Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34773.t1 | XP_013445823.1 | 87.9 | 290 | 28 | 3 | 1 | 287 | 1 | 286 | 1.20E-90 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34773.t1 | P46668 | 79.4 | 63 | 13 | 0 | 90 | 152 | 62 | 124 | 8.4e-21 | 102.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34773.t1 | A0A072TQU2 | 87.9 | 290 | 28 | 3 | 1 | 287 | 1 | 286 | 8.4e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34773.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052698 | MS.gene34773 | 0.8134 | 2.61E-51 | -1.69E-46 |
| MS.gene05456 | MS.gene34773 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene34773 | 0.831381 | 1.72E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34773.t1 | MTR_8g469430 | 88.621 | 290 | 26 | 3 | 1 | 287 | 1 | 286 | 3.14e-173 | 480 |
| MS.gene34773.t1 | MTR_5g038280 | 54.054 | 333 | 98 | 11 | 1 | 287 | 1 | 324 | 7.80e-100 | 295 |
| MS.gene34773.t1 | MTR_4g107650 | 40.483 | 331 | 136 | 9 | 10 | 287 | 15 | 337 | 4.76e-52 | 174 |
| MS.gene34773.t1 | MTR_6g007647 | 56.061 | 132 | 51 | 1 | 88 | 219 | 31 | 155 | 9.47e-41 | 142 |
| MS.gene34773.t1 | MTR_6g007647 | 44.324 | 185 | 91 | 2 | 40 | 219 | 12 | 189 | 1.50e-40 | 142 |
| MS.gene34773.t1 | MTR_8g089895 | 47.826 | 161 | 63 | 4 | 82 | 223 | 45 | 203 | 3.47e-37 | 134 |
| MS.gene34773.t1 | MTR_3g086790 | 57.895 | 114 | 48 | 0 | 86 | 199 | 56 | 169 | 2.08e-36 | 132 |
| MS.gene34773.t1 | MTR_5g039000 | 55.303 | 132 | 55 | 3 | 56 | 185 | 43 | 172 | 2.43e-35 | 129 |
| MS.gene34773.t1 | MTR_8g468210 | 52.239 | 134 | 62 | 1 | 52 | 185 | 41 | 172 | 7.20e-35 | 127 |
| MS.gene34773.t1 | MTR_3g080100 | 55.932 | 118 | 49 | 1 | 90 | 207 | 20 | 134 | 1.32e-34 | 125 |
| MS.gene34773.t1 | MTR_3g080100 | 55.932 | 118 | 49 | 1 | 90 | 207 | 59 | 173 | 2.55e-34 | 125 |
| MS.gene34773.t1 | MTR_6g011610 | 60.714 | 112 | 43 | 1 | 75 | 185 | 80 | 191 | 3.58e-34 | 125 |
| MS.gene34773.t1 | MTR_6g011610 | 60.714 | 112 | 43 | 1 | 75 | 185 | 61 | 172 | 4.70e-34 | 124 |
| MS.gene34773.t1 | MTR_7g010020 | 57.292 | 96 | 41 | 0 | 90 | 185 | 80 | 175 | 9.68e-26 | 103 |
| MS.gene34773.t1 | MTR_8g026960 | 37.640 | 178 | 88 | 6 | 94 | 265 | 38 | 198 | 8.64e-25 | 99.8 |
| MS.gene34773.t1 | MTR_7g103340 | 51.546 | 97 | 40 | 1 | 90 | 186 | 63 | 152 | 1.95e-24 | 98.6 |
| MS.gene34773.t1 | MTR_1g061660 | 51.546 | 97 | 40 | 1 | 90 | 186 | 59 | 148 | 1.93e-23 | 95.9 |
| MS.gene34773.t1 | MTR_3g092150 | 52.747 | 91 | 43 | 0 | 92 | 182 | 40 | 130 | 2.41e-23 | 96.3 |
| MS.gene34773.t1 | MTR_5g019680 | 58.571 | 70 | 29 | 0 | 90 | 159 | 53 | 122 | 4.35e-19 | 83.6 |
| MS.gene34773.t1 | MTR_5g019650 | 58.571 | 70 | 29 | 0 | 90 | 159 | 53 | 122 | 1.46e-18 | 82.8 |
| MS.gene34773.t1 | MTR_4g126900 | 47.253 | 91 | 41 | 1 | 93 | 183 | 91 | 174 | 1.08e-17 | 80.1 |
| MS.gene34773.t1 | MTR_4g100550 | 42.735 | 117 | 58 | 2 | 69 | 183 | 97 | 206 | 2.27e-17 | 80.5 |
| MS.gene34773.t1 | MTR_7g093430 | 39.231 | 130 | 64 | 3 | 54 | 183 | 132 | 246 | 6.43e-17 | 79.3 |
| MS.gene34773.t1 | MTR_1g054285 | 42.241 | 116 | 55 | 2 | 68 | 183 | 137 | 240 | 3.19e-16 | 77.4 |
| MS.gene34773.t1 | MTR_1g017090 | 46.875 | 96 | 44 | 1 | 88 | 183 | 128 | 216 | 5.52e-16 | 76.6 |
| MS.gene34773.t1 | MTR_5g014890 | 45.745 | 94 | 44 | 1 | 90 | 183 | 123 | 209 | 9.75e-16 | 75.9 |
| MS.gene34773.t1 | MTR_5g013010 | 41.880 | 117 | 57 | 2 | 67 | 183 | 117 | 222 | 2.15e-15 | 75.1 |
| MS.gene34773.t1 | MTR_4g084750 | 43.750 | 96 | 47 | 1 | 88 | 183 | 63 | 151 | 2.37e-15 | 73.2 |
| MS.gene34773.t1 | MTR_4g097600 | 43.519 | 108 | 51 | 2 | 76 | 183 | 116 | 213 | 2.52e-15 | 74.7 |
| MS.gene34773.t1 | MTR_2g061030 | 39.474 | 114 | 62 | 1 | 70 | 183 | 180 | 286 | 4.04e-15 | 74.7 |
| MS.gene34773.t1 | MTR_8g006705 | 45.745 | 94 | 44 | 1 | 90 | 183 | 146 | 232 | 1.54e-14 | 72.8 |
| MS.gene34773.t1 | MTR_3g103590 | 50.000 | 72 | 36 | 0 | 90 | 161 | 145 | 216 | 3.24e-13 | 68.9 |
| MS.gene34773.t1 | MTR_2g038625 | 41.489 | 94 | 48 | 1 | 90 | 183 | 82 | 168 | 8.68e-12 | 63.5 |
| MS.gene34773.t1 | MTR_2g038580 | 41.489 | 94 | 48 | 1 | 90 | 183 | 82 | 168 | 8.68e-12 | 63.5 |
| MS.gene34773.t1 | MTR_5g013010 | 50.000 | 66 | 29 | 1 | 77 | 142 | 127 | 188 | 9.47e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34773.t1 | AT3G01470 | 61.682 | 107 | 41 | 0 | 88 | 194 | 66 | 172 | 5.92e-40 | 140 |
| MS.gene34773.t1 | AT4G40060 | 50.340 | 147 | 64 | 3 | 79 | 219 | 45 | 188 | 3.69e-38 | 136 |
| MS.gene34773.t1 | AT2G22430 | 64.948 | 97 | 34 | 0 | 90 | 186 | 62 | 158 | 9.81e-36 | 130 |
| MS.gene34773.t1 | AT1G69780 | 57.265 | 117 | 49 | 1 | 70 | 185 | 64 | 180 | 3.04e-35 | 129 |
| MS.gene34773.t1 | AT5G15150 | 47.712 | 153 | 61 | 2 | 33 | 185 | 77 | 210 | 1.27e-34 | 127 |
| MS.gene34773.t1 | AT5G65310 | 63.918 | 97 | 35 | 0 | 90 | 186 | 54 | 150 | 1.86e-34 | 127 |
| MS.gene34773.t1 | AT5G65310 | 63.918 | 97 | 35 | 0 | 90 | 186 | 72 | 168 | 2.04e-34 | 127 |
| MS.gene34773.t1 | AT1G27045 | 37.811 | 201 | 99 | 3 | 75 | 275 | 10 | 184 | 1.50e-32 | 119 |
| MS.gene34773.t1 | AT1G27045 | 37.811 | 201 | 99 | 3 | 75 | 275 | 10 | 184 | 1.50e-32 | 119 |
| MS.gene34773.t1 | AT1G27045 | 37.811 | 201 | 99 | 3 | 75 | 275 | 2 | 176 | 1.80e-32 | 118 |
| MS.gene34773.t1 | AT1G27045 | 39.583 | 192 | 90 | 3 | 75 | 266 | 53 | 218 | 4.80e-32 | 118 |
| MS.gene34773.t1 | AT3G01220 | 59.375 | 96 | 39 | 0 | 90 | 185 | 87 | 182 | 3.07e-31 | 118 |
| MS.gene34773.t1 | AT1G27045 | 39.303 | 201 | 103 | 5 | 75 | 266 | 53 | 243 | 4.67e-30 | 114 |
| MS.gene34773.t1 | AT1G26960 | 52.174 | 115 | 54 | 1 | 72 | 185 | 52 | 166 | 3.61e-28 | 109 |
| MS.gene34773.t1 | AT2G46680 | 48.182 | 110 | 57 | 0 | 84 | 193 | 26 | 135 | 1.05e-25 | 102 |
| MS.gene34773.t1 | AT2G46680 | 50.515 | 97 | 48 | 0 | 84 | 180 | 26 | 122 | 2.24e-24 | 99.4 |
| MS.gene34773.t1 | AT3G61890 | 50.495 | 101 | 49 | 1 | 93 | 193 | 33 | 132 | 3.34e-24 | 98.2 |
| MS.gene34773.t1 | AT4G36740 | 48.182 | 110 | 50 | 1 | 90 | 199 | 55 | 157 | 5.12e-23 | 94.7 |
| MS.gene34773.t1 | AT4G36740 | 48.182 | 110 | 50 | 1 | 90 | 199 | 56 | 158 | 5.45e-23 | 94.4 |
| MS.gene34773.t1 | AT5G03790 | 41.176 | 136 | 77 | 1 | 90 | 225 | 77 | 209 | 6.22e-23 | 94.7 |
| MS.gene34773.t1 | AT5G03790 | 59.722 | 72 | 29 | 0 | 90 | 161 | 77 | 148 | 6.05e-22 | 91.3 |
| MS.gene34773.t1 | AT2G36610 | 46.667 | 105 | 41 | 2 | 87 | 183 | 68 | 165 | 2.48e-21 | 89.4 |
| MS.gene34773.t1 | AT5G66700 | 58.571 | 70 | 29 | 0 | 90 | 159 | 71 | 140 | 6.66e-21 | 89.4 |
| MS.gene34773.t1 | AT2G18550 | 45.455 | 110 | 53 | 1 | 90 | 199 | 61 | 163 | 6.68e-21 | 89.0 |
| MS.gene34773.t1 | AT5G06710 | 43.750 | 112 | 51 | 2 | 72 | 183 | 177 | 276 | 9.05e-18 | 82.4 |
| MS.gene34773.t1 | AT5G53980 | 41.837 | 98 | 57 | 0 | 90 | 187 | 11 | 108 | 3.93e-17 | 77.0 |
| MS.gene34773.t1 | AT4G37790 | 42.857 | 112 | 52 | 2 | 72 | 183 | 113 | 212 | 4.69e-17 | 79.7 |
| MS.gene34773.t1 | AT5G47370 | 44.681 | 94 | 45 | 1 | 90 | 183 | 130 | 216 | 5.24e-15 | 73.9 |
| MS.gene34773.t1 | AT2G22800 | 45.745 | 94 | 44 | 1 | 90 | 183 | 113 | 199 | 8.51e-15 | 73.2 |
| MS.gene34773.t1 | AT2G01430 | 36.257 | 171 | 89 | 5 | 14 | 183 | 74 | 225 | 9.59e-15 | 73.2 |
| MS.gene34773.t1 | AT2G44910 | 45.745 | 94 | 44 | 1 | 90 | 183 | 163 | 249 | 1.21e-14 | 73.2 |
| MS.gene34773.t1 | AT4G17460 | 40.870 | 115 | 58 | 3 | 76 | 189 | 123 | 228 | 3.02e-14 | 71.6 |
| MS.gene34773.t1 | AT4G16780 | 40.541 | 111 | 52 | 2 | 73 | 183 | 119 | 215 | 3.06e-14 | 71.6 |
| MS.gene34773.t1 | AT3G60390 | 44.681 | 94 | 45 | 1 | 90 | 183 | 162 | 248 | 3.06e-14 | 72.0 |
| MS.gene34773.t1 | AT5G06710 | 49.296 | 71 | 31 | 1 | 72 | 142 | 177 | 242 | 2.37e-13 | 68.9 |
| MS.gene34773.t1 | AT2G01430 | 44.286 | 70 | 39 | 0 | 73 | 142 | 122 | 191 | 1.99e-11 | 62.8 |
| MS.gene34773.t1 | AT1G70920 | 40.594 | 101 | 50 | 2 | 75 | 168 | 27 | 124 | 3.79e-11 | 61.2 |
| MS.gene34773.t1 | AT1G70920 | 42.553 | 94 | 47 | 1 | 90 | 183 | 69 | 155 | 3.85e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCTTGCTCTCCTATTT+TGG | 0.157164 | 8.3:+40892831 | None:intergenic |
| GCAAGTTGAACTTTCCTTCC+AGG | 0.262711 | 8.3:+40892896 | None:intergenic |
| CATCCAACATCTTCAACTTT+AGG | 0.279222 | 8.3:+40891869 | None:intergenic |
| TGGCTATATGGTTCCAAAAT+AGG | 0.286402 | 8.3:-40892844 | MS.gene34773:CDS |
| ATGGAACATTCAAGATGTTT+TGG | 0.287450 | 8.3:+40891897 | None:intergenic |
| GGATTCAGGTTCCAATTCTA+TGG | 0.296135 | 8.3:-40893116 | MS.gene34773:intron |
| CACAACATCAACCATAGAAT+TGG | 0.343400 | 8.3:+40893105 | None:intergenic |
| TTTCAAGAAAATGAACTTGT+TGG | 0.363914 | 8.3:+40892948 | None:intergenic |
| TGTGAAAATTCTGTCTGGTT+TGG | 0.364413 | 8.3:+40891941 | None:intergenic |
| AGCCAAGACAAGTGGCTATA+TGG | 0.377381 | 8.3:-40892856 | MS.gene34773:CDS |
| CATCTTGTGAAAATTCTGTC+TGG | 0.382903 | 8.3:+40891936 | None:intergenic |
| TGAGCTCGTCAACTCTCTCT+TGG | 0.402549 | 8.3:-40893709 | MS.gene34773:CDS |
| ATGGTTGATGTTGTGAATGT+TGG | 0.424290 | 8.3:-40893097 | MS.gene34773:CDS |
| TCTTCAACTTTAGGTATGAA+TGG | 0.429614 | 8.3:+40891878 | None:intergenic |
| TTGGTTCCACATCTGAGGAT+TGG | 0.438878 | 8.3:+40891960 | None:intergenic |
| TATTTCTCTCAAGAAAAGAT+TGG | 0.446084 | 8.3:-40892095 | MS.gene34773:CDS |
| CTGGTTTGGTTCCACATCTG+AGG | 0.458218 | 8.3:+40891955 | None:intergenic |
| GGTTTCCATCAGTGTTCTGT+AGG | 0.464695 | 8.3:+40891981 | None:intergenic |
| AAACAGCTAGAAAAGGACTA+TGG | 0.477186 | 8.3:-40892803 | MS.gene34773:CDS |
| ATACCTAAAGTTGAAGATGT+TGG | 0.484817 | 8.3:-40891872 | MS.gene34773:CDS |
| AATGAATCACCTTGACAAGA+AGG | 0.485040 | 8.3:+40893666 | None:intergenic |
| AACCATATAGCCACTTGTCT+TGG | 0.489367 | 8.3:+40892854 | None:intergenic |
| ATAGAAAACAAGCTTGAACC+TGG | 0.511077 | 8.3:-40892914 | MS.gene34773:CDS |
| CAAAACAAAACAGCTAGAAA+AGG | 0.514734 | 8.3:-40892810 | MS.gene34773:CDS |
| TGCACCAACCAGGTAAGAAA+AGG | 0.516937 | 8.3:-40892982 | MS.gene34773:CDS |
| AGCTCAAAACCTTCTTGTCA+AGG | 0.547348 | 8.3:-40893675 | MS.gene34773:intron |
| GCTGTGAAATGATATCATCA+AGG | 0.557731 | 8.3:+40892032 | None:intergenic |
| AAACAACAAATTAAAAGAAG+AGG | 0.565427 | 8.3:-40892723 | MS.gene34773:intron |
| GTTGTGAATGTTGGTGACAT+GGG | 0.567777 | 8.3:-40893088 | MS.gene34773:CDS |
| CTGTGAAATGATATCATCAA+GGG | 0.573406 | 8.3:+40892033 | None:intergenic |
| CAGCATAAAAGTGATGTGGT+TGG | 0.585373 | 8.3:-40892013 | MS.gene34773:CDS |
| TGTTGTGAATGTTGGTGACA+TGG | 0.586351 | 8.3:-40893089 | MS.gene34773:CDS |
| GAGTGCCTACAGAACACTGA+TGG | 0.587909 | 8.3:-40891986 | MS.gene34773:CDS |
| AAAACAAGCTTGAACCTGGA+AGG | 0.588635 | 8.3:-40892910 | MS.gene34773:CDS |
| TAGCTTGCAGCCAAGACAAG+TGG | 0.597298 | 8.3:-40892864 | MS.gene34773:CDS |
| AAGGAAAGTTCAACTTGCAA+AGG | 0.607696 | 8.3:-40892891 | MS.gene34773:CDS |
| GAGGTGAGCCTGCACCAACC+AGG | 0.609845 | 8.3:-40892992 | MS.gene34773:CDS |
| TTCACAGCATAAAAGTGATG+TGG | 0.612587 | 8.3:-40892017 | MS.gene34773:CDS |
| ACCAACCAGGTAAGAAAAGG+AGG | 0.623127 | 8.3:-40892979 | MS.gene34773:CDS |
| TGGAAACCAATCCTCAGATG+TGG | 0.628207 | 8.3:-40891966 | MS.gene34773:CDS |
| AAGCTACAACAACTTTCATG+TGG | 0.654154 | 8.3:+40891836 | None:intergenic |
| TGATGATGATGAGAACTATG+AGG | 0.658523 | 8.3:-40893011 | MS.gene34773:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTTTGATCTTCAAAA+GGG | + | chr8.3:40893766-40893785 | None:intergenic | 20.0% |
| !! | AAACAACAAATTAAAAGAAG+AGG | - | chr8.3:40892847-40892866 | MS.gene34773:CDS | 20.0% |
| !! | TATTGTGATTCTTTAATTGA+CGG | + | chr8.3:40892218-40892237 | None:intergenic | 20.0% |
| !!! | AACATCATCTTTTAAAACAA+AGG | + | chr8.3:40892360-40892379 | None:intergenic | 20.0% |
| !!! | AAGTTACATTTTTTTAAGCT+TGG | - | chr8.3:40892433-40892452 | MS.gene34773:intron | 20.0% |
| !!! | ATATAATTTTATCCCACTAA+TGG | - | chr8.3:40893416-40893435 | MS.gene34773:intron | 20.0% |
| !!! | ATTCAATCTTGATTTTTCAT+CGG | + | chr8.3:40892385-40892404 | None:intergenic | 20.0% |
| !!! | CAAGCTTAATCTATTTTTAT+CGG | - | chr8.3:40893188-40893207 | MS.gene34773:intron | 20.0% |
| !!! | TATTTTCCTCTTTTTTTCTT+GGG | + | chr8.3:40893502-40893521 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTTTTTTTCT+TGG | + | chr8.3:40893503-40893522 | None:intergenic | 20.0% |
| ! | AATTAATCACTTACCATTAG+TGG | + | chr8.3:40893432-40893451 | None:intergenic | 25.0% |
| ! | ATTAATCACTTACCATTAGT+GGG | + | chr8.3:40893431-40893450 | None:intergenic | 25.0% |
| ! | CAAAAAGTTTGATCTTCAAA+AGG | + | chr8.3:40893767-40893786 | None:intergenic | 25.0% |
| ! | GAAATAACCTGTAATAAGAA+AGG | + | chr8.3:40893461-40893480 | None:intergenic | 25.0% |
| ! | TATTTCTCTCAAGAAAAGAT+TGG | - | chr8.3:40893475-40893494 | MS.gene34773:intron | 25.0% |
| ! | TGTTTCCATTATAAATTTCC+CGG | - | chr8.3:40892299-40892318 | MS.gene34773:intron | 25.0% |
| ! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8.3:40892625-40892644 | None:intergenic | 25.0% |
| !! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8.3:40892624-40892643 | MS.gene34773:intron | 25.0% |
| !! | AAGATCAAACTTTTTGCTTT+TGG | - | chr8.3:40893771-40893790 | MS.gene34773:CDS | 25.0% |
| !! | AGCTTTTGTCAAAATTAAAG+TGG | - | chr8.3:40892168-40892187 | MS.gene34773:intron | 25.0% |
| !! | TGTTAATGTTGATAAGTTCT+TGG | + | chr8.3:40893331-40893350 | None:intergenic | 25.0% |
| !! | TTGACAAAAGCTACATTTTA+GGG | + | chr8.3:40892160-40892179 | None:intergenic | 25.0% |
| !! | TTTGACAAAAGCTACATTTT+AGG | + | chr8.3:40892161-40892180 | None:intergenic | 25.0% |
| !!! | ATCTATTTTTATCGGTCATT+TGG | - | chr8.3:40893196-40893215 | MS.gene34773:intron | 25.0% |
| !!! | ATTTTTTTAAGCTTGGATTC+AGG | - | chr8.3:40892440-40892459 | MS.gene34773:intron | 25.0% |
| AAACAGAAGTTGGATTCTTA+TGG | - | chr8.3:40892043-40892062 | MS.gene34773:CDS | 30.0% | |
| AGTGCTATATATATGCTTGA+TGG | + | chr8.3:40892923-40892942 | None:intergenic | 30.0% | |
| ATACCTAAAGTTGAAGATGT+TGG | - | chr8.3:40893698-40893717 | MS.gene34773:CDS | 30.0% | |
| CAAAACAAAACAGCTAGAAA+AGG | - | chr8.3:40892760-40892779 | MS.gene34773:CDS | 30.0% | |
| CTGTGAAATGATATCATCAA+GGG | + | chr8.3:40893540-40893559 | None:intergenic | 30.0% | |
| TCTTCAACTTTAGGTATGAA+TGG | + | chr8.3:40893695-40893714 | None:intergenic | 30.0% | |
| TTTGCTACCTTTCTTATTAC+AGG | - | chr8.3:40893451-40893470 | MS.gene34773:intron | 30.0% | |
| ! | ACAGATTTTACATTTTGCAC+AGG | + | chr8.3:40893295-40893314 | None:intergenic | 30.0% |
| ! | ATGGAACATTCAAGATGTTT+TGG | + | chr8.3:40893676-40893695 | None:intergenic | 30.0% |
| ! | CAGATTTTACATTTTGCACA+GGG | + | chr8.3:40893294-40893313 | None:intergenic | 30.0% |
| ! | TGCAGATGAAGTTTTCTTTT+TGG | - | chr8.3:40892016-40892035 | MS.gene34773:CDS | 30.0% |
| ! | TTAGTGCATGTTTGAAATCA+GGG | - | chr8.3:40892113-40892132 | MS.gene34773:intron | 30.0% |
| AAAATGTAGCCGATATGGTT+CGG | - | chr8.3:40892255-40892274 | MS.gene34773:intron | 35.0% | |
| AAACAGCTAGAAAAGGACTA+TGG | - | chr8.3:40892767-40892786 | MS.gene34773:CDS | 35.0% | |
| AAATGTCCTTAATCGCGAAT+TGG | + | chr8.3:40892326-40892345 | None:intergenic | 35.0% | |
| AAGCTACAACAACTTTCATG+TGG | + | chr8.3:40893737-40893756 | None:intergenic | 35.0% | |
| AAGGAAAGTTCAACTTGCAA+AGG | - | chr8.3:40892679-40892698 | MS.gene34773:intron | 35.0% | |
| AATGAATCACCTTGACAAGA+AGG | + | chr8.3:40891907-40891926 | None:intergenic | 35.0% | |
| AATGTCCTTAATCGCGAATT+GGG | + | chr8.3:40892325-40892344 | None:intergenic | 35.0% | |
| ATAGAAAACAAGCTTGAACC+TGG | - | chr8.3:40892656-40892675 | MS.gene34773:intron | 35.0% | |
| ATTGGTCCCAAGAAAAAAAG+AGG | - | chr8.3:40893493-40893512 | MS.gene34773:intron | 35.0% | |
| CAACAATCAAGAAGCTACAA+AGG | + | chr8.3:40891931-40891950 | None:intergenic | 35.0% | |
| CACAACATCAACCATAGAAT+TGG | + | chr8.3:40892468-40892487 | None:intergenic | 35.0% | |
| CATCCAACATCTTCAACTTT+AGG | + | chr8.3:40893704-40893723 | None:intergenic | 35.0% | |
| CATCTTGTGAAAATTCTGTC+TGG | + | chr8.3:40893637-40893656 | None:intergenic | 35.0% | |
| GCTGTGAAATGATATCATCA+AGG | + | chr8.3:40893541-40893560 | None:intergenic | 35.0% | |
| GTAGTAAAATGTAGCCGATA+TGG | - | chr8.3:40892250-40892269 | MS.gene34773:intron | 35.0% | |
| TGGCTATATGGTTCCAAAAT+AGG | - | chr8.3:40892726-40892745 | MS.gene34773:CDS | 35.0% | |
| TGTGAAAATTCTGTCTGGTT+TGG | + | chr8.3:40893632-40893651 | None:intergenic | 35.0% | |
| TTCACAGCATAAAAGTGATG+TGG | - | chr8.3:40893553-40893572 | MS.gene34773:intron | 35.0% | |
| ! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8.3:40892473-40892492 | MS.gene34773:intron | 35.0% |
| ! | CTTAGTGCATGTTTGAAATC+AGG | - | chr8.3:40892112-40892131 | MS.gene34773:intron | 35.0% |
| ! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8.3:40892742-40892761 | None:intergenic | 35.0% |
| ! | TGATGATGATGAGAACTATG+AGG | - | chr8.3:40892559-40892578 | MS.gene34773:intron | 35.0% |
| ! | TTTTGGTCGAAAACAGAAGT+TGG | - | chr8.3:40892033-40892052 | MS.gene34773:CDS | 35.0% |
| !!! | CATTCAAGATGTTTTGGCTT+AGG | + | chr8.3:40893670-40893689 | None:intergenic | 35.0% |
| AAAACAAGCTTGAACCTGGA+AGG | - | chr8.3:40892660-40892679 | MS.gene34773:intron | 40.0% | |
| AACCATATAGCCACTTGTCT+TGG | + | chr8.3:40892719-40892738 | None:intergenic | 40.0% | |
| AATCGTTGACCGAACCATAT+CGG | + | chr8.3:40892267-40892286 | None:intergenic | 40.0% | |
| AGCTCAAAACCTTCTTGTCA+AGG | - | chr8.3:40891895-40891914 | MS.gene34773:CDS | 40.0% | |
| CAGCATAAAAGTGATGTGGT+TGG | - | chr8.3:40893557-40893576 | MS.gene34773:intron | 40.0% | |
| TTGGGCCGGGAAATTTATAA+TGG | + | chr8.3:40892307-40892326 | None:intergenic | 40.0% | |
| ! | GGATTCAGGTTCCAATTCTA+TGG | - | chr8.3:40892454-40892473 | MS.gene34773:intron | 40.0% |
| !! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8.3:40892482-40892501 | MS.gene34773:intron | 40.0% |
| !! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8.3:40892481-40892500 | MS.gene34773:intron | 40.0% |
| ACCAACCAGGTAAGAAAAGG+AGG | - | chr8.3:40892591-40892610 | MS.gene34773:intron | 45.0% | |
| AGCCAAGACAAGTGGCTATA+TGG | - | chr8.3:40892714-40892733 | MS.gene34773:intron | 45.0% | |
| GGTTTCCATCAGTGTTCTGT+AGG | + | chr8.3:40893592-40893611 | None:intergenic | 45.0% | |
| TGCACCAACCAGGTAAGAAA+AGG | - | chr8.3:40892588-40892607 | MS.gene34773:intron | 45.0% | |
| TGGAAACCAATCCTCAGATG+TGG | - | chr8.3:40893604-40893623 | MS.gene34773:intron | 45.0% | |
| TTGGTTCCACATCTGAGGAT+TGG | + | chr8.3:40893613-40893632 | None:intergenic | 45.0% | |
| ! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8.3:40892677-40892696 | None:intergenic | 45.0% |
| ! | GTGCATGTTTGAAATCAGGG+TGG | - | chr8.3:40892116-40892135 | MS.gene34773:intron | 45.0% |
| !! | TTTTCTTACCTGGTTGGTGC+AGG | + | chr8.3:40892589-40892608 | None:intergenic | 45.0% |
| ACGAGCACCAGACATGACAT+TGG | + | chr8.3:40893042-40893061 | None:intergenic | 50.0% | |
| GAGTGCCTACAGAACACTGA+TGG | - | chr8.3:40893584-40893603 | MS.gene34773:intron | 50.0% | |
| GTCAGTGCCAATGTCATGTC+TGG | - | chr8.3:40893032-40893051 | MS.gene34773:CDS | 50.0% | |
| TCCTTAATCGCGAATTGGGC+CGG | + | chr8.3:40892321-40892340 | None:intergenic | 50.0% | |
| TGAGCTCGTCAACTCTCTCT+TGG | - | chr8.3:40891861-40891880 | MS.gene34773:CDS | 50.0% | |
| ! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8.3:40892595-40892614 | None:intergenic | 50.0% |
| ! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8.3:40892599-40892618 | None:intergenic | 50.0% |
| ! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8.3:40892706-40892725 | MS.gene34773:intron | 50.0% |
| !! | CTGGTTTGGTTCCACATCTG+AGG | + | chr8.3:40893618-40893637 | None:intergenic | 50.0% |
| CCTTAATCGCGAATTGGGCC+GGG | + | chr8.3:40892320-40892339 | None:intergenic | 55.0% | |
| CCCGGCCCAATTCGCGATTA+AGG | - | chr8.3:40892317-40892336 | MS.gene34773:intron | 60.0% | |
| GAGGTGAGCCTGCACCAACC+AGG | - | chr8.3:40892578-40892597 | MS.gene34773:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 40891790 | 40893802 | 40891790 | ID=MS.gene34773 |
| chr8.3 | mRNA | 40891790 | 40893802 | 40891790 | ID=MS.gene34773.t1;Parent=MS.gene34773 |
| chr8.3 | exon | 40893676 | 40893802 | 40893676 | ID=MS.gene34773.t1.exon1;Parent=MS.gene34773.t1 |
| chr8.3 | CDS | 40893676 | 40893802 | 40893676 | ID=cds.MS.gene34773.t1;Parent=MS.gene34773.t1 |
| chr8.3 | exon | 40892724 | 40893130 | 40892724 | ID=MS.gene34773.t1.exon2;Parent=MS.gene34773.t1 |
| chr8.3 | CDS | 40892724 | 40893130 | 40892724 | ID=cds.MS.gene34773.t1;Parent=MS.gene34773.t1 |
| chr8.3 | exon | 40891790 | 40892119 | 40891790 | ID=MS.gene34773.t1.exon3;Parent=MS.gene34773.t1 |
| chr8.3 | CDS | 40891790 | 40892119 | 40891790 | ID=cds.MS.gene34773.t1;Parent=MS.gene34773.t1 |
| Gene Sequence |
| Protein sequence |
