45.0% | |
| ATTGTAGAGCAGCAGCAGAA+AGG | + | chr4.4:87788688-87788707 | MS.gene33344:CDS | 45.0% | |
| CAAGAAACTAGGGCTCTGTT+TGG | - | chr4.4:87785997-87786016 | None:intergenic | 45.0% | |
| CAAGCCCTTCTACTTCAGAA+GGG | - | chr4.4:87788314-87788333 | None:intergenic | 45.0% | |
| CCATTCAGGTCCCAATTCTA+AGG | - | chr4.4:87788412-87788431 | None:intergenic | 45.0% | |
| CCTTAGAATTGGGACCTGAA+TGG | + | chr4.4:87788409-87788428 | MS.gene33344:CDS | 45.0% | |
| CGGTGAGTTTGGCAAAATCA+CGG | - | chr4.4:87785140-87785159 | None:intergenic | 45.0% | |
| CTTTGGGTGAAGATTCCAAG+CGG | + | chr4.4:87788537-87788556 | MS.gene33344:CDS | 45.0% | |
| GCAATGACTTTACCTGCATC+TGG | - | chr4.4:87786508-87786527 | None:intergenic | 45.0% | |
| GCAGCAGAAAGGCTTAAGAA+AGG | + | chr4.4:87788699-87788718 | MS.gene33344:CDS | 45.0% | |
| GGTAATGCCAGTCATTTGGA+AGG | - | chr4.4:87786446-87786465 | None:intergenic | 45.0% | |
| GTAAATCCTGGCAATCCAAC+TGG | + | chr4.4:87787336-87787355 | MS.gene33344:CDS | 45.0% | |
| TCTTACTCTATGTGATGCGG+GGG | + | chr4.4:87786375-87786394 | MS.gene33344:CDS | 45.0% | |
| TGAGTTTGGCAAAATCACGG+TGG | - | chr4.4:87785137-87785156 | None:intergenic | 45.0% | |
| TGGAATAGTGGTGAGATTGG+AGG | + | chr4.4:87785042-87785061 | MS.gene33344:intron | 45.0% | |
| TGGTGAGATTGGAGGAATCA+CGG | + | chr4.4:87785050-87785069 | MS.gene33344:intron | 45.0% | |
| TTCTGTAGGGGGTGGTTTAT+TGG | + | chr4.4:87785614-87785633 | MS.gene33344:intron | 45.0% | |
| ! | ACTAATGCTGCTCTGAGTTC+AGG | - | chr4.4:87785724-87785743 | None:intergenic | 45.0% |
| ! | ATAGTTACTAGCTTCGGGAC+AGG | - | chr4.4:87787315-87787334 | None:intergenic | 45.0% |
| ! | GAGACCTTTAGAAGAGACTC+TGG | - | chr4.4:87787372-87787391 | None:intergenic | 45.0% |
| ! | TAAAGTGTTTCCGGGTTACC+GGG | - | chr4.4:87786484-87786503 | None:intergenic | 45.0% |
| ! | TCCTCTGGCCGATTTAGAAA+AGG | - | chr4.4:87787529-87787548 | None:intergenic | 45.0% |
| ! | TCCTTTTCTAAATCGGCCAG+AGG | + | chr4.4:87787525-87787544 | MS.gene33344:intron | 45.0% |
| ! | TCTGGAATGTAGGTTCCAGT+TGG | - | chr4.4:87787354-87787373 | None:intergenic | 45.0% |
| ! | TTGTTCGCTGGCTAGCTAAT+AGG | + | chr4.4:87788583-87788602 | MS.gene33344:CDS | 45.0% |
| !! | GCATACCCTTCTGAAGTAGA+AGG | + | chr4.4:87788306-87788325 | MS.gene33344:CDS | 45.0% |
| ACTCGTTCGGTAACCCATTC+AGG | - | chr4.4:87788426-87788445 | None:intergenic | 50.0% | |
| AGGATGGGGAAGGGAGAAAA+GGG | - | chr4.4:87788138-87788157 | None:intergenic | 50.0% | |
| CAGATGCAGGAATTGCTACG+AGG | + | chr4.4:87784616-87784635 | MS.gene33344:intron | 50.0% | |
| CCAAGCCCTTCTACTTCAGA+AGG | - | chr4.4:87788315-87788334 | None:intergenic | 50.0% | |
| CGCACAGATTTGCAATCCTC+TGG | - | chr4.4:87787544-87787563 | None:intergenic | 50.0% | |
| CGCTTGGAATCTTCACCCAA+AGG | - | chr4.4:87788539-87788558 | None:intergenic | 50.0% | |
| CTAGATCCTCTTGCAGTCAG+GGG | + | chr4.4:87785335-87785354 | MS.gene33344:intron | 50.0% | |
| GCAAATCTGTGCGAGAAAGC+TGG | + | chr4.4:87787551-87787570 | MS.gene33344:CDS | 50.0% | |
| GCAACCTCCAAAGCAAGCTT+TGG | + | chr4.4:87785636-87785655 | MS.gene33344:CDS | 50.0% | |
| GTGAAGATTCCAAGCGGACA+TGG | + | chr4.4:87788543-87788562 | MS.gene33344:CDS | 50.0% | |
| TAGGTTCCAGTTGGATTGCC+AGG | - | chr4.4:87787345-87787364 | None:intergenic | 50.0% | |
| TCATCGTAACCATGTCCGCT+TGG | - | chr4.4:87788555-87788574 | None:intergenic | 50.0% | |
| TCCTCGGTTATGGTTACAGC+CGG | + | chr4.4:87786179-87786198 | MS.gene33344:CDS | 50.0% | |
| TGGGGGATTGATCACCTGAT+TGG | - | chr4.4:87786207-87786226 | None:intergenic | 50.0% | |
| TTGGAGGCCCTTTCTTCTCT+CGG | + | chr4.4:87788477-87788496 | MS.gene33344:CDS | 50.0% | |
| ! | GAATGCTGTGTCTTTGGCTC+AGG | + | chr4.4:87784645-87784664 | MS.gene33344:CDS | 50.0% |
| ! | GGAATGATGGGATGGCGAAT+TGG | + | chr4.4:87787994-87788013 | MS.gene33344:CDS | 50.0% |
| !! | CCTTCTGAAGTAGAAGGGCT+TGG | + | chr4.4:87788312-87788331 | MS.gene33344:CDS | 50.0% |
| ACCGGCTGTAACCATAACCG+AGG | - | chr4.4:87786183-87786202 | None:intergenic | 55.0% | |
| ACTAGTTGGTCCCGGTAACC+CGG | + | chr4.4:87786471-87786490 | MS.gene33344:CDS | 55.0% | |
| GAGGATGGGGAAGGGAGAAA+AGG | - | chr4.4:87788139-87788158 | None:intergenic | 55.0% | |
| GCCCTTTCTTCTCTCGGAGA+AGG | + | chr4.4:87788483-87788502 | MS.gene33344:CDS | 55.0% | |
| GGATGGGGAAGGGAGAAAAG+GGG | - | chr4.4:87788137-87788156 | None:intergenic | 55.0% | |
| TGTGATCCCCTGACTGCAAG+AGG | - | chr4.4:87785344-87785363 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACTGCGATTT+TGG | + | chr4.4:87785069-87785088 | MS.gene33344:intron | 55.0% |
| ! | CACGGGATTGCTGTTATCCC+TGG | + | chr4.4:87788606-87788625 | MS.gene33344:CDS | 55.0% |
| ! | CGCTGGCTAGCTAATAGGCA+CGG | + | chr4.4:87788588-87788607 | MS.gene33344:CDS | 55.0% |
| ! | GCTGGCTAGCTAATAGGCAC+GGG | + | chr4.4:87788589-87788608 | MS.gene33344:CDS | 55.0% |
| ! | GTTATCCCTGGAAGTGCGTG+CGG | + | chr4.4:87788618-87788637 | MS.gene33344:CDS | 55.0% |
| ! | TGTGCGAGAAAGCTGGCTCT+TGG | + | chr4.4:87787558-87787577 | MS.gene33344:CDS | 55.0% |
| !! | AGCTGGCTCTTGGCTTGTTG+TGG | + | chr4.4:87787568-87787587 | MS.gene33344:CDS | 55.0% |
| ATGTGATGCGGGGGATTCCG+TGG | + | chr4.4:87786384-87786403 | MS.gene33344:CDS | 60.0% | |
| GGGAAGGGAGAAAAGGGGTG+AGG | - | chr4.4:87788132-87788151 | None:intergenic | 60.0% | |
| ! | GGTTACAGCCGGTGCCAATC+AGG | + | chr4.4:87786190-87786209 | MS.gene33344:CDS | 60.0% |
| CAGCACCGCACGCACTTCCA+GGG | - | chr4.4:87788626-87788645 | None:intergenic | 65.0% | |
| GCAGCACCGCACGCACTTCC+AGG | - | chr4.4:87788627-87788646 | None:intergenic | 70.0% | |
| !! | GGAAGTGCGTGCGGTGCTGC+TGG | + | chr4.4:87788627-87788646 | MS.gene33344:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 87784450 | 87788761 | 87784450 | ID=MS.gene33344 |
| chr4.4 | mRNA | 87784450 | 87788761 | 87784450 | ID=MS.gene33344.t1;Parent=MS.gene33344 |
| chr4.4 | exon | 87784450 | 87784512 | 87784450 | ID=MS.gene33344.t1.exon1;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87784450 | 87784512 | 87784450 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87784619 | 87784666 | 87784619 | ID=MS.gene33344.t1.exon2;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87784619 | 87784666 | 87784619 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87785622 | 87785750 | 87785622 | ID=MS.gene33344.t1.exon3;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87785622 | 87785750 | 87785622 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87786152 | 87786211 | 87786152 | ID=MS.gene33344.t1.exon4;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87786152 | 87786211 | 87786152 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87786358 | 87786514 | 87786358 | ID=MS.gene33344.t1.exon5;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87786358 | 87786514 | 87786358 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87787280 | 87787386 | 87787280 | ID=MS.gene33344.t1.exon6;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87787280 | 87787386 | 87787280 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87787545 | 87787603 | 87787545 | ID=MS.gene33344.t1.exon7;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87787545 | 87787603 | 87787545 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87787912 | 87788020 | 87787912 | ID=MS.gene33344.t1.exon8;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87787912 | 87788020 | 87787912 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| chr4.4 | exon | 87788303 | 87788761 | 87788303 | ID=MS.gene33344.t1.exon9;Parent=MS.gene33344.t1 |
| chr4.4 | CDS | 87788303 | 87788761 | 87788303 | ID=cds.MS.gene33344.t1;Parent=MS.gene33344.t1 |
| Gene Sequence |
| Protein sequence |
