Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34983.t1 | RHN42304.1 | 96.8 | 1141 | 31 | 2 | 1 | 1139 | 18 | 1154 | 0.00E+00 | 2130.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34983.t1 | Q9LKW9 | 63.4 | 1119 | 390 | 13 | 31 | 1138 | 33 | 1142 | 0.0e+00 | 1328.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34983.t1 | A0A396GS19 | 96.8 | 1141 | 31 | 2 | 1 | 1139 | 18 | 1154 | 0.0e+00 | 2130.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene34983 | 0.805505 | 1.29E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene34983 | 0.806908 | 6.55E-50 | -1.69E-46 |
| MS.gene050257 | MS.gene34983 | 0.870379 | 1.53E-66 | -1.69E-46 |
| MS.gene050258 | MS.gene34983 | 0.884782 | 1.43E-71 | -1.69E-46 |
| MS.gene050348 | MS.gene34983 | 0.829744 | 4.34E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene34983 | 0.829127 | 6.12E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene34983 | 0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene34983 | 0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene053945 | MS.gene34983 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene34983 | 0.804153 | 2.48E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene34983 | 0.804675 | 1.93E-49 | -1.69E-46 |
| MS.gene057329 | MS.gene34983 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene058649 | MS.gene34983 | 0.826352 | 2.84E-54 | -1.69E-46 |
| MS.gene059634 | MS.gene34983 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene34983 | 0.810438 | 1.15E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34983.t1 | MTR_2g038400 | 70.707 | 99 | 19 | 1 | 112 | 200 | 8 | 106 | 1.21e-31 | 120 |
| MS.gene34983.t1 | MTR_2g028230 | 24.494 | 445 | 279 | 12 | 25 | 442 | 3 | 417 | 9.64e-19 | 91.7 |
| MS.gene34983.t1 | MTR_3g055600 | 25.323 | 387 | 237 | 13 | 95 | 450 | 86 | 451 | 6.26e-14 | 76.6 |
| MS.gene34983.t1 | MTR_1g082440 | 26.444 | 329 | 214 | 9 | 95 | 403 | 81 | 401 | 1.95e-13 | 74.7 |
| MS.gene34983.t1 | MTR_1g082450 | 24.161 | 447 | 290 | 15 | 24 | 444 | 16 | 439 | 7.24e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34983.t1 | AT2G01980 | 63.360 | 1119 | 390 | 13 | 31 | 1138 | 33 | 1142 | 0.0 | 1379 |
| MS.gene34983.t1 | AT1G14660 | 67.397 | 730 | 233 | 3 | 13 | 739 | 13 | 740 | 0.0 | 993 |
| MS.gene34983.t1 | AT1G14660 | 63.699 | 730 | 237 | 5 | 13 | 739 | 13 | 717 | 0.0 | 919 |
| MS.gene34983.t1 | AT1G79610 | 24.612 | 451 | 301 | 12 | 10 | 442 | 3 | 432 | 3.26e-26 | 115 |
| MS.gene34983.t1 | AT1G54370 | 26.562 | 384 | 247 | 12 | 40 | 404 | 32 | 399 | 6.73e-20 | 95.5 |
| MS.gene34983.t1 | AT5G55470 | 24.267 | 375 | 257 | 10 | 95 | 450 | 78 | 444 | 5.81e-14 | 76.6 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCTTTCTAAGATATTT+TGG | 0.131042 | 4.4:-18118728 | MS.gene34983:CDS |
| CCGTTAATTTCTCAAATATC+TGG | 0.182812 | 4.4:+18112787 | None:intergenic |
| CAAGAGAGTGCGGATGTTTC+TGG | 0.218016 | 4.4:-18120469 | MS.gene34983:CDS |
| TGCGTAAAAGTTGGATAAAA+TGG | 0.220967 | 4.4:+18113197 | None:intergenic |
| CTCATCCTTGGCATTGCTCT+TGG | 0.232996 | 4.4:-18127203 | MS.gene34983:CDS |
| AATGGAAGTTCACCAAATTA+AGG | 0.242574 | 4.4:-18122505 | MS.gene34983:intron |
| TCTTATTTGCTTCGACAAAA+AGG | 0.244610 | 4.4:+18113093 | None:intergenic |
| GCAATGCAGCTGAGCATATA+TGG | 0.245091 | 4.4:-18111535 | MS.gene34983:CDS |
| GGGCCAAATCAAATGGTATT+TGG | 0.247097 | 4.4:-18113356 | MS.gene34983:CDS |
| GACATATCCTTCTAGTAAAA+AGG | 0.248756 | 4.4:+18112674 | None:intergenic |
| GGTATTTGGTTAATTTCTAA+TGG | 0.259059 | 4.4:-18113342 | MS.gene34983:CDS |
| TCAGATGCAGTTATCTTCTT+TGG | 0.260845 | 4.4:-18127299 | MS.gene34983:CDS |
| TGTTTCCCCTCTTATATATA+TGG | 0.263470 | 4.4:+18112722 | None:intergenic |
| CTATTCTATCGGATGGTTCT+TGG | 0.275444 | 4.4:-18120983 | MS.gene34983:CDS |
| TCATCAAGGGTCTTGTTATC+TGG | 0.277394 | 4.4:-18111779 | MS.gene34983:CDS |
| CCTTGAGAATGCTGGGATAT+TGG | 0.280460 | 4.4:-18113689 | MS.gene34983:CDS |
| TACCTGACATTGACAAATTT+AGG | 0.281458 | 4.4:+18112580 | None:intergenic |
| ATGTTAAATTAACATCTTCT+AGG | 0.288334 | 4.4:+18113975 | None:intergenic |
| CAAAGACTCCCCTTCAATTA+TGG | 0.288506 | 4.4:+18121255 | None:intergenic |
| TAACCAAATACCATTTGATT+TGG | 0.295146 | 4.4:+18113353 | None:intergenic |
| AGCAAAGCTTACATCACTTT+TGG | 0.306140 | 4.4:-18120305 | MS.gene34983:intron |
| TAGGTGTCCAAGCTGCTTAC+TGG | 0.315571 | 4.4:-18114614 | MS.gene34983:CDS |
| TGCCCTTGCAGACAAACTAT+TGG | 0.319388 | 4.4:+18111555 | None:intergenic |
| TTGTGCTAGAAACTTGATTA+TGG | 0.324653 | 4.4:+18120940 | None:intergenic |
| AACAAAGCATTAGAGGCTTT+TGG | 0.326153 | 4.4:-18116196 | MS.gene34983:CDS |
| ATTCTTCCACTGATAGCATT+AGG | 0.326908 | 4.4:+18114547 | None:intergenic |
| ACGTGGCTTGACACTTTATA+AGG | 0.334941 | 4.4:-18113382 | MS.gene34983:CDS |
| TTTGGTCTCAGTCTTGCTCT+TGG | 0.339821 | 4.4:-18127281 | MS.gene34983:CDS |
| TTCACTGTGGGCCAGTCAGC+AGG | 0.341866 | 4.4:+18116145 | None:intergenic |
| GTATTTGGTTAATTTCTAAT+GGG | 0.342597 | 4.4:-18113341 | MS.gene34983:CDS |
| GTAGGAATTGGCCTTGCGTT+CGG | 0.344237 | 4.4:-18120829 | MS.gene34983:CDS |
| CGTATGTCTTTCAAATTCAT+AGG | 0.344417 | 4.4:+18116040 | None:intergenic |
| CCAGATATTTGAGAAATTAA+CGG | 0.345061 | 4.4:-18112787 | MS.gene34983:CDS |
| AATGCTCAACAAAGCATTAG+AGG | 0.353136 | 4.4:-18116203 | MS.gene34983:CDS |
| GGCATTGCTCTTGGATCCTT+AGG | 0.353533 | 4.4:-18127194 | MS.gene34983:intron |
| TAGGAATTGGCCTTGCGTTC+GGG | 0.362803 | 4.4:-18120828 | MS.gene34983:CDS |
| TCACCTCTTCCCCTCAAGAC+TGG | 0.370990 | 4.4:+18111009 | None:intergenic |
| GGAAAACGTCGCTGTTGCTT+GGG | 0.371969 | 4.4:-18121354 | MS.gene34983:CDS |
| AGTGGAAGAATCAATAGATT+TGG | 0.376295 | 4.4:-18114535 | MS.gene34983:CDS |
| CATCATCGGCTGGGAAAGAT+TGG | 0.376365 | 4.4:-18122795 | MS.gene34983:CDS |
| AATACCATTGTTCCAGTCTC+TGG | 0.378166 | 4.4:+18117608 | None:intergenic |
| CAACAATTACATGATTTCAT+AGG | 0.380350 | 4.4:-18114330 | MS.gene34983:intron |
| AGGAACTCGGGCCTGCTGAC+TGG | 0.382866 | 4.4:-18116156 | MS.gene34983:CDS |
| TTCCTAAATTTGTCAATGTC+AGG | 0.384859 | 4.4:-18112582 | MS.gene34983:intron |
| GTCACTTTCACTATCGGTTA+AGG | 0.386511 | 4.4:-18118639 | MS.gene34983:intron |
| CAAGAACCATCCGATAGAAT+AGG | 0.386858 | 4.4:+18120984 | None:intergenic |
| GATTGCTCCAGTGTAGGAAT+TGG | 0.390911 | 4.4:-18120841 | MS.gene34983:intron |
| ATGAGCAAAGCGACAGTGTA+AGG | 0.392815 | 4.4:+18127221 | None:intergenic |
| TATCTGGGGAAGTAATAGTT+TGG | 0.406891 | 4.4:+18112803 | None:intergenic |
| TGGAAAACGTCGCTGTTGCT+TGG | 0.406997 | 4.4:-18121355 | MS.gene34983:CDS |
| TTCTGCCTGTAGAAATGTTC+AGG | 0.410277 | 4.4:+18111607 | None:intergenic |
| CGTTAATTTCTCAAATATCT+GGG | 0.421200 | 4.4:+18112788 | None:intergenic |
| TTTACGCATGGGAGCACATT+GGG | 0.423269 | 4.4:-18113182 | MS.gene34983:CDS |
| GCTATTATTCTCGTCTGGTC+CGG | 0.434655 | 4.4:-18118683 | MS.gene34983:CDS |
| ATTTGCAAGGACAGCTTTCA+AGG | 0.435228 | 4.4:-18120337 | MS.gene34983:CDS |
| AACAAGGCTACAACTGCAAC+AGG | 0.435383 | 4.4:+18121310 | None:intergenic |
| GTGACAACATTACAGATATA+TGG | 0.435784 | 4.4:+18113134 | None:intergenic |
| AAAACAGCCAGCAGGAGCTC+TGG | 0.435837 | 4.4:+18122561 | None:intergenic |
| ATCATCGGCTGGGAAAGATT+GGG | 0.436905 | 4.4:-18122794 | MS.gene34983:CDS |
| GAAATGACCATATATATAAG+AGG | 0.437424 | 4.4:-18112729 | MS.gene34983:CDS |
| GTTCAAAACCTTGAGAATGC+TGG | 0.441642 | 4.4:-18113697 | MS.gene34983:CDS |
| CACAAGAAGTCTTCCATTGA+AGG | 0.441739 | 4.4:+18113047 | None:intergenic |
| CTTTGACGTGGTTCAAAGGT+TGG | 0.443015 | 4.4:+18111235 | None:intergenic |
| AAGAACCATCCGATAGAATA+GGG | 0.444727 | 4.4:+18120985 | None:intergenic |
| TTCTTGGAGAGACCTTCAAC+TGG | 0.449538 | 4.4:-18120967 | MS.gene34983:CDS |
| TCTTGTTTAAATGACATTGA+AGG | 0.449962 | 4.4:-18116112 | MS.gene34983:CDS |
| CTTCGATCTGTGCTTTGTGA+AGG | 0.450365 | 4.4:+18111121 | None:intergenic |
| CTGAAGCTGAAGCTGAAAGC+AGG | 0.455045 | 4.4:+18127363 | None:intergenic |
| GGCAACTGCTCCACGCAATC+CGG | 0.460952 | 4.4:+18118664 | None:intergenic |
| TCTCAAATCCGACCCTTCAA+TGG | 0.461744 | 4.4:-18113060 | MS.gene34983:CDS |
| TTTGTTGTGTAGGAAAATCA+TGG | 0.462139 | 4.4:-18118814 | MS.gene34983:intron |
| TGGAGGAACTTGTAGTAACT+TGG | 0.462214 | 4.4:+18114459 | None:intergenic |
| TAAACCTTTCCAGTCACATA+GGG | 0.464931 | 4.4:+18114500 | None:intergenic |
| CAGTTCATATTACACTTCCT+TGG | 0.465881 | 4.4:-18117453 | MS.gene34983:CDS |
| ACCTCAAGGTCATCAAGAAC+TGG | 0.466080 | 4.4:-18112649 | MS.gene34983:CDS |
| TTCCCAGTCTTGAGGGGAAG+AGG | 0.466992 | 4.4:-18111012 | MS.gene34983:CDS |
| GTTGGATATGACAAACTTTG+AGG | 0.468284 | 4.4:+18111253 | None:intergenic |
| TTTCGAGAGCTCATTCTCAA+TGG | 0.469315 | 4.4:-18122523 | MS.gene34983:CDS |
| GCGTAAAAGTTGGATAAAAT+GGG | 0.469459 | 4.4:+18113198 | None:intergenic |
| TGCCTTGTCACTTTCACTAT+CGG | 0.470497 | 4.4:-18118645 | MS.gene34983:CDS |
| GGTAACCGCACCAGCAGCTC+TGG | 0.473166 | 4.4:-18112628 | MS.gene34983:CDS |
| ACTGTCGCTTTGCTCATCCT+TGG | 0.476445 | 4.4:-18127215 | MS.gene34983:CDS |
| CAATGCAGCTGAGCATATAT+GGG | 0.477903 | 4.4:-18111534 | MS.gene34983:CDS |
| ATTGAATTGACTCCAGAGAC+TGG | 0.478667 | 4.4:-18117620 | MS.gene34983:CDS |
| TGAAGCTGAAAGCAGGGAAA+AGG | 0.481172 | 4.4:+18127370 | None:intergenic |
| GATTATGGTAGCCCAGTTGA+AGG | 0.483438 | 4.4:+18120955 | None:intergenic |
| TTCAAAACCTTGAGAATGCT+GGG | 0.486859 | 4.4:-18113696 | MS.gene34983:CDS |
| CACCTCTTCCCCTCAAGACT+GGG | 0.487508 | 4.4:+18111010 | None:intergenic |
| AAGAAGCTATTATTCTCGTC+TGG | 0.489581 | 4.4:-18118688 | MS.gene34983:CDS |
| CATCGGAGCCCCTATGTGAC+TGG | 0.491734 | 4.4:-18114509 | MS.gene34983:CDS |
| GTTATAGCTGAAGGAATACT+TGG | 0.492084 | 4.4:-18119343 | MS.gene34983:CDS |
| TTAGGAAGCTTAACCATAGG+AGG | 0.492485 | 4.4:+18113492 | None:intergenic |
| ATCAATAGATTTGGCCTCAT+CGG | 0.492591 | 4.4:-18114526 | MS.gene34983:CDS |
| GGACTCTAGTCCCACGCAAA+AGG | 0.493391 | 4.4:+18127243 | None:intergenic |
| GATTCATTCTCTGAAGAAGA+AGG | 0.493694 | 4.4:+18127329 | None:intergenic |
| ACATCTTCATGATGCTGTCC+AGG | 0.493830 | 4.4:-18113650 | MS.gene34983:intron |
| AAAAGGCAACTGAATGATAA+GGG | 0.497714 | 4.4:+18112691 | None:intergenic |
| TTATACCCTATTCTATCGGA+TGG | 0.498354 | 4.4:-18120990 | MS.gene34983:CDS |
| TATCCAAAATATCTTAGAAA+GGG | 0.504139 | 4.4:+18118725 | None:intergenic |
| GGCTTGACACTTTATAAGGA+AGG | 0.504240 | 4.4:-18113378 | MS.gene34983:CDS |
| AGGTGTCCAAGCTGCTTACT+GGG | 0.506147 | 4.4:-18114613 | MS.gene34983:CDS |
| ATATCCAAAATATCTTAGAA+AGG | 0.507755 | 4.4:+18118724 | None:intergenic |
| AAGGAAGGGGCCAAATCAAA+TGG | 0.508064 | 4.4:-18113363 | MS.gene34983:CDS |
| ATATGGTACTCATCATCGGC+TGG | 0.508250 | 4.4:-18122805 | MS.gene34983:CDS |
| TGTCTAGATGCATTGTTGTT+GGG | 0.508423 | 4.4:-18118757 | MS.gene34983:CDS |
| TTTCATACTTTGTAAACTCA+AGG | 0.508771 | 4.4:+18116224 | None:intergenic |
| GAAAACGTCGCTGTTGCTTG+GGG | 0.509537 | 4.4:-18121353 | MS.gene34983:CDS |
| GCTCTGCCGTCTTCAGTTCG+TGG | 0.511630 | 4.4:-18113441 | MS.gene34983:CDS |
| AATTTCTAATGGGGTGGTGA+AGG | 0.512481 | 4.4:-18113331 | MS.gene34983:intron |
| CTTGGAGATGATGAGGAACT+CGG | 0.514506 | 4.4:-18116169 | MS.gene34983:CDS |
| GTGTCTAGATGCATTGTTGT+TGG | 0.514928 | 4.4:-18118758 | MS.gene34983:CDS |
| GCAGCTCTGGTTCCTTCACA+TGG | 0.515262 | 4.4:-18112615 | MS.gene34983:CDS |
| GGGAGTCTTTGATGAATGAT+GGG | 0.518002 | 4.4:-18121243 | MS.gene34983:intron |
| GGGGAGTCTTTGATGAATGA+TGG | 0.519175 | 4.4:-18121244 | MS.gene34983:CDS |
| AAGTTAAGCACCATAATTGA+AGG | 0.519301 | 4.4:-18121265 | MS.gene34983:CDS |
| AGCATAGTGCTCTTATGAGT+TGG | 0.519368 | 4.4:-18111630 | MS.gene34983:CDS |
| ATTACTTAGAAACCCTCCTA+TGG | 0.521653 | 4.4:-18113505 | MS.gene34983:CDS |
| GTGCTCCCATGCGTAAAAGT+TGG | 0.522400 | 4.4:+18113188 | None:intergenic |
| GAAATATATCTCTTCACTGT+GGG | 0.522957 | 4.4:+18116133 | None:intergenic |
| TACTGGGAGATGCTTGATGA+AGG | 0.523358 | 4.4:-18114597 | MS.gene34983:CDS |
| AATGGAAGACTTCTTGTGGC+AGG | 0.523572 | 4.4:-18113042 | MS.gene34983:intron |
| TTCGATCTGTGCTTTGTGAA+GGG | 0.525010 | 4.4:+18111122 | None:intergenic |
| CTAAACCTTTCCAGTCACAT+AGG | 0.527288 | 4.4:+18114499 | None:intergenic |
| GAGCTCTCGAAAAGGAGAGC+AGG | 0.527488 | 4.4:+18122534 | None:intergenic |
| TTGAGAATGAGCTCTCGAAA+AGG | 0.527824 | 4.4:+18122526 | None:intergenic |
| TTGGTTAATTTCTAATGGGG+TGG | 0.532424 | 4.4:-18113337 | MS.gene34983:CDS |
| TCCTTTGTACCGCTTACAAG+TGG | 0.534784 | 4.4:+18113417 | None:intergenic |
| ATGGTTGAAATTACAACACC+TGG | 0.535919 | 4.4:+18121501 | None:intergenic |
| GATTGATCCAGAGCTCCTGC+TGG | 0.537349 | 4.4:-18122568 | MS.gene34983:CDS |
| TGTTAATTTAACATACCCTC+AGG | 0.537586 | 4.4:-18113966 | MS.gene34983:intron |
| TATTTGGTTAATTTCTAATG+GGG | 0.539043 | 4.4:-18113340 | MS.gene34983:CDS |
| ACCAGTTCTTGATGACCTTG+AGG | 0.539488 | 4.4:+18112648 | None:intergenic |
| TTTCTAGCACAAGTTTCACT+TGG | 0.539570 | 4.4:-18120929 | MS.gene34983:CDS |
| ACGACTTTGACGTGGTTCAA+AGG | 0.541912 | 4.4:+18111231 | None:intergenic |
| CCAATATCCCAGCATTCTCA+AGG | 0.543142 | 4.4:+18113689 | None:intergenic |
| TTGTTGTGTAGGAAAATCAT+GGG | 0.545555 | 4.4:-18118813 | MS.gene34983:intron |
| TGGTTTATACCCTATTCTAT+CGG | 0.546971 | 4.4:-18120994 | MS.gene34983:CDS |
| AATCCAATAGTTTGTCTGCA+AGG | 0.547564 | 4.4:-18111558 | MS.gene34983:CDS |
| GCTTGACACTTTATAAGGAA+GGG | 0.547709 | 4.4:-18113377 | MS.gene34983:CDS |
| AAATGACCATATATATAAGA+GGG | 0.548802 | 4.4:-18112728 | MS.gene34983:CDS |
| CCACGTCAAAGTCGTCCACT+TGG | 0.549984 | 4.4:-18111223 | MS.gene34983:CDS |
| TCAAGAGAATACTACCATGA+TGG | 0.551115 | 4.4:+18119305 | None:intergenic |
| ATCCAATAGTTTGTCTGCAA+GGG | 0.551501 | 4.4:-18111557 | MS.gene34983:CDS |
| GTTGGCCTGAACATTTCTAC+AGG | 0.551991 | 4.4:-18111612 | MS.gene34983:CDS |
| AAGAAGATAACTGCATCTGA+TGG | 0.552503 | 4.4:+18127302 | None:intergenic |
| AGTGGAGTTGTTATAGCTGA+AGG | 0.555246 | 4.4:-18119352 | MS.gene34983:CDS |
| GGTTCTATTCCGCATTTGCA+AGG | 0.560213 | 4.4:-18120350 | MS.gene34983:CDS |
| CTTGACACTTTATAAGGAAG+GGG | 0.561781 | 4.4:-18113376 | MS.gene34983:CDS |
| GACTCCAGAGACTGGAACAA+TGG | 0.562141 | 4.4:-18117612 | MS.gene34983:intron |
| GAAGTCTTCCATTGAAGGGT+CGG | 0.562961 | 4.4:+18113052 | None:intergenic |
| CGGCTGGGAAAGATTGGGGA+TGG | 0.563072 | 4.4:-18122789 | MS.gene34983:CDS |
| CAGAATATGGTACTCATCAT+CGG | 0.564072 | 4.4:-18122809 | MS.gene34983:CDS |
| CTCGTCTGGTCCGGATTGCG+TGG | 0.564346 | 4.4:-18118674 | MS.gene34983:CDS |
| AAGTAATATACATCCTATGT+TGG | 0.565785 | 4.4:-18113466 | MS.gene34983:CDS |
| TAAGAGCACTATGCTGTCTA+CGG | 0.567627 | 4.4:+18111638 | None:intergenic |
| AGTTAAGCACCATAATTGAA+GGG | 0.568316 | 4.4:-18121264 | MS.gene34983:CDS |
| GCACAAATGATCATACTAGC+TGG | 0.568613 | 4.4:-18121525 | MS.gene34983:CDS |
| TCGGTGGGAACATACTTGAC+TGG | 0.568854 | 4.4:+18114439 | None:intergenic |
| ATGATAACTTATTCATGCCA+AGG | 0.569926 | 4.4:+18117436 | None:intergenic |
| CTTGTCCAGGACGGCTATCG+TGG | 0.569928 | 4.4:-18121014 | MS.gene34983:intron |
| GAAAGCTGTCCTTGCAAATG+CGG | 0.571222 | 4.4:+18120341 | None:intergenic |
| CATCAATGAAAGTGTTGTAG+AGG | 0.573406 | 4.4:-18114017 | MS.gene34983:CDS |
| CTGGGAAAAGATAGTGTGCT+TGG | 0.574208 | 4.4:+18111028 | None:intergenic |
| TTCAGGGTTATTACATGCTG+CGG | 0.574831 | 4.4:-18111680 | MS.gene34983:CDS |
| GCATCTCCCAGTAAGCAGCT+TGG | 0.576636 | 4.4:+18114607 | None:intergenic |
| TTGGAGATGATGAGGAACTC+GGG | 0.577198 | 4.4:-18116168 | MS.gene34983:CDS |
| GTAGCCTTGTTGAAAGACCT+TGG | 0.580182 | 4.4:-18121298 | MS.gene34983:CDS |
| CTTCAATGGAAGACTTCTTG+TGG | 0.580242 | 4.4:-18113046 | MS.gene34983:CDS |
| TATGACAAACTTTGAGGTGG+TGG | 0.581509 | 4.4:+18111259 | None:intergenic |
| TGTGAAGGAACCAGAGCTGC+TGG | 0.583150 | 4.4:+18112618 | None:intergenic |
| ATGATCATACTAGCTGGTCC+AGG | 0.583245 | 4.4:-18121519 | MS.gene34983:CDS |
| GGAGGAACTTGTAGTAACTT+GGG | 0.585618 | 4.4:+18114460 | None:intergenic |
| ATATATAAGAGGGGAAACAA+TGG | 0.588945 | 4.4:-18112718 | MS.gene34983:CDS |
| AAAACGTCGCTGTTGCTTGG+GGG | 0.590953 | 4.4:-18121352 | MS.gene34983:CDS |
| GAATAAGTTATCATCAGCTA+AGG | 0.591134 | 4.4:-18117427 | MS.gene34983:intron |
| CAGACGTGATCCCGAACGCA+AGG | 0.591474 | 4.4:+18120818 | None:intergenic |
| GACGGCAGAGCATCCAACAT+AGG | 0.594632 | 4.4:+18113453 | None:intergenic |
| TTAAATGACATTGAAGGTGA+AGG | 0.595505 | 4.4:-18116106 | MS.gene34983:CDS |
| TATGGTACTCATCATCGGCT+GGG | 0.600265 | 4.4:-18122804 | MS.gene34983:CDS |
| GGCAGAATCAGCAGAAACAG+AGG | 0.601053 | 4.4:-18111591 | MS.gene34983:CDS |
| TTTGCAAGGACAGCTTTCAA+GGG | 0.602190 | 4.4:-18120336 | MS.gene34983:CDS |
| TGAGCAAAGCGACAGTGTAA+GGG | 0.603045 | 4.4:+18127222 | None:intergenic |
| TAGGAAGCTTAACCATAGGA+GGG | 0.603732 | 4.4:+18113493 | None:intergenic |
| TGAAGCTGAAGCTGAAAGCA+GGG | 0.603810 | 4.4:+18127364 | None:intergenic |
| CGTTAACAAACTTCTGATCG+TGG | 0.604443 | 4.4:+18111294 | None:intergenic |
| TGGTGAACTTGGAGATGATG+AGG | 0.606363 | 4.4:-18116176 | MS.gene34983:CDS |
| GAAGGATATGTCAAACCTCA+AGG | 0.608024 | 4.4:-18112663 | MS.gene34983:CDS |
| AGTGGTCCACGAACTGAAGA+CGG | 0.608054 | 4.4:+18113435 | None:intergenic |
| GGGGAAGTAATAGTTTGGAA+AGG | 0.611142 | 4.4:+18112808 | None:intergenic |
| TCATCGGCTGGGAAAGATTG+GGG | 0.611442 | 4.4:-18122793 | MS.gene34983:CDS |
| ATTGTTGTCGAGCAATTCTG+TGG | 0.612263 | 4.4:+18114346 | None:intergenic |
| CTTGGTGCAGTCAAATCAGA+AGG | 0.612515 | 4.4:-18111205 | MS.gene34983:CDS |
| ATCAATGAAAGTGTTGTAGA+GGG | 0.612681 | 4.4:-18114016 | MS.gene34983:CDS |
| GTTAATTTCTCAAATATCTG+GGG | 0.614184 | 4.4:+18112789 | None:intergenic |
| AAGCTTCGATTCCCATGTGA+AGG | 0.617052 | 4.4:+18112603 | None:intergenic |
| ACAAGAAGTCTTCCATTGAA+GGG | 0.617197 | 4.4:+18113048 | None:intergenic |
| TCTGATTTGACTGCACCAAG+TGG | 0.618381 | 4.4:+18111208 | None:intergenic |
| AAAATGTAACTAACTTCGGT+GGG | 0.618493 | 4.4:+18114424 | None:intergenic |
| GTTAAGCACCATAATTGAAG+GGG | 0.621552 | 4.4:-18121263 | MS.gene34983:CDS |
| GCTGAGCATATATGGGAGCA+TGG | 0.622094 | 4.4:-18111527 | MS.gene34983:intron |
| ATCTGGTTGAAGCTAGAGCA+AGG | 0.622880 | 4.4:-18111762 | MS.gene34983:CDS |
| ACTGGGAGATGCTTGATGAA+GGG | 0.625192 | 4.4:-18114596 | MS.gene34983:CDS |
| TCATTCTCTGAAGAAGAAGG+TGG | 0.626461 | 4.4:+18127332 | None:intergenic |
| GGCACCAAGGTCTTTCAACA+AGG | 0.628942 | 4.4:+18121294 | None:intergenic |
| TCTTGGAGAGACCTTCAACT+GGG | 0.632984 | 4.4:-18120966 | MS.gene34983:CDS |
| ACCACTTGTAAGCGGTACAA+AGG | 0.633296 | 4.4:-18113418 | MS.gene34983:CDS |
| GTCACATAGGGGCTCCGATG+AGG | 0.633886 | 4.4:+18114512 | None:intergenic |
| AGGAACCAGAGCTGCTGGTG+CGG | 0.633962 | 4.4:+18112623 | None:intergenic |
| AACAAACTTCTGATCGTGGG+AGG | 0.634561 | 4.4:+18111298 | None:intergenic |
| GTTAACAAACTTCTGATCGT+GGG | 0.634598 | 4.4:+18111295 | None:intergenic |
| TAATATCCTAATGCTATCAG+TGG | 0.634949 | 4.4:-18114553 | MS.gene34983:CDS |
| AAAAGAACATTGGAGTGAAG+GGG | 0.640108 | 4.4:-18111168 | MS.gene34983:CDS |
| GAGCCCCTATGTGACTGGAA+AGG | 0.641295 | 4.4:-18114504 | MS.gene34983:CDS |
| GTTCGTGGACCACTTGTAAG+CGG | 0.642715 | 4.4:-18113426 | MS.gene34983:CDS |
| TTTATAGGCTCAAGAGAGTG+CGG | 0.648228 | 4.4:-18120479 | MS.gene34983:intron |
| CCAAGTGGACGACTTTGACG+TGG | 0.649192 | 4.4:+18111223 | None:intergenic |
| TGGTTGGTTTAGCGTTCGGG+TGG | 0.652099 | 4.4:-18117650 | MS.gene34983:intron |
| AGGATCCAAGAGCAATGCCA+AGG | 0.652380 | 4.4:+18127198 | None:intergenic |
| CAGCTCTGGTTCCTTCACAT+GGG | 0.654821 | 4.4:-18112614 | MS.gene34983:CDS |
| TTGTTGTCGAGCAATTCTGT+GGG | 0.658504 | 4.4:+18114347 | None:intergenic |
| AAACCTTTCCAGTCACATAG+GGG | 0.659439 | 4.4:+18114501 | None:intergenic |
| AGAAATATATCTCTTCACTG+TGG | 0.659537 | 4.4:+18116132 | None:intergenic |
| TTGAAGAAGATATCATTGTG+AGG | 0.660404 | 4.4:-18111060 | MS.gene34983:CDS |
| GTGGGAACATACTTGACTGG+AGG | 0.673571 | 4.4:+18114442 | None:intergenic |
| AATGACCATATATATAAGAG+GGG | 0.673850 | 4.4:-18112727 | MS.gene34983:CDS |
| AACCGATAGTGAAAGTGACA+AGG | 0.676612 | 4.4:+18118643 | None:intergenic |
| TCACTTTCAGATGCACGATG+AGG | 0.681415 | 4.4:+18116076 | None:intergenic |
| GGATATGACAAACTTTGAGG+TGG | 0.695636 | 4.4:+18111256 | None:intergenic |
| CATATGCATAGAGAAGCAAG+AGG | 0.695865 | 4.4:+18118786 | None:intergenic |
| GAAAGCAGGGAAAAGGAAAG+CGG | 0.699197 | 4.4:+18127377 | None:intergenic |
| GGTCTTTATGAAGTGCTGAG+TGG | 0.701975 | 4.4:-18113161 | MS.gene34983:CDS |
| AAGGAAGCAATGAAATTACG+TGG | 0.710321 | 4.4:-18113399 | MS.gene34983:CDS |
| ATCTGAAAGTGATAGCAACG+TGG | 0.773185 | 4.4:-18116065 | MS.gene34983:CDS |
| GAAGTGTAATATGAACTGTG+TGG | 0.823690 | 4.4:+18117458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18111009 | 18127414 | 18111009 | ID=MS.gene34983 |
| chr4.4 | mRNA | 18111009 | 18127414 | 18111009 | ID=MS.gene34983.t1;Parent=MS.gene34983 |
| chr4.4 | exon | 18127195 | 18127414 | 18127195 | ID=MS.gene34983.t1.exon1;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18127195 | 18127414 | 18127195 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18122778 | 18122828 | 18122778 | ID=MS.gene34983.t1.exon2;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18122778 | 18122828 | 18122778 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18122506 | 18122597 | 18122506 | ID=MS.gene34983.t1.exon3;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18122506 | 18122597 | 18122506 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18121479 | 18121556 | 18121479 | ID=MS.gene34983.t1.exon4;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18121479 | 18121556 | 18121479 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18121244 | 18121401 | 18121244 | ID=MS.gene34983.t1.exon5;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18121244 | 18121401 | 18121244 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18120926 | 18121027 | 18120926 | ID=MS.gene34983.t1.exon6;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18120926 | 18121027 | 18120926 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18120735 | 18120852 | 18120735 | ID=MS.gene34983.t1.exon7;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18120735 | 18120852 | 18120735 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18120442 | 18120494 | 18120442 | ID=MS.gene34983.t1.exon8;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18120442 | 18120494 | 18120442 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18120306 | 18120371 | 18120306 | ID=MS.gene34983.t1.exon9;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18120306 | 18120371 | 18120306 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18119539 | 18119583 | 18119539 | ID=MS.gene34983.t1.exon10;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18119539 | 18119583 | 18119539 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18119320 | 18119372 | 18119320 | ID=MS.gene34983.t1.exon11;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18119320 | 18119372 | 18119320 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18118640 | 18118824 | 18118640 | ID=MS.gene34983.t1.exon12;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18118640 | 18118824 | 18118640 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18117613 | 18117660 | 18117613 | ID=MS.gene34983.t1.exon13;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18117613 | 18117660 | 18117613 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18117428 | 18117535 | 18117428 | ID=MS.gene34983.t1.exon14;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18117428 | 18117535 | 18117428 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18116023 | 18116254 | 18116023 | ID=MS.gene34983.t1.exon15;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18116023 | 18116254 | 18116023 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18114331 | 18114633 | 18114331 | ID=MS.gene34983.t1.exon16;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18114331 | 18114633 | 18114331 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18113967 | 18114064 | 18113967 | ID=MS.gene34983.t1.exon17;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18113967 | 18114064 | 18113967 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18113651 | 18113782 | 18113651 | ID=MS.gene34983.t1.exon18;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18113651 | 18113782 | 18113651 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18113332 | 18113541 | 18113332 | ID=MS.gene34983.t1.exon19;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18113332 | 18113541 | 18113332 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18113043 | 18113249 | 18113043 | ID=MS.gene34983.t1.exon20;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18113043 | 18113249 | 18113043 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18112583 | 18112844 | 18112583 | ID=MS.gene34983.t1.exon21;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18112583 | 18112844 | 18112583 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18111528 | 18111823 | 18111528 | ID=MS.gene34983.t1.exon22;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18111528 | 18111823 | 18111528 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| chr4.4 | exon | 18111009 | 18111329 | 18111009 | ID=MS.gene34983.t1.exon23;Parent=MS.gene34983.t1 |
| chr4.4 | CDS | 18111009 | 18111329 | 18111009 | ID=cds.MS.gene34983.t1;Parent=MS.gene34983.t1 |
| Gene Sequence |
| Protein sequence |
