Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34336.t1 | RHN50927.1 | 93.9 | 605 | 26 | 2 | 1 | 595 | 1 | 604 | 0.00E+00 | 1102.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34336.t1 | Q9FLV9 | 52.8 | 633 | 204 | 13 | 17 | 579 | 14 | 621 | 1.4e-163 | 577.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34336.t1 | A0A396HJ49 | 93.9 | 605 | 26 | 2 | 1 | 595 | 1 | 604 | 0.0e+00 | 1102.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052011 | MS.gene34336 | 0.806944 | 6.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34336.t1 | MTR_6g045200 | 94.380 | 605 | 23 | 2 | 1 | 595 | 1 | 604 | 0.0 | 1157 |
| MS.gene34336.t1 | MTR_6g034030 | 86.851 | 616 | 56 | 6 | 1 | 594 | 1 | 613 | 0.0 | 1068 |
| MS.gene34336.t1 | MTR_0549s0020 | 95.038 | 524 | 16 | 1 | 64 | 577 | 1 | 524 | 0.0 | 1020 |
| MS.gene34336.t1 | MTR_6g034030 | 85.386 | 479 | 45 | 6 | 1 | 457 | 1 | 476 | 0.0 | 811 |
| MS.gene34336.t1 | MTR_4g101880 | 51.340 | 485 | 206 | 9 | 125 | 592 | 85 | 556 | 5.46e-160 | 469 |
| MS.gene34336.t1 | MTR_0549s0010 | 86.058 | 208 | 18 | 2 | 64 | 261 | 1 | 207 | 3.49e-119 | 352 |
| MS.gene34336.t1 | MTR_4g049640 | 43.408 | 311 | 165 | 4 | 223 | 523 | 53 | 362 | 1.39e-66 | 221 |
| MS.gene34336.t1 | MTR_3g112530 | 41.411 | 326 | 178 | 6 | 223 | 538 | 51 | 373 | 9.37e-63 | 212 |
| MS.gene34336.t1 | MTR_4g132400 | 35.077 | 325 | 201 | 5 | 208 | 522 | 32 | 356 | 9.18e-56 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34336.t1 | AT5G24030 | 53.302 | 636 | 196 | 15 | 17 | 579 | 14 | 621 | 0.0 | 618 |
| MS.gene34336.t1 | AT4G27970 | 59.877 | 486 | 163 | 8 | 108 | 582 | 41 | 505 | 0.0 | 567 |
| MS.gene34336.t1 | AT4G27970 | 59.877 | 486 | 163 | 8 | 108 | 582 | 41 | 505 | 0.0 | 567 |
| MS.gene34336.t1 | AT5G24030 | 52.783 | 521 | 149 | 13 | 17 | 467 | 14 | 507 | 7.41e-169 | 490 |
| MS.gene34336.t1 | AT4G27970 | 64.305 | 367 | 127 | 3 | 225 | 590 | 1 | 364 | 1.39e-164 | 474 |
| MS.gene34336.t1 | AT4G27970 | 64.305 | 367 | 127 | 3 | 225 | 590 | 1 | 364 | 1.39e-164 | 474 |
| MS.gene34336.t1 | AT4G27970 | 63.435 | 361 | 104 | 5 | 108 | 458 | 41 | 383 | 1.87e-155 | 451 |
| MS.gene34336.t1 | AT4G27970 | 63.435 | 361 | 104 | 5 | 108 | 458 | 41 | 383 | 1.87e-155 | 451 |
| MS.gene34336.t1 | AT1G12480 | 55.294 | 425 | 169 | 5 | 146 | 549 | 102 | 526 | 1.26e-154 | 456 |
| MS.gene34336.t1 | AT1G62280 | 39.542 | 306 | 176 | 6 | 223 | 520 | 46 | 350 | 1.06e-68 | 228 |
| MS.gene34336.t1 | AT1G62262 | 37.255 | 306 | 175 | 5 | 223 | 520 | 46 | 342 | 2.51e-61 | 207 |
Find 116 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTAGTGATGGAGTTTC+TGG | 0.102710 | 6.4:+5114040 | None:intergenic |
| CCATAAGATTAGGTTTATTT+TGG | 0.111313 | 6.4:+5112796 | None:intergenic |
| AGGAGTCTTACTTTGGAAAT+TGG | 0.151569 | 6.4:+5113959 | None:intergenic |
| GCAACCGAATATTCTTATTT+TGG | 0.160615 | 6.4:+5111410 | None:intergenic |
| AATGACTTAGTGACAATATT+TGG | 0.219874 | 6.4:+5111710 | None:intergenic |
| ATTGGTTGAGACTTGAATTT+TGG | 0.251980 | 6.4:+5113253 | None:intergenic |
| ACCAAGAATGTTTCCTTTAG+TGG | 0.275047 | 6.4:-5113340 | MS.gene34336:CDS |
| TCCACTAAAGGAAACATTCT+TGG | 0.287959 | 6.4:+5113339 | None:intergenic |
| TGTCTCGAGCTTAAGATTTA+CGG | 0.289775 | 6.4:-5112554 | MS.gene34336:CDS |
| ATGGCAATAGCAATGTCATT+AGG | 0.310404 | 6.4:+5111596 | None:intergenic |
| TGTTGGTAAGTAACTCCTTT+TGG | 0.316133 | 6.4:+5113229 | None:intergenic |
| AGCTCCTAGTGTTGCTTCAA+TGG | 0.322868 | 6.4:-5112285 | MS.gene34336:CDS |
| TTAGCAGCCAAGCAATTCTT+TGG | 0.324898 | 6.4:-5112865 | MS.gene34336:CDS |
| CCAAAATAAACCTAATCTTA+TGG | 0.332000 | 6.4:-5112796 | MS.gene34336:CDS |
| TTTCAATCTCTTTGGAGTCT+TGG | 0.340201 | 6.4:+5111519 | None:intergenic |
| GGGAGTTATGTGAAGGAATT+CGG | 0.343526 | 6.4:+5112817 | None:intergenic |
| GGAGTCTTACTTTGGAAATT+GGG | 0.353731 | 6.4:+5113960 | None:intergenic |
| CTAGTGTTGCTTCAATGGCT+TGG | 0.355081 | 6.4:-5112280 | MS.gene34336:CDS |
| ATCTCTATGGTACATTCTTA+TGG | 0.359149 | 6.4:-5112588 | MS.gene34336:CDS |
| TCAAATCATTTATCAGTTGT+TGG | 0.360276 | 6.4:-5112482 | MS.gene34336:CDS |
| CCAACAGCAAAGAAGAAAAT+TGG | 0.369223 | 6.4:+5112410 | None:intergenic |
| AACACTGGATGTAGCTCTTT+AGG | 0.372096 | 6.4:+5112323 | None:intergenic |
| TAGTGTTGCTTCAATGGCTT+GGG | 0.373598 | 6.4:-5112279 | MS.gene34336:CDS |
| GAGAATATAGACAGCGAAAA+TGG | 0.378577 | 6.4:+5112748 | None:intergenic |
| CTTACTTTGGAAATTGGGCT+TGG | 0.379734 | 6.4:+5113965 | None:intergenic |
| CTCTTTAGGTAGTGTTGCAT+TGG | 0.379987 | 6.4:+5112337 | None:intergenic |
| AAAACCTACATCAATCTCTA+TGG | 0.381498 | 6.4:-5112601 | MS.gene34336:CDS |
| CGGAGATGTACCATAAGATT+AGG | 0.387385 | 6.4:+5112786 | None:intergenic |
| ATAGGGCATTACCTGTTGAT+AGG | 0.387872 | 6.4:-5113018 | MS.gene34336:CDS |
| ATTGTTCCTTTATTTCTCAT+TGG | 0.389787 | 6.4:-5112204 | MS.gene34336:intron |
| CGGTTCCCCGTTTCATCGTT+CGG | 0.391099 | 6.4:-5112902 | MS.gene34336:CDS |
| TCAGTTGTTGGAAACTTTGT+TGG | 0.392188 | 6.4:-5112470 | MS.gene34336:CDS |
| AACTTACCAATGAGAAATAA+AGG | 0.395497 | 6.4:+5112198 | None:intergenic |
| AACAATGGCCGTTTCTTCTC+CGG | 0.397146 | 6.4:-5112922 | MS.gene34336:CDS |
| AATCTCAACATTCACGGTTA+TGG | 0.397308 | 6.4:-5111669 | MS.gene34336:CDS |
| CTTTCTCCTTCTATCACTAA+TGG | 0.397340 | 6.4:+5111577 | None:intergenic |
| CACTGGTTAGGGTTCAGATA+TGG | 0.404152 | 6.4:-5111545 | MS.gene34336:CDS |
| ACGCTACAAGAAGCTTTGAT+AGG | 0.404558 | 6.4:-5113036 | MS.gene34336:CDS |
| AAGCCACATAAACACTGGTT+AGG | 0.404899 | 6.4:-5111557 | MS.gene34336:CDS |
| CTATTGCCATTAGTGATAGA+AGG | 0.408483 | 6.4:-5111583 | MS.gene34336:CDS |
| TGGCAATAGCAATGTCATTA+GGG | 0.415303 | 6.4:+5111597 | None:intergenic |
| CGGTGGTAGGCGATGTGGCT+AGG | 0.417492 | 6.4:+5112837 | None:intergenic |
| GACTCGTTCAAAACATGGTC+TGG | 0.417748 | 6.4:-5113130 | MS.gene34336:CDS |
| ATATGCTTCTACAGGCTGTC+AGG | 0.429218 | 6.4:-5111939 | MS.gene34336:intron |
| CATATACCGAACGATGAAAC+GGG | 0.430087 | 6.4:+5112896 | None:intergenic |
| ATGGCTTGGGCTAAGATTCA+AGG | 0.432952 | 6.4:-5112266 | MS.gene34336:CDS |
| GCAATTGCTGCACCAGTCAT+TGG | 0.435263 | 6.4:+5111758 | None:intergenic |
| GAACACTGATGATAGTAGTT+TGG | 0.436563 | 6.4:-5111480 | MS.gene34336:CDS |
| TTAAGCTCGAGACATAATAT+TGG | 0.444167 | 6.4:+5112563 | None:intergenic |
| GCATCAAAATACCTATCAAC+AGG | 0.446386 | 6.4:+5113007 | None:intergenic |
| GCATATACCGAACGATGAAA+CGG | 0.446798 | 6.4:+5112895 | None:intergenic |
| TTAGGTAGTGTTGCATTGGT+TGG | 0.448645 | 6.4:+5112341 | None:intergenic |
| ACAACTGATAAATGATTTGA+AGG | 0.451534 | 6.4:+5112485 | None:intergenic |
| AACCCTAACCAGTGTTTATG+TGG | 0.454199 | 6.4:+5111554 | None:intergenic |
| GGCTCTAATCTCAACATTCA+CGG | 0.461413 | 6.4:-5111675 | MS.gene34336:CDS |
| AACTTTGTTGGAGCGTTACT+TGG | 0.463926 | 6.4:-5112458 | MS.gene34336:CDS |
| CGAACGATGAAACGGGGAAC+CGG | 0.472041 | 6.4:+5112903 | None:intergenic |
| CTACTTCGAAGCAGTTCGTC+GGG | 0.477986 | 6.4:-5112714 | MS.gene34336:CDS |
| CGAAAGCCGCCTTTGTCCAC+CGG | 0.482961 | 6.4:+5112520 | None:intergenic |
| AGCGTTACTTGGTGCATCGA+TGG | 0.486089 | 6.4:-5112447 | MS.gene34336:CDS |
| GATATATACTTTATTAGTGA+TGG | 0.486944 | 6.4:+5114031 | None:intergenic |
| GCATCGTTTGAGGACGGTTG+TGG | 0.487768 | 6.4:+5111446 | None:intergenic |
| ACCAGTCATTGGAAAAGTAT+AGG | 0.490366 | 6.4:+5111769 | None:intergenic |
| GAGTTTGAGAACCATCTTGT+TGG | 0.490450 | 6.4:+5113212 | None:intergenic |
| AAGAAGAAGTTAACACGGAT+TGG | 0.491885 | 6.4:+5112680 | None:intergenic |
| TAAGTCATTGTGTGTTGCAT+TGG | 0.500305 | 6.4:-5111696 | MS.gene34336:CDS |
| CCATCTTGTGCATTTCCACT+CGG | 0.503604 | 6.4:+5113064 | None:intergenic |
| AGCTTAAGATTTACGGACAA+TGG | 0.504721 | 6.4:-5112547 | MS.gene34336:CDS |
| GGTGGTAGGCGATGTGGCTA+GGG | 0.515104 | 6.4:+5112838 | None:intergenic |
| ACGGGGAACCGGAGAAGAAA+CGG | 0.516364 | 6.4:+5112914 | None:intergenic |
| GAACTGCTTCGAAGTAGAAA+AGG | 0.521206 | 6.4:+5112720 | None:intergenic |
| CAAGCCATTGAAGCAACACT+AGG | 0.534868 | 6.4:+5112281 | None:intergenic |
| ATTTACGGACAATGGATGTC+CGG | 0.537992 | 6.4:-5112539 | MS.gene34336:CDS |
| TGTACCATAGAGATTGATGT+AGG | 0.539740 | 6.4:+5112597 | None:intergenic |
| CGCTACAAGAAGCTTTGATA+GGG | 0.540378 | 6.4:-5113035 | MS.gene34336:CDS |
| TGAGTTTCTTTATAACAAAG+TGG | 0.544697 | 6.4:+5113388 | None:intergenic |
| GCGTTACTTGGTGCATCGAT+GGG | 0.546328 | 6.4:-5112446 | MS.gene34336:CDS |
| AAGTCTCAACCAATGCCAAA+AGG | 0.547948 | 6.4:-5113244 | MS.gene34336:CDS |
| GTCAGGATCAATTTCTTCAG+AGG | 0.548320 | 6.4:-5111922 | MS.gene34336:CDS |
| GCATCGATGGGACTAATTGA+AGG | 0.552203 | 6.4:-5112434 | MS.gene34336:CDS |
| GGAGTTACTTACCAACAAGA+TGG | 0.552350 | 6.4:-5113223 | MS.gene34336:CDS |
| TGGACAAAGGCGGCTTTCGA+AGG | 0.557619 | 6.4:-5112516 | MS.gene34336:CDS |
| TCATCGTTCGGTATATGCCT+CGG | 0.559454 | 6.4:-5112890 | MS.gene34336:CDS |
| AGAAGTTAACACGGATTGGA+TGG | 0.561531 | 6.4:+5112684 | None:intergenic |
| AGCCACATAAACACTGGTTA+GGG | 0.563075 | 6.4:-5111556 | MS.gene34336:CDS |
| TTCAAAACATGGTCTGGTGG+AGG | 0.567930 | 6.4:-5113124 | MS.gene34336:CDS |
| TCTACTTCGAAGCAGTTCGT+CGG | 0.581441 | 6.4:-5112715 | MS.gene34336:CDS |
| ACAAAGGCGGCTTTCGAAGG+TGG | 0.582957 | 6.4:-5112513 | MS.gene34336:CDS |
| ATGTGAAGGAATTCGGTGGT+AGG | 0.587839 | 6.4:+5112824 | None:intergenic |
| AATCGTAATTATAATCAACC+TGG | 0.590471 | 6.4:-5113181 | MS.gene34336:CDS |
| GATTTGACTCGTTCAAAACA+TGG | 0.592105 | 6.4:-5113135 | MS.gene34336:CDS |
| ATTAGTGATGGAGTTTCTGG+AGG | 0.593685 | 6.4:+5114043 | None:intergenic |
| TGCTACCTCATGACAAACAA+TGG | 0.595420 | 6.4:-5112937 | MS.gene34336:CDS |
| AATGGATGTCCGGTGGACAA+AGG | 0.597830 | 6.4:-5112529 | MS.gene34336:CDS |
| TGATCGGCATCGTTTGAGGA+CGG | 0.600030 | 6.4:+5111440 | None:intergenic |
| GGCATGCTGACAGACATTGA+AGG | 0.604528 | 6.4:+5113409 | None:intergenic |
| AACGGCCATTGTTTGTCATG+AGG | 0.606151 | 6.4:+5112932 | None:intergenic |
| CAACTGATAAATGATTTGAA+GGG | 0.610598 | 6.4:+5112486 | None:intergenic |
| TTAACTTCTTCTTCGCACCG+TGG | 0.611868 | 6.4:-5112670 | MS.gene34336:CDS |
| AGATGGTTCTCAAACTCGAA+AGG | 0.612078 | 6.4:-5113206 | MS.gene34336:CDS |
| TCAGACATTGCAATTCCTGA+TGG | 0.614715 | 6.4:+5113289 | None:intergenic |
| TCGTTCAAAACATGGTCTGG+TGG | 0.618207 | 6.4:-5113127 | MS.gene34336:CDS |
| CCGAGTGGAAATGCACAAGA+TGG | 0.618656 | 6.4:-5113064 | MS.gene34336:CDS |
| GAATTCGGTGGTAGGCGATG+TGG | 0.633433 | 6.4:+5112832 | None:intergenic |
| GGAGAAAGCCACATAAACAC+TGG | 0.639503 | 6.4:-5111562 | MS.gene34336:CDS |
| TACGGACAATGGATGTCCGG+TGG | 0.646861 | 6.4:-5112536 | MS.gene34336:CDS |
| GGATGTCCGGTGGACAAAGG+CGG | 0.650208 | 6.4:-5112526 | MS.gene34336:CDS |
| GCAACAAAGAGAAAGAACAC+TGG | 0.662189 | 6.4:+5112308 | None:intergenic |
| AGTTATGTGAAGGAATTCGG+TGG | 0.705029 | 6.4:+5112820 | None:intergenic |
| TTGCTTGGCTGCTAACTCCG+AGG | 0.712685 | 6.4:+5112873 | None:intergenic |
| GTGCGAAGAAGAAGTTAACA+CGG | 0.725245 | 6.4:+5112675 | None:intergenic |
| ATATACCGAACGATGAAACG+GGG | 0.734350 | 6.4:+5112897 | None:intergenic |
| AATCTTATGGTACATCTCCG+CGG | 0.740138 | 6.4:-5112783 | MS.gene34336:CDS |
| AATGGTAGCTATAAGTACCG+CGG | 0.745035 | 6.4:+5112766 | None:intergenic |
| CTACGTGGAAAAGAACCGAG+TGG | 0.750541 | 6.4:-5113079 | MS.gene34336:CDS |
| AGACAATTATCGATTCTACG+TGG | 0.759063 | 6.4:-5113094 | MS.gene34336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATAATATAACTAGAT+AGG | + | chr6.4:5113639-5113658 | None:intergenic | 10.0% |
| !! | TTAAATAATATAACTAGATA+GGG | + | chr6.4:5113638-5113657 | None:intergenic | 10.0% |
| !!! | GATATTAAATTTATTTTTTG+AGG | - | chr6.4:5113412-5113431 | MS.gene34336:CDS | 10.0% |
| !!! | TATTAAATTTATTTTTTGAG+GGG | - | chr6.4:5113414-5113433 | MS.gene34336:CDS | 10.0% |
| !! | TAAATAATATAACTAGATAG+GGG | + | chr6.4:5113637-5113656 | None:intergenic | 15.0% |
| !! | TAACAAAAGATAAAATAAGT+TGG | + | chr6.4:5111930-5111949 | None:intergenic | 15.0% |
| !!! | AACAATTATGCATATTTTTT+TGG | + | chr6.4:5113523-5113542 | None:intergenic | 15.0% |
| !!! | ATTAAATTTATTTTTTGAGG+GGG | - | chr6.4:5113415-5113434 | MS.gene34336:CDS | 15.0% |
| !!! | TATCTTTTGTTATAGAAATA+TGG | - | chr6.4:5111760-5111779 | MS.gene34336:CDS | 15.0% |
| !! | AAAATAAATTTAATATCGCG+TGG | + | chr6.4:5113409-5113428 | None:intergenic | 20.0% |
| !! | GATATATACTTTATTAGTGA+TGG | + | chr6.4:5111481-5111500 | None:intergenic | 20.0% |
| !! | GCAATAAAAATGACTTAAAA+AGG | + | chr6.4:5111573-5111592 | None:intergenic | 20.0% |
| !!! | AATTATGCATATTTTTTTGG+TGG | + | chr6.4:5113520-5113539 | None:intergenic | 20.0% |
| !!! | ATTATGCATATTTTTTTGGT+GGG | + | chr6.4:5113519-5113538 | None:intergenic | 20.0% |
| !!! | CATAAGATTAGGTTTATTTT+GGG | + | chr6.4:5112715-5112734 | None:intergenic | 20.0% |
| !!! | TTATTTTGGCAAATTTTGAT+CGG | + | chr6.4:5114088-5114107 | None:intergenic | 20.0% |
| !!! | TTTTTCCATGTTTTTTCAAT+AGG | - | chr6.4:5112045-5112064 | MS.gene34336:intron | 20.0% |
| ! | AACTTACCAATGAGAAATAA+AGG | + | chr6.4:5113314-5113333 | None:intergenic | 25.0% |
| ! | AATCGTAATTATAATCAACC+TGG | - | chr6.4:5112328-5112347 | MS.gene34336:CDS | 25.0% |
| ! | AATGACTTAGTGACAATATT+TGG | + | chr6.4:5113802-5113821 | None:intergenic | 25.0% |
| ! | ACAACTGATAAATGATTTGA+AGG | + | chr6.4:5113027-5113046 | None:intergenic | 25.0% |
| ! | ACTTTCCTATTGAAAAAACA+TGG | + | chr6.4:5112053-5112072 | None:intergenic | 25.0% |
| ! | CAACTGATAAATGATTTGAA+GGG | + | chr6.4:5113026-5113045 | None:intergenic | 25.0% |
| ! | CCAAAATAAACCTAATCTTA+TGG | - | chr6.4:5112713-5112732 | MS.gene34336:CDS | 25.0% |
| ! | GAAATATGGTATGTTTCAAT+TGG | - | chr6.4:5111774-5111793 | MS.gene34336:CDS | 25.0% |
| ! | TATATGTAAGCGCTTAATTA+AGG | - | chr6.4:5111975-5111994 | MS.gene34336:intron | 25.0% |
| ! | TATCATTGAAATTTACTCAC+TGG | - | chr6.4:5113543-5113562 | MS.gene34336:intron | 25.0% |
| ! | TCAAATCATTTATCAGTTGT+TGG | - | chr6.4:5113027-5113046 | MS.gene34336:CDS | 25.0% |
| ! | TGAGTTTCTTTATAACAAAG+TGG | + | chr6.4:5112124-5112143 | None:intergenic | 25.0% |
| !! | AATAACATTTTCTCCACTAA+AGG | + | chr6.4:5112185-5112204 | None:intergenic | 25.0% |
| !! | ATTGTTCCTTTATTTCTCAT+TGG | - | chr6.4:5113305-5113324 | MS.gene34336:CDS | 25.0% |
| !! | CAAGTAATTTTCAATCTCTT+TGG | + | chr6.4:5114001-5114020 | None:intergenic | 25.0% |
| !! | CCATAAGATTAGGTTTATTT+TGG | + | chr6.4:5112716-5112735 | None:intergenic | 25.0% |
| !! | TCTCTAAACATTTTTATTCC+AGG | + | chr6.4:5112349-5112368 | None:intergenic | 25.0% |
| !!! | ATTCAAGGTTCTTTTGATTA+TGG | - | chr6.4:5113258-5113277 | MS.gene34336:CDS | 25.0% |
| !!! | GAGGAATTCTAAAATGATAT+AGG | + | chr6.4:5111616-5111635 | None:intergenic | 25.0% |
| !!! | TAGATTTTAGTTATGTCACA+AGG | + | chr6.4:5112018-5112037 | None:intergenic | 25.0% |
| !!! | TTATGCATATTTTTTTGGTG+GGG | + | chr6.4:5113518-5113537 | None:intergenic | 25.0% |
| !!! | TTTCATAAGCTATTTTGAAG+AGG | + | chr6.4:5111907-5111926 | None:intergenic | 25.0% |
| AAAACCTACATCAATCTCTA+TGG | - | chr6.4:5112908-5112927 | MS.gene34336:CDS | 30.0% | |
| ATCTCTATGGTACATTCTTA+TGG | - | chr6.4:5112921-5112940 | MS.gene34336:CDS | 30.0% | |
| CTTAAAAAGGAGTCTTACTT+TGG | + | chr6.4:5111560-5111579 | None:intergenic | 30.0% | |
| GACTTAAGAGTTTCTAATTC+TGG | + | chr6.4:5112538-5112557 | None:intergenic | 30.0% | |
| GAGACTGTTTGTATTACTTA+CGG | - | chr6.4:5111653-5111672 | MS.gene34336:CDS | 30.0% | |
| TCCAAATCATGAACATAAAG+AGG | + | chr6.4:5111635-5111654 | None:intergenic | 30.0% | |
| TCCTCTTTATGTTCATGATT+TGG | - | chr6.4:5111631-5111650 | MS.gene34336:CDS | 30.0% | |
| TTAAGCTCGAGACATAATAT+TGG | + | chr6.4:5112949-5112968 | None:intergenic | 30.0% | |
| TTTAATATCGCGTGGATAAT+TGG | + | chr6.4:5113401-5113420 | None:intergenic | 30.0% | |
| ! | ATCAAAGATGATTTTCCATC+AGG | - | chr6.4:5112205-5112224 | MS.gene34336:CDS | 30.0% |
| ! | ATTGGTTGAGACTTGAATTT+TGG | + | chr6.4:5112259-5112278 | None:intergenic | 30.0% |
| ! | TAGAGATTGATGTAGGTTTT+TGG | + | chr6.4:5112908-5112927 | None:intergenic | 30.0% |
| ! | TTTACAGATTTTCTCTTGCA+TGG | - | chr6.4:5113713-5113732 | MS.gene34336:intron | 30.0% |
| ! | TTTATTAGTGATGGAGTTTC+TGG | + | chr6.4:5111472-5111491 | None:intergenic | 30.0% |
| !! | GTTCTTTTGATTATGGATCA+AGG | - | chr6.4:5113265-5113284 | MS.gene34336:CDS | 30.0% |
| !!! | TGATAGGTATTTTGATGCAT+TGG | - | chr6.4:5112507-5112526 | MS.gene34336:CDS | 30.0% |
| !!! | TTATTTTGGGAGTTATGTGA+AGG | + | chr6.4:5112702-5112721 | None:intergenic | 30.0% |
| !!! | TTGATGTAGGTTTTTGGTTA+CGG | + | chr6.4:5112902-5112921 | None:intergenic | 30.0% |
| AAAAACAAGAGAGCTATCCA+CGG | + | chr6.4:5112859-5112878 | None:intergenic | 35.0% | |
| AAGAAGAAGTTAACACGGAT+TGG | + | chr6.4:5112832-5112851 | None:intergenic | 35.0% | |
| AAGCTATCCTCAAGCATTTA+TGG | + | chr6.4:5111697-5111716 | None:intergenic | 35.0% | |
| AATCTCAACATTCACGGTTA+TGG | - | chr6.4:5113840-5113859 | MS.gene34336:intron | 35.0% | |
| AATGCAATAGTTCATCGCAA+AGG | + | chr6.4:5113484-5113503 | None:intergenic | 35.0% | |
| ACCAAGAATGTTTCCTTTAG+TGG | - | chr6.4:5112169-5112188 | MS.gene34336:intron | 35.0% | |
| AGCTTAAGATTTACGGACAA+TGG | - | chr6.4:5112962-5112981 | MS.gene34336:intron | 35.0% | |
| ATGGCAATAGCAATGTCATT+AGG | + | chr6.4:5113916-5113935 | None:intergenic | 35.0% | |
| CCAACAGCAAAGAAGAAAAT+TGG | + | chr6.4:5113102-5113121 | None:intergenic | 35.0% | |
| CTATTGCCATTAGTGATAGA+AGG | - | chr6.4:5113926-5113945 | MS.gene34336:intron | 35.0% | |
| CTTTCTCCTTCTATCACTAA+TGG | + | chr6.4:5113935-5113954 | None:intergenic | 35.0% | |
| GAACACTGATGATAGTAGTT+TGG | - | chr6.4:5114029-5114048 | MS.gene34336:CDS | 35.0% | |
| GAGAATATAGACAGCGAAAA+TGG | + | chr6.4:5112764-5112783 | None:intergenic | 35.0% | |
| GCATCAAAATACCTATCAAC+AGG | + | chr6.4:5112505-5112524 | None:intergenic | 35.0% | |
| TAAGTCATTGTGTGTTGCAT+TGG | - | chr6.4:5113813-5113832 | MS.gene34336:intron | 35.0% | |
| TCAGTTGTTGGAAACTTTGT+TGG | - | chr6.4:5113039-5113058 | MS.gene34336:CDS | 35.0% | |
| TCCACTAAAGGAAACATTCT+TGG | + | chr6.4:5112173-5112192 | None:intergenic | 35.0% | |
| TGGCAATAGCAATGTCATTA+GGG | + | chr6.4:5113915-5113934 | None:intergenic | 35.0% | |
| TGTACCATAGAGATTGATGT+AGG | + | chr6.4:5112915-5112934 | None:intergenic | 35.0% | |
| TGTCTCGAGCTTAAGATTTA+CGG | - | chr6.4:5112955-5112974 | MS.gene34336:intron | 35.0% | |
| ! | ACCAGTCATTGGAAAAGTAT+AGG | + | chr6.4:5113743-5113762 | None:intergenic | 35.0% |
| ! | AGGAGTCTTACTTTGGAAAT+TGG | + | chr6.4:5111553-5111572 | None:intergenic | 35.0% |
| ! | GATTTGACTCGTTCAAAACA+TGG | - | chr6.4:5112374-5112393 | MS.gene34336:CDS | 35.0% |
| ! | GGAGTCTTACTTTGGAAATT+GGG | + | chr6.4:5111552-5111571 | None:intergenic | 35.0% |
| ! | TAAGTAACTCCTTTTGGCAT+TGG | + | chr6.4:5112277-5112296 | None:intergenic | 35.0% |
| !! | AGACAATTATCGATTCTACG+TGG | - | chr6.4:5112415-5112434 | MS.gene34336:CDS | 35.0% |
| !! | CCAATTTTCTTCTTTGCTGT+TGG | - | chr6.4:5113099-5113118 | MS.gene34336:CDS | 35.0% |
| !! | TGTTGGTAAGTAACTCCTTT+TGG | + | chr6.4:5112283-5112302 | None:intergenic | 35.0% |
| !! | TTATGTCACAAGGTCTTGTT+TGG | + | chr6.4:5112008-5112027 | None:intergenic | 35.0% |
| !! | TTTCAATCTCTTTGGAGTCT+TGG | + | chr6.4:5113993-5114012 | None:intergenic | 35.0% |
| !!! | AGGTATTTTGATGCATTGGA+AGG | - | chr6.4:5112511-5112530 | MS.gene34336:CDS | 35.0% |
| !!! | CTGGTTTTATATGCTTCTAC+AGG | - | chr6.4:5113562-5113581 | MS.gene34336:intron | 35.0% |
| !!! | GACTTGAATTTTGGTTGTCT+TGG | + | chr6.4:5112250-5112269 | None:intergenic | 35.0% |
| !!! | TTGAATTTTGGTTGTCTTGG+AGG | + | chr6.4:5112247-5112266 | None:intergenic | 35.0% |
| AACACTGGATGTAGCTCTTT+AGG | + | chr6.4:5113189-5113208 | None:intergenic | 40.0% | |
| AACCCTAACCAGTGTTTATG+TGG | + | chr6.4:5113958-5113977 | None:intergenic | 40.0% | |
| AAGTCTCAACCAATGCCAAA+AGG | - | chr6.4:5112265-5112284 | MS.gene34336:CDS | 40.0% | |
| AATCTTATGGTACATCTCCG+CGG | - | chr6.4:5112726-5112745 | MS.gene34336:CDS | 40.0% | |
| AGATGGTTCTCAAACTCGAA+AGG | - | chr6.4:5112303-5112322 | MS.gene34336:CDS | 40.0% | |
| AGTTATGTGAAGGAATTCGG+TGG | + | chr6.4:5112692-5112711 | None:intergenic | 40.0% | |
| ATATACCGAACGATGAAACG+GGG | + | chr6.4:5112615-5112634 | None:intergenic | 40.0% | |
| ATTTACGGACAATGGATGTC+CGG | - | chr6.4:5112970-5112989 | MS.gene34336:intron | 40.0% | |
| CAATAGCAAGCTATTGTGGT+GGG | + | chr6.4:5113445-5113464 | None:intergenic | 40.0% | |
| CATATACCGAACGATGAAAC+GGG | + | chr6.4:5112616-5112635 | None:intergenic | 40.0% | |
| CGGAGATGTACCATAAGATT+AGG | + | chr6.4:5112726-5112745 | None:intergenic | 40.0% | |
| CTCTTTAGGTAGTGTTGCAT+TGG | + | chr6.4:5113175-5113194 | None:intergenic | 40.0% | |
| GAACTGCTTCGAAGTAGAAA+AGG | + | chr6.4:5112792-5112811 | None:intergenic | 40.0% | |
| GACATGTCCATAAATGCTTG+AGG | - | chr6.4:5111687-5111706 | MS.gene34336:CDS | 40.0% | |
| GAGTTTGAGAACCATCTTGT+TGG | + | chr6.4:5112300-5112319 | None:intergenic | 40.0% | |
| GCAACAAAGAGAAAGAACAC+TGG | + | chr6.4:5113204-5113223 | None:intergenic | 40.0% | |
| GCATATACCGAACGATGAAA+CGG | + | chr6.4:5112617-5112636 | None:intergenic | 40.0% | |
| GGAGTTACTTACCAACAAGA+TGG | - | chr6.4:5112286-5112305 | MS.gene34336:CDS | 40.0% | |
| GGGAGTTATGTGAAGGAATT+CGG | + | chr6.4:5112695-5112714 | None:intergenic | 40.0% | |
| GTCAGGATCAATTTCTTCAG+AGG | - | chr6.4:5113587-5113606 | MS.gene34336:intron | 40.0% | |
| GTGCGAAGAAGAAGTTAACA+CGG | + | chr6.4:5112837-5112856 | None:intergenic | 40.0% | |
| TCAGACATTGCAATTCCTGA+TGG | + | chr6.4:5112223-5112242 | None:intergenic | 40.0% | |
| TGCTACCTCATGACAAACAA+TGG | - | chr6.4:5112572-5112591 | MS.gene34336:CDS | 40.0% | |
| TTAGCAGCCAAGCAATTCTT+TGG | - | chr6.4:5112644-5112663 | MS.gene34336:CDS | 40.0% | |
| ! | AACTTTGTTGGAGCGTTACT+TGG | - | chr6.4:5113051-5113070 | MS.gene34336:CDS | 40.0% |
| ! | AAGCCACATAAACACTGGTT+AGG | - | chr6.4:5113952-5113971 | MS.gene34336:intron | 40.0% |
| ! | AATGGTAGCTATAAGTACCG+CGG | + | chr6.4:5112746-5112765 | None:intergenic | 40.0% |
| ! | ACAGATTTTCTCTTGCATGG+TGG | - | chr6.4:5113716-5113735 | MS.gene34336:intron | 40.0% |
| ! | ACGCTACAAGAAGCTTTGAT+AGG | - | chr6.4:5112473-5112492 | MS.gene34336:CDS | 40.0% |
| ! | AGCCACATAAACACTGGTTA+GGG | - | chr6.4:5113953-5113972 | MS.gene34336:intron | 40.0% |
| ! | ATAGGGCATTACCTGTTGAT+AGG | - | chr6.4:5112491-5112510 | MS.gene34336:CDS | 40.0% |
| ! | ATTAGTGATGGAGTTTCTGG+AGG | + | chr6.4:5111469-5111488 | None:intergenic | 40.0% |
| ! | CAGATTTTCTCTTGCATGGT+GGG | - | chr6.4:5113717-5113736 | MS.gene34336:intron | 40.0% |
| ! | CGCTACAAGAAGCTTTGATA+GGG | - | chr6.4:5112474-5112493 | MS.gene34336:CDS | 40.0% |
| ! | CTTACTTTGGAAATTGGGCT+TGG | + | chr6.4:5111547-5111566 | None:intergenic | 40.0% |
| ! | GATGAACTATTGCATTGACC+TGG | - | chr6.4:5113488-5113507 | MS.gene34336:intron | 40.0% |
| ! | GCCTATACTTTTCCAATGAC+TGG | - | chr6.4:5113739-5113758 | MS.gene34336:intron | 40.0% |
| ! | GGCTCTAATCTCAACATTCA+CGG | - | chr6.4:5113834-5113853 | MS.gene34336:intron | 40.0% |
| ! | GGGTTTTCCAAAGAATTGCT+TGG | + | chr6.4:5112654-5112673 | None:intergenic | 40.0% |
| ! | TTAGGTAGTGTTGCATTGGT+TGG | + | chr6.4:5113171-5113190 | None:intergenic | 40.0% |
| !! | AGAAGTTAACACGGATTGGA+TGG | + | chr6.4:5112828-5112847 | None:intergenic | 40.0% |
| !! | ATTTTGATCGGCATCGTTTG+AGG | + | chr6.4:5114076-5114095 | None:intergenic | 40.0% |
| !! | CACCACAATAGCTTGCTATT+GGG | - | chr6.4:5113444-5113463 | MS.gene34336:CDS | 40.0% |
| !! | TAGTGTTGCTTCAATGGCTT+GGG | - | chr6.4:5113230-5113249 | MS.gene34336:CDS | 40.0% |
| !!! | GCTCTCTTGTTTTTAGCACT+AGG | - | chr6.4:5112865-5112884 | MS.gene34336:CDS | 40.0% |
| !!! | TGTAGGTTTTTGGTTACGGA+TGG | + | chr6.4:5112898-5112917 | None:intergenic | 40.0% |
| AACAATGGCCGTTTCTTCTC+CGG | - | chr6.4:5112587-5112606 | MS.gene34336:CDS | 45.0% | |
| AACGGCCATTGTTTGTCATG+AGG | + | chr6.4:5112580-5112599 | None:intergenic | 45.0% | |
| AGCACTTGTGAGACTGTTTG+AGG | - | chr6.4:5111823-5111842 | MS.gene34336:intron | 45.0% | |
| ATATGCTTCTACAGGCTGTC+AGG | - | chr6.4:5113570-5113589 | MS.gene34336:intron | 45.0% | |
| CAAGCCATTGAAGCAACACT+AGG | + | chr6.4:5113231-5113250 | None:intergenic | 45.0% | |
| CCAATAGCAAGCTATTGTGG+TGG | + | chr6.4:5113446-5113465 | None:intergenic | 45.0% | |
| CCATCTTGTGCATTTCCACT+CGG | + | chr6.4:5112448-5112467 | None:intergenic | 45.0% | |
| GACCCAATAGCAAGCTATTG+TGG | + | chr6.4:5113449-5113468 | None:intergenic | 45.0% | |
| GACTCGTTCAAAACATGGTC+TGG | - | chr6.4:5112379-5112398 | MS.gene34336:CDS | 45.0% | |
| GGAGAAAGCCACATAAACAC+TGG | - | chr6.4:5113947-5113966 | MS.gene34336:intron | 45.0% | |
| GTCTCACAAGTGCTTATGTC+AGG | + | chr6.4:5111817-5111836 | None:intergenic | 45.0% | |
| TCATCGTTCGGTATATGCCT+CGG | - | chr6.4:5112619-5112638 | MS.gene34336:CDS | 45.0% | |
| TCGTTCAAAACATGGTCTGG+TGG | - | chr6.4:5112382-5112401 | MS.gene34336:CDS | 45.0% | |
| TCTACTTCGAAGCAGTTCGT+CGG | - | chr6.4:5112794-5112813 | MS.gene34336:CDS | 45.0% | |
| TTAACTTCTTCTTCGCACCG+TGG | - | chr6.4:5112839-5112858 | MS.gene34336:CDS | 45.0% | |
| TTCAAAACATGGTCTGGTGG+AGG | - | chr6.4:5112385-5112404 | MS.gene34336:CDS | 45.0% | |
| ! | AACTATTGCATTGACCTGGC+GGG | - | chr6.4:5113492-5113511 | MS.gene34336:intron | 45.0% |
| ! | ATGGCTTGGGCTAAGATTCA+AGG | - | chr6.4:5113243-5113262 | MS.gene34336:CDS | 45.0% |
| ! | ATGTGAAGGAATTCGGTGGT+AGG | + | chr6.4:5112688-5112707 | None:intergenic | 45.0% |
| ! | CACTGGTTAGGGTTCAGATA+TGG | - | chr6.4:5113964-5113983 | MS.gene34336:intron | 45.0% |
| ! | GAACTATTGCATTGACCTGG+CGG | - | chr6.4:5113491-5113510 | MS.gene34336:intron | 45.0% |
| ! | GCATCGATGGGACTAATTGA+AGG | - | chr6.4:5113075-5113094 | MS.gene34336:CDS | 45.0% |
| !! | AGCTCCTAGTGTTGCTTCAA+TGG | - | chr6.4:5113224-5113243 | MS.gene34336:CDS | 45.0% |
| !! | CCACCACAATAGCTTGCTAT+TGG | - | chr6.4:5113443-5113462 | MS.gene34336:CDS | 45.0% |
| !! | CTAGTGTTGCTTCAATGGCT+TGG | - | chr6.4:5113229-5113248 | MS.gene34336:CDS | 45.0% |
| !!! | AGGTTTTTGGTTACGGATGG+AGG | + | chr6.4:5112895-5112914 | None:intergenic | 45.0% |
| !!! | ATATTAAATTTATTTTTTGA+GGG | - | chr6.4:5113413-5113432 | MS.gene34336:CDS | 5.0% |
| AATGGATGTCCGGTGGACAA+AGG | - | chr6.4:5112980-5112999 | MS.gene34336:intron | 50.0% | |
| CCGAGTGGAAATGCACAAGA+TGG | - | chr6.4:5112445-5112464 | MS.gene34336:CDS | 50.0% | |
| CTACGTGGAAAAGAACCGAG+TGG | - | chr6.4:5112430-5112449 | MS.gene34336:CDS | 50.0% | |
| CTACTTCGAAGCAGTTCGTC+GGG | - | chr6.4:5112795-5112814 | MS.gene34336:CDS | 50.0% | |
| GCAATTGCTGCACCAGTCAT+TGG | + | chr6.4:5113754-5113773 | None:intergenic | 50.0% | |
| GGCATGCTGACAGACATTGA+AGG | + | chr6.4:5112103-5112122 | None:intergenic | 50.0% | |
| TGATCGGCATCGTTTGAGGA+CGG | + | chr6.4:5114072-5114091 | None:intergenic | 50.0% | |
| !! | AGCGTTACTTGGTGCATCGA+TGG | - | chr6.4:5113062-5113081 | MS.gene34336:CDS | 50.0% |
| !! | GCGTTACTTGGTGCATCGAT+GGG | - | chr6.4:5113063-5113082 | MS.gene34336:CDS | 50.0% |
| ACAAAGGCGGCTTTCGAAGG+TGG | - | chr6.4:5112996-5113015 | MS.gene34336:intron | 55.0% | |
| ACGGGGAACCGGAGAAGAAA+CGG | + | chr6.4:5112598-5112617 | None:intergenic | 55.0% | |
| CGAACGATGAAACGGGGAAC+CGG | + | chr6.4:5112609-5112628 | None:intergenic | 55.0% | |
| CGGTTCCCCGTTTCATCGTT+CGG | - | chr6.4:5112607-5112626 | MS.gene34336:CDS | 55.0% | |
| GCATCGTTTGAGGACGGTTG+TGG | + | chr6.4:5114066-5114085 | None:intergenic | 55.0% | |
| TACGGACAATGGATGTCCGG+TGG | - | chr6.4:5112973-5112992 | MS.gene34336:intron | 55.0% | |
| TGGACAAAGGCGGCTTTCGA+AGG | - | chr6.4:5112993-5113012 | MS.gene34336:intron | 55.0% | |
| TTGCTTGGCTGCTAACTCCG+AGG | + | chr6.4:5112639-5112658 | None:intergenic | 55.0% | |
| ! | GAATTCGGTGGTAGGCGATG+TGG | + | chr6.4:5112680-5112699 | None:intergenic | 55.0% |
| CGAAAGCCGCCTTTGTCCAC+CGG | + | chr6.4:5112992-5113011 | None:intergenic | 60.0% | |
| GGATGTCCGGTGGACAAAGG+CGG | - | chr6.4:5112983-5113002 | MS.gene34336:intron | 60.0% | |
| GGTGGTAGGCGATGTGGCTA+GGG | + | chr6.4:5112674-5112693 | None:intergenic | 60.0% | |
| !!! | TTTTTTTGGTGGGGCCCGCC+AGG | + | chr6.4:5113509-5113528 | None:intergenic | 60.0% |
| CGGTGGTAGGCGATGTGGCT+AGG | + | chr6.4:5112675-5112694 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 5111424 | 5114107 | 5111424 | ID=MS.gene34336 |
| chr6.4 | mRNA | 5111424 | 5114107 | 5111424 | ID=MS.gene34336.t1;Parent=MS.gene34336 |
| chr6.4 | exon | 5113970 | 5114107 | 5113970 | ID=MS.gene34336.t1.exon1;Parent=MS.gene34336.t1 |
| chr6.4 | CDS | 5113970 | 5114107 | 5113970 | ID=cds.MS.gene34336.t1;Parent=MS.gene34336.t1 |
| chr6.4 | exon | 5112999 | 5113464 | 5112999 | ID=MS.gene34336.t1.exon2;Parent=MS.gene34336.t1 |
| chr6.4 | CDS | 5112999 | 5113464 | 5112999 | ID=cds.MS.gene34336.t1;Parent=MS.gene34336.t1 |
| chr6.4 | exon | 5112205 | 5112968 | 5112205 | ID=MS.gene34336.t1.exon3;Parent=MS.gene34336.t1 |
| chr6.4 | CDS | 5112205 | 5112968 | 5112205 | ID=cds.MS.gene34336.t1;Parent=MS.gene34336.t1 |
| chr6.4 | exon | 5111916 | 5111947 | 5111916 | ID=MS.gene34336.t1.exon4;Parent=MS.gene34336.t1 |
| chr6.4 | CDS | 5111916 | 5111947 | 5111916 | ID=cds.MS.gene34336.t1;Parent=MS.gene34336.t1 |
| chr6.4 | exon | 5111424 | 5111811 | 5111424 | ID=MS.gene34336.t1.exon5;Parent=MS.gene34336.t1 |
| chr6.4 | CDS | 5111424 | 5111811 | 5111424 | ID=cds.MS.gene34336.t1;Parent=MS.gene34336.t1 |
| Gene Sequence |
| Protein sequence |
