Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35073.t1 | XP_013457255.1 | 98.7 | 790 | 10 | 0 | 1 | 790 | 1 | 790 | 0.00E+00 | 1575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35073.t1 | Q641I1 | 41.4 | 278 | 148 | 5 | 502 | 777 | 1098 | 1362 | 1.9e-51 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35073.t1 | A0A072UPJ0 | 98.7 | 790 | 10 | 0 | 1 | 790 | 1 | 790 | 0.0e+00 | 1575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049744 | MS.gene35073 | 0.839749 | 1.32E-57 | -1.69E-46 |
| MS.gene050257 | MS.gene35073 | 0.829613 | 4.67E-55 | -1.69E-46 |
| MS.gene050258 | MS.gene35073 | 0.804521 | 2.08E-49 | -1.69E-46 |
| MS.gene050348 | MS.gene35073 | 0.832793 | 7.72E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene35073 | 0.843936 | 1.03E-58 | -1.69E-46 |
| MS.gene054585 | MS.gene35073 | 0.808131 | 3.60E-50 | -1.69E-46 |
| MS.gene058633 | MS.gene35073 | 0.963208 | 8.35E-122 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35073.t1 | MTR_4g094378 | 98.734 | 790 | 10 | 0 | 1 | 790 | 1 | 790 | 0.0 | 1629 |
| MS.gene35073.t1 | MTR_1g007420 | 59.240 | 763 | 286 | 10 | 38 | 790 | 139 | 886 | 0.0 | 914 |
| MS.gene35073.t1 | MTR_3g110690 | 56.340 | 765 | 313 | 11 | 38 | 790 | 2 | 757 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35073.t1 | AT1G09980 | 54.321 | 810 | 342 | 9 | 1 | 790 | 1 | 802 | 0.0 | 875 |
| MS.gene35073.t1 | AT1G09980 | 54.321 | 810 | 342 | 9 | 1 | 790 | 1 | 802 | 0.0 | 875 |
| MS.gene35073.t1 | AT1G58350 | 54.613 | 813 | 327 | 12 | 1 | 790 | 1 | 794 | 0.0 | 871 |
| MS.gene35073.t1 | AT1G58350 | 54.613 | 813 | 327 | 12 | 1 | 790 | 1 | 794 | 0.0 | 871 |
| MS.gene35073.t1 | AT1G58350 | 54.613 | 813 | 327 | 12 | 1 | 790 | 1 | 794 | 0.0 | 871 |
| MS.gene35073.t1 | AT1G09980 | 54.321 | 810 | 341 | 10 | 1 | 790 | 1 | 801 | 0.0 | 870 |
| MS.gene35073.t1 | AT1G58350 | 73.723 | 274 | 67 | 1 | 522 | 790 | 438 | 711 | 1.80e-140 | 431 |
| MS.gene35073.t1 | AT1G58350 | 44.118 | 476 | 228 | 11 | 1 | 457 | 1 | 457 | 5.33e-122 | 383 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAATTCTCTATTCAATTC+AGG | 0.191230 | 4.4:+20260534 | MS.gene35073:CDS |
| CTTCAAGACATGTATATATT+TGG | 0.191479 | 4.4:+20259164 | MS.gene35073:CDS |
| ATGCAGATGGTACAAAATTA+AGG | 0.250319 | 4.4:+20254989 | MS.gene35073:intron |
| AAAAGAATTTGTCAACTAAA+AGG | 0.258176 | 4.4:+20254739 | MS.gene35073:CDS |
| AGGGAAATCATTTGGATTTA+CGG | 0.261407 | 4.4:+20260090 | MS.gene35073:intron |
| AAGTGATCTCTTTCCTAAAA+AGG | 0.278922 | 4.4:+20260228 | MS.gene35073:CDS |
| CTCTATTCAATTCAGGGCTT+TGG | 0.283617 | 4.4:+20260541 | MS.gene35073:CDS |
| ATCTCATTCTACCTAGCTTT+TGG | 0.288740 | 4.4:+20256559 | MS.gene35073:CDS |
| CTGACAATTTATGTAGAGTT+TGG | 0.303507 | 4.4:+20256452 | MS.gene35073:CDS |
| TGTAATCCCAGAAGAGCTTT+AGG | 0.305888 | 4.4:-20257083 | None:intergenic |
| ACGCGTTCTACAATAATAAT+AGG | 0.308080 | 4.4:-20259203 | None:intergenic |
| AGCAGCTCATATAGAGTTCT+TGG | 0.309109 | 4.4:+20261785 | MS.gene35073:CDS |
| TAAAATTCAGGGAAATCATT+TGG | 0.309549 | 4.4:+20260082 | MS.gene35073:intron |
| TTGAATCAGATGATACAAAA+TGG | 0.314689 | 4.4:+20258067 | MS.gene35073:CDS |
| CTTTGTTATCTAAACATCTC+TGG | 0.315177 | 4.4:-20261846 | None:intergenic |
| GTATACCTATGTGTCGATAT+CGG | 0.316268 | 4.4:+20260485 | MS.gene35073:CDS |
| TTGAATTTCTGCGCAAATCC+TGG | 0.325382 | 4.4:+20258722 | MS.gene35073:CDS |
| AATCACCTCAGCTGCCTGAT+AGG | 0.328592 | 4.4:+20258136 | MS.gene35073:CDS |
| CGCATTATTGCAGTTTGAAT+AGG | 0.328610 | 4.4:-20259008 | None:intergenic |
| GGCAAGTGATTTGGCCTTGT+TGG | 0.331290 | 4.4:-20254786 | None:intergenic |
| CATGCTCCTATGACTGCTAC+TGG | 0.333893 | 4.4:+20256856 | MS.gene35073:CDS |
| AGATGATCATCCCAAGAAAA+AGG | 0.335417 | 4.4:-20258318 | None:intergenic |
| CATCCATCAACTGACCTTTA+CGG | 0.338542 | 4.4:+20260593 | MS.gene35073:CDS |
| GCAAGTGATTTGGCCTTGTT+GGG | 0.350558 | 4.4:-20254785 | None:intergenic |
| CCTGCCTTGCATATCTAATC+TGG | 0.357865 | 4.4:-20256516 | None:intergenic |
| ATCTGGCGACTTCAGAGAAA+TGG | 0.359053 | 4.4:+20260187 | MS.gene35073:CDS |
| TCATACTGAACAACCCTTGC+CGG | 0.370087 | 4.4:-20255056 | None:intergenic |
| GGTCAGAGGAAGTTCGGATT+TGG | 0.373363 | 4.4:-20261686 | None:intergenic |
| AGATTCTTATCCCGGGATTC+CGG | 0.376738 | 4.4:+20255037 | MS.gene35073:CDS |
| CTATCGGTAATCTCATTGTC+AGG | 0.387190 | 4.4:+20260315 | MS.gene35073:CDS |
| CGGAGATTTAGATGGTTTGT+TGG | 0.388934 | 4.4:+20254708 | MS.gene35073:CDS |
| GGAGAACTGAATGGTCAATA+TGG | 0.393372 | 4.4:+20258755 | MS.gene35073:CDS |
| GTCGATATCGGGTCCACACT+TGG | 0.395614 | 4.4:+20260497 | MS.gene35073:CDS |
| AACAACCCTTGCCGGAATCC+CGG | 0.400097 | 4.4:-20255048 | None:intergenic |
| AATTAAGGTTACTATGAGAT+TGG | 0.402101 | 4.4:+20255004 | MS.gene35073:CDS |
| TCAAGGTTAGGCAAGTGATT+TGG | 0.403889 | 4.4:-20254795 | None:intergenic |
| ATTGTTCACCATCAATACTT+TGG | 0.404100 | 4.4:-20258116 | None:intergenic |
| GCACTGACTTCTTCCCTATC+AGG | 0.404605 | 4.4:-20258150 | None:intergenic |
| CGAATCAGCTCTTATATCTC+TGG | 0.407257 | 4.4:+20258364 | MS.gene35073:CDS |
| GACATTAGAAACTGTATCTC+GGG | 0.408136 | 4.4:-20260143 | None:intergenic |
| ATATGTTTCGGAGATTTAGA+TGG | 0.411888 | 4.4:+20254700 | None:intergenic |
| CGCGATGGTCAGAGGAAGTT+CGG | 0.414981 | 4.4:-20261692 | None:intergenic |
| CGAATTCTCTATTCAATTCA+GGG | 0.417165 | 4.4:+20260535 | MS.gene35073:CDS |
| GTAATCCCAGAAGAGCTTTA+GGG | 0.418437 | 4.4:-20257082 | None:intergenic |
| AGTGGGAGTAGCCAGCAAAA+TGG | 0.418914 | 4.4:+20259329 | MS.gene35073:CDS |
| ATGTCCTAAGCAATGGTTCC+AGG | 0.419292 | 4.4:+20259291 | MS.gene35073:CDS |
| GTGGGAGTAGCCAGCAAAAT+GGG | 0.420182 | 4.4:+20259330 | MS.gene35073:CDS |
| ACTTACTGCTACATATGTTT+CGG | 0.420808 | 4.4:+20254688 | None:intergenic |
| AATGAAGTTTGAATTCAAAC+TGG | 0.428284 | 4.4:-20259246 | None:intergenic |
| AGAAGACGCTGGAAAACTTT+CGG | 0.432504 | 4.4:+20261049 | MS.gene35073:CDS |
| ACTGTGCCCAGCAGCTTCTT+CGG | 0.435625 | 4.4:+20261611 | MS.gene35073:CDS |
| AACTTCAACGCTTCTTCCTA+CGG | 0.438744 | 4.4:+20261735 | MS.gene35073:CDS |
| GTATACAAGTATCTTAGATA+TGG | 0.439686 | 4.4:-20260468 | None:intergenic |
| TTTGTTATCTAAACATCTCT+GGG | 0.444284 | 4.4:-20261845 | None:intergenic |
| ACTAAACTTGTTTGTGGACC+TGG | 0.445595 | 4.4:-20259309 | None:intergenic |
| TAATGCGTGCAGAACTTCAT+AGG | 0.447317 | 4.4:+20259024 | MS.gene35073:CDS |
| GCACGTGTCCAAAGTATTGA+TGG | 0.455150 | 4.4:+20258108 | MS.gene35073:CDS |
| TATACCTATGTGTCGATATC+GGG | 0.465136 | 4.4:+20260486 | MS.gene35073:CDS |
| ATTGTCAGGGCAGCCTTAGC+AGG | 0.466145 | 4.4:+20260329 | MS.gene35073:CDS |
| GCAAATGAAGAGAAAACATC+TGG | 0.466183 | 4.4:+20260170 | MS.gene35073:CDS |
| ATGAAAGTATTCTCAAGATC+AGG | 0.468624 | 4.4:-20260621 | None:intergenic |
| AAATTGTCAGAACCTACTTC+AGG | 0.470222 | 4.4:-20256439 | None:intergenic |
| TGATTTGGCCTTGTTGGGCC+AGG | 0.471182 | 4.4:-20254780 | None:intergenic |
| TTGGCTATTGAAGAAGTTCA+AGG | 0.476659 | 4.4:+20260560 | MS.gene35073:CDS |
| GTCTGATTTACAAGGTTCAC+TGG | 0.477160 | 4.4:+20257022 | MS.gene35073:CDS |
| ACTAACCCAGTAGCAGTCAT+AGG | 0.488470 | 4.4:-20256862 | None:intergenic |
| AGTTTGGATGATTGATGATA+CGG | 0.489447 | 4.4:+20256468 | MS.gene35073:CDS |
| GTTGGTGAAGATTCTTATCC+CGG | 0.489620 | 4.4:+20255029 | MS.gene35073:CDS |
| ACTCCCACTAAACTTGTTTG+TGG | 0.495464 | 4.4:-20259315 | None:intergenic |
| TGGACCTGGAACCATTGCTT+AGG | 0.495670 | 4.4:-20259295 | None:intergenic |
| CATCCGTAAAGGTCAGTTGA+TGG | 0.496688 | 4.4:-20260596 | None:intergenic |
| TTTCAGTCAAATCAATAGCT+TGG | 0.497020 | 4.4:-20258038 | None:intergenic |
| TGAATTTCTGCGCAAATCCT+GGG | 0.498276 | 4.4:+20258723 | MS.gene35073:CDS |
| AGGTCCACAAACAAGTTTAG+TGG | 0.498908 | 4.4:+20259311 | MS.gene35073:CDS |
| TGAGCTGCAGCTCCTGAAGT+AGG | 0.499693 | 4.4:+20256427 | MS.gene35073:intron |
| CTCATAAATAATACCTGCTA+AGG | 0.499861 | 4.4:-20260342 | None:intergenic |
| AGCTTCGTTGGTCATTCTAT+CGG | 0.501317 | 4.4:+20260299 | MS.gene35073:CDS |
| TCTGGCGACTTCAGAGAAAT+GGG | 0.501567 | 4.4:+20260188 | MS.gene35073:CDS |
| AGGAACTTAAACACACTTAT+CGG | 0.501670 | 4.4:+20261759 | MS.gene35073:CDS |
| TTATCCCGGGATTCCGGCAA+GGG | 0.502957 | 4.4:+20255043 | MS.gene35073:CDS |
| CGGGGTCTATTAAAAGCCAT+TGG | 0.503415 | 4.4:-20260124 | None:intergenic |
| GATATCAAGCTCAGCTTCGT+TGG | 0.503921 | 4.4:+20260287 | MS.gene35073:CDS |
| TGATGCTTTCCATGCTGTCA+TGG | 0.505223 | 4.4:+20257127 | MS.gene35073:CDS |
| ACAACCCTTGCCGGAATCCC+GGG | 0.506959 | 4.4:-20255047 | None:intergenic |
| ATCACCTCAGCTGCCTGATA+GGG | 0.508140 | 4.4:+20258137 | MS.gene35073:CDS |
| ATGTATTTCTGAAATTCCAC+AGG | 0.508977 | 4.4:+20258388 | MS.gene35073:CDS |
| TTTCGATGCAGATCAACAAT+CGG | 0.512442 | 4.4:+20259138 | MS.gene35073:intron |
| TTGCGCAGGTCTGATTTACA+AGG | 0.512635 | 4.4:+20257014 | MS.gene35073:intron |
| AATTACGCTGAAGATTATGT+TGG | 0.515085 | 4.4:+20257738 | MS.gene35073:CDS |
| AATAATTCCAGAAAGCATGA+TGG | 0.516655 | 4.4:+20260443 | MS.gene35073:intron |
| TAAGGTTACTATGAGATTGG+AGG | 0.517202 | 4.4:+20255007 | MS.gene35073:CDS |
| TCAATACTTTGGACACGTGC+TGG | 0.518051 | 4.4:-20258105 | None:intergenic |
| ATTACGCTGAAGATTATGTT+GGG | 0.519193 | 4.4:+20257739 | MS.gene35073:CDS |
| TACGGCTTGTTCGTAACCAA+TGG | 0.520931 | 4.4:+20260108 | MS.gene35073:CDS |
| CTTATCCCGGGATTCCGGCA+AGG | 0.521440 | 4.4:+20255042 | MS.gene35073:CDS |
| GCAAATCCTGGGCTGTTGAT+CGG | 0.521937 | 4.4:+20258734 | MS.gene35073:CDS |
| GATGCTCATCAAAGCATTGA+TGG | 0.522659 | 4.4:+20257963 | MS.gene35073:CDS |
| TCTATTCTAGCAGAATGATA+AGG | 0.527610 | 4.4:-20261588 | None:intergenic |
| GAATTGTACCAGTGACTGTA+GGG | 0.527884 | 4.4:+20257704 | MS.gene35073:intron |
| CCAGATTAGATATGCAAGGC+AGG | 0.531143 | 4.4:+20256516 | MS.gene35073:CDS |
| ACAGATGCTAAATAATTGCT+TGG | 0.532785 | 4.4:+20261662 | MS.gene35073:CDS |
| CAACTTCATGAACAGCATCA+AGG | 0.534210 | 4.4:-20254812 | None:intergenic |
| TGACATTAGAAACTGTATCT+CGG | 0.536231 | 4.4:-20260144 | None:intergenic |
| CATGATTACGCGATGGTCAG+AGG | 0.538432 | 4.4:-20261700 | None:intergenic |
| TTCGATGCAGATCAACAATC+GGG | 0.540738 | 4.4:+20259139 | MS.gene35073:intron |
| TCAACGCTTCTTCCTACGGC+AGG | 0.541831 | 4.4:+20261739 | MS.gene35073:CDS |
| GCAAGGGTTGTTCAGTATGA+AGG | 0.542623 | 4.4:+20255059 | MS.gene35073:CDS |
| TTTCATCTATAATCTTTCCA+AGG | 0.548074 | 4.4:+20260638 | MS.gene35073:CDS |
| TATATGCACAACAAAGTTGA+GGG | 0.548369 | 4.4:+20258811 | MS.gene35073:CDS |
| CCTCATATTCACCAAAAGCT+AGG | 0.548403 | 4.4:-20256570 | None:intergenic |
| GGCGAGGCATATCACAAATG+AGG | 0.549481 | 4.4:+20259045 | MS.gene35073:CDS |
| GAATTTGTCAACTAAAAGGT+TGG | 0.552284 | 4.4:+20254743 | MS.gene35073:CDS |
| GAATTCAAACTTCATTTCTG+TGG | 0.555232 | 4.4:+20259253 | MS.gene35073:CDS |
| CTTGCATATCTAATCTGGAA+TGG | 0.563392 | 4.4:-20256511 | None:intergenic |
| ACAGAAGTTCATTAAATACA+AGG | 0.563774 | 4.4:+20258857 | MS.gene35073:CDS |
| AAAAGGTTGAACTGATTCCT+CGG | 0.567378 | 4.4:-20258301 | None:intergenic |
| ATGAACTTCTGTGTAAGCTA+TGG | 0.570881 | 4.4:-20258846 | None:intergenic |
| TTGGTCAATGCTGATCAACC+TGG | 0.571852 | 4.4:+20254762 | MS.gene35073:CDS |
| GTTACTATGAGATTGGAGGT+TGG | 0.574527 | 4.4:+20255011 | MS.gene35073:CDS |
| TCGATATCGGGTCCACACTT+GGG | 0.574688 | 4.4:+20260498 | MS.gene35073:CDS |
| TGAATTGTACCAGTGACTGT+AGG | 0.582373 | 4.4:+20257703 | MS.gene35073:intron |
| AGTTCTCCGATCAACAGCCC+AGG | 0.586596 | 4.4:-20258740 | None:intergenic |
| TGGAAAGCATCAAAGTGGAT+AGG | 0.589707 | 4.4:-20257116 | None:intergenic |
| TGGCTATTGAAGAAGTTCAA+GGG | 0.589842 | 4.4:+20260561 | MS.gene35073:CDS |
| TCATGAACAGCATCAAGGTT+AGG | 0.591446 | 4.4:-20254807 | None:intergenic |
| AATATGGATGGTGTACTCAA+AGG | 0.598801 | 4.4:+20258771 | MS.gene35073:CDS |
| AAGATCAGGATCATCCGTAA+AGG | 0.598968 | 4.4:-20260607 | None:intergenic |
| TGTGTTTAAGTTCCTGCCGT+AGG | 0.599390 | 4.4:-20261751 | None:intergenic |
| ATATATGCACAACAAAGTTG+AGG | 0.599454 | 4.4:+20258810 | MS.gene35073:CDS |
| ATGCTCCTATGACTGCTACT+GGG | 0.599526 | 4.4:+20256857 | MS.gene35073:CDS |
| GCAAGGCATGTCCTAAGCAA+TGG | 0.600325 | 4.4:+20259284 | MS.gene35073:CDS |
| GATCTGAAAAGAATAAGCAC+AGG | 0.602066 | 4.4:+20258009 | MS.gene35073:CDS |
| GGTCCACAAACAAGTTTAGT+GGG | 0.604387 | 4.4:+20259312 | MS.gene35073:CDS |
| TTGGTGAAGATTCTTATCCC+GGG | 0.604750 | 4.4:+20255030 | MS.gene35073:CDS |
| CTGATCAACCTGGCCCAACA+AGG | 0.604918 | 4.4:+20254772 | MS.gene35073:CDS |
| TTATCACACAATTCGACAGA+AGG | 0.607461 | 4.4:+20257187 | MS.gene35073:CDS |
| AACTGAATGGTCAATATGGA+TGG | 0.612659 | 4.4:+20258759 | MS.gene35073:CDS |
| TTGAATTCAAACTGGCAGAA+CGG | 0.613557 | 4.4:-20259238 | None:intergenic |
| AGCAATTATTTAGCATCTGT+AGG | 0.614495 | 4.4:-20261659 | None:intergenic |
| TCTTCCCTATCAGGCAGCTG+AGG | 0.617695 | 4.4:-20258141 | None:intergenic |
| GATACAGTTTCTAATGTCAG+AGG | 0.619769 | 4.4:+20260148 | MS.gene35073:CDS |
| GCGAGGCATATCACAAATGA+GGG | 0.621981 | 4.4:+20259046 | MS.gene35073:CDS |
| TAATCCCAGAAGAGCTTTAG+GGG | 0.624736 | 4.4:-20257081 | None:intergenic |
| TTGTATCAACCATGACAGCA+TGG | 0.625771 | 4.4:-20257136 | None:intergenic |
| CCAAATACAGGAGAAGACGC+TGG | 0.628853 | 4.4:+20261038 | MS.gene35073:intron |
| ATAATAATAGGAACAAGCAA+AGG | 0.629914 | 4.4:-20259191 | None:intergenic |
| AGATTATGTTGGGTCAAACA+AGG | 0.639267 | 4.4:+20257749 | MS.gene35073:CDS |
| TATCGGTAATCTCATTGTCA+GGG | 0.639335 | 4.4:+20260316 | MS.gene35073:CDS |
| TTGTTGTGCATATATTGATG+AGG | 0.641825 | 4.4:-20258802 | None:intergenic |
| CGTGCAGAACTTCATAGGCG+AGG | 0.643599 | 4.4:+20259029 | MS.gene35073:CDS |
| CATTCCAGATTAGATATGCA+AGG | 0.646025 | 4.4:+20256512 | MS.gene35073:CDS |
| TGGACCCGATATCGACACAT+AGG | 0.653112 | 4.4:-20260490 | None:intergenic |
| TAATATCAATTATCTAACCG+AGG | 0.655534 | 4.4:+20258284 | MS.gene35073:CDS |
| AAAGGAAGTTACCTGAGGCG+AGG | 0.656494 | 4.4:-20261088 | None:intergenic |
| TTTCTGTGGAGAATGATGCA+AGG | 0.657311 | 4.4:+20259267 | MS.gene35073:CDS |
| ATCCCAGAAGAGCTTTAGGG+GGG | 0.659435 | 4.4:-20257079 | None:intergenic |
| CAGCATGGAAAGCATCAAAG+TGG | 0.659782 | 4.4:-20257121 | None:intergenic |
| AGTGACTGTAGGGATTCAGA+AGG | 0.671188 | 4.4:+20257714 | MS.gene35073:intron |
| ATATGCACAACAAAGTTGAG+GGG | 0.678794 | 4.4:+20258812 | MS.gene35073:CDS |
| ACATTAGAAACTGTATCTCG+GGG | 0.679231 | 4.4:-20260142 | None:intergenic |
| CGCAGCGCATGATTACGCGA+TGG | 0.679459 | 4.4:-20261707 | None:intergenic |
| CAATTCGACAGAAGGTACCA+AGG | 0.680032 | 4.4:+20257195 | MS.gene35073:CDS |
| AATCCCAGAAGAGCTTTAGG+GGG | 0.680337 | 4.4:-20257080 | None:intergenic |
| CTGTTGATCGGAGAACTGAA+TGG | 0.680511 | 4.4:+20258746 | MS.gene35073:CDS |
| CTGTACATATAACCCAAGTG+TGG | 0.683359 | 4.4:-20260510 | None:intergenic |
| GCATATCTAATCTGGAATGG+CGG | 0.692647 | 4.4:-20256508 | None:intergenic |
| GAAGTTCATTAAATACAAGG+AGG | 0.717680 | 4.4:+20258860 | MS.gene35073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20254702 | 20261863 | 20254702 | ID=MS.gene35073 |
| chr4.4 | mRNA | 20254702 | 20261863 | 20254702 | ID=MS.gene35073.t1;Parent=MS.gene35073 |
| chr4.4 | exon | 20254702 | 20254880 | 20254702 | ID=MS.gene35073.t1.exon1;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20254702 | 20254880 | 20254702 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20254995 | 20255080 | 20254995 | ID=MS.gene35073.t1.exon2;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20254995 | 20255080 | 20254995 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20256437 | 20256591 | 20256437 | ID=MS.gene35073.t1.exon3;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20256437 | 20256591 | 20256437 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20256817 | 20256878 | 20256817 | ID=MS.gene35073.t1.exon4;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20256817 | 20256878 | 20256817 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20257022 | 20257216 | 20257022 | ID=MS.gene35073.t1.exon5;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20257022 | 20257216 | 20257022 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20257716 | 20257770 | 20257716 | ID=MS.gene35073.t1.exon6;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20257716 | 20257770 | 20257716 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20257961 | 20258164 | 20257961 | ID=MS.gene35073.t1.exon7;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20257961 | 20258164 | 20257961 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20258273 | 20258409 | 20258273 | ID=MS.gene35073.t1.exon8;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20258273 | 20258409 | 20258273 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20258702 | 20258894 | 20258702 | ID=MS.gene35073.t1.exon9;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20258702 | 20258894 | 20258702 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20259008 | 20259067 | 20259008 | ID=MS.gene35073.t1.exon10;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20259008 | 20259067 | 20259008 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20259149 | 20259391 | 20259149 | ID=MS.gene35073.t1.exon11;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20259149 | 20259391 | 20259149 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20260092 | 20260350 | 20260092 | ID=MS.gene35073.t1.exon12;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20260092 | 20260350 | 20260092 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20260454 | 20260659 | 20260454 | ID=MS.gene35073.t1.exon13;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20260454 | 20260659 | 20260454 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20261048 | 20261098 | 20261048 | ID=MS.gene35073.t1.exon14;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20261048 | 20261098 | 20261048 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| chr4.4 | exon | 20261576 | 20261863 | 20261576 | ID=MS.gene35073.t1.exon15;Parent=MS.gene35073.t1 |
| chr4.4 | CDS | 20261576 | 20261863 | 20261576 | ID=cds.MS.gene35073.t1;Parent=MS.gene35073.t1 |
| Gene Sequence |
| Protein sequence |
