Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33832.t1 | KEH31018.1 | 85.1 | 382 | 41 | 2 | 1 | 382 | 1 | 366 | 6.70E-174 | 620.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33832.t1 | Q9S7T8 | 51.8 | 386 | 179 | 4 | 7 | 385 | 5 | 390 | 4.5e-110 | 399.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33832.t1 | A0A072UPQ2 | 85.1 | 382 | 41 | 2 | 1 | 382 | 1 | 366 | 4.8e-174 | 620.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene33832 | PPI |
| MS.gene031697 | MS.gene33832 | PPI |
| MS.gene33832 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene33832 | PPI |
| MS.gene33832 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33832.t1 | MTR_4g088535 | 85.079 | 382 | 41 | 2 | 1 | 382 | 1 | 366 | 0.0 | 629 |
| MS.gene33832.t1 | MTR_8g027395 | 77.895 | 380 | 84 | 0 | 6 | 385 | 16 | 395 | 0.0 | 612 |
| MS.gene33832.t1 | MTR_8g027420 | 77.895 | 380 | 73 | 1 | 6 | 385 | 5 | 373 | 0.0 | 604 |
| MS.gene33832.t1 | MTR_4g088525 | 79.224 | 361 | 75 | 0 | 26 | 386 | 8 | 368 | 0.0 | 575 |
| MS.gene33832.t1 | MTR_3g101010 | 71.875 | 384 | 104 | 1 | 7 | 386 | 5 | 388 | 0.0 | 532 |
| MS.gene33832.t1 | MTR_3g018740 | 71.354 | 384 | 107 | 2 | 7 | 387 | 5 | 388 | 0.0 | 525 |
| MS.gene33832.t1 | MTR_4g045707 | 68.229 | 384 | 120 | 2 | 5 | 386 | 4 | 387 | 0.0 | 512 |
| MS.gene33832.t1 | MTR_3g101030 | 63.145 | 407 | 123 | 7 | 5 | 386 | 24 | 428 | 1.54e-169 | 481 |
| MS.gene33832.t1 | MTR_2g045980 | 64.858 | 387 | 127 | 3 | 7 | 387 | 5 | 388 | 5.84e-168 | 475 |
| MS.gene33832.t1 | MTR_2g046030 | 64.083 | 387 | 130 | 3 | 7 | 387 | 5 | 388 | 8.23e-167 | 472 |
| MS.gene33832.t1 | MTR_8g461160 | 62.725 | 389 | 137 | 2 | 5 | 385 | 4 | 392 | 1.59e-166 | 471 |
| MS.gene33832.t1 | MTR_3g101180 | 62.532 | 395 | 134 | 3 | 5 | 385 | 4 | 398 | 3.29e-165 | 468 |
| MS.gene33832.t1 | MTR_3g048000 | 62.371 | 388 | 125 | 4 | 4 | 387 | 22 | 392 | 3.81e-165 | 468 |
| MS.gene33832.t1 | MTR_7g050810 | 59.948 | 387 | 147 | 2 | 7 | 385 | 16 | 402 | 1.83e-159 | 454 |
| MS.gene33832.t1 | MTR_3g101130 | 60.622 | 386 | 141 | 3 | 7 | 385 | 6 | 387 | 8.06e-157 | 447 |
| MS.gene33832.t1 | MTR_7g451890 | 58.915 | 387 | 151 | 2 | 7 | 385 | 14 | 400 | 1.69e-156 | 446 |
| MS.gene33832.t1 | MTR_7g050750 | 59.173 | 387 | 150 | 2 | 7 | 385 | 8 | 394 | 6.85e-156 | 444 |
| MS.gene33832.t1 | MTR_7g047780 | 59.432 | 387 | 149 | 2 | 7 | 385 | 14 | 400 | 1.44e-155 | 444 |
| MS.gene33832.t1 | MTR_3g101050 | 59.898 | 394 | 127 | 6 | 5 | 387 | 25 | 398 | 8.05e-150 | 429 |
| MS.gene33832.t1 | MTR_3g015620 | 60.207 | 387 | 122 | 4 | 7 | 385 | 16 | 378 | 1.87e-146 | 420 |
| MS.gene33832.t1 | MTR_3g102920 | 57.069 | 389 | 123 | 6 | 5 | 385 | 56 | 408 | 1.43e-136 | 396 |
| MS.gene33832.t1 | MTR_3g101200 | 53.247 | 385 | 149 | 4 | 7 | 385 | 31 | 390 | 1.15e-127 | 373 |
| MS.gene33832.t1 | MTR_3g101190 | 54.062 | 357 | 105 | 3 | 29 | 385 | 13 | 310 | 7.33e-121 | 352 |
| MS.gene33832.t1 | MTR_3g100995 | 65.748 | 254 | 82 | 3 | 135 | 385 | 11 | 262 | 4.00e-115 | 336 |
| MS.gene33832.t1 | MTR_3g100010 | 54.386 | 342 | 100 | 5 | 6 | 308 | 12 | 336 | 6.65e-112 | 331 |
| MS.gene33832.t1 | MTR_3g018747 | 65.900 | 261 | 71 | 3 | 131 | 387 | 9 | 255 | 4.70e-111 | 325 |
| MS.gene33832.t1 | MTR_7g050830 | 53.247 | 308 | 111 | 3 | 13 | 298 | 22 | 318 | 2.96e-103 | 308 |
| MS.gene33832.t1 | MTR_3g015760 | 57.455 | 275 | 109 | 4 | 116 | 385 | 8 | 279 | 2.31e-97 | 291 |
| MS.gene33832.t1 | MTR_3g114310 | 44.444 | 387 | 198 | 10 | 12 | 384 | 24 | 407 | 1.52e-95 | 291 |
| MS.gene33832.t1 | MTR_3g100520 | 64.815 | 216 | 65 | 4 | 172 | 385 | 1 | 207 | 2.16e-89 | 268 |
| MS.gene33832.t1 | MTR_3g101110 | 58.996 | 239 | 64 | 4 | 131 | 361 | 68 | 280 | 2.55e-85 | 261 |
| MS.gene33832.t1 | MTR_3g111160 | 67.488 | 203 | 63 | 2 | 187 | 386 | 17 | 219 | 1.36e-84 | 256 |
| MS.gene33832.t1 | MTR_3g099970 | 63.776 | 196 | 54 | 2 | 131 | 326 | 20 | 198 | 1.94e-81 | 248 |
| MS.gene33832.t1 | MTR_2g046410 | 60.550 | 218 | 77 | 4 | 176 | 387 | 135 | 349 | 3.18e-77 | 242 |
| MS.gene33832.t1 | MTR_3g102870 | 69.182 | 159 | 49 | 0 | 196 | 354 | 3 | 161 | 1.21e-70 | 219 |
| MS.gene33832.t1 | MTR_3g111150 | 62.428 | 173 | 41 | 1 | 10 | 182 | 2 | 150 | 4.72e-67 | 210 |
| MS.gene33832.t1 | MTR_3g101020 | 55.978 | 184 | 52 | 3 | 205 | 385 | 1 | 158 | 3.35e-60 | 192 |
| MS.gene33832.t1 | MTR_3g101150 | 61.783 | 157 | 52 | 1 | 237 | 385 | 1 | 157 | 1.98e-59 | 190 |
| MS.gene33832.t1 | MTR_3g100990 | 59.333 | 150 | 60 | 1 | 7 | 156 | 5 | 153 | 3.45e-49 | 173 |
| MS.gene33832.t1 | MTR_4g093550 | 66.667 | 84 | 28 | 0 | 7 | 90 | 6 | 89 | 1.98e-29 | 109 |
| MS.gene33832.t1 | MTR_6g046890 | 62.500 | 72 | 27 | 0 | 15 | 86 | 7 | 78 | 1.03e-18 | 82.4 |
| MS.gene33832.t1 | MTR_3g101140 | 54.412 | 68 | 26 | 1 | 324 | 386 | 48 | 115 | 2.80e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33832.t1 | AT1G47710 | 51.813 | 386 | 179 | 4 | 7 | 385 | 5 | 390 | 8.88e-141 | 406 |
| MS.gene33832.t1 | AT1G47710 | 51.813 | 386 | 179 | 4 | 7 | 385 | 32 | 417 | 2.44e-140 | 406 |
| MS.gene33832.t1 | AT3G45220 | 47.165 | 388 | 193 | 4 | 7 | 384 | 5 | 390 | 1.61e-121 | 357 |
| MS.gene33832.t1 | AT2G25240 | 49.219 | 384 | 183 | 7 | 7 | 384 | 5 | 382 | 1.93e-121 | 357 |
| MS.gene33832.t1 | AT2G26390 | 46.649 | 388 | 191 | 7 | 7 | 384 | 5 | 386 | 3.82e-115 | 341 |
| MS.gene33832.t1 | AT1G64030 | 41.753 | 388 | 195 | 5 | 7 | 384 | 5 | 371 | 3.82e-100 | 302 |
| MS.gene33832.t1 | AT2G14540 | 43.928 | 387 | 186 | 7 | 7 | 384 | 33 | 397 | 7.59e-99 | 300 |
| MS.gene33832.t1 | AT1G62170 | 42.424 | 363 | 178 | 4 | 31 | 384 | 91 | 431 | 3.38e-98 | 299 |
| MS.gene33832.t1 | AT1G62170 | 38.889 | 396 | 178 | 5 | 31 | 384 | 91 | 464 | 4.19e-91 | 282 |
| MS.gene33832.t1 | AT2G35580 | 42.061 | 359 | 179 | 7 | 35 | 384 | 33 | 371 | 6.98e-87 | 268 |
| MS.gene33832.t1 | AT1G64010 | 44.444 | 216 | 96 | 4 | 172 | 384 | 1 | 195 | 1.32e-58 | 189 |
| MS.gene33832.t1 | AT1G64010 | 44.059 | 202 | 89 | 4 | 186 | 384 | 1 | 181 | 1.27e-52 | 173 |
| MS.gene33832.t1 | AT1G62160 | 39.773 | 176 | 85 | 4 | 211 | 384 | 62 | 218 | 4.60e-33 | 123 |
| MS.gene33832.t1 | AT1G63280 | 50.435 | 115 | 53 | 2 | 131 | 243 | 8 | 120 | 8.80e-31 | 114 |
| MS.gene33832.t1 | AT1G51330 | 54.737 | 95 | 43 | 0 | 130 | 224 | 30 | 124 | 3.38e-27 | 107 |
| MS.gene33832.t1 | AT1G64020 | 33.036 | 112 | 72 | 3 | 12 | 121 | 10 | 120 | 2.97e-12 | 63.5 |
| MS.gene33832.t1 | AT2G35555 | 37.143 | 105 | 44 | 2 | 251 | 353 | 1 | 85 | 2.84e-11 | 60.8 |
Find 77 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATGAAAATTTGAATTT+TGG | 0.142435 | 4.4:+24318077 | None:intergenic |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 4.4:-24318508 | MS.gene33832:CDS |
| AATCGTGTCTCAAGATTATA+AGG | 0.314009 | 4.4:-24319906 | MS.gene33832:CDS |
| CTCAAAGATGCTACTTCTTC+CGG | 0.332638 | 4.4:-24320001 | MS.gene33832:CDS |
| TTCCCGCAAAGAGGATTGTT+TGG | 0.341043 | 4.4:+24317796 | None:intergenic |
| CTTGTCATCCAATCAGGAAA+TGG | 0.349930 | 4.4:+24318371 | None:intergenic |
| TCTCCTTCGTCGACGGTGTT+TGG | 0.362110 | 4.4:-24319967 | MS.gene33832:CDS |
| ACCCAAACAATCCTCTTTGC+GGG | 0.367701 | 4.4:-24317798 | MS.gene33832:CDS |
| TCCCGCAAAGAGGATTGTTT+GGG | 0.373202 | 4.4:+24317797 | None:intergenic |
| GGAGTAATCCATTTCCTGAT+TGG | 0.397440 | 4.4:-24318379 | MS.gene33832:CDS |
| CTTCGTCGACGGTGTTTGGC+TGG | 0.398379 | 4.4:-24319963 | MS.gene33832:CDS |
| TATTTGCTTGTCATCCAATC+AGG | 0.409872 | 4.4:+24318365 | None:intergenic |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.417147 | 4.4:-24318194 | MS.gene33832:CDS |
| TTGAGACACGATTTGATTGA+AGG | 0.417797 | 4.4:+24319916 | None:intergenic |
| CCAACTCGCACTCTATTACT+AGG | 0.420097 | 4.4:+24318113 | None:intergenic |
| GAAGGAGAGGTGAGGACCAC+CGG | 0.426414 | 4.4:+24319982 | None:intergenic |
| TTTCTCATTTACTTCAATGA+AGG | 0.433659 | 4.4:+24317929 | None:intergenic |
| TGAAGGAAGATTGAAGAGAA+AGG | 0.444235 | 4.4:+24319933 | None:intergenic |
| ACTGTAGCTGCTGCAGCCAG+TGG | 0.451974 | 4.4:-24317903 | MS.gene33832:CDS |
| GAAGGAAGATTGAAGAGAAA+GGG | 0.453228 | 4.4:+24319934 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 4.4:-24318507 | MS.gene33832:CDS |
| GATGATCAGTTGATTTGAAA+CGG | 0.457664 | 4.4:+24320059 | None:intergenic |
| GTCAGCTTTGGTTGAGAAGG+TGG | 0.459796 | 4.4:-24318168 | MS.gene33832:CDS |
| GTGCTCAGCATCATCGCTGC+TGG | 0.460796 | 4.4:-24320121 | MS.gene33832:CDS |
| TCTCGAATGCTGAAGGATCT+AGG | 0.461668 | 4.4:-24318044 | MS.gene33832:CDS |
| TACTAGGAAGCATGTGGTCT+AGG | 0.463533 | 4.4:+24318129 | None:intergenic |
| TGCAGCCAGTGGTGCACTTG+TGG | 0.465613 | 4.4:-24317892 | MS.gene33832:CDS |
| AACCCAAACAATCCTCTTTG+CGG | 0.470561 | 4.4:-24317799 | MS.gene33832:CDS |
| ATCAAGGTTGGTGGTCATGA+AGG | 0.471015 | 4.4:+24318304 | None:intergenic |
| AATCTCTAATAAACTGATCA+AGG | 0.471670 | 4.4:+24318288 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.478625 | 4.4:-24320112 | MS.gene33832:CDS |
| CGATGATGCTGAGCACAACT+TGG | 0.481338 | 4.4:+24320128 | None:intergenic |
| CATGGCCACAAGTGCACCAC+TGG | 0.482503 | 4.4:+24317887 | None:intergenic |
| CGGAAGAAGTAGCATCTTTG+AGG | 0.492859 | 4.4:+24320002 | None:intergenic |
| TGGTGAGAGAAACTTTCGTT+TGG | 0.493673 | 4.4:+24320212 | None:intergenic |
| GTGGCCATGTGTATTCCATC+TGG | 0.494909 | 4.4:-24317873 | MS.gene33832:CDS |
| ATAAAAGAACTTCTTCCTCA+AGG | 0.498947 | 4.4:-24318461 | MS.gene33832:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 4.4:+24318421 | None:intergenic |
| GAAGGACTTGTGAAATATGT+TGG | 0.499945 | 4.4:+24317947 | None:intergenic |
| AAAAGATGGTCTGTCAGCTT+TGG | 0.500468 | 4.4:-24318180 | MS.gene33832:CDS |
| TTCATTGAAGTAAATGAGAA+AGG | 0.501361 | 4.4:-24317927 | MS.gene33832:CDS |
| TCTAATAAACTGATCAAGGT+TGG | 0.501475 | 4.4:+24318292 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.504339 | 4.4:-24320113 | MS.gene33832:CDS |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 4.4:+24318011 | None:intergenic |
| CTTCGTCTTCCTTATAAGCA+AGG | 0.506335 | 4.4:-24318248 | MS.gene33832:CDS |
| AAAATGGTGGACTCACTTGA+AGG | 0.507736 | 4.4:-24317987 | MS.gene33832:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 4.4:+24317828 | None:intergenic |
| AGTAATAGAGTGCGAGTTGG+TGG | 0.515787 | 4.4:-24318110 | MS.gene33832:CDS |
| TTCTTTGGAGAAAAGATGAC+TGG | 0.516041 | 4.4:+24320186 | None:intergenic |
| TAAAAGAACTTCTTCCTCAA+GGG | 0.519561 | 4.4:-24318460 | MS.gene33832:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 4.4:+24317829 | None:intergenic |
| TTCTGTTGATTTCAAGAACA+AGG | 0.537281 | 4.4:-24319873 | MS.gene33832:intron |
| GCTATAAAGTCTACTCCAGA+TGG | 0.537833 | 4.4:+24317858 | None:intergenic |
| GAAGAAGAACAAACAATGGC+GGG | 0.540611 | 4.4:-24320259 | None:intergenic |
| CCTCACCTCTCCTTCGTCGA+CGG | 0.544904 | 4.4:-24319974 | MS.gene33832:CDS |
| ACTTATGATCACTCAGAAAG+AGG | 0.545743 | 4.4:+24317762 | None:intergenic |
| TGAAACTTCTCGAATGCTGA+AGG | 0.558916 | 4.4:-24318051 | MS.gene33832:CDS |
| TCTGAATGGCAGCTCAGTCA+AGG | 0.571104 | 4.4:-24318330 | MS.gene33832:CDS |
| AATAAACTGATCAAGGTTGG+TGG | 0.575387 | 4.4:+24318295 | None:intergenic |
| TCTGTCAGCTTTGGTTGAGA+AGG | 0.577265 | 4.4:-24318171 | MS.gene33832:CDS |
| GAAATATGTTGGAAACTGAA+AGG | 0.583772 | 4.4:+24317958 | None:intergenic |
| TCAAGGTTGGTGGTCATGAA+GGG | 0.598587 | 4.4:+24318305 | None:intergenic |
| TGACTGAGCTGCCATTCAGA+AGG | 0.600319 | 4.4:+24318333 | None:intergenic |
| GAAATCAACAGAAGACAAAG+TGG | 0.613498 | 4.4:+24319883 | None:intergenic |
| CAGCCAAACACCGTCGACGA+AGG | 0.620777 | 4.4:+24319964 | None:intergenic |
| AGAAAGTAGATGAGAGACAG+AGG | 0.627958 | 4.4:+24320030 | None:intergenic |
| AGCACAACTTGGAGAGACAA+TGG | 0.636110 | 4.4:+24320139 | None:intergenic |
| AAACACCGTCGACGAAGGAG+AGG | 0.646417 | 4.4:+24319969 | None:intergenic |
| AAAGATGCTACTTCTTCCGG+TGG | 0.648544 | 4.4:-24319998 | MS.gene33832:CDS |
| CCTAGTAATAGAGTGCGAGT+TGG | 0.649890 | 4.4:-24318113 | MS.gene33832:CDS |
| TACTCCAGATGGAATACACA+TGG | 0.653449 | 4.4:+24317869 | None:intergenic |
| CTCTATTACTAGGAAGCATG+TGG | 0.654298 | 4.4:+24318123 | None:intergenic |
| GGAGAAAAGATGACTGGCGA+TGG | 0.668611 | 4.4:+24320192 | None:intergenic |
| CCGTCGACGAAGGAGAGGTG+AGG | 0.692216 | 4.4:+24319974 | None:intergenic |
| ATAAGCAAGGAAAAGATGAG+CGG | 0.694027 | 4.4:-24318235 | MS.gene33832:CDS |
| GATCAGTTGATTTGAAACGG+AGG | 0.698316 | 4.4:+24320062 | None:intergenic |
| AAGTTGTCGACTGACCCTTG+AGG | 0.724613 | 4.4:+24318446 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATAAAATAACCACA+TGG | + | chr4.4:24318464-24318483 | None:intergenic | 15.0% |
| !! | AATATATAAAATAACCACAT+GGG | + | chr4.4:24318463-24318482 | None:intergenic | 15.0% |
| !! | ATTGTAATTAAAACATAAGT+TGG | - | chr4.4:24318737-24318756 | MS.gene33832:intron | 15.0% |
| !!! | CAAAATTCAAATTTTCATAT+GGG | - | chr4.4:24319938-24319957 | MS.gene33832:CDS | 15.0% |
| !!! | TAAATTTGACATGATTTTAA+AGG | - | chr4.4:24319474-24319493 | MS.gene33832:intron | 15.0% |
| !! | ACTACTAGAAAATCAAAAAT+AGG | + | chr4.4:24318636-24318655 | None:intergenic | 20.0% |
| !! | CTACTAGAAAATCAAAAATA+GGG | + | chr4.4:24318635-24318654 | None:intergenic | 20.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | + | chr4.4:24320188-24320207 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | + | chr4.4:24320189-24320208 | None:intergenic | 20.0% |
| !! | TTTGTTTGTTTGTAAAAACT+CGG | - | chr4.4:24318319-24318338 | MS.gene33832:CDS | 20.0% |
| !!! | CCAAAATTCAAATTTTCATA+TGG | - | chr4.4:24319937-24319956 | MS.gene33832:CDS | 20.0% |
| !!! | CCATATGAAAATTTGAATTT+TGG | + | chr4.4:24319940-24319959 | None:intergenic | 20.0% |
| ! | AAAACAATAAGAAGAAGAAG+AGG | + | chr4.4:24319336-24319355 | None:intergenic | 25.0% |
| ! | AATCTCTAATAAACTGATCA+AGG | + | chr4.4:24319729-24319748 | None:intergenic | 25.0% |
| ! | GAATCCCATCATTTATATAT+GGG | - | chr4.4:24318352-24318371 | MS.gene33832:CDS | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | - | chr4.4:24319507-24319526 | MS.gene33832:intron | 25.0% |
| ! | GGAAAAAAAAATCTACTTTG+TGG | + | chr4.4:24319036-24319055 | None:intergenic | 25.0% |
| ! | TGAAATGGAAAGATTAAATC+AGG | + | chr4.4:24318998-24319017 | None:intergenic | 25.0% |
| ! | TGAATCCCATCATTTATATA+TGG | - | chr4.4:24318351-24318370 | MS.gene33832:CDS | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | - | chr4.4:24319506-24319525 | MS.gene33832:intron | 25.0% |
| ! | TTAGCCCATATATAAATGAT+GGG | + | chr4.4:24318359-24318378 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAGAA+AGG | - | chr4.4:24320087-24320106 | MS.gene33832:CDS | 25.0% |
| ! | TTTAAACGGTGTTTGATTAA+TGG | - | chr4.4:24318886-24318905 | MS.gene33832:intron | 25.0% |
| ! | TTTCATGAATAACACATCAA+AGG | - | chr4.4:24319058-24319077 | MS.gene33832:intron | 25.0% |
| ! | TTTCTCATTTACTTCAATGA+AGG | + | chr4.4:24320088-24320107 | None:intergenic | 25.0% |
| ! | TTTGATTAATGGTTATACTG+TGG | - | chr4.4:24318897-24318916 | MS.gene33832:intron | 25.0% |
| !! | CAGTTTATTAGAGATTTTGA+TGG | - | chr4.4:24319733-24319752 | MS.gene33832:intron | 25.0% |
| !! | GTGGAAACAAATTTAGAATA+CGG | + | chr4.4:24319097-24319116 | None:intergenic | 25.0% |
| !! | TAAATTTGTTTCCACTGTAT+GGG | - | chr4.4:24319102-24319121 | MS.gene33832:intron | 25.0% |
| !! | TGATGTGTTATTCATGAAAA+AGG | + | chr4.4:24319057-24319076 | None:intergenic | 25.0% |
| !! | TGCAAGTAAAGAATTTTTGA+GGG | - | chr4.4:24318580-24318599 | MS.gene33832:intron | 25.0% |
| !! | TTCATGCTTAATTTTAAGCT+AGG | - | chr4.4:24318215-24318234 | MS.gene33832:CDS | 25.0% |
| !! | TTGCAAGTAAAGAATTTTTG+AGG | - | chr4.4:24318579-24318598 | MS.gene33832:intron | 25.0% |
| !!! | ATTGCAATAATGCCTTTTTT+CGG | - | chr4.4:24318819-24318838 | MS.gene33832:intron | 25.0% |
| !!! | GCTAATGCATTGTATTTTAA+AGG | - | chr4.4:24319607-24319626 | MS.gene33832:intron | 25.0% |
| AATCGTGTCTCAAGATTATA+AGG | - | chr4.4:24318108-24318127 | MS.gene33832:CDS | 30.0% | |
| AGAAAAGCAAAAATCAGAGA+GGG | - | chr4.4:24318519-24318538 | MS.gene33832:CDS | 30.0% | |
| AGTGTTAGTAATTATACCCT+TGG | - | chr4.4:24318957-24318976 | MS.gene33832:intron | 30.0% | |
| ATAAAAGAACTTCTTCCTCA+AGG | - | chr4.4:24319553-24319572 | MS.gene33832:intron | 30.0% | |
| ATAAAATAACCACATGGGTT+AGG | + | chr4.4:24318458-24318477 | None:intergenic | 30.0% | |
| ATAGGGAGGAAAATTAATGA+CGG | + | chr4.4:24318618-24318637 | None:intergenic | 30.0% | |
| CTAGAAAATCAAAAATAGGG+AGG | + | chr4.4:24318632-24318651 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACTGAA+AGG | + | chr4.4:24320059-24320078 | None:intergenic | 30.0% | |
| GATGTTATGCTAACTTGATT+TGG | - | chr4.4:24318926-24318945 | MS.gene33832:intron | 30.0% | |
| GTTAGCCCATATATAAATGA+TGG | + | chr4.4:24318360-24318379 | None:intergenic | 30.0% | |
| TAAAAGAACTTCTTCCTCAA+GGG | - | chr4.4:24319554-24319573 | MS.gene33832:intron | 30.0% | |
| TAGAAAAGCAAAAATCAGAG+AGG | - | chr4.4:24318518-24318537 | MS.gene33832:CDS | 30.0% | |
| TAGTAATTATACCCTTGGTT+TGG | - | chr4.4:24318962-24318981 | MS.gene33832:intron | 30.0% | |
| TATAGCAGTGCTAAATTAGT+TGG | + | chr4.4:24319366-24319385 | None:intergenic | 30.0% | |
| TCTAATAAACTGATCAAGGT+TGG | + | chr4.4:24319725-24319744 | None:intergenic | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | - | chr4.4:24319001-24319020 | MS.gene33832:intron | 30.0% | |
| TTACTTGCAACATTTAGTGA+CGG | + | chr4.4:24318569-24318588 | None:intergenic | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | - | chr4.4:24319820-24319839 | MS.gene33832:intron | 30.0% | |
| ! | AATGGTTATACTGTGGTTTT+TGG | - | chr4.4:24318904-24318923 | MS.gene33832:intron | 30.0% |
| ! | CTAAATTTGTTTCCACTGTA+TGG | - | chr4.4:24319101-24319120 | MS.gene33832:intron | 30.0% |
| ! | GATGTTCTTTTCTGATTCTT+TGG | + | chr4.4:24317846-24317865 | None:intergenic | 30.0% |
| ! | GCTTAATTTTAAGCTAGGTT+GGG | - | chr4.4:24318220-24318239 | MS.gene33832:CDS | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | - | chr4.4:24319670-24319689 | MS.gene33832:intron | 30.0% |
| ! | TCATCTTTTCCTTGCTTATA+AGG | + | chr4.4:24319778-24319797 | None:intergenic | 30.0% |
| ! | TGCTTAATTTTAAGCTAGGT+TGG | - | chr4.4:24318219-24318238 | MS.gene33832:CDS | 30.0% |
| !! | CATTGTATTTTAAAGGAGCA+TGG | - | chr4.4:24319614-24319633 | MS.gene33832:intron | 30.0% |
| !! | GATGATCAGTTGATTTGAAA+CGG | + | chr4.4:24317958-24317977 | None:intergenic | 30.0% |
| !! | TGACATGATTTTAAAGGCTA+TGG | - | chr4.4:24319480-24319499 | MS.gene33832:intron | 30.0% |
| !! | TTCTGTTGATTTCAAGAACA+AGG | - | chr4.4:24318141-24318160 | MS.gene33832:CDS | 30.0% |
| !! | TTTGCTTTTCTAGTAGAGAT+GGG | + | chr4.4:24318510-24318529 | None:intergenic | 30.0% |
| !! | TTTTGCTTTTCTAGTAGAGA+TGG | + | chr4.4:24318511-24318530 | None:intergenic | 30.0% |
| !!! | CATAAGTTGGTTTTGTGATT+TGG | - | chr4.4:24318750-24318769 | MS.gene33832:intron | 30.0% |
| AATAAACTGATCAAGGTTGG+TGG | + | chr4.4:24319722-24319741 | None:intergenic | 35.0% | |
| ATAAGCAAGGAAAAGATGAG+CGG | - | chr4.4:24319779-24319798 | MS.gene33832:intron | 35.0% | |
| GAAATCAACAGAAGACAAAG+TGG | + | chr4.4:24318134-24318153 | None:intergenic | 35.0% | |
| GAAATTATGAGCCAAACCAA+GGG | + | chr4.4:24318976-24318995 | None:intergenic | 35.0% | |
| GAAGGAAGATTGAAGAGAAA+GGG | + | chr4.4:24318083-24318102 | None:intergenic | 35.0% | |
| GAAGGACTTGTGAAATATGT+TGG | + | chr4.4:24320070-24320089 | None:intergenic | 35.0% | |
| GATATCAGGTTTGAATCCTT+CGG | + | chr4.4:24318398-24318417 | None:intergenic | 35.0% | |
| GTTTGTAAAAACTCGGTATC+CGG | - | chr4.4:24318326-24318345 | MS.gene33832:CDS | 35.0% | |
| TAGGGAGGAAAATTAATGAC+GGG | + | chr4.4:24318617-24318636 | None:intergenic | 35.0% | |
| TATTTGCTTGTCATCCAATC+AGG | + | chr4.4:24319652-24319671 | None:intergenic | 35.0% | |
| TGAAATCCTACTAACTCTCT+TGG | + | chr4.4:24319151-24319170 | None:intergenic | 35.0% | |
| TGAAGGAAGATTGAAGAGAA+AGG | + | chr4.4:24318084-24318103 | None:intergenic | 35.0% | |
| TTCAAACCTGATATCTTGAG+AGG | - | chr4.4:24318403-24318422 | MS.gene33832:CDS | 35.0% | |
| TTGAGACACGATTTGATTGA+AGG | + | chr4.4:24318101-24318120 | None:intergenic | 35.0% | |
| TTTGTAAAAACTCGGTATCC+GGG | - | chr4.4:24318327-24318346 | MS.gene33832:CDS | 35.0% | |
| ! | ATAAATGATGGGATTCATCC+CGG | + | chr4.4:24318348-24318367 | None:intergenic | 35.0% |
| ! | ATTTAGTGACGGAATTAGAG+AGG | + | chr4.4:24318558-24318577 | None:intergenic | 35.0% |
| ! | ATTTTACCTTTCTCTTCTGG+AGG | - | chr4.4:24319997-24320016 | MS.gene33832:CDS | 35.0% |
| ! | GTGATTTTACCTTTCTCTTC+TGG | - | chr4.4:24319994-24320013 | MS.gene33832:CDS | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | - | chr4.4:24320011-24320030 | MS.gene33832:CDS | 35.0% |
| ! | TTCTTTGGAGAAAAGATGAC+TGG | + | chr4.4:24317831-24317850 | None:intergenic | 35.0% |
| ! | TTTAGTGACGGAATTAGAGA+GGG | + | chr4.4:24318557-24318576 | None:intergenic | 35.0% |
| !! | GATTTTCTAGTAGTGCATGT+GGG | - | chr4.4:24318642-24318661 | MS.gene33832:intron | 35.0% |
| !! | TCTTGCTCTTGGTGTTTAAA+CGG | - | chr4.4:24318872-24318891 | MS.gene33832:intron | 35.0% |
| !! | TGATTTTCTAGTAGTGCATG+TGG | - | chr4.4:24318641-24318660 | MS.gene33832:intron | 35.0% |
| AAAAGATGGTCTGTCAGCTT+TGG | - | chr4.4:24319834-24319853 | MS.gene33832:intron | 40.0% | |
| AACCCAAACAATCCTCTTTG+CGG | - | chr4.4:24320215-24320234 | MS.gene33832:CDS | 40.0% | |
| AACTTGGGCTTAATGGTTCA+AGG | - | chr4.4:24318249-24318268 | MS.gene33832:CDS | 40.0% | |
| AATTGACGATGCAACTTTCC+AGG | - | chr4.4:24319299-24319318 | MS.gene33832:intron | 40.0% | |
| ACAATCGCACAACCGAAAAA+AGG | + | chr4.4:24318834-24318853 | None:intergenic | 40.0% | |
| ACATGGTAATTCCCATACAG+TGG | + | chr4.4:24319116-24319135 | None:intergenic | 40.0% | |
| AGAAAGTAGATGAGAGACAG+AGG | + | chr4.4:24317987-24318006 | None:intergenic | 40.0% | |
| CCTTCGGTTCCAAATTATGT+GGG | + | chr4.4:24318382-24318401 | None:intergenic | 40.0% | |
| CTTCGTCTTCCTTATAAGCA+AGG | - | chr4.4:24319766-24319785 | MS.gene33832:intron | 40.0% | |
| CTTGTCATCCAATCAGGAAA+TGG | + | chr4.4:24319646-24319665 | None:intergenic | 40.0% | |
| GATCACAAACTTGGGCTTAA+TGG | - | chr4.4:24318242-24318261 | MS.gene33832:CDS | 40.0% | |
| GCTATAAAGTCTACTCCAGA+TGG | + | chr4.4:24320159-24320178 | None:intergenic | 40.0% | |
| GGAAATTATGAGCCAAACCA+AGG | + | chr4.4:24318977-24318996 | None:intergenic | 40.0% | |
| GGAGTAATCCATTTCCTGAT+TGG | - | chr4.4:24319635-24319654 | MS.gene33832:intron | 40.0% | |
| GTTAACGCATTTCTTGCTCT+TGG | - | chr4.4:24318861-24318880 | MS.gene33832:intron | 40.0% | |
| TACTCCAGATGGAATACACA+TGG | + | chr4.4:24320148-24320167 | None:intergenic | 40.0% | |
| TATACCATGCCAGGATGAAA+TGG | + | chr4.4:24319013-24319032 | None:intergenic | 40.0% | |
| TATGGTCCTCTCAAGATATC+AGG | + | chr4.4:24318412-24318431 | None:intergenic | 40.0% | |
| TCCTTCGGTTCCAAATTATG+TGG | + | chr4.4:24318383-24318402 | None:intergenic | 40.0% | |
| TGAAACTTCTCGAATGCTGA+AGG | - | chr4.4:24319963-24319982 | MS.gene33832:CDS | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | + | chr4.4:24319596-24319615 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | - | chr4.4:24320014-24320033 | MS.gene33832:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr4.4:24319526-24319545 | MS.gene33832:intron | 40.0% | |
| TGGTGAGAGAAACTTTCGTT+TGG | + | chr4.4:24317805-24317824 | None:intergenic | 40.0% | |
| ! | ATGGGCTAACCCACATAATT+TGG | - | chr4.4:24318370-24318389 | MS.gene33832:CDS | 40.0% |
| ! | CATGTGGGTTATTTGATAGC+GGG | - | chr4.4:24318657-24318676 | MS.gene33832:intron | 40.0% |
| ! | CTCAAAGATGCTACTTCTTC+CGG | - | chr4.4:24318013-24318032 | MS.gene33832:CDS | 40.0% |
| ! | CTCTATTACTAGGAAGCATG+TGG | + | chr4.4:24319894-24319913 | None:intergenic | 40.0% |
| ! | GACAGACCATCTTTTGCATT+TGG | + | chr4.4:24319829-24319848 | None:intergenic | 40.0% |
| ! | GCATGTGGGTTATTTGATAG+CGG | - | chr4.4:24318656-24318675 | MS.gene33832:intron | 40.0% |
| ! | TAGGTTGGGATCACAAACTT+GGG | - | chr4.4:24318234-24318253 | MS.gene33832:CDS | 40.0% |
| !! | AAAATGGTGGACTCACTTGA+AGG | - | chr4.4:24320027-24320046 | MS.gene33832:CDS | 40.0% |
| !! | GATCAGTTGATTTGAAACGG+AGG | + | chr4.4:24317955-24317974 | None:intergenic | 40.0% |
| ACCCAAACAATCCTCTTTGC+GGG | - | chr4.4:24320216-24320235 | MS.gene33832:CDS | 45.0% | |
| ACTTTGTGGTATACCATGCC+AGG | + | chr4.4:24319022-24319041 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGAGACAA+TGG | + | chr4.4:24317878-24317897 | None:intergenic | 45.0% | |
| ATTTAGTAGCCAACACCACG+AGG | - | chr4.4:24318480-24318499 | MS.gene33832:CDS | 45.0% | |
| CCAACTCGCACTCTATTACT+AGG | + | chr4.4:24319904-24319923 | None:intergenic | 45.0% | |
| CCTAGTAATAGAGTGCGAGT+TGG | - | chr4.4:24319901-24319920 | MS.gene33832:CDS | 45.0% | |
| CGGAAGAAGTAGCATCTTTG+AGG | + | chr4.4:24318015-24318034 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCA+TGG | - | chr4.4:24319006-24319025 | MS.gene33832:intron | 45.0% | |
| GAAGAGGAAGAAAGACTTCC+TGG | + | chr4.4:24319320-24319339 | None:intergenic | 45.0% | |
| GCTTCTCCAAGAGAGTTAGT+AGG | - | chr4.4:24319142-24319161 | MS.gene33832:intron | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | + | chr4.4:24320006-24320025 | None:intergenic | 45.0% | |
| TCCCGCAAAGAGGATTGTTT+GGG | + | chr4.4:24320220-24320239 | None:intergenic | 45.0% | |
| TCTCGAATGCTGAAGGATCT+AGG | - | chr4.4:24319970-24319989 | MS.gene33832:CDS | 45.0% | |
| TTCCCGCAAAGAGGATTGTT+TGG | + | chr4.4:24320221-24320240 | None:intergenic | 45.0% | |
| ! | AAAGATGCTACTTCTTCCGG+TGG | - | chr4.4:24318016-24318035 | MS.gene33832:CDS | 45.0% |
| ! | AGTAATAGAGTGCGAGTTGG+TGG | - | chr4.4:24319904-24319923 | MS.gene33832:CDS | 45.0% |
| ! | CCCACATAATTTGGAACCGA+AGG | - | chr4.4:24318379-24318398 | MS.gene33832:CDS | 45.0% |
| ! | CTAGGTTGGGATCACAAACT+TGG | - | chr4.4:24318233-24318252 | MS.gene33832:CDS | 45.0% |
| ! | CTTGGAGAAGCATGTCTACA+TGG | + | chr4.4:24319133-24319152 | None:intergenic | 45.0% |
| ! | TACTAGGAAGCATGTGGTCT+AGG | + | chr4.4:24319888-24319907 | None:intergenic | 45.0% |
| ! | TCTGTCAGCTTTGGTTGAGA+AGG | - | chr4.4:24319843-24319862 | MS.gene33832:intron | 45.0% |
| !! | AATAACCACATGGGTTAGGC+TGG | + | chr4.4:24318454-24318473 | None:intergenic | 45.0% |
| !! | ATCAAGGTTGGTGGTCATGA+AGG | + | chr4.4:24319713-24319732 | None:intergenic | 45.0% |
| !! | TCAAGGTTGGTGGTCATGAA+GGG | + | chr4.4:24319712-24319731 | None:intergenic | 45.0% |
| CGATGATGCTGAGCACAACT+TGG | + | chr4.4:24317889-24317908 | None:intergenic | 50.0% | |
| GGAGAAAAGATGACTGGCGA+TGG | + | chr4.4:24317825-24317844 | None:intergenic | 50.0% | |
| GGTGTAGGGATCGTGAAGTA+TGG | + | chr4.4:24318430-24318449 | None:intergenic | 50.0% | |
| GTGGCCATGTGTATTCCATC+TGG | - | chr4.4:24320141-24320160 | MS.gene33832:CDS | 50.0% | |
| TCTGAATGGCAGCTCAGTCA+AGG | - | chr4.4:24319684-24319703 | MS.gene33832:intron | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | + | chr4.4:24319684-24319703 | None:intergenic | 50.0% | |
| ! | AAGTTGTCGACTGACCCTTG+AGG | + | chr4.4:24319571-24319590 | None:intergenic | 50.0% |
| ! | GTCAGCTTTGGTTGAGAAGG+TGG | - | chr4.4:24319846-24319865 | MS.gene33832:intron | 50.0% |
| ! | TGAGCACTTTTCCCGCAAAG+AGG | + | chr4.4:24320230-24320249 | None:intergenic | 50.0% |
| AAACACCGTCGACGAAGGAG+AGG | + | chr4.4:24318048-24318067 | None:intergenic | 55.0% | |
| TCTCCTTCGTCGACGGTGTT+TGG | - | chr4.4:24318047-24318066 | MS.gene33832:CDS | 55.0% | |
| ! | TGGGTTAGGCTGGTGGTGTA+GGG | + | chr4.4:24318444-24318463 | None:intergenic | 55.0% |
| !! | AACCACATGGGTTAGGCTGG+TGG | + | chr4.4:24318451-24318470 | None:intergenic | 55.0% |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr4.4:24317902-24317921 | MS.gene33832:CDS | 55.0% |
| !! | ATGGGTTAGCCTCGTGGTGT+TGG | + | chr4.4:24318492-24318511 | None:intergenic | 55.0% |
| !! | ATGGGTTAGGCTGGTGGTGT+AGG | + | chr4.4:24318445-24318464 | None:intergenic | 55.0% |
| !! | GTAGAGATGGGTTAGCCTCG+TGG | + | chr4.4:24318498-24318517 | None:intergenic | 55.0% |
| ACTGTAGCTGCTGCAGCCAG+TGG | - | chr4.4:24320111-24320130 | MS.gene33832:CDS | 60.0% | |
| CACCACCAGCCTAACCCATG+TGG | - | chr4.4:24318446-24318465 | MS.gene33832:CDS | 60.0% | |
| CAGCCAAACACCGTCGACGA+AGG | + | chr4.4:24318053-24318072 | None:intergenic | 60.0% | |
| CATGGCCACAAGTGCACCAC+TGG | + | chr4.4:24320130-24320149 | None:intergenic | 60.0% | |
| CCTCACCTCTCCTTCGTCGA+CGG | - | chr4.4:24318040-24318059 | MS.gene33832:CDS | 60.0% | |
| CTTCGTCGACGGTGTTTGGC+TGG | - | chr4.4:24318051-24318070 | MS.gene33832:CDS | 60.0% | |
| GAAGGAGAGGTGAGGACCAC+CGG | + | chr4.4:24318035-24318054 | None:intergenic | 60.0% | |
| GTGCTCAGCATCATCGCTGC+TGG | - | chr4.4:24317893-24317912 | MS.gene33832:CDS | 60.0% | |
| TGCAGCCAGTGGTGCACTTG+TGG | - | chr4.4:24320122-24320141 | MS.gene33832:CDS | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr4.4:24317901-24317920 | MS.gene33832:CDS | 60.0% |
| CCGTCGACGAAGGAGAGGTG+AGG | + | chr4.4:24318043-24318062 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24317770 | 24320266 | 24317770 | ID=MS.gene33832 |
| chr4.4 | mRNA | 24317770 | 24320266 | 24317770 | ID=MS.gene33832.t1;Parent=MS.gene33832 |
| chr4.4 | exon | 24319874 | 24320266 | 24319874 | ID=MS.gene33832.t1.exon1;Parent=MS.gene33832.t1 |
| chr4.4 | CDS | 24319874 | 24320266 | 24319874 | ID=cds.MS.gene33832.t1;Parent=MS.gene33832.t1 |
| chr4.4 | exon | 24317770 | 24318540 | 24317770 | ID=MS.gene33832.t1.exon2;Parent=MS.gene33832.t1 |
| chr4.4 | CDS | 24317770 | 24318540 | 24317770 | ID=cds.MS.gene33832.t1;Parent=MS.gene33832.t1 |
| Gene Sequence |
| Protein sequence |
