Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34021.t1 | XP_003591945.1 | 87.2 | 266 | 4 | 1 | 1 | 236 | 1 | 266 | 3.30E-119 | 438 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34021.t1 | Q9C7C1 | 58.1 | 267 | 79 | 3 | 1 | 236 | 1 | 265 | 3.0e-81 | 303.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34021.t1 | G7I9J9 | 87.2 | 266 | 4 | 1 | 1 | 236 | 1 | 266 | 2.4e-119 | 438.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05087 | MS.gene34021 | -0.818907 | 1.53E-52 | -1.69E-46 |
| MS.gene055339 | MS.gene34021 | 0.845804 | 3.23E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34021.t1 | MTR_1g095530 | 87.594 | 266 | 3 | 1 | 1 | 236 | 1 | 266 | 2.79e-166 | 461 |
| MS.gene34021.t1 | MTR_6g033335 | 67.293 | 266 | 57 | 1 | 1 | 236 | 1 | 266 | 8.18e-127 | 362 |
| MS.gene34021.t1 | MTR_4g061010 | 39.427 | 279 | 123 | 4 | 3 | 235 | 2 | 280 | 3.21e-58 | 187 |
| MS.gene34021.t1 | MTR_4g129670 | 38.224 | 259 | 117 | 3 | 3 | 218 | 2 | 260 | 2.53e-56 | 182 |
| MS.gene34021.t1 | MTR_8g066790 | 39.163 | 263 | 120 | 3 | 5 | 227 | 4 | 266 | 5.58e-54 | 176 |
| MS.gene34021.t1 | MTR_8g101600 | 35.606 | 264 | 128 | 5 | 5 | 226 | 4 | 267 | 2.91e-47 | 159 |
| MS.gene34021.t1 | MTR_2g056130 | 34.749 | 259 | 138 | 4 | 1 | 229 | 1 | 258 | 1.20e-41 | 144 |
| MS.gene34021.t1 | MTR_5g030070 | 37.643 | 263 | 124 | 4 | 5 | 227 | 4 | 266 | 9.14e-40 | 139 |
| MS.gene34021.t1 | MTR_4g112570 | 31.538 | 260 | 133 | 4 | 2 | 217 | 4 | 262 | 7.94e-38 | 134 |
| MS.gene34021.t1 | MTR_8g097280 | 28.514 | 249 | 134 | 3 | 5 | 213 | 6 | 250 | 3.16e-35 | 128 |
| MS.gene34021.t1 | MTR_5g097460 | 28.936 | 235 | 142 | 7 | 3 | 213 | 48 | 281 | 1.59e-19 | 86.7 |
| MS.gene34021.t1 | MTR_5g097450 | 29.665 | 209 | 111 | 6 | 6 | 202 | 9 | 193 | 3.73e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34021.t1 | AT3G12090 | 60.150 | 266 | 73 | 3 | 1 | 235 | 1 | 264 | 1.21e-104 | 305 |
| MS.gene34021.t1 | AT4G23410 | 52.256 | 266 | 95 | 3 | 1 | 235 | 1 | 265 | 2.00e-92 | 275 |
| MS.gene34021.t1 | AT3G45600 | 40.000 | 280 | 120 | 4 | 3 | 235 | 2 | 280 | 1.27e-67 | 211 |
| MS.gene34021.t1 | AT4G28050 | 36.538 | 260 | 123 | 4 | 1 | 218 | 1 | 260 | 8.78e-59 | 188 |
| MS.gene34021.t1 | AT4G30430 | 32.593 | 270 | 140 | 3 | 1 | 228 | 1 | 270 | 3.40e-57 | 184 |
| MS.gene34021.t1 | AT2G23810 | 34.091 | 264 | 131 | 5 | 1 | 221 | 1 | 264 | 1.84e-55 | 180 |
| MS.gene34021.t1 | AT1G18520 | 36.842 | 266 | 122 | 4 | 1 | 220 | 1 | 266 | 1.76e-50 | 167 |
| MS.gene34021.t1 | AT5G60220 | 37.906 | 277 | 126 | 4 | 3 | 233 | 2 | 278 | 2.73e-48 | 163 |
| MS.gene34021.t1 | AT2G19580 | 36.226 | 265 | 128 | 3 | 4 | 227 | 3 | 267 | 5.93e-46 | 155 |
| MS.gene34021.t1 | AT5G46700 | 37.500 | 264 | 125 | 3 | 4 | 227 | 3 | 266 | 8.68e-46 | 155 |
| MS.gene34021.t1 | AT1G63260 | 30.952 | 252 | 128 | 4 | 5 | 216 | 6 | 251 | 3.71e-41 | 142 |
| MS.gene34021.t1 | AT1G63260 | 29.583 | 240 | 129 | 3 | 5 | 204 | 6 | 245 | 3.44e-37 | 133 |
| MS.gene34021.t1 | AT1G63260 | 29.583 | 240 | 129 | 3 | 5 | 204 | 6 | 245 | 3.44e-37 | 133 |
| MS.gene34021.t1 | AT1G63260 | 29.583 | 240 | 129 | 3 | 5 | 204 | 6 | 245 | 7.65e-37 | 132 |
| MS.gene34021.t1 | AT3G45600 | 42.767 | 159 | 86 | 2 | 3 | 156 | 2 | 160 | 2.81e-33 | 120 |
| MS.gene34021.t1 | AT1G63260 | 30.047 | 213 | 109 | 3 | 5 | 177 | 6 | 218 | 4.53e-31 | 115 |
| MS.gene34021.t1 | AT1G63260 | 29.885 | 174 | 90 | 2 | 5 | 146 | 6 | 179 | 3.97e-22 | 91.7 |
| MS.gene34021.t1 | AT2G03840 | 27.004 | 237 | 127 | 8 | 12 | 202 | 23 | 259 | 8.95e-22 | 92.0 |
| MS.gene34021.t1 | AT5G23030 | 28.125 | 256 | 145 | 4 | 1 | 217 | 1 | 256 | 1.23e-19 | 86.3 |
| MS.gene34021.t1 | AT5G57810 | 30.000 | 120 | 59 | 2 | 109 | 203 | 181 | 300 | 2.25e-13 | 69.3 |
Find 61 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGGGTTTGACTATATT+TGG | 0.153305 | 1.4:-74215069 | MS.gene34021:CDS |
| CATAGTCCTGCTCCAATTAT+TGG | 0.212597 | 1.4:+74215258 | None:intergenic |
| CAAACACCACTTCTTGTAAT+AGG | 0.226966 | 1.4:-74215198 | MS.gene34021:CDS |
| TTAGCATCCATACCAATAAT+TGG | 0.238729 | 1.4:-74215270 | MS.gene34021:CDS |
| ATTATAATTTGTACCTGTAT+TGG | 0.306319 | 1.4:+74214838 | None:intergenic |
| GGTTTGACTATATTTGGTTT+TGG | 0.337933 | 1.4:-74215063 | MS.gene34021:CDS |
| GTTACTAATAGTAGCACTAT+TGG | 0.340814 | 1.4:-74215085 | MS.gene34021:CDS |
| CTCTATCATCCATCCATGCT+TGG | 0.349066 | 1.4:-74213688 | MS.gene34021:CDS |
| CAATAATTGGAGCAGGACTA+TGG | 0.354102 | 1.4:-74215257 | MS.gene34021:CDS |
| CTCATAGGGATTTATTCAAT+TGG | 0.355629 | 1.4:-74214492 | MS.gene34021:CDS |
| TTACTAATAGTAGCACTATT+GGG | 0.365406 | 1.4:-74215084 | MS.gene34021:CDS |
| GGTGGAGATGGTTGCATGAT+AGG | 0.367982 | 1.4:-74213737 | MS.gene34021:CDS |
| AACTGCATGCAATTACAATA+TGG | 0.369952 | 1.4:-74214673 | MS.gene34021:CDS |
| TGCTTGGGTGGGTGCTCCAT+AGG | 0.377208 | 1.4:-74213672 | None:intergenic |
| ACTTTCCTCTTGGACCCCTT+TGG | 0.378547 | 1.4:-74214884 | MS.gene34021:CDS |
| CTTGTGACAAACTTTCCTCT+TGG | 0.384482 | 1.4:-74214894 | MS.gene34021:CDS |
| ACCAATGGTAATCCCATCTC+TGG | 0.395454 | 1.4:+74214392 | None:intergenic |
| CTATTACAAGAAGTGGTGTT+TGG | 0.407257 | 1.4:+74215199 | None:intergenic |
| AGGTTCAGTAACACAGTGAT+AGG | 0.407586 | 1.4:-74215315 | MS.gene34021:CDS |
| TAAGAGTGAGAGAAATGTAT+AGG | 0.412153 | 1.4:-74215335 | None:intergenic |
| TTCATGTTGCATGTGCACTA+TGG | 0.430443 | 1.4:-74215128 | MS.gene34021:CDS |
| TTGAAGACATAAGAAGGAAT+TGG | 0.432488 | 1.4:-74214554 | MS.gene34021:CDS |
| GCTGAAACAGATTATCCATA+TGG | 0.446295 | 1.4:-74214441 | MS.gene34021:CDS |
| ATATCATTAGCTGGTTTCAT+TGG | 0.450232 | 1.4:-74215159 | MS.gene34021:CDS |
| CCCATCTCTGGGTCTAACTT+TGG | 0.460653 | 1.4:+74214404 | None:intergenic |
| TCTATCATCCATCCATGCTT+GGG | 0.461153 | 1.4:-74213687 | MS.gene34021:CDS |
| GAATGATATGTCTCCAATAC+AGG | 0.472664 | 1.4:-74214851 | MS.gene34021:intron |
| TCCTGCTCCAATTATTGGTA+TGG | 0.474090 | 1.4:+74215263 | None:intergenic |
| CACTCATAACATAGCAATGT+TGG | 0.475989 | 1.4:+74214600 | None:intergenic |
| GCTTGGGTGGGTGCTCCATA+GGG | 0.477808 | 1.4:-74213671 | None:intergenic |
| CATTCTGCATATAATCCAAA+GGG | 0.480639 | 1.4:+74214869 | None:intergenic |
| TGGGTCTAACTTTGGTCATA+CGG | 0.487577 | 1.4:+74214412 | None:intergenic |
| AAGACTCAGATTGCTACAAA+TGG | 0.488256 | 1.4:-74214632 | MS.gene34021:CDS |
| GTACTTGTGATATCATTAGC+TGG | 0.488688 | 1.4:-74215168 | MS.gene34021:CDS |
| ATCATCCATCCATGCTTGGG+TGG | 0.514364 | 1.4:-74213684 | MS.gene34021:CDS |
| ATAAAACCTATTACAAGAAG+TGG | 0.520418 | 1.4:+74215192 | None:intergenic |
| AGCACCCACCCAAGCATGGA+TGG | 0.531492 | 1.4:+74213679 | None:intergenic |
| TTGTAATTGCATGCAGTTGG+TGG | 0.535222 | 1.4:+74214678 | None:intergenic |
| TCCATACCAATAATTGGAGC+AGG | 0.539612 | 1.4:-74215264 | MS.gene34021:CDS |
| ATGTGCACTATGGTTGTACT+TGG | 0.544797 | 1.4:-74215118 | MS.gene34021:CDS |
| CCCAGAGATGGGATTACCAT+TGG | 0.544941 | 1.4:-74214393 | MS.gene34021:intron |
| TCATCCATCCATGCTTGGGT+GGG | 0.557889 | 1.4:-74213683 | MS.gene34021:CDS |
| ATGGAGCACCCACCCAAGCA+TGG | 0.563143 | 1.4:+74213675 | None:intergenic |
| ATATTGTAATTGCATGCAGT+TGG | 0.563181 | 1.4:+74214675 | None:intergenic |
| GGTTCAGTAACACAGTGATA+GGG | 0.566697 | 1.4:-74215314 | MS.gene34021:CDS |
| GAGTGTGATTCATGCAAAGC+TGG | 0.574954 | 1.4:-74214582 | MS.gene34021:CDS |
| CCCTATGAGCAAAATAAGCA+TGG | 0.576576 | 1.4:+74214506 | None:intergenic |
| GGTGTGACTAGTAAAGGTGG+TGG | 0.578149 | 1.4:-74215042 | MS.gene34021:CDS |
| GAGCAGGACTATGGATGGCA+AGG | 0.579423 | 1.4:-74215248 | MS.gene34021:CDS |
| TCATTCTGCATATAATCCAA+AGG | 0.583877 | 1.4:+74214868 | None:intergenic |
| CCAAAGTTAGACCCAGAGAT+GGG | 0.587191 | 1.4:-74214404 | MS.gene34021:CDS |
| GTGTGCTTGAAGACATAAGA+AGG | 0.590298 | 1.4:-74214560 | MS.gene34021:CDS |
| GAGATGGTTGCATGATAGGA+AGG | 0.591262 | 1.4:-74213733 | MS.gene34021:CDS |
| ACCAAAGTTAGACCCAGAGA+TGG | 0.592463 | 1.4:-74214405 | MS.gene34021:CDS |
| AATTGGAGCAGGACTATGGA+TGG | 0.601063 | 1.4:-74215253 | MS.gene34021:CDS |
| CCAATGGTAATCCCATCTCT+GGG | 0.606465 | 1.4:+74214393 | None:intergenic |
| TTTGGTGTGACTAGTAAAGG+TGG | 0.610196 | 1.4:-74215045 | MS.gene34021:CDS |
| GGTGGTGGTGTAGAAGTGCC+TGG | 0.625849 | 1.4:-74215027 | MS.gene34021:CDS |
| ATAATCCAAAGGGGTCCAAG+AGG | 0.661558 | 1.4:+74214879 | None:intergenic |
| TACTCACTATAAGATCTACC+AGG | 0.665561 | 1.4:+74215009 | None:intergenic |
| ATTCTGCATATAATCCAAAG+GGG | 0.741377 | 1.4:+74214870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATCATATATATTTAT+TGG | + | chr1.4:74214632-74214651 | None:intergenic | 10.0% |
| !!! | TTTTTAAATACCTTTTTTTA+GGG | - | chr1.4:74214772-74214791 | MS.gene34021:intron | 10.0% |
| !!! | TTTTTTAAATACCTTTTTTT+AGG | - | chr1.4:74214771-74214790 | MS.gene34021:intron | 10.0% |
| !! | ATATTTCAAATGATCTAAAT+CGG | - | chr1.4:74215101-74215120 | MS.gene34021:CDS | 15.0% |
| !! | GAATAAAAAAAGTTATACTT+TGG | + | chr1.4:74215051-74215070 | None:intergenic | 15.0% |
| !!! | AATGTATAAATTTCTTTTCA+TGG | - | chr1.4:74215071-74215090 | MS.gene34021:CDS | 15.0% |
| !!! | ACATTCAAAAAATGTTATTT+TGG | + | chr1.4:74214247-74214266 | None:intergenic | 15.0% |
| !!! | ACTATAAAGAATTGTATTTT+AGG | - | chr1.4:74214069-74214088 | MS.gene34021:intron | 15.0% |
| !!! | CTATAAAGAATTGTATTTTA+GGG | - | chr1.4:74214070-74214089 | MS.gene34021:intron | 15.0% |
| !!! | TATATATTTTTACCATTTCT+TGG | + | chr1.4:74215185-74215204 | None:intergenic | 15.0% |
| !! | AATTGATTAATGCTAAGTTA+TGG | - | chr1.4:74214269-74214288 | MS.gene34021:intron | 20.0% |
| !! | CATAATTATTGATAAGCTTA+TGG | - | chr1.4:74214735-74214754 | MS.gene34021:intron | 20.0% |
| !! | GTATTTAAATCCCTAAAAAA+AGG | + | chr1.4:74214785-74214804 | None:intergenic | 20.0% |
| !! | TATTTCAAATGATCTAAATC+GGG | - | chr1.4:74215102-74215121 | MS.gene34021:CDS | 20.0% |
| !! | TCAATGACATTAAATTACTT+GGG | + | chr1.4:74214820-74214839 | None:intergenic | 20.0% |
| !! | TTCAATGACATTAAATTACT+TGG | + | chr1.4:74214821-74214840 | None:intergenic | 20.0% |
| !!! | AAAAAACATCCTTTTTGTAA+AGG | - | chr1.4:74214839-74214858 | MS.gene34021:intron | 20.0% |
| !!! | AAAAACATCCTTTTTGTAAA+GGG | - | chr1.4:74214840-74214859 | MS.gene34021:intron | 20.0% |
| !!! | ATTATAATTTGTACCTGTAT+TGG | + | chr1.4:74214159-74214178 | None:intergenic | 20.0% |
| ! | ACAATGAAACTTAACTTAGT+TGG | + | chr1.4:74214939-74214958 | None:intergenic | 25.0% |
| ! | ATAAAACCTATTACAAGAAG+TGG | + | chr1.4:74213805-74213824 | None:intergenic | 25.0% |
| ! | ATATTTATTGGACTTACCAA+TGG | + | chr1.4:74214620-74214639 | None:intergenic | 25.0% |
| ! | CAATGACATTAAATTACTTG+GGG | + | chr1.4:74214819-74214838 | None:intergenic | 25.0% |
| ! | CCTATAAATTAGATTTACTC+AGG | - | chr1.4:74214662-74214681 | MS.gene34021:CDS | 25.0% |
| ! | CCTGAGTAAATCTAATTTAT+AGG | + | chr1.4:74214665-74214684 | None:intergenic | 25.0% |
| ! | TTACTAATAGTAGCACTATT+GGG | - | chr1.4:74213910-74213929 | MS.gene34021:intron | 25.0% |
| ! | TTTATACAAGAACCAAGAAA+TGG | - | chr1.4:74215170-74215189 | MS.gene34021:CDS | 25.0% |
| ! | TTTATAGTATTCCAATAACG+TGG | + | chr1.4:74214057-74214076 | None:intergenic | 25.0% |
| !! | AAAACATCCTTTTTGTAAAG+GGG | - | chr1.4:74214841-74214860 | MS.gene34021:intron | 25.0% |
| AACTGCATGCAATTACAATA+TGG | - | chr1.4:74214321-74214340 | MS.gene34021:intron | 30.0% | |
| AAGTTATGGTTAATGTAGTC+AGG | - | chr1.4:74214283-74214302 | MS.gene34021:intron | 30.0% | |
| ATATTGTAATTGCATGCAGT+TGG | + | chr1.4:74214322-74214341 | None:intergenic | 30.0% | |
| ATCTTACAGATTATTCACCT+TGG | - | chr1.4:74214010-74214029 | MS.gene34021:intron | 30.0% | |
| ATTCTGCATATAATCCAAAG+GGG | + | chr1.4:74214127-74214146 | None:intergenic | 30.0% | |
| CATTCTGCATATAATCCAAA+GGG | + | chr1.4:74214128-74214147 | None:intergenic | 30.0% | |
| CTATTGGGTTTGACTATATT+TGG | - | chr1.4:74213925-74213944 | MS.gene34021:intron | 30.0% | |
| CTCATAGGGATTTATTCAAT+TGG | - | chr1.4:74214502-74214521 | MS.gene34021:CDS | 30.0% | |
| GAATACAAAATCCACGTTAT+TGG | - | chr1.4:74214043-74214062 | MS.gene34021:intron | 30.0% | |
| GTTACTAATAGTAGCACTAT+TGG | - | chr1.4:74213909-74213928 | MS.gene34021:intron | 30.0% | |
| TATTGATCCCCTTTACAAAA+AGG | + | chr1.4:74214851-74214870 | None:intergenic | 30.0% | |
| TCATTCTGCATATAATCCAA+AGG | + | chr1.4:74214129-74214148 | None:intergenic | 30.0% | |
| TTAGCATCCATACCAATAAT+TGG | - | chr1.4:74213724-74213743 | MS.gene34021:CDS | 30.0% | |
| TTGAAGACATAAGAAGGAAT+TGG | - | chr1.4:74214440-74214459 | MS.gene34021:CDS | 30.0% | |
| ! | ATATCATTAGCTGGTTTCAT+TGG | - | chr1.4:74213835-74213854 | MS.gene34021:intron | 30.0% |
| ! | TGTATTCTTTTCTTCAACCA+AGG | + | chr1.4:74214030-74214049 | None:intergenic | 30.0% |
| !! | GGTTTGACTATATTTGGTTT+TGG | - | chr1.4:74213931-74213950 | MS.gene34021:intron | 30.0% |
| !!! | TGTTATGTGCTTTTTTCAAC+AGG | - | chr1.4:74215236-74215255 | MS.gene34021:CDS | 30.0% |
| AAGACTCAGATTGCTACAAA+TGG | - | chr1.4:74214362-74214381 | MS.gene34021:intron | 35.0% | |
| ATTCCATGTGGCAAAAGTAA+AGG | + | chr1.4:74215133-74215152 | None:intergenic | 35.0% | |
| CAAACACCACTTCTTGTAAT+AGG | - | chr1.4:74213796-74213815 | MS.gene34021:intron | 35.0% | |
| CACTCATAACATAGCAATGT+TGG | + | chr1.4:74214397-74214416 | None:intergenic | 35.0% | |
| CTATTACAAGAAGTGGTGTT+TGG | + | chr1.4:74213798-74213817 | None:intergenic | 35.0% | |
| GAATGATATGTCTCCAATAC+AGG | - | chr1.4:74214143-74214162 | MS.gene34021:intron | 35.0% | |
| GCTGAAACAGATTATCCATA+TGG | - | chr1.4:74214553-74214572 | MS.gene34021:CDS | 35.0% | |
| GTACTTGTGATATCATTAGC+TGG | - | chr1.4:74213826-74213845 | MS.gene34021:intron | 35.0% | |
| TACTCACTATAAGATCTACC+AGG | + | chr1.4:74213988-74214007 | None:intergenic | 35.0% | |
| ! | TACTTTTGCCACATGGAATT+GGG | - | chr1.4:74215134-74215153 | MS.gene34021:CDS | 35.0% |
| !! | TTACCTTTACTTTTGCCACA+TGG | - | chr1.4:74215127-74215146 | MS.gene34021:CDS | 35.0% |
| !! | TTACTTTTGCCACATGGAAT+TGG | - | chr1.4:74215133-74215152 | MS.gene34021:CDS | 35.0% |
| !!! | ACCATGCTTATTTTGCTCAT+AGG | - | chr1.4:74214487-74214506 | MS.gene34021:CDS | 35.0% |
| !!! | CCATGCTTATTTTGCTCATA+GGG | - | chr1.4:74214488-74214507 | MS.gene34021:CDS | 35.0% |
| !!! | TATGTGCTTTTTTCAACAGG+TGG | - | chr1.4:74215239-74215258 | MS.gene34021:CDS | 35.0% |
| ACATGGAATTGGGATTTGGA+GGG | - | chr1.4:74215144-74215163 | MS.gene34021:CDS | 40.0% | |
| AGGTTCAGTAACACAGTGAT+AGG | - | chr1.4:74213679-74213698 | MS.gene34021:CDS | 40.0% | |
| ATGTGCACTATGGTTGTACT+TGG | - | chr1.4:74213876-74213895 | MS.gene34021:intron | 40.0% | |
| CAATAATTGGAGCAGGACTA+TGG | - | chr1.4:74213737-74213756 | MS.gene34021:CDS | 40.0% | |
| CATAGTCCTGCTCCAATTAT+TGG | + | chr1.4:74213739-74213758 | None:intergenic | 40.0% | |
| CCCTATGAGCAAAATAAGCA+TGG | + | chr1.4:74214491-74214510 | None:intergenic | 40.0% | |
| CCTACACCAAAAAAGGTTGT+AGG | + | chr1.4:74214904-74214923 | None:intergenic | 40.0% | |
| CGTTTCACCTACACCAAAAA+AGG | + | chr1.4:74214911-74214930 | None:intergenic | 40.0% | |
| CTTGTGACAAACTTTCCTCT+TGG | - | chr1.4:74214100-74214119 | MS.gene34021:intron | 40.0% | |
| GGTTCAGTAACACAGTGATA+GGG | - | chr1.4:74213680-74213699 | MS.gene34021:CDS | 40.0% | |
| GTGTGCTTGAAGACATAAGA+AGG | - | chr1.4:74214434-74214453 | MS.gene34021:CDS | 40.0% | |
| GTTGTAGGTGAGTCATGAAA+CGG | + | chr1.4:74214889-74214908 | None:intergenic | 40.0% | |
| TCCATACCAATAATTGGAGC+AGG | - | chr1.4:74213730-74213749 | MS.gene34021:CDS | 40.0% | |
| TCCTGCTCCAATTATTGGTA+TGG | + | chr1.4:74213734-74213753 | None:intergenic | 40.0% | |
| TCTATCATCCATCCATGCTT+GGG | - | chr1.4:74215307-74215326 | MS.gene34021:CDS | 40.0% | |
| TGAGTCATGAAACGGAAAAG+TGG | + | chr1.4:74214881-74214900 | None:intergenic | 40.0% | |
| TGGGTCTAACTTTGGTCATA+CGG | + | chr1.4:74214585-74214604 | None:intergenic | 40.0% | |
| TTCATGTTGCATGTGCACTA+TGG | - | chr1.4:74213866-74213885 | MS.gene34021:intron | 40.0% | |
| TTGTAATTGCATGCAGTTGG+TGG | + | chr1.4:74214319-74214338 | None:intergenic | 40.0% | |
| ! | GTCATACGGTTTTCACCATA+TGG | + | chr1.4:74214571-74214590 | None:intergenic | 40.0% |
| ! | TTTGGTGTGACTAGTAAAGG+TGG | - | chr1.4:74213949-74213968 | MS.gene34021:intron | 40.0% |
| !! | GGTTTTGGTGTGACTAGTAA+AGG | - | chr1.4:74213946-74213965 | MS.gene34021:intron | 40.0% |
| !!! | CCTACAACCTTTTTTGGTGT+AGG | - | chr1.4:74214901-74214920 | MS.gene34021:CDS | 40.0% |
| !!! | CTTTTTTCAACAGGTGGAGA+TGG | - | chr1.4:74215245-74215264 | MS.gene34021:CDS | 40.0% |
| !!! | GACTCACCTACAACCTTTTT+TGG | - | chr1.4:74214895-74214914 | MS.gene34021:CDS | 40.0% |
| AATTGGAGCAGGACTATGGA+TGG | - | chr1.4:74213741-74213760 | MS.gene34021:intron | 45.0% | |
| ACCAAAGTTAGACCCAGAGA+TGG | - | chr1.4:74214589-74214608 | MS.gene34021:CDS | 45.0% | |
| ACCAATGGTAATCCCATCTC+TGG | + | chr1.4:74214605-74214624 | None:intergenic | 45.0% | |
| ATAATCCAAAGGGGTCCAAG+AGG | + | chr1.4:74214118-74214137 | None:intergenic | 45.0% | |
| CACATGGAATTGGGATTTGG+AGG | - | chr1.4:74215143-74215162 | MS.gene34021:CDS | 45.0% | |
| CCAAAGTTAGACCCAGAGAT+GGG | - | chr1.4:74214590-74214609 | MS.gene34021:CDS | 45.0% | |
| CCAATGGTAATCCCATCTCT+GGG | + | chr1.4:74214604-74214623 | None:intergenic | 45.0% | |
| CTCCAAATCCCAATTCCATG+TGG | + | chr1.4:74215145-74215164 | None:intergenic | 45.0% | |
| CTCTATCATCCATCCATGCT+TGG | - | chr1.4:74215306-74215325 | MS.gene34021:CDS | 45.0% | |
| GAGATGGTTGCATGATAGGA+AGG | - | chr1.4:74215261-74215280 | MS.gene34021:CDS | 45.0% | |
| GAGTGTGATTCATGCAAAGC+TGG | - | chr1.4:74214412-74214431 | MS.gene34021:CDS | 45.0% | |
| TGCCACATGGAATTGGGATT+TGG | - | chr1.4:74215140-74215159 | MS.gene34021:CDS | 45.0% | |
| !! | TTAAAAAAAATAAAGTTATT+AGG | - | chr1.4:74215010-74215029 | MS.gene34021:intron | 5.0% |
| ACTTTCCTCTTGGACCCCTT+TGG | - | chr1.4:74214110-74214129 | MS.gene34021:intron | 50.0% | |
| ATCATCCATCCATGCTTGGG+TGG | - | chr1.4:74215310-74215329 | MS.gene34021:CDS | 50.0% | |
| CCCAGAGATGGGATTACCAT+TGG | - | chr1.4:74214601-74214620 | MS.gene34021:CDS | 50.0% | |
| CCCATCTCTGGGTCTAACTT+TGG | + | chr1.4:74214593-74214612 | None:intergenic | 50.0% | |
| GGTGGAGATGGTTGCATGAT+AGG | - | chr1.4:74215257-74215276 | MS.gene34021:CDS | 50.0% | |
| GGTGTGACTAGTAAAGGTGG+TGG | - | chr1.4:74213952-74213971 | MS.gene34021:intron | 50.0% | |
| TCATCCATCCATGCTTGGGT+GGG | - | chr1.4:74215311-74215330 | MS.gene34021:CDS | 50.0% | |
| GAGCAGGACTATGGATGGCA+AGG | - | chr1.4:74213746-74213765 | MS.gene34021:intron | 55.0% | |
| AGCACCCACCCAAGCATGGA+TGG | + | chr1.4:74215318-74215337 | None:intergenic | 60.0% | |
| ! | ATGGAGCACCCACCCAAGCA+TGG | + | chr1.4:74215322-74215341 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGTAGAAGTGCC+TGG | - | chr1.4:74213967-74213986 | MS.gene34021:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74213673 | 74215343 | 74213673 | ID=MS.gene34021 |
| chr1.4 | mRNA | 74213673 | 74215343 | 74213673 | ID=MS.gene34021.t1;Parent=MS.gene34021 |
| chr1.4 | exon | 74215016 | 74215343 | 74215016 | ID=MS.gene34021.t1.exon1;Parent=MS.gene34021.t1 |
| chr1.4 | CDS | 74215016 | 74215343 | 74215016 | ID=cds.MS.gene34021.t1;Parent=MS.gene34021.t1 |
| chr1.4 | exon | 74214852 | 74214925 | 74214852 | ID=MS.gene34021.t1.exon2;Parent=MS.gene34021.t1 |
| chr1.4 | CDS | 74214852 | 74214925 | 74214852 | ID=cds.MS.gene34021.t1;Parent=MS.gene34021.t1 |
| chr1.4 | exon | 74214394 | 74214715 | 74214394 | ID=MS.gene34021.t1.exon3;Parent=MS.gene34021.t1 |
| chr1.4 | CDS | 74214394 | 74214715 | 74214394 | ID=cds.MS.gene34021.t1;Parent=MS.gene34021.t1 |
| chr1.4 | exon | 74213673 | 74213758 | 74213673 | ID=MS.gene34021.t1.exon4;Parent=MS.gene34021.t1 |
| chr1.4 | CDS | 74213673 | 74213758 | 74213673 | ID=cds.MS.gene34021.t1;Parent=MS.gene34021.t1 |
| Gene Sequence |
| Protein sequence |
