Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33982.t1 | KEH18022.1 | 63.2 | 405 | 47 | 4 | 1 | 404 | 1 | 304 | 6.20E-122 | 447.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33982.t1 | A0A072TKR8 | 63.2 | 405 | 47 | 4 | 1 | 404 | 1 | 304 | 4.5e-122 | 447.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058870 | MS.gene33982 | 0.846325 | 2.33E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33982.t1 | MTR_8g009990 | 63.210 | 405 | 47 | 4 | 1 | 404 | 1 | 304 | 8.28e-167 | 469 |
| MS.gene33982.t1 | MTR_0186s0120 | 87.705 | 122 | 15 | 0 | 20 | 141 | 1 | 122 | 7.45e-72 | 221 |
| MS.gene33982.t1 | MTR_4g131870 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 1.20e-54 | 176 |
| MS.gene33982.t1 | MTR_1g054565 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 1.20e-54 | 176 |
| MS.gene33982.t1 | MTR_1g050130 | 91.209 | 91 | 8 | 0 | 1 | 91 | 1 | 91 | 6.84e-54 | 174 |
| MS.gene33982.t1 | MTR_3g014770 | 91.209 | 91 | 8 | 0 | 1 | 91 | 1 | 91 | 8.57e-54 | 174 |
| MS.gene33982.t1 | MTR_3g014760 | 32.292 | 192 | 118 | 3 | 22 | 213 | 9 | 188 | 1.87e-29 | 116 |
| MS.gene33982.t1 | MTR_4g131860 | 33.333 | 192 | 122 | 3 | 22 | 213 | 9 | 194 | 2.28e-29 | 116 |
| MS.gene33982.t1 | MTR_7g102530 | 33.333 | 192 | 122 | 3 | 22 | 213 | 9 | 194 | 2.61e-29 | 116 |
| MS.gene33982.t1 | MTR_1g050140 | 33.333 | 192 | 122 | 3 | 22 | 213 | 9 | 194 | 4.19e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 100 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 1.4:-74654695 | MS.gene33982:CDS |
| GTTAATATCTACCAACTTAT+TGG | 0.179369 | 1.4:+74655160 | None:intergenic |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 1.4:-74654600 | MS.gene33982:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 1.4:-74654963 | MS.gene33982:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 1.4:+74654431 | None:intergenic |
| TGAGGGAAAACAAACGAAAA+AGG | 0.283246 | 1.4:-74655316 | MS.gene33982:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 1.4:+74654974 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 1.4:+74654750 | None:intergenic |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 1.4:-74654694 | MS.gene33982:CDS |
| GAGGATATTAAAGGCAAATA+AGG | 0.316331 | 1.4:-74654049 | MS.gene33982:CDS |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 1.4:-74654948 | MS.gene33982:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 1.4:+74654444 | None:intergenic |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 1.4:+74654683 | None:intergenic |
| GGATGATATGAGGATATTAA+AGG | 0.367929 | 1.4:-74654058 | MS.gene33982:CDS |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 1.4:-74654183 | MS.gene33982:CDS |
| AACACAAAGATTTGCTTTCC+CGG | 0.375365 | 1.4:-74654095 | MS.gene33982:CDS |
| TGGTTGCCCAGCCGTATTGC+AGG | 0.381669 | 1.4:-74654580 | MS.gene33982:intron |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 1.4:-74654920 | MS.gene33982:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 1.4:+74654823 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 1.4:+74654000 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 1.4:-74654253 | MS.gene33982:intron |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 1.4:-74655080 | MS.gene33982:CDS |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 1.4:+74654915 | None:intergenic |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 1.4:+74655067 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 1.4:-74654970 | MS.gene33982:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 1.4:+74654445 | None:intergenic |
| TAGGATTTAGAGTAGGCGTT+AGG | 0.437463 | 1.4:-74655004 | MS.gene33982:CDS |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 1.4:-74655057 | MS.gene33982:CDS |
| GGCAAATAAGGTTGACGGTA+GGG | 0.443478 | 1.4:-74654037 | MS.gene33982:CDS |
| ATCTACCAACTTATTGGTAC+GGG | 0.443644 | 1.4:+74655166 | None:intergenic |
| TTCAATACCTGCAATACGGC+TGG | 0.445664 | 1.4:+74654573 | None:intergenic |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 1.4:+74655090 | None:intergenic |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 1.4:+74655138 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 1.4:+74654936 | None:intergenic |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 1.4:-74653946 | MS.gene33982:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 1.4:-74654259 | MS.gene33982:intron |
| AGGTGGGATGCAAGTAGCTT+AGG | 0.478297 | 1.4:-74655023 | MS.gene33982:CDS |
| AATATTCAATACCTGCAATA+CGG | 0.491166 | 1.4:+74654569 | None:intergenic |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 1.4:-74654934 | MS.gene33982:CDS |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 1.4:-74653896 | MS.gene33982:CDS |
| TATCTACCAACTTATTGGTA+CGG | 0.500669 | 1.4:+74655165 | None:intergenic |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 1.4:-74655040 | MS.gene33982:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 1.4:+74654188 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 1.4:+74654397 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 1.4:-74654834 | MS.gene33982:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 1.4:+74654077 | None:intergenic |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 1.4:+74654181 | None:intergenic |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 1.4:-74655071 | MS.gene33982:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 1.4:-74654189 | MS.gene33982:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 1.4:-74653907 | MS.gene33982:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 1.4:-74653928 | MS.gene33982:CDS |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 1.4:+74654439 | None:intergenic |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 1.4:-74654833 | MS.gene33982:CDS |
| TTAAAGGCAAATAAGGTTGA+CGG | 0.541072 | 1.4:-74654042 | MS.gene33982:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.543524 | 1.4:-74655099 | MS.gene33982:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 1.4:-74654068 | MS.gene33982:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 1.4:-74654128 | MS.gene33982:CDS |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 1.4:+74655188 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 1.4:-74653997 | MS.gene33982:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.556553 | 1.4:-74654094 | MS.gene33982:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 1.4:-74654919 | MS.gene33982:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 1.4:-74655039 | MS.gene33982:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 1.4:-74654010 | MS.gene33982:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 1.4:-74654079 | MS.gene33982:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 1.4:+74654076 | None:intergenic |
| AATGCCCCGTACCAATAAGT+TGG | 0.573173 | 1.4:-74655171 | MS.gene33982:CDS |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 1.4:+74654064 | None:intergenic |
| AGGCAAATAAGGTTGACGGT+AGG | 0.575463 | 1.4:-74654038 | MS.gene33982:CDS |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 1.4:-74654124 | MS.gene33982:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 1.4:+74654416 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 1.4:+74654006 | None:intergenic |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 1.4:-74655043 | MS.gene33982:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 1.4:-74654649 | MS.gene33982:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 1.4:-74654847 | MS.gene33982:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 1.4:-74654407 | MS.gene33982:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 1.4:-74653906 | MS.gene33982:CDS |
| AGTAGCTTAGGATTTAGAGT+AGG | 0.598830 | 1.4:-74655011 | MS.gene33982:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 1.4:-74654411 | MS.gene33982:CDS |
| TCAATACCTGCAATACGGCT+GGG | 0.600754 | 1.4:+74654574 | None:intergenic |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 1.4:-74653872 | MS.gene33982:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 1.4:-74654997 | MS.gene33982:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 1.4:-74654003 | MS.gene33982:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 1.4:-74653982 | MS.gene33982:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 1.4:-74654232 | MS.gene33982:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 1.4:-74653929 | MS.gene33982:CDS |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 1.4:-74654480 | MS.gene33982:intron |
| GAACATTGTCTGATGCGCAA+AGG | 0.634154 | 1.4:-74655136 | MS.gene33982:CDS |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 1.4:-74654832 | MS.gene33982:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 1.4:-74653880 | MS.gene33982:CDS |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 1.4:+74654770 | None:intergenic |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 1.4:-74653945 | MS.gene33982:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 1.4:-74653932 | MS.gene33982:CDS |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 1.4:-74654404 | MS.gene33982:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 1.4:+74654958 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 1.4:-74653996 | MS.gene33982:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 1.4:-74654455 | MS.gene33982:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 1.4:-74654693 | MS.gene33982:CDS |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 1.4:+74655095 | None:intergenic |
| TCTACCAACTTATTGGTACG+GGG | 0.719408 | 1.4:+74655167 | None:intergenic |
| AAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 1.4:-74653956 | MS.gene33982:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATAACTGTGTGATTT+CGG | + | chr1.4:74654416-74654435 | None:intergenic | 20.0% |
| !!! | ATGTAATTGTTTGTGTTTTA+TGG | - | chr1.4:74653921-74653940 | MS.gene33982:CDS | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | - | chr1.4:74654679-74654698 | MS.gene33982:CDS | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | - | chr1.4:74654680-74654699 | MS.gene33982:CDS | 20.0% |
| ! | AATATTCAATACCTGCAATA+CGG | + | chr1.4:74654597-74654616 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | - | chr1.4:74654106-74654125 | MS.gene33982:CDS | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | - | chr1.4:74654514-74654533 | MS.gene33982:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | + | chr1.4:74654902-74654921 | None:intergenic | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | - | chr1.4:74654898-74654917 | MS.gene33982:CDS | 25.0% |
| ! | AGTATATTAACTCGGTAAAT+GGG | - | chr1.4:74654835-74654854 | MS.gene33982:CDS | 25.0% |
| ! | GTTAATATCTACCAACTTAT+TGG | + | chr1.4:74654006-74654025 | None:intergenic | 25.0% |
| ! | TAGTATATTAACTCGGTAAA+TGG | - | chr1.4:74654834-74654853 | MS.gene33982:CDS | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | - | chr1.4:74654120-74654139 | MS.gene33982:CDS | 25.0% |
| ! | TTACCGAGTTAATATACTAA+AGG | + | chr1.4:74654833-74654852 | None:intergenic | 25.0% |
| ! | TTGCCTTTAGTATATTAACT+CGG | - | chr1.4:74654827-74654846 | MS.gene33982:CDS | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | - | chr1.4:74654601-74654620 | MS.gene33982:CDS | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | - | chr1.4:74654600-74654619 | MS.gene33982:CDS | 25.0% |
| AAAGTGTAGTAAGATTGATG+CGG | - | chr1.4:74655207-74655226 | MS.gene33982:intron | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | - | chr1.4:74654092-74654111 | MS.gene33982:CDS | 30.0% | |
| AAGCTTGCACATCAAAAAAA+GGG | + | chr1.4:74655018-74655037 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | + | chr1.4:74654192-74654211 | None:intergenic | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | + | chr1.4:74654099-74654118 | None:intergenic | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | - | chr1.4:74655257-74655276 | MS.gene33982:intron | 30.0% | |
| GAGGATATTAAAGGCAAATA+AGG | - | chr1.4:74655114-74655133 | MS.gene33982:CDS | 30.0% | |
| GATACAGTTATACACATTTC+TGG | - | chr1.4:74654563-74654582 | MS.gene33982:intron | 30.0% | |
| GGATGATATGAGGATATTAA+AGG | - | chr1.4:74655105-74655124 | MS.gene33982:CDS | 30.0% | |
| GGTGAAGAGGAAAAAAAAAT+TGG | - | chr1.4:74655304-74655323 | MS.gene33982:CDS | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | - | chr1.4:74654193-74654212 | MS.gene33982:CDS | 30.0% | |
| TAACCTTCGCATTTGAAAAA+AGG | + | chr1.4:74654803-74654822 | None:intergenic | 30.0% | |
| TAAGCTTGCACATCAAAAAA+AGG | + | chr1.4:74655019-74655038 | None:intergenic | 30.0% | |
| TATCTACCAACTTATTGGTA+CGG | + | chr1.4:74654001-74654020 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | + | chr1.4:74654076-74654095 | None:intergenic | 30.0% | |
| TTAAAGGCAAATAAGGTTGA+CGG | - | chr1.4:74655121-74655140 | MS.gene33982:CDS | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | + | chr1.4:74654550-74654569 | None:intergenic | 30.0% |
| ! | TTAATGTGATTAGTTGGTTG+AGG | - | chr1.4:74654904-74654923 | MS.gene33982:CDS | 30.0% |
| ! | TTTTGATGTGCAAGCTTATA+TGG | - | chr1.4:74655021-74655040 | MS.gene33982:CDS | 30.0% |
| !!! | AAACCTTTTTTCAAATGCGA+AGG | - | chr1.4:74654797-74654816 | MS.gene33982:CDS | 30.0% |
| AAGATTGATGCGGATAATGA+TGG | - | chr1.4:74655217-74655236 | MS.gene33982:intron | 35.0% | |
| AAGTTGGATGATGAAGATGT+TGG | - | chr1.4:74655283-74655302 | MS.gene33982:intron | 35.0% | |
| ACCAACTTGAGAATGGTTAA+CGG | + | chr1.4:74654978-74654997 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | - | chr1.4:74654468-74654487 | MS.gene33982:CDS | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | - | chr1.4:74655218-74655237 | MS.gene33982:intron | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | + | chr1.4:74654071-74654090 | None:intergenic | 35.0% | |
| ATATCCTCATATCATCCTCA+AGG | + | chr1.4:74655102-74655121 | None:intergenic | 35.0% | |
| ATCTACCAACTTATTGGTAC+GGG | + | chr1.4:74654000-74654019 | None:intergenic | 35.0% | |
| CATTAACAATTGGACCAAAG+TGG | - | chr1.4:74654752-74654771 | MS.gene33982:CDS | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | - | chr1.4:74654469-74654488 | MS.gene33982:CDS | 35.0% | |
| CGGAAAATATAACACACACA+AGG | + | chr1.4:74654396-74654415 | None:intergenic | 35.0% | |
| CTTATATGGCTGAACATCAA+AGG | - | chr1.4:74655035-74655054 | MS.gene33982:CDS | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | - | chr1.4:74654124-74654143 | MS.gene33982:CDS | 35.0% | |
| GAGGGAAAACAAACGAAAAA+GGG | - | chr1.4:74653848-74653867 | MS.gene33982:CDS | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | - | chr1.4:74654470-74654489 | MS.gene33982:CDS | 35.0% | |
| GGAAAAGCAGAAGAAAATGA+TGG | - | chr1.4:74655256-74655275 | MS.gene33982:intron | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | - | chr1.4:74654683-74654702 | MS.gene33982:CDS | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | - | chr1.4:74654083-74654102 | MS.gene33982:CDS | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | - | chr1.4:74654316-74654335 | MS.gene33982:intron | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | - | chr1.4:74654123-74654142 | MS.gene33982:CDS | 35.0% | |
| TGAGGGAAAACAAACGAAAA+AGG | - | chr1.4:74653847-74653866 | MS.gene33982:CDS | 35.0% | |
| TTTACCGGAAACTAGTGATA+GGG | - | chr1.4:74654244-74654263 | MS.gene33982:CDS | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | - | chr1.4:74655068-74655087 | MS.gene33982:CDS | 35.0% |
| ! | AGAAAATGATGGGATGAAGT+TGG | - | chr1.4:74655267-74655286 | MS.gene33982:intron | 35.0% |
| ! | AGTAGCTTAGGATTTAGAGT+AGG | - | chr1.4:74654152-74654171 | MS.gene33982:CDS | 35.0% |
| ! | GTTTTCCACGCATTAACAAT+TGG | - | chr1.4:74654742-74654761 | MS.gene33982:CDS | 35.0% |
| !! | AACCATTCTCAAGTTGGTAT+TGG | - | chr1.4:74654980-74654999 | MS.gene33982:CDS | 35.0% |
| !! | TAATGATGGGTTGAAAAGTG+AGG | - | chr1.4:74655231-74655250 | MS.gene33982:intron | 35.0% |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | - | chr1.4:74654229-74654248 | MS.gene33982:CDS | 35.0% |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | + | chr1.4:74654938-74654957 | None:intergenic | 35.0% |
| AAAACGCTTAATTGGACCAC+TGG | + | chr1.4:74654727-74654746 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | - | chr1.4:74654756-74654775 | MS.gene33982:CDS | 40.0% | |
| AACAGCAACACCCCAATTAT+AGG | + | chr1.4:74654483-74654502 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | + | chr1.4:74654735-74654754 | None:intergenic | 40.0% | |
| CAATCCTTGAGGATGATATG+AGG | - | chr1.4:74655095-74655114 | MS.gene33982:CDS | 40.0% | |
| CGAAAAAGGGAATGTGTTGT+TGG | - | chr1.4:74653861-74653880 | MS.gene33982:CDS | 40.0% | |
| CTCCAATACCAACTTGAGAA+TGG | + | chr1.4:74654985-74655004 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | - | chr1.4:74654708-74654727 | MS.gene33982:CDS | 40.0% | |
| GCAAACCTAAAGCCAAACAA+AGG | + | chr1.4:74654208-74654227 | None:intergenic | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | + | chr1.4:74653978-74653997 | None:intergenic | 40.0% | |
| GGTAAACACTCTCCTACAAT+AGG | + | chr1.4:74654230-74654249 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | - | chr1.4:74654243-74654262 | MS.gene33982:CDS | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | - | chr1.4:74655039-74655058 | MS.gene33982:CDS | 40.0% | |
| TCTACCAACTTATTGGTACG+GGG | + | chr1.4:74653999-74654018 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | + | chr1.4:74654750-74654769 | None:intergenic | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | + | chr1.4:74654028-74654047 | None:intergenic | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | - | chr1.4:74655069-74655088 | MS.gene33982:CDS | 40.0% |
| ! | CTAACCCTATCACTAGTTTC+CGG | + | chr1.4:74654251-74654270 | None:intergenic | 40.0% |
| ! | CTTAATTGGACCACTGGTTA+GGG | + | chr1.4:74654721-74654740 | None:intergenic | 40.0% |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | - | chr1.4:74654215-74654234 | MS.gene33982:CDS | 40.0% |
| ! | TAGGATTTAGAGTAGGCGTT+AGG | - | chr1.4:74654159-74654178 | MS.gene33982:CDS | 40.0% |
| ! | TGATGAAGATGTTGGTGAAG+AGG | - | chr1.4:74655291-74655310 | MS.gene33982:intron | 40.0% |
| ! | TGATTAGTTGGTTGAGGACT+TGG | - | chr1.4:74654910-74654929 | MS.gene33982:CDS | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | - | chr1.4:74654200-74654219 | MS.gene33982:CDS | 40.0% |
| AACATGACCTCCATCCACTT+TGG | + | chr1.4:74654769-74654788 | None:intergenic | 45.0% | |
| AACTCCGTTCCGATATCTTG+TGG | - | chr1.4:74654064-74654083 | MS.gene33982:CDS | 45.0% | |
| AAGCTGAAGGTCCTTCAAGA+AGG | - | chr1.4:74654329-74654348 | MS.gene33982:intron | 45.0% | |
| AATGCCCCGTACCAATAAGT+TGG | - | chr1.4:74653992-74654011 | MS.gene33982:CDS | 45.0% | |
| AATTGGACCAAAGTGGATGG+AGG | - | chr1.4:74654759-74654778 | MS.gene33982:CDS | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | - | chr1.4:74654330-74654349 | MS.gene33982:intron | 45.0% | |
| AGGCAAATAAGGTTGACGGT+AGG | - | chr1.4:74655125-74655144 | MS.gene33982:CDS | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | - | chr1.4:74655166-74655185 | MS.gene33982:CDS | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | + | chr1.4:74655089-74655108 | None:intergenic | 45.0% | |
| ATGCCAAGTAGCATGGAAGT+AGG | - | chr1.4:74655160-74655179 | MS.gene33982:CDS | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | + | chr1.4:74655090-74655109 | None:intergenic | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | + | chr1.4:74655166-74655185 | None:intergenic | 45.0% | |
| GAACATTGTCTGATGCGCAA+AGG | - | chr1.4:74654027-74654046 | MS.gene33982:CDS | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | - | chr1.4:74654974-74654993 | MS.gene33982:CDS | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | - | chr1.4:74655181-74655200 | MS.gene33982:CDS | 45.0% | |
| GGCAAATAAGGTTGACGGTA+GGG | - | chr1.4:74655126-74655145 | MS.gene33982:CDS | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | - | chr1.4:74654931-74654950 | MS.gene33982:CDS | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | - | chr1.4:74655167-74655186 | MS.gene33982:CDS | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | - | chr1.4:74655153-74655172 | MS.gene33982:CDS | 45.0% | |
| TCAATACCTGCAATACGGCT+GGG | + | chr1.4:74654592-74654611 | None:intergenic | 45.0% | |
| TTCAATACCTGCAATACGGC+TGG | + | chr1.4:74654593-74654612 | None:intergenic | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | + | chr1.4:74655160-74655179 | None:intergenic | 45.0% |
| ! | GCTTAATTGGACCACTGGTT+AGG | + | chr1.4:74654722-74654741 | None:intergenic | 45.0% |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | - | chr1.4:74655234-74655253 | MS.gene33982:intron | 45.0% |
| AGGTGGGATGCAAGTAGCTT+AGG | - | chr1.4:74654140-74654159 | MS.gene33982:CDS | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | + | chr1.4:74654343-74654362 | None:intergenic | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | - | chr1.4:74654331-74654350 | MS.gene33982:intron | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | - | chr1.4:74654166-74654185 | MS.gene33982:CDS | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | - | chr1.4:74655084-74655103 | MS.gene33982:CDS | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | - | chr1.4:74655235-74655254 | MS.gene33982:intron | 50.0% |
| TGGTTGCCCAGCCGTATTGC+AGG | - | chr1.4:74654583-74654602 | MS.gene33982:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74653846 | 74655339 | 74653846 | ID=MS.gene33982 |
| chr1.4 | mRNA | 74653846 | 74655339 | 74653846 | ID=MS.gene33982.t1;Parent=MS.gene33982 |
| chr1.4 | exon | 74655301 | 74655339 | 74655301 | ID=MS.gene33982.t1.exon1;Parent=MS.gene33982.t1 |
| chr1.4 | CDS | 74655301 | 74655339 | 74655301 | ID=cds.MS.gene33982.t1;Parent=MS.gene33982.t1 |
| chr1.4 | exon | 74654581 | 74655210 | 74654581 | ID=MS.gene33982.t1.exon2;Parent=MS.gene33982.t1 |
| chr1.4 | CDS | 74654581 | 74655210 | 74654581 | ID=cds.MS.gene33982.t1;Parent=MS.gene33982.t1 |
| chr1.4 | exon | 74654367 | 74654489 | 74654367 | ID=MS.gene33982.t1.exon3;Parent=MS.gene33982.t1 |
| chr1.4 | CDS | 74654367 | 74654489 | 74654367 | ID=cds.MS.gene33982.t1;Parent=MS.gene33982.t1 |
| chr1.4 | exon | 74653846 | 74654268 | 74653846 | ID=MS.gene33982.t1.exon4;Parent=MS.gene33982.t1 |
| chr1.4 | CDS | 74653846 | 74654268 | 74653846 | ID=cds.MS.gene33982.t1;Parent=MS.gene33982.t1 |
| Gene Sequence |
| Protein sequence |
