AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34193

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34193.t1 MTR_4g005090 98.000 500 8 1 1 500 2 499 0.0 986
MS.gene34193.t1 MTR_2g081930 28.132 455 276 17 55 495 106 523 3.25e-31 127
MS.gene34193.t1 MTR_4g081490 27.083 432 256 16 80 500 63 446 1.79e-27 115
MS.gene34193.t1 MTR_2g081950 27.187 423 254 18 82 490 18 400 7.48e-25 107
MS.gene34193.t1 MTR_8g447340 26.190 462 270 18 57 500 112 520 6.65e-19 90.1
MS.gene34193.t1 MTR_3g098360 70.370 54 16 0 426 479 72 125 9.65e-19 82.8
MS.gene34193.t1 MTR_5g075300 22.318 466 293 15 58 489 47 477 2.29e-17 85.1
MS.gene34193.t1 MTR_7g446340 24.138 464 271 18 58 489 83 497 1.11e-16 83.2
MS.gene34193.t1 MTR_6g007340 24.138 464 271 18 58 489 83 497 1.11e-16 83.2
MS.gene34193.t1 MTR_4g072030 24.018 433 275 15 82 489 79 482 2.68e-15 79.0
MS.gene34193.t1 MTR_8g077890 22.926 458 300 15 58 489 47 477 3.18e-15 78.6
MS.gene34193.t1 MTR_2g049020 25.856 263 183 7 6 260 1 259 1.10e-14 77.0
MS.gene34193.t1 MTR_1g074940 23.404 517 302 23 29 487 20 500 2.06e-14 75.9
MS.gene34193.t1 MTR_8g103500 24.213 413 240 13 58 439 46 416 7.21e-14 74.3
MS.gene34193.t1 MTR_3g084110 30.052 193 131 3 65 254 66 257 9.78e-14 73.9
MS.gene34193.t1 MTR_3g116240 22.294 462 298 12 58 489 56 486 2.58e-13 72.4
MS.gene34193.t1 MTR_7g082270 26.761 213 135 6 69 271 106 307 3.61e-13 72.0
MS.gene34193.t1 MTR_7g082270 26.923 182 114 4 69 241 106 277 5.55e-13 71.2
MS.gene34193.t1 MTR_6g088450 21.951 451 294 13 58 485 86 501 1.85e-12 69.7
MS.gene34193.t1 MTR_4g013205 28.643 199 118 5 69 258 77 260 2.31e-12 69.3
MS.gene34193.t1 MTR_1g116660 29.167 168 115 3 90 254 98 264 3.23e-12 68.9
MS.gene34193.t1 MTR_4g069500 22.936 436 287 14 81 493 31 440 3.87e-12 68.6
MS.gene34193.t1 MTR_4g069500 22.706 436 288 13 81 493 81 490 5.99e-12 68.2
MS.gene34193.t1 MTR_6g087910 27.650 217 132 6 57 263 79 280 7.50e-12 67.8
MS.gene34193.t1 MTR_7g005910 28.144 167 116 3 88 251 94 259 3.51e-11 65.9
MS.gene34193.t1 MTR_7g094450 26.368 201 143 3 57 256 67 263 4.69e-11 65.5
MS.gene34193.t1 MTR_2g013310 24.631 203 139 4 58 256 8 200 4.95e-11 65.1
MS.gene34193.t1 MTR_2g013310 24.631 203 139 4 58 256 81 273 5.53e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34193.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene34193.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene34193.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene34193.t1 AT3G13050 66.734 493 159 4 9 496 2 494 0.0 606
MS.gene34193.t1 AT3G20660 26.007 546 298 20 4 498 24 514 4.44e-32 129
MS.gene34193.t1 AT3G18830 22.951 427 291 10 81 489 87 493 3.96e-17 84.7
MS.gene34193.t1 AT2G16130 24.464 466 289 15 58 492 54 487 1.62e-16 82.8
MS.gene34193.t1 AT1G67300 25.781 384 226 10 69 436 92 432 7.44e-16 80.5
MS.gene34193.t1 AT2G16120 24.406 463 287 15 58 489 54 484 1.37e-15 79.7
MS.gene34193.t1 AT1G73220 23.207 474 284 17 52 500 113 531 1.44e-15 79.7
MS.gene34193.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.21e-15 78.2
MS.gene34193.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.21e-15 78.2
MS.gene34193.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.39e-15 77.8
MS.gene34193.t1 AT1G67300 25.849 383 226 10 69 436 92 431 4.39e-15 77.8
MS.gene34193.t1 AT1G67300 25.936 374 219 10 69 427 92 422 9.50e-15 76.6
MS.gene34193.t1 AT1G67300 25.936 374 219 10 69 427 92 422 9.50e-15 76.6
MS.gene34193.t1 AT1G79820 28.740 254 142 9 69 310 95 321 1.02e-14 76.6
MS.gene34193.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.01e-14 74.7
MS.gene34193.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.12e-14 74.7
MS.gene34193.t1 AT1G79820 28.780 205 121 6 69 263 95 284 5.12e-14 74.7
MS.gene34193.t1 AT2G20780 24.318 440 252 18 81 489 106 495 8.00e-14 74.3
MS.gene34193.t1 AT2G20780 24.318 440 252 18 81 489 48 437 1.03e-13 73.6
MS.gene34193.t1 AT1G79360 25.053 475 266 19 57 498 98 515 1.04e-13 73.9
MS.gene34193.t1 AT1G79410 22.609 460 292 15 53 499 99 507 1.79e-13 73.2
MS.gene34193.t1 AT1G76430 19.963 536 326 15 29 497 18 517 3.79e-13 72.0
MS.gene34193.t1 AT1G16390 25.821 457 260 18 57 492 106 504 4.01e-12 68.9
MS.gene34193.t1 AT5G43360 21.639 476 271 19 29 443 20 454 5.58e-12 68.6
MS.gene34193.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene34193.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene34193.t1 AT5G16150 26.994 163 115 3 69 228 146 307 3.04e-11 66.2
MS.gene34193.t1 AT2G18480 23.846 390 232 14 81 439 73 428 4.08e-11 65.9

Find 123 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGTTGACCTTGATAATT+TGG 0.146854 4.3:-89863143 None:intergenic
CAAGGTCAACCCTTCTATTA+TGG 0.150801 4.3:+89863152 MS.gene34193:CDS
GTAATTGTAGCTCTTGTTTC+AGG 0.165395 4.3:+89864462 MS.gene34193:CDS
TTCTCTGTCTGCAATTTATC+TGG 0.184428 4.3:-89863256 None:intergenic
AAAGGAATGATTTCTAATTT+AGG 0.203260 4.3:+89863088 MS.gene34193:CDS
ACAAGCAAGGAGACATAATT+TGG 0.223234 4.3:-89861039 None:intergenic
ACACAGTATCTTGCAGTTCT+TGG 0.248615 4.3:-89864521 None:intergenic
GATGAAGCTCTTATAACATT+AGG 0.282008 4.3:+89860739 MS.gene34193:CDS
TCCCTTGTTGGTCTTGGTTT+GGG 0.287217 4.3:+89861069 MS.gene34193:CDS
TTCCCTTGTTGGTCTTGGTT+TGG 0.301151 4.3:+89861068 MS.gene34193:CDS
GCTCTTATAACATTAGGTTT+TGG 0.301990 4.3:+89860745 MS.gene34193:CDS
CAATTTGATTGTCAGAAATA+AGG 0.308448 4.3:-89862991 None:intergenic
AACTGAAGCAACTAACGTTT+TGG 0.312177 4.3:+89862925 MS.gene34193:CDS
AGGCCCGTTGTTAGGTCTTC+AGG 0.323940 4.3:-89863523 None:intergenic
TTTCGTTCCCTTGTTGGTCT+TGG 0.331910 4.3:+89861063 MS.gene34193:CDS
GAGACAATAGCAAGACTAAA+TGG 0.335400 4.3:+89862947 MS.gene34193:CDS
AAATTAGAAATCATTCCTTT+AGG 0.339113 4.3:-89863085 None:intergenic
CAAATAAAAGGCCCGTTGTT+AGG 0.349459 4.3:-89863531 None:intergenic
CCTTTCAAGCATAGGTATCT+TGG 0.351124 4.3:-89862896 None:intergenic
TCAGGCAGATAGAATGTTAA+TGG 0.357682 4.3:-89863505 None:intergenic
ATATGCGAGCTCCAAATAAA+AGG 0.364937 4.3:-89863543 None:intergenic
AAAACACTGCCCATAATAGA+AGG 0.371337 4.3:-89863162 None:intergenic
ACCATCCAGGTACCTCTATT+AGG 0.375794 4.3:-89861138 None:intergenic
CACCTTTGTAACTTACATCC+TGG 0.379885 4.3:-89863282 None:intergenic
CAAGCAAGGAGACATAATTT+GGG 0.393596 4.3:-89861038 None:intergenic
AAGGTCAACCCTTCTATTAT+GGG 0.403508 4.3:+89863153 MS.gene34193:CDS
ATGATGTTACTCTCATTTGT+AGG 0.412623 4.3:+89860829 MS.gene34193:CDS
TTCTTTCCGTTTGAGACCAT+GGG 0.417476 4.3:+89864498 MS.gene34193:CDS
AGGGTTGACCTTGATAATTT+GGG 0.419441 4.3:-89863142 None:intergenic
GCAGATTGTGATGCCAAGAC+TGG 0.425745 4.3:+89862796 MS.gene34193:intron
TCGTTTACGCCGGCATTGGT+TGG 0.434274 4.3:+89860788 MS.gene34193:CDS
GCAAGCTCAGTGGGTAGAAT+TGG 0.439186 4.3:+89864366 MS.gene34193:CDS
TGTTAATTGGTGCTTACTCA+TGG 0.439266 4.3:+89860926 MS.gene34193:CDS
GTTGGTCTTGGTTTGGGAGG+CGG 0.439641 4.3:+89861075 MS.gene34193:CDS
GTTCTTTCCGTTTGAGACCA+TGG 0.452361 4.3:+89864497 MS.gene34193:CDS
TTCCATGCAGATTGAACTGC+AGG 0.455398 4.3:-89860853 None:intergenic
CATAGGTATCTTGGTGACTC+TGG 0.463933 4.3:-89862887 None:intergenic
GATCAACATGGAAGGAGAAA+AGG 0.467204 4.3:+89860961 MS.gene34193:CDS
CAGGCAGATAGAATGTTAAT+GGG 0.472478 4.3:-89863504 None:intergenic
ACCTTTGTAACTTACATCCT+GGG 0.474759 4.3:-89863281 None:intergenic
ACCTTGATAATTTGGGTGAA+AGG 0.476208 4.3:-89863135 None:intergenic
GTAAGCACCAATTAACATTC+CGG 0.476951 4.3:-89860920 None:intergenic
AAGAAGGAAAGATGTGGGAA+GGG 0.478654 4.3:-89862846 None:intergenic
AATACATTATTATAGATGAC+AGG 0.482451 4.3:+89860673 None:intergenic
ATCTTGCAGTTCTTGGCCCA+TGG 0.491779 4.3:-89864514 None:intergenic
GTTAATTGGTGCTTACTCAT+GGG 0.492775 4.3:+89860927 MS.gene34193:CDS
GTTCTCGTTTACGCCGGCAT+TGG 0.492913 4.3:+89860784 MS.gene34193:CDS
TTGTTCTACCTTTCAAGCAT+AGG 0.498229 4.3:-89862904 None:intergenic
TTCTGAAATCCAACCAATGC+CGG 0.499012 4.3:-89860797 None:intergenic
TCCTTTCACCCAAATTATCA+AGG 0.499337 4.3:+89863134 MS.gene34193:CDS
TCTCTGTCTGCAATTTATCT+GGG 0.508969 4.3:-89863255 None:intergenic
CTGCCTGAAGACCTAACAAC+GGG 0.512273 4.3:+89863520 MS.gene34193:CDS
CCAAGATACCTATGCTTGAA+AGG 0.516263 4.3:+89862896 MS.gene34193:CDS
TGGTTGGATTTCAGAAGCAA+TGG 0.517985 4.3:+89860804 MS.gene34193:CDS
AGCTCAGTGGGTAGAATTGG+TGG 0.521900 4.3:+89864369 MS.gene34193:CDS
AGCCATCTCCAACCCAGTCT+TGG 0.527031 4.3:-89862809 None:intergenic
TTTGTTCCCGCTCCTAATAG+AGG 0.528407 4.3:+89861126 MS.gene34193:CDS
GCTACTGTTACTGCTACTGC+CGG 0.538066 4.3:+89860997 MS.gene34193:CDS
GAAGAAGGAAAGATGTGGGA+AGG 0.538946 4.3:-89862847 None:intergenic
TCTTGGCCCATGGTCTCAAA+CGG 0.539054 4.3:-89864504 None:intergenic
TATGAAACTTTCTTGATGAG+AGG 0.540801 4.3:-89860881 None:intergenic
CCGCTCCTAATAGAGGTACC+TGG 0.542053 4.3:+89861133 MS.gene34193:CDS
GTCGGAGTCGCAAGCTCAGT+GGG 0.542417 4.3:+89864357 MS.gene34193:CDS
AGTAAAACCGTGTCTTCTGA+AGG 0.542673 4.3:-89863034 None:intergenic
CTTGTTGGTCTTGGTTTGGG+AGG 0.545241 4.3:+89861072 MS.gene34193:CDS
AACAGAAGAAGGAAAGATGT+GGG 0.548715 4.3:-89862851 None:intergenic
TGGTGGAATGTTATGTCCAT+TGG 0.548940 4.3:+89864386 MS.gene34193:CDS
TTATGTCCATTGGTAGCAGT+GGG 0.549840 4.3:+89864396 MS.gene34193:CDS
ACCGGAAAACACAACCATCC+AGG 0.553864 4.3:-89861151 None:intergenic
GATAGAATGTTAATGGGAGA+AGG 0.555946 4.3:-89863498 None:intergenic
AGTGAAGTTGAATCTCCTAA+AGG 0.556412 4.3:+89863070 MS.gene34193:CDS
GGAATGATTTCTAATTTAGG+TGG 0.556564 4.3:+89863091 MS.gene34193:CDS
ACCAAGTTTATCCACTGCTA+CGG 0.557857 4.3:-89863431 None:intergenic
TGAGCTTGCGACTCCGACAC+CGG 0.560176 4.3:-89864352 None:intergenic
CAGGTACCTCTATTAGGAGC+GGG 0.563187 4.3:-89861132 None:intergenic
GTTATGTCCATTGGTAGCAG+TGG 0.563497 4.3:+89864395 MS.gene34193:CDS
CTCCCAAACCAAGACCAACA+AGG 0.572336 4.3:-89861071 None:intergenic
AGAAACCACGAGGACAAGAC+AGG 0.574791 4.3:-89861099 None:intergenic
GCCGTAGCAGTGGATAAACT+TGG 0.575560 4.3:+89863430 MS.gene34193:CDS
GAGCTACAATTACAAACAGA+AGG 0.576404 4.3:-89864452 None:intergenic
ATGACAGGGGAAGAAGTTGA+AGG 0.577013 4.3:+89860688 MS.gene34193:CDS
CAGATTGTGATGCCAAGACT+GGG 0.577346 4.3:+89862797 MS.gene34193:intron
ACGGCTGACAAGAGGAGCCC+AGG 0.577551 4.3:-89863412 None:intergenic
AACTTTCTTGATGAGAGGAA+AGG 0.579795 4.3:-89860876 None:intergenic
AAACAGAAGAAGGAAAGATG+TGG 0.582964 4.3:-89862852 None:intergenic
TCCCAAACCAAGACCAACAA+GGG 0.583537 4.3:-89861070 None:intergenic
CCTCTTGTCAGCCGTAGCAG+TGG 0.584748 4.3:+89863420 MS.gene34193:CDS
TGCCAAGACTGGGTTGGAGA+TGG 0.585381 4.3:+89862807 MS.gene34193:CDS
TTAATTGGTGCTTACTCATG+GGG 0.587279 4.3:+89860928 MS.gene34193:CDS
ACTAAACCCACTGCTACCAA+TGG 0.588885 4.3:-89864402 None:intergenic
TGTCGGAGTCGCAAGCTCAG+TGG 0.589287 4.3:+89864356 MS.gene34193:CDS
GTCCTGCAGTTCAATCTGCA+TGG 0.595195 4.3:+89860851 MS.gene34193:CDS
CCCACATCAGTCAGAACCAC+CGG 0.596858 4.3:+89864333 MS.gene34193:CDS
TCCCAGGATGTAAGTTACAA+AGG 0.600242 4.3:+89863280 MS.gene34193:CDS
ACCGGTGGTTCTGACTGATG+TGG 0.601322 4.3:-89864334 None:intergenic
GCGGTCCTGTCTTGTCCTCG+TGG 0.604240 4.3:+89861094 MS.gene34193:CDS
TTGTTTCTGATCAACATGGA+AGG 0.605867 4.3:+89860953 MS.gene34193:CDS
CCACTGCTACGGCTGACAAG+AGG 0.607873 4.3:-89863420 None:intergenic
TCCTAATAGAGGTACCTGGA+TGG 0.607966 4.3:+89861137 MS.gene34193:CDS
ACTCAGAGGTCAGCAAAACA+AGG 0.609849 4.3:-89863210 None:intergenic
ATTGTCAGAAATAAGGACAC+CGG 0.619613 4.3:-89862984 None:intergenic
TGACAACCCTTCAGAAGACA+CGG 0.630940 4.3:+89863027 MS.gene34193:CDS
TCAGTCAGAACCACCGGTGT+CGG 0.632605 4.3:+89864339 MS.gene34193:CDS
GGCATTGTTTCTGATCAACA+TGG 0.634211 4.3:+89860949 MS.gene34193:CDS
ATTGCAGACAGAGAAGTCCC+AGG 0.635734 4.3:+89863264 MS.gene34193:CDS
CCGGTGGTTCTGACTGATGT+GGG 0.637225 4.3:-89864333 None:intergenic
AAACACTGCCCATAATAGAA+GGG 0.640033 4.3:-89863161 None:intergenic
GTAAAACCGTGTCTTCTGAA+GGG 0.641040 4.3:-89863033 None:intergenic
TCAGAAATAAGGACACCGGA+AGG 0.641575 4.3:-89862980 None:intergenic
TTGTGATGCCAAGACTGGGT+TGG 0.641893 4.3:+89862801 MS.gene34193:CDS
GTAGCAGTGGGTTTAGTACA+CGG 0.644415 4.3:+89864408 MS.gene34193:CDS
CCAGGTACCTCTATTAGGAG+CGG 0.650113 4.3:-89861133 None:intergenic
ATACATTATTATAGATGACA+GGG 0.653715 4.3:+89860674 None:intergenic
ATAAATATACACGATTGTGA+AGG 0.658702 4.3:-89863578 None:intergenic
ATACTCGTTCTCGTTTACGC+CGG 0.663285 4.3:+89860778 MS.gene34193:CDS
GCTTGCGACTCCGACACCGG+TGG 0.668961 4.3:-89864349 None:intergenic
CGTGTATATTTATGCCCCAG+AGG 0.676515 4.3:+89863588 MS.gene34193:CDS
TCATCATGTCTACACATCGT+CGG 0.680005 4.3:-89864559 None:intergenic
TCTGCCTGAAGACCTAACAA+CGG 0.688127 4.3:+89863519 MS.gene34193:CDS
AAGCAAGGAGACATAATTTG+GGG 0.695881 4.3:-89861037 None:intergenic
TACATTATTATAGATGACAG+GGG 0.700651 4.3:+89860675 None:intergenic
GCATAAAGACATTACCTCTG+GGG 0.717940 4.3:-89863602 None:intergenic
AACAAATTCAAGAAACCACG+AGG 0.737456 4.3:-89861109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATAATTGAAAAGA+TGG + chr4.3:89861298-89861317 MS.gene34193:intron 10.0%
!! AGAAAAAATAAAGCAAATTA+TGG + chr4.3:89864039-89864058 MS.gene34193:intron 15.0%
!! ATTAGAACTAAATTAAATCA+AGG - chr4.3:89862371-89862390 None:intergenic 15.0%
!! TATAAGAAAAGATAGAAATA+TGG + chr4.3:89861440-89861459 MS.gene34193:intron 15.0%
!! TCAATTTAAATAGTTGTAAA+CGG + chr4.3:89862458-89862477 MS.gene34193:intron 15.0%
!! TTTACAACTATTTAAATTGA+GGG - chr4.3:89862458-89862477 None:intergenic 15.0%
!!! AAGTTCAAAATTTGAAATAA+AGG - chr4.3:89862297-89862316 None:intergenic 15.0%
!!! TAATTTGCTTTATTTTTTCT+AGG - chr4.3:89864039-89864058 None:intergenic 15.0%
!!! TTAATTAATTTTGAATGATC+TGG + chr4.3:89863633-89863652 MS.gene34193:intron 15.0%
!! AAAGGAATGATTTCTAATTT+AGG + chr4.3:89863088-89863107 MS.gene34193:CDS 20.0%
!! AAATTAAATCAAGGAGATTT+GGG - chr4.3:89862362-89862381 None:intergenic 20.0%
!! AAATTAGAAATCATTCCTTT+AGG - chr4.3:89863088-89863107 None:intergenic 20.0%
!! AAGAATGTTATTATCTTAAG+GGG + chr4.3:89863819-89863838 MS.gene34193:intron 20.0%
!! AGAAGAATGTTATTATCTTA+AGG + chr4.3:89863817-89863836 MS.gene34193:intron 20.0%
!! ATATATAATTGAAAAGATGG+TGG + chr4.3:89861301-89861320 MS.gene34193:intron 20.0%
!! GAAGAATGTTATTATCTTAA+GGG + chr4.3:89863818-89863837 MS.gene34193:intron 20.0%
!! GTCTAATTCTTCTTTATAAA+TGG + chr4.3:89864267-89864286 MS.gene34193:intron 20.0%
!! GTTTACAACTATTTAAATTG+AGG - chr4.3:89862459-89862478 None:intergenic 20.0%
!! TAAATTAAATCAAGGAGATT+TGG - chr4.3:89862363-89862382 None:intergenic 20.0%
!! TAATTCTTCTTTATAAATGG+TGG + chr4.3:89864270-89864289 MS.gene34193:intron 20.0%
!!! AATGTGTTTTACTTAACAAA+GGG + chr4.3:89861822-89861841 MS.gene34193:intron 20.0%
!!! TATACATTACTTAAGTCTTT+TGG - chr4.3:89862545-89862564 None:intergenic 20.0%
!!! TCATATTTTAGTAGTCTTAT+TGG - chr4.3:89863781-89863800 None:intergenic 20.0%
!!! TCTTTTCTTATACTTTTTCT+TGG - chr4.3:89861432-89861451 None:intergenic 20.0%
!!! TTTCTTAACCAATTCTTTTA+CGG + chr4.3:89863947-89863966 MS.gene34193:intron 20.0%
! AAATAAAGGCTTAAGCAAAT+TGG - chr4.3:89862283-89862302 None:intergenic 25.0%
! AACAAATTCCGTAAAAGAAT+TGG - chr4.3:89863958-89863977 None:intergenic 25.0%
! AAGTACTATTGTATAGCAAT+TGG + chr4.3:89863743-89863762 MS.gene34193:intron 25.0%
! AAGTATGTAAGGAAAGAATA+CGG + chr4.3:89861776-89861795 MS.gene34193:intron 25.0%
! AATAGTTCCTATCTAATAAC+TGG - chr4.3:89864194-89864213 None:intergenic 25.0%
! AATTCAAAAACAATGAGGTA+GGG - chr4.3:89864128-89864147 None:intergenic 25.0%
! ACAGCATTATTAACTTCAAA+TGG + chr4.3:89863893-89863912 MS.gene34193:intron 25.0%
! ATAAATATACACGATTGTGA+AGG - chr4.3:89863581-89863600 None:intergenic 25.0%
! ATTCAACAACAGTATAGAAT+AGG - chr4.3:89863715-89863734 None:intergenic 25.0%
! CAATTTGATTGTCAGAAATA+AGG - chr4.3:89862994-89863013 None:intergenic 25.0%
! CAGTTAATTCAAAAACAATG+AGG - chr4.3:89864133-89864152 None:intergenic 25.0%
! TAAAATTCTTTCTTGCATGA+AGG - chr4.3:89862428-89862447 None:intergenic 25.0%
! TAAGTTACCACAAAGAAAAA+AGG + chr4.3:89864163-89864182 MS.gene34193:intron 25.0%
! TAATTCAAAAACAATGAGGT+AGG - chr4.3:89864129-89864148 None:intergenic 25.0%
!! AGAAACAGAAAAAGTATGTA+AGG + chr4.3:89861765-89861784 MS.gene34193:intron 25.0%
!! ATGTGTTTTACTTAACAAAG+GGG + chr4.3:89861823-89861842 MS.gene34193:intron 25.0%
!! CAATGTGTTTTACTTAACAA+AGG + chr4.3:89861821-89861840 MS.gene34193:intron 25.0%
!! TCATTTTGTAAAACAGAAGA+AGG - chr4.3:89862865-89862884 None:intergenic 25.0%
!! TTCAAATTTTGAACTTACCT+AGG + chr4.3:89862301-89862320 MS.gene34193:intron 25.0%
!!! ATTCAACTTCACTTTTTCTT+GGG - chr4.3:89863063-89863082 None:intergenic 25.0%
!!! GGTAATGCTTTTTCATATTA+TGG + chr4.3:89863187-89863206 MS.gene34193:CDS 25.0%
!!! TGTTTTGACAATTCTTAAAG+AGG - chr4.3:89864075-89864094 None:intergenic 25.0%
!!! TTTTAGTAGTCTTATTGGAT+TGG - chr4.3:89863776-89863795 None:intergenic 25.0%
AAACAAATGCAAACTATACC+TGG + chr4.3:89864090-89864109 MS.gene34193:intron 30.0%
AAATTAGGGTTAAGTGGTTT+GGG + chr4.3:89861324-89861343 MS.gene34193:intron 30.0%
AATATAGTGAGTAGTGAGAT+AGG + chr4.3:89861741-89861760 MS.gene34193:intron 30.0%
AGTCAAATCACTATTTACAG+AGG + chr4.3:89861402-89861421 MS.gene34193:intron 30.0%
AGTTGGTTAGTATTTAGATG+AGG + chr4.3:89861716-89861735 MS.gene34193:intron 30.0%
ATGATGTTACTCTCATTTGT+AGG + chr4.3:89860829-89860848 MS.gene34193:CDS 30.0%
GATGAAGCTCTTATAACATT+AGG + chr4.3:89860739-89860758 MS.gene34193:CDS 30.0%
GGAATGATTTCTAATTTAGG+TGG + chr4.3:89863091-89863110 MS.gene34193:CDS 30.0%
GGCTAAATGATGAAAGTAAA+TGG - chr4.3:89862623-89862642 None:intergenic 30.0%
GTAACAAAATGAGACATAAG+AGG + chr4.3:89861693-89861712 MS.gene34193:intron 30.0%
TATGAAACTTTCTTGATGAG+AGG - chr4.3:89860884-89860903 None:intergenic 30.0%
TGACAAATCATAGAGATGAT+GGG + chr4.3:89862751-89862770 MS.gene34193:intron 30.0%
TTACTTTCATCATTTAGCCT+AGG + chr4.3:89862624-89862643 MS.gene34193:intron 30.0%
! GCTCTTATAACATTAGGTTT+TGG + chr4.3:89860745-89860764 MS.gene34193:CDS 30.0%
! GTCTCATTTTGTTACATTTG+CGG - chr4.3:89861688-89861707 None:intergenic 30.0%
! TTATGGCTTTACTTGTCTTA+AGG + chr4.3:89862653-89862672 MS.gene34193:intron 30.0%
! TTGATATTAAGGCTTTGTCT+GGG + chr4.3:89861894-89861913 MS.gene34193:intron 30.0%
!! ACTATTTCTTTTCAACTCAG+AGG - chr4.3:89863227-89863246 None:intergenic 30.0%
!! CAAAAGTACTCTTCAAAGTA+AGG + chr4.3:89862124-89862143 MS.gene34193:intron 30.0%
!! GGAGGTTTTTCTTTTTTCAT+TGG + chr4.3:89861962-89861981 MS.gene34193:intron 30.0%
!! TGAAAAGATGGTGGAAATTA+GGG + chr4.3:89861310-89861329 MS.gene34193:intron 30.0%
!! TTGAAAAGATGGTGGAAATT+AGG + chr4.3:89861309-89861328 MS.gene34193:intron 30.0%
!! TTGTTTTACTATACCATTCC+CGG + chr4.3:89863350-89863369 MS.gene34193:intron 30.0%
!!! ATAACAAGTGTTGTTTTTGC+CGG + chr4.3:89860901-89860920 MS.gene34193:CDS 30.0%
!!! CTTACTTTGAAGAGTACTTT+TGG - chr4.3:89862126-89862145 None:intergenic 30.0%
!!! GATTCAACTTCACTTTTTCT+TGG - chr4.3:89863064-89863083 None:intergenic 30.0%
!!! GTTTTTATTGCTAGTTTTGC+AGG + chr4.3:89863304-89863323 MS.gene34193:CDS 30.0%
!!! TTCAACTTCACTTTTTCTTG+GGG - chr4.3:89863062-89863081 None:intergenic 30.0%
AAAACACTGCCCATAATAGA+AGG - chr4.3:89863165-89863184 None:intergenic 35.0%
AAACACTGCCCATAATAGAA+GGG - chr4.3:89863164-89863183 None:intergenic 35.0%
AAACAGAAGAAGGAAAGATG+TGG - chr4.3:89862855-89862874 None:intergenic 35.0%
AAATGAGACATAAGAGGAGT+TGG + chr4.3:89861699-89861718 MS.gene34193:intron 35.0%
AACAAATTCAAGAAACCACG+AGG - chr4.3:89861112-89861131 None:intergenic 35.0%
AACAGAAGAAGGAAAGATGT+GGG - chr4.3:89862854-89862873 None:intergenic 35.0%
AACTTTCTTGATGAGAGGAA+AGG - chr4.3:89860879-89860898 None:intergenic 35.0%
AAGCAAGGAGACATAATTTG+GGG - chr4.3:89861040-89861059 None:intergenic 35.0%
AAGGTCAACCCTTCTATTAT+GGG + chr4.3:89863153-89863172 MS.gene34193:CDS 35.0%
AATACGGATCTCTTGAATCA+AGG + chr4.3:89861792-89861811 MS.gene34193:intron 35.0%
AATGGCAAAAAACTTCCTTC+CGG + chr4.3:89862965-89862984 MS.gene34193:CDS 35.0%
ACAAGCAAGGAGACATAATT+TGG - chr4.3:89861042-89861061 None:intergenic 35.0%
ACACGTTTCCTACATATTGA+AGG - chr4.3:89861996-89862015 None:intergenic 35.0%
ACCAAAACCCTTCAATATGT+AGG + chr4.3:89861985-89862004 MS.gene34193:intron 35.0%
ACCTTTGTAACTTACATCCT+GGG - chr4.3:89863284-89863303 None:intergenic 35.0%
AGTGAAGTTGAATCTCCTAA+AGG + chr4.3:89863070-89863089 MS.gene34193:CDS 35.0%
ATATGCGAGCTCCAAATAAA+AGG - chr4.3:89863546-89863565 None:intergenic 35.0%
ATATGTAGGAAACGTGTTGA+AGG + chr4.3:89861999-89862018 MS.gene34193:intron 35.0%
ATCGTGTATCATTGTAACAG+AGG - chr4.3:89861591-89861610 None:intergenic 35.0%
ATTGTCAGAAATAAGGACAC+CGG - chr4.3:89862987-89863006 None:intergenic 35.0%
CAAGCAAGGAGACATAATTT+GGG - chr4.3:89861041-89861060 None:intergenic 35.0%
CACAGAGAACTAACTTTGTA+AGG - chr4.3:89863997-89864016 None:intergenic 35.0%
CACGTTTCCTACATATTGAA+GGG - chr4.3:89861995-89862014 None:intergenic 35.0%
CAGACAAAGCCTTAATATCA+AGG - chr4.3:89861895-89861914 None:intergenic 35.0%
CAGGCAGATAGAATGTTAAT+GGG - chr4.3:89863507-89863526 None:intergenic 35.0%
CTGACAAATCATAGAGATGA+TGG + chr4.3:89862750-89862769 MS.gene34193:intron 35.0%
CTTTCGTCATGTATAAGACA+TGG + chr4.3:89864224-89864243 MS.gene34193:intron 35.0%
GAAATTAGGGTTAAGTGGTT+TGG + chr4.3:89861323-89861342 MS.gene34193:intron 35.0%
GAGAAATCTTGTGCATTCTT+CGG + chr4.3:89863674-89863693 MS.gene34193:intron 35.0%
GAGACAATAGCAAGACTAAA+TGG + chr4.3:89862947-89862966 MS.gene34193:CDS 35.0%
GAGCTACAATTACAAACAGA+AGG - chr4.3:89864455-89864474 None:intergenic 35.0%
GATAGAATGTTAATGGGAGA+AGG - chr4.3:89863501-89863520 None:intergenic 35.0%
GCAATATCGCCTTGATATTA+AGG + chr4.3:89861883-89861902 MS.gene34193:intron 35.0%
GGACAGAGAACTAAAAAAAC+CGG - chr4.3:89861019-89861038 None:intergenic 35.0%
GTAAGCACCAATTAACATTC+CGG - chr4.3:89860923-89860942 None:intergenic 35.0%
TAAAGCCATAACAGTTTCCT+AGG - chr4.3:89862644-89862663 None:intergenic 35.0%
TCAGGCAGATAGAATGTTAA+TGG - chr4.3:89863508-89863527 None:intergenic 35.0%
TCCTTTCACCCAAATTATCA+AGG + chr4.3:89863134-89863153 MS.gene34193:CDS 35.0%
TCTCTGTCTGCAATTTATCT+GGG - chr4.3:89863258-89863277 None:intergenic 35.0%
TGCATAAAGACATTACCTCT+GGG - chr4.3:89863606-89863625 None:intergenic 35.0%
TTCTCTGTCTGCAATTTATC+TGG - chr4.3:89863259-89863278 None:intergenic 35.0%
TTCTTGCATGAAGGAATGAT+AGG - chr4.3:89862419-89862438 None:intergenic 35.0%
TTGAACTTACCTAGGATTCA+AGG + chr4.3:89862309-89862328 MS.gene34193:intron 35.0%
TTGCATAAAGACATTACCTC+TGG - chr4.3:89863607-89863626 None:intergenic 35.0%
TTGTTCTACCTTTCAAGCAT+AGG - chr4.3:89862907-89862926 None:intergenic 35.0%
TTTAGCCTAGGAAACTGTTA+TGG + chr4.3:89862636-89862655 MS.gene34193:intron 35.0%
! AACTGAAGCAACTAACGTTT+TGG + chr4.3:89862925-89862944 MS.gene34193:CDS 35.0%
! AAGGGTTGACCTTGATAATT+TGG - chr4.3:89863146-89863165 None:intergenic 35.0%
! ACCTTGATAATTTGGGTGAA+AGG - chr4.3:89863138-89863157 None:intergenic 35.0%
! AGGGTTGACCTTGATAATTT+GGG - chr4.3:89863145-89863164 None:intergenic 35.0%
! CATCATCTCTATGATTTGTC+AGG - chr4.3:89862752-89862771 None:intergenic 35.0%
! CTACTAGTTTAACTGCAAAC+TGG - chr4.3:89862214-89862233 None:intergenic 35.0%
! CTATTATGGGCAGTGTTTTT+CGG + chr4.3:89863166-89863185 MS.gene34193:CDS 35.0%
! CTTGATATTAAGGCTTTGTC+TGG + chr4.3:89861893-89861912 MS.gene34193:intron 35.0%
! GGTTTCACAGCAATGTTTTT+CGG + chr4.3:89864245-89864264 MS.gene34193:intron 35.0%
! GTAATTGTAGCTCTTGTTTC+AGG + chr4.3:89864462-89864481 MS.gene34193:CDS 35.0%
! GTCTTTTGGCAGTTAATTGT+TGG - chr4.3:89862531-89862550 None:intergenic 35.0%
! GTTAATTGGTGCTTACTCAT+GGG + chr4.3:89860927-89860946 MS.gene34193:CDS 35.0%
! GTTAATTGTTGGCTACACAT+AGG - chr4.3:89862520-89862539 None:intergenic 35.0%
! GTTTTTGCCGGAATGTTAAT+TGG + chr4.3:89860913-89860932 MS.gene34193:CDS 35.0%
! TCATTTTGTTACATTTGCGG+AGG - chr4.3:89861685-89861704 None:intergenic 35.0%
! TCCTACATATTGAAGGGTTT+TGG - chr4.3:89861989-89862008 None:intergenic 35.0%
! TGTTAATTGGTGCTTACTCA+TGG + chr4.3:89860926-89860945 MS.gene34193:CDS 35.0%
! TGTTTTACTATACCATTCCC+GGG + chr4.3:89863351-89863370 MS.gene34193:intron 35.0%
! TTAATTGGTGCTTACTCATG+GGG + chr4.3:89860928-89860947 MS.gene34193:CDS 35.0%
!! CTTCCTTTGGTGTTCTAAAA+TGG - chr4.3:89861857-89861876 None:intergenic 35.0%
!! TACTTAAGAGTGTCTACACT+AGG + chr4.3:89861637-89861656 MS.gene34193:intron 35.0%
!! TTGTTTCTGATCAACATGGA+AGG + chr4.3:89860953-89860972 MS.gene34193:CDS 35.0%
!!! CATTTTAGAACACCAAAGGA+AGG + chr4.3:89861855-89861874 MS.gene34193:intron 35.0%
!!! TTTGAAGAGTACTTTTGGAG+AGG - chr4.3:89862121-89862140 None:intergenic 35.0%
!!! TTTTGAAGCATCACTTGCTT+GGG + chr4.3:89861194-89861213 MS.gene34193:CDS 35.0%
!!! TTTTTGAAGCATCACTTGCT+TGG + chr4.3:89861193-89861212 MS.gene34193:CDS 35.0%
AAAAACCTCCACACAAGATG+GGG - chr4.3:89861952-89861971 None:intergenic 40.0%
AAGAAGGAAAGATGTGGGAA+GGG - chr4.3:89862849-89862868 None:intergenic 40.0%
AAGGGAACGAAAAACAAGCA+AGG - chr4.3:89861055-89861074 None:intergenic 40.0%
AATCATACATTTCCCGGGAA+TGG - chr4.3:89863366-89863385 None:intergenic 40.0%
ACACAGTATCTTGCAGTTCT+TGG - chr4.3:89864524-89864543 None:intergenic 40.0%
ACACTTAGACCTTGAATCCT+AGG - chr4.3:89862321-89862340 None:intergenic 40.0%
ACCAAGTTTATCCACTGCTA+CGG - chr4.3:89863434-89863453 None:intergenic 40.0%
AGAAAAACCTCCACACAAGA+TGG - chr4.3:89861954-89861973 None:intergenic 40.0%
AGGATTCAAGGTCTAAGTGT+AGG + chr4.3:89862321-89862340 MS.gene34193:intron 40.0%
AGTAAAACCGTGTCTTCTGA+AGG - chr4.3:89863037-89863056 None:intergenic 40.0%
ATATTGCACTCACCTTCCTT+TGG - chr4.3:89861870-89861889 None:intergenic 40.0%
ATCTGCAAGGAACATTGCAT+TGG - chr4.3:89862782-89862801 None:intergenic 40.0%
CAAATAAAAGGCCCGTTGTT+AGG - chr4.3:89863534-89863553 None:intergenic 40.0%
CAAGGTCAACCCTTCTATTA+TGG + chr4.3:89863152-89863171 MS.gene34193:CDS 40.0%
CACCTTTGTAACTTACATCC+TGG - chr4.3:89863285-89863304 None:intergenic 40.0%
CATTGTAACAGAGGAAAGCT+AGG - chr4.3:89861582-89861601 None:intergenic 40.0%
CCAAGATACCTATGCTTGAA+AGG + chr4.3:89862896-89862915 MS.gene34193:CDS 40.0%
CCTTTCAAGCATAGGTATCT+TGG - chr4.3:89862899-89862918 None:intergenic 40.0%
GAAAAACCTCCACACAAGAT+GGG - chr4.3:89861953-89861972 None:intergenic 40.0%
GATCAACATGGAAGGAGAAA+AGG + chr4.3:89860961-89860980 MS.gene34193:CDS 40.0%
GCATAAAGACATTACCTCTG+GGG - chr4.3:89863605-89863624 None:intergenic 40.0%
GCATCAATCATACATTTCCC+GGG - chr4.3:89863371-89863390 None:intergenic 40.0%
GGATCTCTTGAATCAAGGAA+AGG + chr4.3:89861797-89861816 MS.gene34193:intron 40.0%
GGCATCAATCATACATTTCC+CGG - chr4.3:89863372-89863391 None:intergenic 40.0%
GGCTGAGATTTGAATCATCT+AGG - chr4.3:89862193-89862212 None:intergenic 40.0%
GGTCTCACCAGTTATTAGAT+AGG + chr4.3:89864184-89864203 MS.gene34193:intron 40.0%
GTAAAACCGTGTCTTCTGAA+GGG - chr4.3:89863036-89863055 None:intergenic 40.0%
GTGTAGACACTCTTAAGTAC+TGG - chr4.3:89861636-89861655 None:intergenic 40.0%
TCCCAGGATGTAAGTTACAA+AGG + chr4.3:89863280-89863299 MS.gene34193:CDS 40.0%
TCTACACTAGGAGAGAAAAG+AGG + chr4.3:89861649-89861668 MS.gene34193:intron 40.0%
TCTGCAAGGAACATTGCATT+GGG - chr4.3:89862781-89862800 None:intergenic 40.0%
TGCATGAAGGAATGATAGGA+AGG - chr4.3:89862415-89862434 None:intergenic 40.0%
TGGTGGAAATTAGGGTTAAG+TGG + chr4.3:89861318-89861337 MS.gene34193:intron 40.0%
TGGTGGAATGTTATGTCCAT+TGG + chr4.3:89864386-89864405 MS.gene34193:CDS 40.0%
TGGTTGGATTTCAGAAGCAA+TGG + chr4.3:89860804-89860823 MS.gene34193:CDS 40.0%
TGTACCAACAGTCCAAAAAC+CGG - chr4.3:89861172-89861191 None:intergenic 40.0%
! ATTGTTGGCTACACATAGGA+AGG - chr4.3:89862516-89862535 None:intergenic 40.0%
! CTAACAACGGGCCTTTTATT+TGG + chr4.3:89863532-89863551 MS.gene34193:CDS 40.0%
! GTAGCTCTGTGCACAAAATT+TGG - chr4.3:89863393-89863412 None:intergenic 40.0%
! GTAGGGAGTAATTTAAAGCC+AGG - chr4.3:89864111-89864130 None:intergenic 40.0%
! GTGTTGAAGGAGGATTTTGA+GGG + chr4.3:89862012-89862031 MS.gene34193:intron 40.0%
! TGGTTGTGTTTTCCGGTTTT+TGG + chr4.3:89861157-89861176 MS.gene34193:CDS 40.0%
! TTATGTCCATTGGTAGCAGT+GGG + chr4.3:89864396-89864415 MS.gene34193:CDS 40.0%
! TTCTTTCCGTTTGAGACCAT+GGG + chr4.3:89864498-89864517 MS.gene34193:CDS 40.0%
!! CTAGGCTTTGTTTGAGTGTT+AGG - chr4.3:89862175-89862194 None:intergenic 40.0%
!! CTTGTTTTTCGTTCCCTTGT+TGG + chr4.3:89861057-89861076 MS.gene34193:CDS 40.0%
!! GCTTTGTTTGAGTGTTAGGA+GGG - chr4.3:89862171-89862190 None:intergenic 40.0%
!! GGCATTGTTTCTGATCAACA+TGG + chr4.3:89860949-89860968 MS.gene34193:CDS 40.0%
!! TCAAGTTTTATCGCACCAAG+TGG - chr4.3:89861511-89861530 None:intergenic 40.0%
!! TTCTGAAATCCAACCAATGC+CGG - chr4.3:89860800-89860819 None:intergenic 40.0%
!! TTTTCCGGTTTTTGGACTGT+TGG + chr4.3:89861165-89861184 MS.gene34193:CDS 40.0%
!!! GGTGAGACCTTTTTTCTTTG+TGG - chr4.3:89864173-89864192 None:intergenic 40.0%
!!! GTGCCATTTTAGAACACCAA+AGG + chr4.3:89861851-89861870 MS.gene34193:intron 40.0%
ACCATCCAGGTACCTCTATT+AGG - chr4.3:89861141-89861160 None:intergenic 45.0%
ACTAAACCCACTGCTACCAA+TGG - chr4.3:89864405-89864424 None:intergenic 45.0%
ACTCAGAGGTCAGCAAAACA+AGG - chr4.3:89863213-89863232 None:intergenic 45.0%
ATACTCGTTCTCGTTTACGC+CGG + chr4.3:89860778-89860797 MS.gene34193:CDS 45.0%
ATGACAGGGGAAGAAGTTGA+AGG + chr4.3:89860688-89860707 MS.gene34193:CDS 45.0%
CAGATTGTGATGCCAAGACT+GGG + chr4.3:89862797-89862816 MS.gene34193:intron 45.0%
CGTGTATATTTATGCCCCAG+AGG + chr4.3:89863588-89863607 MS.gene34193:CDS 45.0%
CTTTGTCTGGGTGTTTGGAA+AGG + chr4.3:89861906-89861925 MS.gene34193:intron 45.0%
GAAGAAGGAAAGATGTGGGA+AGG - chr4.3:89862850-89862869 None:intergenic 45.0%
GGTCTAAGTGTAGGAGAATC+AGG + chr4.3:89862330-89862349 MS.gene34193:intron 45.0%
GTTTGAGTGTTAGGAGGGAA+AGG - chr4.3:89862166-89862185 None:intergenic 45.0%
GTTTGGAAAGGAAGGGGAAA+GGG + chr4.3:89861918-89861937 MS.gene34193:intron 45.0%
TCAGAAATAAGGACACCGGA+AGG - chr4.3:89862983-89863002 None:intergenic 45.0%
TCCCAAACCAAGACCAACAA+GGG - chr4.3:89861073-89861092 None:intergenic 45.0%
TCTGCCTGAAGACCTAACAA+CGG + chr4.3:89863519-89863538 MS.gene34193:CDS 45.0%
TCTGGGTGTTTGGAAAGGAA+GGG + chr4.3:89861911-89861930 MS.gene34193:intron 45.0%
TCTTGGCATCACAATCTGCA+AGG - chr4.3:89862795-89862814 None:intergenic 45.0%
TGACAACCCTTCAGAAGACA+CGG + chr4.3:89863027-89863046 MS.gene34193:CDS 45.0%
TGTAGGAAACGTGTTGAAGG+AGG + chr4.3:89862002-89862021 MS.gene34193:intron 45.0%
TGTTTGGAAAGGAAGGGGAA+AGG + chr4.3:89861917-89861936 MS.gene34193:intron 45.0%
TTCCATGCAGATTGAACTGC+AGG - chr4.3:89860856-89860875 None:intergenic 45.0%
TTTATCGCACCAAGTGGAGT+CGG - chr4.3:89861505-89861524 None:intergenic 45.0%
TTTGGAAAGGAAGGGGAAAG+GGG + chr4.3:89861919-89861938 MS.gene34193:intron 45.0%
TTTGTTCCCGCTCCTAATAG+AGG + chr4.3:89861126-89861145 MS.gene34193:CDS 45.0%
! ACCTGGATGGTTGTGTTTTC+CGG + chr4.3:89861150-89861169 MS.gene34193:CDS 45.0%
! AGCAAAGAGAGCAGTTCTGA+TGG + chr4.3:89861374-89861393 MS.gene34193:intron 45.0%
! ATTTTGTGCACAGAGCTACC+TGG + chr4.3:89863394-89863413 MS.gene34193:intron 45.0%
! CATAGGTATCTTGGTGACTC+TGG - chr4.3:89862890-89862909 None:intergenic 45.0%
! CGTGTTGAAGGAGGATTTTG+AGG + chr4.3:89862011-89862030 MS.gene34193:intron 45.0%
! GTAGCAGTGGGTTTAGTACA+CGG + chr4.3:89864408-89864427 MS.gene34193:CDS 45.0%
! GTTATGTCCATTGGTAGCAG+TGG + chr4.3:89864395-89864414 MS.gene34193:CDS 45.0%
! GTTCTTTCCGTTTGAGACCA+TGG + chr4.3:89864497-89864516 MS.gene34193:CDS 45.0%
! TAAGGCTTTGTCTGGGTGTT+TGG + chr4.3:89861901-89861920 MS.gene34193:intron 45.0%
! TTTCGTTCCCTTGTTGGTCT+TGG + chr4.3:89861063-89861082 MS.gene34193:CDS 45.0%
! TTTTGTGCACAGAGCTACCT+GGG + chr4.3:89863395-89863414 MS.gene34193:intron 45.0%
!! GGCTTTGTTTGAGTGTTAGG+AGG - chr4.3:89862172-89862191 None:intergenic 45.0%
!! TCCCTTGTTGGTCTTGGTTT+GGG + chr4.3:89861069-89861088 MS.gene34193:CDS 45.0%
!! TCCTAATAGAGGTACCTGGA+TGG + chr4.3:89861137-89861156 MS.gene34193:CDS 45.0%
!! TTCCCTTGTTGGTCTTGGTT+TGG + chr4.3:89861068-89861087 MS.gene34193:CDS 45.0%
ACCGGAAAACACAACCATCC+AGG - chr4.3:89861154-89861173 None:intergenic 50.0%
AGAAACCACGAGGACAAGAC+AGG - chr4.3:89861102-89861121 None:intergenic 50.0%
AGCTCAGTGGGTAGAATTGG+TGG + chr4.3:89864369-89864388 MS.gene34193:CDS 50.0%
AGTGTTAGGAGGGAAAGGAG+GGG - chr4.3:89862161-89862180 None:intergenic 50.0%
ATCTTGCAGTTCTTGGCCCA+TGG - chr4.3:89864517-89864536 None:intergenic 50.0%
ATTGCAGACAGAGAAGTCCC+AGG + chr4.3:89863264-89863283 MS.gene34193:CDS 50.0%
CAGGTACCTCTATTAGGAGC+GGG - chr4.3:89861135-89861154 None:intergenic 50.0%
CATGAACTGCGTGCAAAGCT+AGG - chr4.3:89861550-89861569 None:intergenic 50.0%
CCAGGTACCTCTATTAGGAG+CGG - chr4.3:89861136-89861155 None:intergenic 50.0%
CTCCCAAACCAAGACCAACA+AGG - chr4.3:89861074-89861093 None:intergenic 50.0%
CTGCCTGAAGACCTAACAAC+GGG + chr4.3:89863520-89863539 MS.gene34193:CDS 50.0%
CTGGGTGTTTGGAAAGGAAG+GGG + chr4.3:89861912-89861931 MS.gene34193:intron 50.0%
GAGTAGATCCCCATCTTGTG+TGG + chr4.3:89861941-89861960 MS.gene34193:intron 50.0%
GAGTGTTAGGAGGGAAAGGA+GGG - chr4.3:89862162-89862181 None:intergenic 50.0%
GCAAGCTCAGTGGGTAGAAT+TGG + chr4.3:89864366-89864385 MS.gene34193:CDS 50.0%
GCAGATTGTGATGCCAAGAC+TGG + chr4.3:89862796-89862815 MS.gene34193:intron 50.0%
GCCGTAGCAGTGGATAAACT+TGG + chr4.3:89863430-89863449 MS.gene34193:CDS 50.0%
GCTACTGTTACTGCTACTGC+CGG + chr4.3:89860997-89861016 MS.gene34193:CDS 50.0%
GGCTACACATAGGAAGGAAG+TGG - chr4.3:89862510-89862529 None:intergenic 50.0%
GTCCTGCAGTTCAATCTGCA+TGG + chr4.3:89860851-89860870 MS.gene34193:CDS 50.0%
GTCTGGGTGTTTGGAAAGGA+AGG + chr4.3:89861910-89861929 MS.gene34193:intron 50.0%
TAGATCCCCATCTTGTGTGG+AGG + chr4.3:89861944-89861963 MS.gene34193:intron 50.0%
TCTTGGCCCATGGTCTCAAA+CGG - chr4.3:89864507-89864526 None:intergenic 50.0%
TGAGTGTTAGGAGGGAAAGG+AGG - chr4.3:89862163-89862182 None:intergenic 50.0%
TTGTGATGCCAAGACTGGGT+TGG + chr4.3:89862801-89862820 MS.gene34193:CDS 50.0%
!! CTTGTTGGTCTTGGTTTGGG+AGG + chr4.3:89861072-89861091 MS.gene34193:CDS 50.0%
ACCAAGTGGAGTCGGCTACA+TGG - chr4.3:89861497-89861516 None:intergenic 55.0%
AGCCATCTCCAACCCAGTCT+TGG - chr4.3:89862812-89862831 None:intergenic 55.0%
AGGCCCGTTGTTAGGTCTTC+AGG - chr4.3:89863526-89863545 None:intergenic 55.0%
CCCACATCAGTCAGAACCAC+CGG + chr4.3:89864333-89864352 MS.gene34193:CDS 55.0%
GTTCTCGTTTACGCCGGCAT+TGG + chr4.3:89860784-89860803 MS.gene34193:CDS 55.0%
TCAGTCAGAACCACCGGTGT+CGG + chr4.3:89864339-89864358 MS.gene34193:CDS 55.0%
! TCCATGTAGCCGACTCCACT+TGG + chr4.3:89861493-89861512 MS.gene34193:intron 55.0%
! TGCCAAGACTGGGTTGGAGA+TGG + chr4.3:89862807-89862826 MS.gene34193:CDS 55.0%
!! ACCGGTGGTTCTGACTGATG+TGG - chr4.3:89864337-89864356 None:intergenic 55.0%
!! CCGCTCCTAATAGAGGTACC+TGG + chr4.3:89861133-89861152 MS.gene34193:CDS 55.0%
!! CCGGTGGTTCTGACTGATGT+GGG - chr4.3:89864336-89864355 None:intergenic 55.0%
!! GTTGGTCTTGGTTTGGGAGG+CGG + chr4.3:89861075-89861094 MS.gene34193:CDS 55.0%
!! TCGTTTACGCCGGCATTGGT+TGG + chr4.3:89860788-89860807 MS.gene34193:CDS 55.0%
CCACTGCTACGGCTGACAAG+AGG - chr4.3:89863423-89863442 None:intergenic 60.0%
CCTCTTGTCAGCCGTAGCAG+TGG + chr4.3:89863420-89863439 MS.gene34193:CDS 60.0%
GTCGGAGTCGCAAGCTCAGT+GGG + chr4.3:89864357-89864376 MS.gene34193:CDS 60.0%
TGAGCTTGCGACTCCGACAC+CGG - chr4.3:89864355-89864374 None:intergenic 60.0%
TGTCGGAGTCGCAAGCTCAG+TGG + chr4.3:89864356-89864375 MS.gene34193:CDS 60.0%
ACGGCTGACAAGAGGAGCCC+AGG - chr4.3:89863415-89863434 None:intergenic 65.0%
GCGGTCCTGTCTTGTCCTCG+TGG + chr4.3:89861094-89861113 MS.gene34193:CDS 65.0%
GCTTGCGACTCCGACACCGG+TGG - chr4.3:89864352-89864371 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 89860688 89864572 89860688 ID=MS.gene34193
chr4.3 mRNA 89860688 89864572 89860688 ID=MS.gene34193.t1;Parent=MS.gene34193
chr4.3 exon 89860688 89861215 89860688 ID=MS.gene34193.t1.exon1;Parent=MS.gene34193.t1
chr4.3 CDS 89860688 89861215 89860688 ID=cds.MS.gene34193.t1;Parent=MS.gene34193.t1
chr4.3 exon 89862800 89863325 89862800 ID=MS.gene34193.t1.exon2;Parent=MS.gene34193.t1
chr4.3 CDS 89862800 89863325 89862800 ID=cds.MS.gene34193.t1;Parent=MS.gene34193.t1
chr4.3 exon 89863407 89863609 89863407 ID=MS.gene34193.t1.exon3;Parent=MS.gene34193.t1
chr4.3 CDS 89863407 89863609 89863407 ID=cds.MS.gene34193.t1;Parent=MS.gene34193.t1
chr4.3 exon 89864327 89864572 89864327 ID=MS.gene34193.t1.exon4;Parent=MS.gene34193.t1
chr4.3 CDS 89864327 89864572 89864327 ID=cds.MS.gene34193.t1;Parent=MS.gene34193.t1
Gene Sequence

>MS.gene34193

ATGACAGGGGAAGAAGTTGAAGGCTCAAGCAGTAGCAGCAGCTATACAGTAGATGAAGCTCTTATAACATTAGGTTTTGGAAATTTTCAAATACTCGTTCTCGTTTACGCCGGCATTGGTTGGATTTCAGAAGCAATGGAAATGATGTTACTCTCATTTGTAGGTCCTGCAGTTCAATCTGCATGGAACCTTTCCTCTCATCAAGAAAGTTTCATAACAAGTGTTGTTTTTGCCGGAATGTTAATTGGTGCTTACTCATGGGGCATTGTTTCTGATCAACATGGAAGGAGAAAAGGATTTCTTATTACTGCTACTGTTACTGCTACTGCCGGTTTTTTTAGTTCTCTGTCCCCAAATTATGTCTCCTTGCTTGTTTTTCGTTCCCTTGTTGGTCTTGGTTTGGGAGGCGGTCCTGTCTTGTCCTCGTGGTTTCTTGAATTTGTTCCCGCTCCTAATAGAGGTACCTGGATGGTTGTGTTTTCCGGTTTTTGGACTGTTGGTACAATTTTTGAAGCATCACTTGCTTGGGTAAATTCATTATCTTTGTCTGTTTCTTCATTCATTGCATTCAAAGATTAAAATCTATGTTAATGTTTTTTTTTTTTTTTTTTATATATATAATTGAAAAGATGGTGGAAATTAGGGTTAAGTGGTTTGGGCATGTAGAAAAGAATTATAGATTCTGTAGCAAAGAGAGCAGTTCTGATGGAGAATAGTCAAATCACTATTTACAGAGGAAGACCAAGAAAAAGTATAAGAAAAGATAGAAATATGGTTTATGATAGAACATTATAGCATAACTTGATCCATGTAGCCGACTCCACTTGGTGCGATAAAACTTGATTGTTCTTCTTTCTTTCCTAGCTTTGCACGCAGTTCATGATCTGTTTTCCTAGCTTTCCTCTGTTACAATGATACACGATAGACATACATATTGATTGTAAACCAGTACTTAAGAGTGTCTACACTAGGAGAGAAAAGAGGATAACTGACACCTCCGCAAATGTAACAAAATGAGACATAAGAGGAGTTGGTTAGTATTTAGATGAGGTTAATATAGTGAGTAGTGAGATAGGTAGAAACAGAAAAAGTATGTAAGGAAAGAATACGGATCTCTTGAATCAAGGAAAGGTCAATGTGTTTTACTTAACAAAGGGGTGTATGTGCCATTTTAGAACACCAAAGGAAGGTGAGTGCAATATCGCCTTGATATTAAGGCTTTGTCTGGGTGTTTGGAAAGGAAGGGGAAAGGGGAGTAGATCCCCATCTTGTGTGGAGGTTTTTCTTTTTTCATTGGACCAAAACCCTTCAATATGTAGGAAACGTGTTGAAGGAGGATTTTGAGGGTTTTGAATAAATCTATAAATCATTTTCATCTCTTTATAATACTCTCAAATCAAAGAAAATATTAGCAATATGCATGCTCTCATCCTCTCCAAAAGTACTCTTCAAAGTAAGGTGAAAGATGCTCCCCTCCTTTCCCTCCTAACACTCAAACAAAGCCTAGATGATTCAAATCTCAGCCAGTTTGCAGTTAAACTAGTAGTTATAATGTTAACTCTATTTGTTTGTTGCGAGAGCTATGTATATTTCCAATTTGCTTAAGCCTTTATTTCAAATTTTGAACTTACCTAGGATTCAAGGTCTAAGTGTAGGAGAATCAGGAGATATCCCAAATCTCCTTGATTTAATTTAGTTCTAATTTCAGATGTTATTTATTATTTCCTTCCTATCATTCCTTCATGCAAGAAAGAATTTTATTGTGATCCCTCAATTTAAATAGTTGTAAACGGCTAAATTAATTACAAAAAGCATTTTGCCACTTCCTTCCTATGTGTAGCCAACAATTAACTGCCAAAAGACTTAAGTAATGTATAACATGACAGAAATTGTAAATTTTCTTTTTATTACGAAAATACAATCGCTAAAGAACCATTTACTTTCATCATTTAGCCTAGGAAACTGTTATGGCTTTACTTGTCTTAAGGAATATATCTAAACTTTTACTAATCTTGCTAATGTTCTGTCAATGCAATGTAACGTTTCTATCTCTGTTGAATACCTGACAAATCATAGAGATGATGGGTTCACCCAATGCAATGTTCCTTGCAGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTTCTGTTTTACAAAATGACACCAGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGAAGCAACTAACGTTTTGGAGACAATAGCAAGACTAAATGGCAAAAAACTTCCTTCCGGTGTCCTTATTTCTGACAATCAAATTGAGCTACAAAAAATTGACAACCCTTCAGAAGACACGGTTTTACTCTCCCCAAGAAAAAGTGAAGTTGAATCTCCTAAAGGAATGATTTCTAATTTAGGTGGTATCTCATCACTTCGAGTGCTCCTTTCACCCAAATTATCAAGGTCAACCCTTCTATTATGGGCAGTGTTTTTCGGTAATGCTTTTTCATATTATGGCCTTGTTTTGCTGACCTCTGAGTTGAAAAGAAATAGTAAATGTATCCCAGATAAATTGCAGACAGAGAAGTCCCAGGATGTAAGTTACAAAGGTGTTTTTATTGCTAGTTTTGCAGGTATGTTTACTACTGATTTCAGAATTGTTTTACTATACCATTCCCGGGAAATGTATGATTGATGCCAAATTTTGTGCACAGAGCTACCTGGGCTCCTCTTGTCAGCCGTAGCAGTGGATAAACTTGGTCGTAAGCTATCAATGTCGATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAACATTCTATCTGCCTGAAGACCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATTTATGCCCCAGAGGTAATGTCTTTATGCAATATATTTTAATTAATTTTGAATGATCTGGTTGAAGCAGAGTTTTTGAGAGAAATCTTGTGCATTCTTCGGTAGAAAGAAGCTAAACCTATTCTATACTGTTGTTGAATATTAAGATAAGTACTATTGTATAGCAATTGGTAAAAGTCCAATCCAATAAGACTACTAAAATATGAAGCTTCTGCATCAATAAGAAGAATGTTATTATCTTAAGGGGTTGCTAACACGTGTCTTAAGAGCATATAATGCAAAGTATCAATTAAAAAGTACAGCATTATTAACTTCAAATGGTGTATTTTTCGTGAAACATTTATGTGTTTTATTTCTTAACCAATTCTTTTACGGAATTTGTTAGCATTTGCATTATTTCCTTACAAAGTTAGTTCTCTGTGTTTGTTACATAGAAGTGCTCCTAGAAAAAATAAAGCAAATTATGGATGAACTAGTCCTCTTTAAGAATTGTCAAAACAAATGCAAACTATACCTGGCTTTAAATTACTCCCTACCTCATTGTTTTTGAATTAACTGTTAAAACTAATAAGTTACCACAAAGAAAAAAGGTCTCACCAGTTATTAGATAGGAACTATTCGTTTATATACTTTCGTCATGTATAAGACATGGTTTCACAGCAATGTTTTTCGGTCTAATTCTTCTTTATAAATGGTGGAAGTTAACATGTGCAAGATTTATATGAACTGCAGATATATCCCACATCAGTCAGAACCACCGGTGTCGGAGTCGCAAGCTCAGTGGGTAGAATTGGTGGAATGTTATGTCCATTGGTAGCAGTGGGTTTAGTACACGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGTAATTGTAGCTCTTGTTTCAGGAATATGTGTTATGTTCTTTCCGTTTGAGACCATGGGCCAAGAACTGCAAGATACTGTGTCAAGTATAAAGCAGACCGACGATGTGTAG
Protein sequence

>MS.gene34193.t1

MTGEEVEGSSSSSSYTVDEALITLGFGNFQILVLVYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITSVVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTTEATNVLETIARLNGKKLPSGVLISDNQIELQKIDNPSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTSELKRNSKCIPDKLQTEKSQDVSYKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFVIVALVSGICVMFFPFETMGQELQDTVSSIKQTDDV