Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33951.t1 | XP_013469526.1 | 83.4 | 763 | 48 | 6 | 1 | 698 | 50 | 798 | 0.00E+00 | 1157.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33951.t1 | Q8S3U9 | 59.4 | 764 | 223 | 10 | 1 | 698 | 195 | 937 | 4.0e-234 | 812.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33951.t1 | A0A072VNG9 | 83.4 | 763 | 48 | 6 | 1 | 698 | 50 | 798 | 0.0e+00 | 1157.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene33951 | 0.807058 | 6.09E-50 | -1.69E-46 |
| MS.gene049744 | MS.gene33951 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene050348 | MS.gene33951 | 0.844684 | 6.49E-59 | -1.69E-46 |
| MS.gene051198 | MS.gene33951 | 0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene33951 | 0.827087 | 1.90E-54 | -1.69E-46 |
| MS.gene052311 | MS.gene33951 | 0.814876 | 1.23E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene33951 | 0.807177 | 5.74E-50 | -1.69E-46 |
| MS.gene052775 | MS.gene33951 | 0.824812 | 6.59E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene33951 | 0.82172 | 3.48E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene33951 | 0.84197 | 3.44E-58 | -1.69E-46 |
| MS.gene056519 | MS.gene33951 | 0.811514 | 6.74E-51 | -1.69E-46 |
| MS.gene056622 | MS.gene33951 | 0.80784 | 4.15E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene33951 | 0.819799 | 9.61E-53 | -1.69E-46 |
| MS.gene058919 | MS.gene33951 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene33951 | 0.802656 | 5.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 3543 | gene | 952 | 12222 | 952 | ID=MS.gene33951 |
| 3543 | mRNA | 952 | 12222 | 952 | ID=MS.gene33951.t1;Parent=MS.gene33951 |
| 3543 | exon | 12175 | 12222 | 12175 | ID=MS.gene33951.t1.exon1;Parent=MS.gene33951.t1 |
| 3543 | CDS | 12175 | 12222 | 12175 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 10985 | 11054 | 10985 | ID=MS.gene33951.t1.exon2;Parent=MS.gene33951.t1 |
| 3543 | CDS | 10985 | 11054 | 10985 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 10882 | 10954 | 10882 | ID=MS.gene33951.t1.exon3;Parent=MS.gene33951.t1 |
| 3543 | CDS | 10882 | 10954 | 10882 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 10548 | 10675 | 10548 | ID=MS.gene33951.t1.exon4;Parent=MS.gene33951.t1 |
| 3543 | CDS | 10548 | 10675 | 10548 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 10297 | 10455 | 10297 | ID=MS.gene33951.t1.exon5;Parent=MS.gene33951.t1 |
| 3543 | CDS | 10297 | 10455 | 10297 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 10026 | 10112 | 10026 | ID=MS.gene33951.t1.exon6;Parent=MS.gene33951.t1 |
| 3543 | CDS | 10026 | 10112 | 10026 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 9233 | 9307 | 9233 | ID=MS.gene33951.t1.exon7;Parent=MS.gene33951.t1 |
| 3543 | CDS | 9233 | 9307 | 9233 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 8537 | 8674 | 8537 | ID=MS.gene33951.t1.exon8;Parent=MS.gene33951.t1 |
| 3543 | CDS | 8537 | 8674 | 8537 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 8283 | 8456 | 8283 | ID=MS.gene33951.t1.exon9;Parent=MS.gene33951.t1 |
| 3543 | CDS | 8283 | 8456 | 8283 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 7886 | 7984 | 7886 | ID=MS.gene33951.t1.exon10;Parent=MS.gene33951.t1 |
| 3543 | CDS | 7886 | 7984 | 7886 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 6576 | 6702 | 6576 | ID=MS.gene33951.t1.exon11;Parent=MS.gene33951.t1 |
| 3543 | CDS | 6576 | 6702 | 6576 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 6291 | 6501 | 6291 | ID=MS.gene33951.t1.exon12;Parent=MS.gene33951.t1 |
| 3543 | CDS | 6291 | 6501 | 6291 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 5127 | 5242 | 5127 | ID=MS.gene33951.t1.exon13;Parent=MS.gene33951.t1 |
| 3543 | CDS | 5127 | 5242 | 5127 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 4923 | 4976 | 4923 | ID=MS.gene33951.t1.exon14;Parent=MS.gene33951.t1 |
| 3543 | CDS | 4923 | 4976 | 4923 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 4743 | 4890 | 4743 | ID=MS.gene33951.t1.exon15;Parent=MS.gene33951.t1 |
| 3543 | CDS | 4743 | 4890 | 4743 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 3280 | 3416 | 3280 | ID=MS.gene33951.t1.exon16;Parent=MS.gene33951.t1 |
| 3543 | CDS | 3280 | 3416 | 3280 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 2619 | 2695 | 2619 | ID=MS.gene33951.t1.exon17;Parent=MS.gene33951.t1 |
| 3543 | CDS | 2619 | 2695 | 2619 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 2426 | 2482 | 2426 | ID=MS.gene33951.t1.exon18;Parent=MS.gene33951.t1 |
| 3543 | CDS | 2426 | 2482 | 2426 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 1298 | 1373 | 1298 | ID=MS.gene33951.t1.exon19;Parent=MS.gene33951.t1 |
| 3543 | CDS | 1298 | 1373 | 1298 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| 3543 | exon | 952 | 1025 | 952 | ID=MS.gene33951.t1.exon20;Parent=MS.gene33951.t1 |
| 3543 | CDS | 952 | 1025 | 952 | ID=cds.MS.gene33951.t1;Parent=MS.gene33951.t1 |
| Gene Sequence |
| Protein sequence |
