Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33375.t1 | XP_003604452.3 | 94.9 | 350 | 17 | 1 | 1 | 349 | 1 | 350 | 1.60E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33375.t1 | A0A396HZ73 | 94.9 | 350 | 17 | 1 | 1 | 349 | 1 | 350 | 1.1e-150 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene33375 | 0.81412 | 1.81E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene33375 | 0.831588 | 1.53E-55 | -1.69E-46 |
| MS.gene05847 | MS.gene33375 | 0.815182 | 1.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33375.t1 | MTR_4g012540 | 93.438 | 320 | 20 | 1 | 31 | 349 | 1 | 320 | 0.0 | 582 |
| MS.gene33375.t1 | MTR_2g102030 | 50.329 | 304 | 134 | 6 | 4 | 297 | 1 | 297 | 7.64e-85 | 263 |
| MS.gene33375.t1 | MTR_8g103540 | 49.741 | 193 | 95 | 2 | 4 | 195 | 1 | 192 | 9.53e-53 | 184 |
| MS.gene33375.t1 | MTR_6g086635 | 42.478 | 226 | 120 | 2 | 4 | 228 | 1 | 217 | 1.89e-45 | 164 |
| MS.gene33375.t1 | MTR_8g074540 | 36.649 | 191 | 110 | 4 | 15 | 194 | 29 | 219 | 2.14e-30 | 120 |
| MS.gene33375.t1 | MTR_1g110690 | 30.653 | 199 | 127 | 4 | 13 | 200 | 13 | 211 | 1.32e-26 | 108 |
| MS.gene33375.t1 | MTR_6g091690 | 33.514 | 185 | 110 | 4 | 4 | 178 | 1 | 182 | 2.21e-25 | 107 |
| MS.gene33375.t1 | MTR_6g038150 | 32.979 | 188 | 115 | 4 | 15 | 191 | 15 | 202 | 2.27e-21 | 95.5 |
| MS.gene33375.t1 | MTR_4g038310 | 33.143 | 175 | 107 | 3 | 15 | 179 | 12 | 186 | 4.64e-21 | 94.4 |
| MS.gene33375.t1 | MTR_8g074540 | 36.806 | 144 | 80 | 4 | 62 | 194 | 2 | 145 | 1.59e-20 | 91.7 |
| MS.gene33375.t1 | MTR_2g090230 | 32.298 | 161 | 99 | 3 | 17 | 167 | 3 | 163 | 5.45e-19 | 88.6 |
| MS.gene33375.t1 | MTR_4g081350 | 31.285 | 179 | 111 | 3 | 4 | 173 | 1 | 176 | 1.22e-17 | 83.6 |
| MS.gene33375.t1 | MTR_4g081350 | 31.285 | 179 | 111 | 3 | 4 | 173 | 1 | 176 | 1.27e-17 | 83.6 |
| MS.gene33375.t1 | MTR_7g407010 | 26.286 | 175 | 117 | 3 | 8 | 171 | 3 | 176 | 1.38e-15 | 77.8 |
| MS.gene33375.t1 | MTR_6g091690 | 35.043 | 117 | 66 | 3 | 72 | 178 | 1 | 117 | 2.06e-14 | 75.1 |
| MS.gene33375.t1 | MTR_1g111210 | 24.074 | 162 | 112 | 3 | 21 | 171 | 22 | 183 | 4.04e-13 | 70.1 |
| MS.gene33375.t1 | MTR_2g090230 | 33.333 | 117 | 68 | 3 | 61 | 167 | 7 | 123 | 9.39e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33375.t1 | AT1G79910 | 34.211 | 380 | 212 | 7 | 4 | 346 | 1 | 379 | 1.06e-68 | 220 |
| MS.gene33375.t1 | AT1G52315 | 46.774 | 186 | 97 | 1 | 4 | 187 | 1 | 186 | 3.44e-53 | 179 |
| MS.gene33375.t1 | AT1G79910 | 31.366 | 322 | 183 | 7 | 62 | 346 | 4 | 324 | 1.74e-44 | 155 |
| MS.gene33375.t1 | AT1G79910 | 31.464 | 321 | 182 | 7 | 63 | 346 | 46 | 365 | 6.91e-44 | 155 |
| MS.gene33375.t1 | AT4G32350 | 42.473 | 186 | 106 | 1 | 4 | 188 | 1 | 186 | 1.11e-42 | 157 |
| MS.gene33375.t1 | AT4G32350 | 42.473 | 186 | 106 | 1 | 4 | 188 | 1 | 186 | 1.11e-42 | 157 |
| MS.gene33375.t1 | AT1G52315 | 50.000 | 120 | 58 | 1 | 70 | 187 | 17 | 136 | 4.27e-36 | 132 |
| MS.gene33375.t1 | AT4G35730 | 38.235 | 170 | 95 | 3 | 15 | 174 | 29 | 198 | 3.51e-29 | 117 |
| MS.gene33375.t1 | AT1G34220 | 34.694 | 196 | 117 | 4 | 15 | 199 | 15 | 210 | 2.23e-27 | 113 |
| MS.gene33375.t1 | AT1G25420 | 31.771 | 192 | 120 | 4 | 13 | 193 | 13 | 204 | 2.00e-24 | 102 |
| MS.gene33375.t1 | AT2G14830 | 33.871 | 186 | 113 | 3 | 4 | 179 | 1 | 186 | 8.86e-24 | 101 |
| MS.gene33375.t1 | AT4G32350 | 47.959 | 98 | 50 | 1 | 92 | 188 | 1 | 98 | 3.49e-23 | 101 |
| MS.gene33375.t1 | AT1G34220 | 30.088 | 226 | 117 | 5 | 15 | 199 | 15 | 240 | 3.57e-22 | 98.2 |
| MS.gene33375.t1 | AT1G25420 | 32.203 | 177 | 109 | 4 | 28 | 193 | 1 | 177 | 7.66e-22 | 94.4 |
| MS.gene33375.t1 | AT2G19710 | 29.787 | 188 | 119 | 4 | 1 | 178 | 1 | 185 | 2.11e-20 | 93.2 |
| MS.gene33375.t1 | AT4G29440 | 29.255 | 188 | 120 | 4 | 1 | 178 | 1 | 185 | 5.79e-20 | 92.0 |
| MS.gene33375.t1 | AT4G29440 | 31.013 | 158 | 98 | 4 | 31 | 178 | 1 | 157 | 3.90e-17 | 83.2 |
| MS.gene33375.t1 | AT1G25420 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 3.12e-16 | 77.8 |
| MS.gene33375.t1 | AT1G25420 | 34.091 | 132 | 76 | 4 | 73 | 193 | 5 | 136 | 3.12e-16 | 77.8 |
| MS.gene33375.t1 | AT1G13340 | 27.607 | 163 | 108 | 2 | 19 | 171 | 20 | 182 | 3.36e-16 | 79.7 |
Find 52 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCATTGAAAAGTTTAT+TGG | 0.167219 | 4.2:+87948241 | MS.gene33375:CDS |
| CTTATCTTCATTTCTCTTGT+AGG | 0.244844 | 4.2:-87948704 | None:intergenic |
| ATGATTATGATGCATATAAA+AGG | 0.245526 | 4.2:+87947897 | MS.gene33375:CDS |
| ATGACATTGCTGAGCTTCTT+AGG | 0.249047 | 4.2:+87947867 | MS.gene33375:CDS |
| TTTACCTCTTTATTTATATA+TGG | 0.273867 | 4.2:-87948539 | None:intergenic |
| AGCCTAAGTTCTATTCAAAA+TGG | 0.300907 | 4.2:+87947639 | MS.gene33375:CDS |
| GTTCTAAGGTCACGCAATTC+TGG | 0.310148 | 4.2:-87948482 | None:intergenic |
| CATCATCACTACTACTATAT+TGG | 0.314596 | 4.2:-87949829 | None:intergenic |
| AAAGCTAGTTCAAGTTCATT+TGG | 0.341711 | 4.2:+87949896 | MS.gene33375:CDS |
| ATTCTATGATTCAAATGTTT+CGG | 0.348367 | 4.2:+87947606 | None:intergenic |
| CCTAAGTTTCTATGATCTTC+CGG | 0.349313 | 4.2:-87950212 | None:intergenic |
| TTTCTGTAAACAAAGTTCTA+AGG | 0.349616 | 4.2:-87948496 | None:intergenic |
| ATAGCTTCTTTGCATTCCTC+AGG | 0.361399 | 4.2:-87948419 | None:intergenic |
| CAATAATAGGGGACACAATC+TGG | 0.389420 | 4.2:+87949737 | MS.gene33375:intron |
| TCATAATCAGGTCGAGTAGA+AGG | 0.392876 | 4.2:-87950160 | None:intergenic |
| GGGACACAATCTGGTGGAAC+TGG | 0.393720 | 4.2:+87949746 | MS.gene33375:CDS |
| GACTGAAGGGCTTCTGTTTG+AGG | 0.394923 | 4.2:+87948198 | MS.gene33375:intron |
| GCAATAAAATCATCATAATC+AGG | 0.413576 | 4.2:-87950172 | None:intergenic |
| CACAAGAGTTCTCTATAGAA+TGG | 0.414870 | 4.2:+87948744 | MS.gene33375:CDS |
| TTACTTACTTCATATAATGA+TGG | 0.428302 | 4.2:-87948803 | None:intergenic |
| GTTGAAACTTCATCATCAAA+AGG | 0.428329 | 4.2:+87950103 | MS.gene33375:CDS |
| GAAGTTTCAACTGATGTTGT+TGG | 0.468439 | 4.2:-87950091 | None:intergenic |
| CTACAAGAGAAATGAAGATA+AGG | 0.485405 | 4.2:+87948705 | MS.gene33375:CDS |
| TACTTACTTCATATAATGAT+GGG | 0.486277 | 4.2:-87948802 | None:intergenic |
| AAAAGGGTATGCACAAATGT+GGG | 0.502279 | 4.2:+87950120 | MS.gene33375:CDS |
| CTCTATAGAATGGGATGGGA+AGG | 0.509202 | 4.2:+87948754 | MS.gene33375:CDS |
| TTGAAACTTCATCATCAAAA+GGG | 0.517541 | 4.2:+87950104 | MS.gene33375:CDS |
| CAATCTGGTGGAACTGGAGG+AGG | 0.518100 | 4.2:+87949752 | MS.gene33375:CDS |
| ACAAGAGTTCTCTATAGAAT+GGG | 0.518976 | 4.2:+87948745 | MS.gene33375:CDS |
| TTGCATTTGAAGCAGACTGA+AGG | 0.522662 | 4.2:+87948184 | MS.gene33375:intron |
| TGAACCATATATAAATAAAG+AGG | 0.522792 | 4.2:+87948535 | MS.gene33375:CDS |
| TGATTATGATGCATATAAAA+GGG | 0.534162 | 4.2:+87947898 | MS.gene33375:CDS |
| CAAAAGGGTATGCACAAATG+TGG | 0.540716 | 4.2:+87950119 | MS.gene33375:CDS |
| TGCATTTGAAGCAGACTGAA+GGG | 0.541515 | 4.2:+87948185 | MS.gene33375:intron |
| GCTCGTCTTAAAGCTTTCAC+CGG | 0.545603 | 4.2:+87950193 | MS.gene33375:CDS |
| CACAAATGTGGGGTGGTGCA+TGG | 0.552893 | 4.2:+87950131 | MS.gene33375:CDS |
| TAGCTTCTTTGCATTCCTCA+GGG | 0.557331 | 4.2:-87948418 | None:intergenic |
| GAGTTCTCTATAGAATGGGA+TGG | 0.565030 | 4.2:+87948749 | MS.gene33375:CDS |
| GCTGCAGCATACATCAATGA+TGG | 0.570480 | 4.2:-87948443 | None:intergenic |
| CTATGATTCAAATGTTTCGG+TGG | 0.572455 | 4.2:+87947609 | None:intergenic |
| ACATCACCATCTCATCATCA+TGG | 0.573332 | 4.2:+87949869 | MS.gene33375:CDS |
| TTTCTTCCATGATGATGAGA+TGG | 0.575256 | 4.2:-87949875 | None:intergenic |
| ACACAATCTGGTGGAACTGG+AGG | 0.583170 | 4.2:+87949749 | MS.gene33375:CDS |
| ATTGCTGAGCTTCTTAGGAG+TGG | 0.588762 | 4.2:+87947872 | MS.gene33375:CDS |
| TTGAAGAGTTAGTTAAGCAG+AGG | 0.591111 | 4.2:+87948281 | MS.gene33375:CDS |
| AGTTCTCTATAGAATGGGAT+GGG | 0.599718 | 4.2:+87948750 | MS.gene33375:CDS |
| TAAGGTCACGCAATTCTGGT+AGG | 0.635354 | 4.2:-87948478 | None:intergenic |
| AAAGGGTATGCACAAATGTG+GGG | 0.675761 | 4.2:+87950121 | MS.gene33375:CDS |
| GGGTATGCACAAATGTGGGG+TGG | 0.692191 | 4.2:+87950124 | MS.gene33375:CDS |
| TAATAGGGGACACAATCTGG+TGG | 0.702753 | 4.2:+87949740 | MS.gene33375:intron |
| CTTATATAGTGAATGCCCTG+AGG | 0.705982 | 4.2:+87948403 | MS.gene33375:intron |
| ACATAAAGTGTATTAAGACA+CGG | 0.708826 | 4.2:+87947795 | MS.gene33375:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGTTGAAATATTT+CGG | + | chr4.2:87948992-87949011 | MS.gene33375:intron | 10.0% |
| !! | AGATTAACAAAATTATAAAA+TGG | + | chr4.2:87949163-87949182 | MS.gene33375:intron | 10.0% |
| !!! | CATATTTATTATTGTTTTTA+AGG | + | chr4.2:87948630-87948649 | MS.gene33375:intron | 10.0% |
| !! | GATATTTGATTAATTTCAAT+GGG | + | chr4.2:87949278-87949297 | MS.gene33375:intron | 15.0% |
| !! | TGATATTTGATTAATTTCAA+TGG | + | chr4.2:87949277-87949296 | MS.gene33375:intron | 15.0% |
| !!! | AATATATATTTTTACCCATT+TGG | + | chr4.2:87949521-87949540 | MS.gene33375:intron | 15.0% |
| !!! | ATATATATTTTTACCCATTT+GGG | + | chr4.2:87949522-87949541 | MS.gene33375:intron | 15.0% |
| !!! | GAAATATTTCAACATATTTT+TGG | - | chr4.2:87948993-87949012 | None:intergenic | 15.0% |
| !!! | GTTTATTCTAATTTATGTTT+TGG | + | chr4.2:87947741-87947760 | MS.gene33375:intron | 15.0% |
| !!! | TCTTTTGAATTTTTTTTACA+CGG | + | chr4.2:87947717-87947736 | MS.gene33375:intron | 15.0% |
| !!! | TTTACCTCTTTATTTATATA+TGG | - | chr4.2:87948542-87948561 | None:intergenic | 15.0% |
| !! | ATGATTATGATGCATATAAA+AGG | + | chr4.2:87947897-87947916 | MS.gene33375:CDS | 20.0% |
| !! | CTTTATAGGACTAATATAAT+TGG | - | chr4.2:87949207-87949226 | None:intergenic | 20.0% |
| !! | GAATTCATTGAAAAGTTTAT+TGG | + | chr4.2:87948241-87948260 | MS.gene33375:CDS | 20.0% |
| !! | GTATGTAAAAGAATCTTTAT+AGG | - | chr4.2:87949221-87949240 | None:intergenic | 20.0% |
| !! | TACTTACTTCATATAATGAT+GGG | - | chr4.2:87948805-87948824 | None:intergenic | 20.0% |
| !! | TACTTGTATGCAAAATTTAA+TGG | - | chr4.2:87947940-87947959 | None:intergenic | 20.0% |
| !! | TATAAAATGGTTCATGAAAT+TGG | + | chr4.2:87949176-87949195 | MS.gene33375:intron | 20.0% |
| !! | TGAACCATATATAAATAAAG+AGG | + | chr4.2:87948535-87948554 | MS.gene33375:CDS | 20.0% |
| !! | TGATTATGATGCATATAAAA+GGG | + | chr4.2:87947898-87947917 | MS.gene33375:CDS | 20.0% |
| !! | TTACATACTAATGTGATTAT+GGG | + | chr4.2:87949233-87949252 | MS.gene33375:intron | 20.0% |
| !! | TTACTTACTTCATATAATGA+TGG | - | chr4.2:87948806-87948825 | None:intergenic | 20.0% |
| !! | TTTACATACTAATGTGATTA+TGG | + | chr4.2:87949232-87949251 | MS.gene33375:intron | 20.0% |
| !!! | AAAATCACAATTTTAGTTAC+TGG | - | chr4.2:87947681-87947700 | None:intergenic | 20.0% |
| !!! | ACTTTGTTTACAGAAAAATA+TGG | + | chr4.2:87948503-87948522 | MS.gene33375:CDS | 20.0% |
| !!! | ATATTTTTGGATGTTTTATG+TGG | - | chr4.2:87948980-87948999 | None:intergenic | 20.0% |
| !!! | ATGTTGGATATTTTAAAAGT+TGG | - | chr4.2:87949346-87949365 | None:intergenic | 20.0% |
| !!! | TGTTGGATATTTTAAAAGTT+GGG | - | chr4.2:87949345-87949364 | None:intergenic | 20.0% |
| ! | ACATAAACTGACCAATAATA+GGG | + | chr4.2:87949725-87949744 | MS.gene33375:intron | 25.0% |
| ! | ACATAAAGTGTATTAAGACA+CGG | + | chr4.2:87947795-87947814 | MS.gene33375:CDS | 25.0% |
| ! | CCACAAAAAACTAATAACAA+AGG | + | chr4.2:87949998-87950017 | MS.gene33375:CDS | 25.0% |
| ! | GCAATAAAATCATCATAATC+AGG | - | chr4.2:87950175-87950194 | None:intergenic | 25.0% |
| ! | TACATAAACTGACCAATAAT+AGG | + | chr4.2:87949724-87949743 | MS.gene33375:intron | 25.0% |
| ! | TTGAAACTTCATCATCAAAA+GGG | + | chr4.2:87950104-87950123 | MS.gene33375:CDS | 25.0% |
| ! | TTTCTGTAAACAAAGTTCTA+AGG | - | chr4.2:87948499-87948518 | None:intergenic | 25.0% |
| !! | AGTTACCTTATTCACAATTT+TGG | + | chr4.2:87949316-87949335 | MS.gene33375:intron | 25.0% |
| !! | GAATCAATATTTTTCTCTAG+TGG | - | chr4.2:87950058-87950077 | None:intergenic | 25.0% |
| !! | TACCATTTTGAATAGAACTT+AGG | - | chr4.2:87947644-87947663 | None:intergenic | 25.0% |
| !!! | CCTTTGTTATTAGTTTTTTG+TGG | - | chr4.2:87950001-87950020 | None:intergenic | 25.0% |
| !!! | GAGAAAAATATTGATTCAAG+TGG | + | chr4.2:87950061-87950080 | MS.gene33375:CDS | 25.0% |
| !!! | TAGTCACAATGTTTTTTTGA+AGG | - | chr4.2:87948850-87948869 | None:intergenic | 25.0% |
| !!! | TATTAGTTTTTTGTGGTTTG+AGG | - | chr4.2:87949994-87950013 | None:intergenic | 25.0% |
| !!! | TTTTTTTGACTCTTCAATCA+AGG | - | chr4.2:87949133-87949152 | None:intergenic | 25.0% |
| ACAAGAGTTCTCTATAGAAT+GGG | + | chr4.2:87948745-87948764 | MS.gene33375:CDS | 30.0% | |
| ACTCTCAAACCAATATCATT+AGG | - | chr4.2:87949552-87949571 | None:intergenic | 30.0% | |
| AGCCTAAGTTCTATTCAAAA+TGG | + | chr4.2:87947639-87947658 | MS.gene33375:CDS | 30.0% | |
| ATAGAAGTGATTACATGTGA+TGG | + | chr4.2:87948067-87948086 | MS.gene33375:intron | 30.0% | |
| ATTTGATGCAAGAGATTGTT+TGG | - | chr4.2:87949477-87949496 | None:intergenic | 30.0% | |
| CATAAACTGACCAATAATAG+GGG | + | chr4.2:87949726-87949745 | MS.gene33375:intron | 30.0% | |
| CATCATCACTACTACTATAT+TGG | - | chr4.2:87949832-87949851 | None:intergenic | 30.0% | |
| CTACAAGAGAAATGAAGATA+AGG | + | chr4.2:87948705-87948724 | MS.gene33375:CDS | 30.0% | |
| CTTATCTTCATTTCTCTTGT+AGG | - | chr4.2:87948707-87948726 | None:intergenic | 30.0% | |
| GGAATTAGCAAAAAGGAATT+TGG | - | chr4.2:87949962-87949981 | None:intergenic | 30.0% | |
| GGAGGTTATTCATTTAGAAA+TGG | + | chr4.2:87949574-87949593 | MS.gene33375:intron | 30.0% | |
| GGATACCAAAATTGTGAATA+AGG | - | chr4.2:87949324-87949343 | None:intergenic | 30.0% | |
| GTTGAAACTTCATCATCAAA+AGG | + | chr4.2:87950103-87950122 | MS.gene33375:CDS | 30.0% | |
| TTTGATGCAAGAGATTGTTT+GGG | - | chr4.2:87949476-87949495 | None:intergenic | 30.0% | |
| ! | AAAGCTAGTTCAAGTTCATT+TGG | + | chr4.2:87949896-87949915 | MS.gene33375:CDS | 30.0% |
| ! | CTTTTCAATGAATTCATAGC+AGG | - | chr4.2:87948236-87948255 | None:intergenic | 30.0% |
| ! | TATGTGGTTTTTATGCAGTT+CGG | - | chr4.2:87948964-87948983 | None:intergenic | 30.0% |
| ! | TCATATGGTGGAAAAAGTAA+TGG | + | chr4.2:87949047-87949066 | MS.gene33375:intron | 30.0% |
| ! | TTCAGAATCTGATGTTTTGT+TGG | - | chr4.2:87950035-87950054 | None:intergenic | 30.0% |
| !! | AATGATATTGGTTTGAGAGT+TGG | + | chr4.2:87949552-87949571 | MS.gene33375:intron | 30.0% |
| !! | ATATTTTTACCCATTTGGGT+TGG | + | chr4.2:87949526-87949545 | MS.gene33375:intron | 30.0% |
| !! | ATGATATTGGTTTGAGAGTT+GGG | + | chr4.2:87949553-87949572 | MS.gene33375:intron | 30.0% |
| !!! | CGGATTTTAGAATCCAAATA+GGG | + | chr4.2:87949012-87949031 | MS.gene33375:intron | 30.0% |
| !!! | TCGGATTTTAGAATCCAAAT+AGG | + | chr4.2:87949011-87949030 | MS.gene33375:intron | 30.0% |
| !!! | TTTTTTGTGGTTTGAGGTAA+GGG | - | chr4.2:87949988-87950007 | None:intergenic | 30.0% |
| AAACTCAACCTCAAATGCAT+AGG | - | chr4.2:87949377-87949396 | None:intergenic | 35.0% | |
| AGTTCTCTATAGAATGGGAT+GGG | + | chr4.2:87948750-87948769 | MS.gene33375:CDS | 35.0% | |
| ATTGACACAAACGTCAAACA+CGG | + | chr4.2:87948003-87948022 | MS.gene33375:intron | 35.0% | |
| ATTGAGTGATTCACCTACTT+TGG | + | chr4.2:87949106-87949125 | MS.gene33375:intron | 35.0% | |
| CACAAGAGTTCTCTATAGAA+TGG | + | chr4.2:87948744-87948763 | MS.gene33375:CDS | 35.0% | |
| CTCAACTTCTCAACAAACTA+AGG | - | chr4.2:87948677-87948696 | None:intergenic | 35.0% | |
| GAAGTTTCAACTGATGTTGT+TGG | - | chr4.2:87950094-87950113 | None:intergenic | 35.0% | |
| TATATATATCCAAGCGAACG+AGG | + | chr4.2:87948874-87948893 | MS.gene33375:intron | 35.0% | |
| TTGAAGAGTTAGTTAAGCAG+AGG | + | chr4.2:87948281-87948300 | MS.gene33375:CDS | 35.0% | |
| TTGAGTATACTCTACAAGAG+TGG | - | chr4.2:87948574-87948593 | None:intergenic | 35.0% | |
| ! | AAAAGGGTATGCACAAATGT+GGG | + | chr4.2:87950120-87950139 | MS.gene33375:CDS | 35.0% |
| ! | GTGCTTTGTCTCATTTTGTT+TGG | - | chr4.2:87949810-87949829 | None:intergenic | 35.0% |
| ! | TTTCTTCCATGATGATGAGA+TGG | - | chr4.2:87949878-87949897 | None:intergenic | 35.0% |
| !! | TTTTTGTGGTTTGAGGTAAG+GGG | - | chr4.2:87949987-87950006 | None:intergenic | 35.0% |
| !!! | GTTTTTTGTGGTTTGAGGTA+AGG | - | chr4.2:87949989-87950008 | None:intergenic | 35.0% |
| ACATCACCATCTCATCATCA+TGG | + | chr4.2:87949869-87949888 | MS.gene33375:CDS | 40.0% | |
| ACTCTACAAGAGTGGATCAT+TGG | - | chr4.2:87948566-87948585 | None:intergenic | 40.0% | |
| ATAGCTTCTTTGCATTCCTC+AGG | - | chr4.2:87948422-87948441 | None:intergenic | 40.0% | |
| ATCATTAGGCCAACCCAAAT+GGG | - | chr4.2:87949538-87949557 | None:intergenic | 40.0% | |
| ATGACATTGCTGAGCTTCTT+AGG | + | chr4.2:87947867-87947886 | MS.gene33375:CDS | 40.0% | |
| CAATAATAGGGGACACAATC+TGG | + | chr4.2:87949737-87949756 | MS.gene33375:intron | 40.0% | |
| CAGATTGTGTCCCCTATTAT+TGG | - | chr4.2:87949739-87949758 | None:intergenic | 40.0% | |
| CTTATATAGTGAATGCCCTG+AGG | + | chr4.2:87948403-87948422 | MS.gene33375:intron | 40.0% | |
| CTTCAATCAAGGACCAAAGT+AGG | - | chr4.2:87949122-87949141 | None:intergenic | 40.0% | |
| GAGTTCTCTATAGAATGGGA+TGG | + | chr4.2:87948749-87948768 | MS.gene33375:CDS | 40.0% | |
| GTTCGGATTAAATCCGAACT+CGG | - | chr4.2:87948947-87948966 | None:intergenic | 40.0% | |
| TAGCTTCTTTGCATTCCTCA+GGG | - | chr4.2:87948421-87948440 | None:intergenic | 40.0% | |
| TATCATTAGGCCAACCCAAA+TGG | - | chr4.2:87949539-87949558 | None:intergenic | 40.0% | |
| TCATAATCAGGTCGAGTAGA+AGG | - | chr4.2:87950163-87950182 | None:intergenic | 40.0% | |
| TGCATAGGTGGAGAAAATGT+TGG | - | chr4.2:87949362-87949381 | None:intergenic | 40.0% | |
| TTTCTCCACCTATGCATTTG+AGG | + | chr4.2:87949366-87949385 | MS.gene33375:intron | 40.0% | |
| ! | AAAGGGTATGCACAAATGTG+GGG | + | chr4.2:87950121-87950140 | MS.gene33375:CDS | 40.0% |
| ! | CAAAAGGGTATGCACAAATG+TGG | + | chr4.2:87950119-87950138 | MS.gene33375:CDS | 40.0% |
| ! | TGCATTTGAAGCAGACTGAA+GGG | + | chr4.2:87948185-87948204 | MS.gene33375:intron | 40.0% |
| ! | TTGCATTTGAAGCAGACTGA+AGG | + | chr4.2:87948184-87948203 | MS.gene33375:intron | 40.0% |
| !! | ATATTGGTTTGAGAGTTGGG+AGG | + | chr4.2:87949556-87949575 | MS.gene33375:intron | 40.0% |
| !! | TACATGTGATGGTGTCATGT+CGG | + | chr4.2:87948078-87948097 | MS.gene33375:intron | 40.0% |
| !! | TTGGGTTGGCCTAATGATAT+TGG | + | chr4.2:87949540-87949559 | MS.gene33375:intron | 40.0% |
| !! | TTTTGTGGTTTGAGGTAAGG+GGG | - | chr4.2:87949986-87950005 | None:intergenic | 40.0% |
| AAACAAATGCCTCGTTCGCT+TGG | - | chr4.2:87948886-87948905 | None:intergenic | 45.0% | |
| AGGGGGTGGAATTAGCAAAA+AGG | - | chr4.2:87949969-87949988 | None:intergenic | 45.0% | |
| ATTGCTGAGCTTCTTAGGAG+TGG | + | chr4.2:87947872-87947891 | MS.gene33375:CDS | 45.0% | |
| CTCAACCTCAAATGCATAGG+TGG | - | chr4.2:87949374-87949393 | None:intergenic | 45.0% | |
| CTCTATAGAATGGGATGGGA+AGG | + | chr4.2:87948754-87948773 | MS.gene33375:CDS | 45.0% | |
| GCTCGTCTTAAAGCTTTCAC+CGG | + | chr4.2:87950193-87950212 | MS.gene33375:CDS | 45.0% | |
| GCTGCAGCATACATCAATGA+TGG | - | chr4.2:87948446-87948465 | None:intergenic | 45.0% | |
| TAAGGTCACGCAATTCTGGT+AGG | - | chr4.2:87948481-87948500 | None:intergenic | 45.0% | |
| TAATAGGGGACACAATCTGG+TGG | + | chr4.2:87949740-87949759 | MS.gene33375:intron | 45.0% | |
| !! | GTTCTAAGGTCACGCAATTC+TGG | - | chr4.2:87948485-87948504 | None:intergenic | 45.0% |
| ACACAATCTGGTGGAACTGG+AGG | + | chr4.2:87949749-87949768 | MS.gene33375:CDS | 50.0% | |
| AGCTTCTTGCACGCCCTATT+TGG | - | chr4.2:87949028-87949047 | None:intergenic | 50.0% | |
| CGTGCAAGAAGCTCATATGG+TGG | + | chr4.2:87949035-87949054 | MS.gene33375:intron | 50.0% | |
| GACTGAAGGGCTTCTGTTTG+AGG | + | chr4.2:87948198-87948217 | MS.gene33375:intron | 50.0% | |
| !! | GTCGGTGTTGGAACACTTGT+CGG | + | chr4.2:87948096-87948115 | MS.gene33375:intron | 50.0% |
| !! | TGATGGTGTCATGTCGGTGT+TGG | + | chr4.2:87948084-87948103 | MS.gene33375:intron | 50.0% |
| CAATCTGGTGGAACTGGAGG+AGG | + | chr4.2:87949752-87949771 | MS.gene33375:CDS | 55.0% | |
| CACAAATGTGGGGTGGTGCA+TGG | + | chr4.2:87950131-87950150 | MS.gene33375:CDS | 55.0% | |
| GCTTCTCACGAGTCCGAGTT+CGG | + | chr4.2:87948931-87948950 | MS.gene33375:intron | 55.0% | |
| GGGACACAATCTGGTGGAAC+TGG | + | chr4.2:87949746-87949765 | MS.gene33375:CDS | 55.0% | |
| GGGCGTGCAAGAAGCTCATA+TGG | + | chr4.2:87949032-87949051 | MS.gene33375:intron | 55.0% | |
| GGGTATGCACAAATGTGGGG+TGG | + | chr4.2:87950124-87950143 | MS.gene33375:CDS | 55.0% | |
| ! | TGTGGTTTGAGGTAAGGGGG+TGG | - | chr4.2:87949983-87950002 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 87947611 | 87950225 | 87947611 | ID=MS.gene33375 |
| chr4.2 | mRNA | 87947611 | 87950225 | 87947611 | ID=MS.gene33375.t1;Parent=MS.gene33375 |
| chr4.2 | exon | 87947611 | 87947660 | 87947611 | ID=MS.gene33375.t1.exon1;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87947611 | 87947660 | 87947611 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| chr4.2 | exon | 87947787 | 87947919 | 87947787 | ID=MS.gene33375.t1.exon2;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87947787 | 87947919 | 87947787 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| chr4.2 | exon | 87948199 | 87948302 | 87948199 | ID=MS.gene33375.t1.exon3;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87948199 | 87948302 | 87948199 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| chr4.2 | exon | 87948412 | 87948556 | 87948412 | ID=MS.gene33375.t1.exon4;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87948412 | 87948556 | 87948412 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| chr4.2 | exon | 87948680 | 87948817 | 87948680 | ID=MS.gene33375.t1.exon5;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87948680 | 87948817 | 87948680 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| chr4.2 | exon | 87949746 | 87950225 | 87949746 | ID=MS.gene33375.t1.exon6;Parent=MS.gene33375.t1 |
| chr4.2 | CDS | 87949746 | 87950225 | 87949746 | ID=cds.MS.gene33375.t1;Parent=MS.gene33375.t1 |
| Gene Sequence |
| Protein sequence |
