Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35116.t1 | XP_013457305.1 | 97.9 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 1.50E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35116.t1 | O48916 | 62.7 | 228 | 85 | 0 | 1 | 228 | 1 | 228 | 8.6e-88 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35116.t1 | B7FND9 | 97.9 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 1.1e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene35116 | 0.801091 | 1.06E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene35116 | -0.822738 | 2.02E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene35116 | 0.833286 | 5.82E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35116.t1 | MTR_4g094525 | 97.899 | 238 | 5 | 0 | 1 | 238 | 1 | 238 | 4.07e-175 | 481 |
| MS.gene35116.t1 | MTR_4g094525 | 85.294 | 238 | 4 | 1 | 1 | 238 | 1 | 207 | 5.16e-144 | 401 |
| MS.gene35116.t1 | MTR_2g031370 | 69.068 | 236 | 72 | 1 | 1 | 236 | 13 | 247 | 8.22e-125 | 354 |
| MS.gene35116.t1 | MTR_2g031370 | 68.776 | 237 | 73 | 1 | 1 | 237 | 1 | 236 | 1.33e-124 | 353 |
| MS.gene35116.t1 | MTR_4g094522 | 82.609 | 115 | 20 | 0 | 1 | 115 | 1 | 115 | 6.82e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35116.t1 | AT2G34770 | 63.158 | 228 | 84 | 0 | 1 | 228 | 1 | 228 | 2.14e-108 | 312 |
| MS.gene35116.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 1.03e-106 | 308 |
| MS.gene35116.t1 | AT4G20870 | 61.603 | 237 | 90 | 1 | 1 | 237 | 1 | 236 | 1.03e-106 | 308 |
Find 67 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGTGATTCCAATTATT+TGG | 0.142082 | 4.4:+19819303 | MS.gene35116:CDS |
| ATGGGTTCATCAACCTATTA+TGG | 0.183910 | 4.4:+19819028 | MS.gene35116:CDS |
| GCAATTGGAACCCAAATAAT+TGG | 0.230184 | 4.4:-19819314 | None:intergenic |
| TTGGTGAAGATTATGATAAA+TGG | 0.262773 | 4.4:+19819009 | MS.gene35116:CDS |
| AAAAGAGGGAGGTGAGGAAC+AGG | 0.286347 | 4.4:-19819374 | None:intergenic |
| TCAATTGCTCCTGCTGTGTT+TGG | 0.295260 | 4.4:+19820448 | MS.gene35116:CDS |
| GTGGGTGATTCCAATTATTT+GGG | 0.302503 | 4.4:+19819304 | MS.gene35116:CDS |
| TTGGCATCACTTCACCACTA+TGG | 0.307245 | 4.4:+19821085 | MS.gene35116:CDS |
| GGGCCTTCCTTGCCCATAAT+AGG | 0.340890 | 4.4:-19819041 | None:intergenic |
| ATGTTCAAACTAAGAGCTAT+TGG | 0.342050 | 4.4:+19819459 | MS.gene35116:CDS |
| AGCTATCCATAGGGTGCTTA+TGG | 0.348531 | 4.4:-19819517 | None:intergenic |
| GAATAAACCCCTTGTTTGTC+AGG | 0.349453 | 4.4:+19818758 | MS.gene35116:CDS |
| TTTCTTTCATAGCAGTATCT+TGG | 0.357754 | 4.4:+19819067 | MS.gene35116:CDS |
| TGTTCAAACTAAGAGCTATT+GGG | 0.361825 | 4.4:+19819460 | MS.gene35116:CDS |
| AATTGTTACTTATCTACGTT+TGG | 0.364138 | 4.4:-19821151 | None:intergenic |
| CATTTATAACTCTTTCAGAT+TGG | 0.376626 | 4.4:+19819346 | MS.gene35116:CDS |
| ATTTATAACTCTTTCAGATT+GGG | 0.403789 | 4.4:+19819347 | MS.gene35116:CDS |
| AGGGTCCAGAGCCTTGGCTT+TGG | 0.410334 | 4.4:+19821066 | MS.gene35116:CDS |
| CACTTCACCACTATGGGATA+AGG | 0.426484 | 4.4:+19821092 | MS.gene35116:CDS |
| TGGGTTCATCAACCTATTAT+GGG | 0.432385 | 4.4:+19819029 | MS.gene35116:CDS |
| AAAACGGTGCAATAAGTATT+CGG | 0.433689 | 4.4:-19819429 | None:intergenic |
| TGGTGAAGATTATGATAAAT+GGG | 0.434108 | 4.4:+19819010 | MS.gene35116:CDS |
| ATTGCTCCTGCTGTGTTTGG+AGG | 0.436809 | 4.4:+19820451 | MS.gene35116:CDS |
| ACCATTTGAATCATCACTAC+AGG | 0.439539 | 4.4:+19821046 | MS.gene35116:CDS |
| TGATGCCAAAGCCAAGGCTC+TGG | 0.469577 | 4.4:-19821071 | None:intergenic |
| TTTGAACATGGAAAAGAAAA+CGG | 0.472915 | 4.4:-19819445 | None:intergenic |
| CTTTCATAGCAGTATCTTGG+AGG | 0.476416 | 4.4:+19819070 | MS.gene35116:CDS |
| CACTACAGGGTCCAGAGCCT+TGG | 0.478105 | 4.4:+19821060 | MS.gene35116:CDS |
| TGGCATCACTTCACCACTAT+GGG | 0.480111 | 4.4:+19821086 | MS.gene35116:CDS |
| ACACATTATTACTTGCATCA+TGG | 0.488209 | 4.4:+19820505 | MS.gene35116:CDS |
| ACAAGTCTTAAGCTATCCAT+AGG | 0.497021 | 4.4:-19819527 | None:intergenic |
| TAAATGAAACAAGATGCAAT+TGG | 0.498395 | 4.4:-19819329 | None:intergenic |
| ATGTGACAGGTTGGTCATCT+TGG | 0.510797 | 4.4:+19818990 | MS.gene35116:intron |
| AGTTCCTCCTCCATCAAAAG+TGG | 0.524440 | 4.4:+19821125 | MS.gene35116:CDS |
| CAACCTATTATGGGCAAGGA+AGG | 0.526322 | 4.4:+19819038 | MS.gene35116:CDS |
| AACACAGCAGGAGCAATTGA+AGG | 0.534894 | 4.4:-19820445 | None:intergenic |
| GGTGCTTATGGTGGCAACCA+TGG | 0.543946 | 4.4:-19819505 | None:intergenic |
| GCTATTAAAGCGGCTCCAGC+TGG | 0.544240 | 4.4:-19819557 | None:intergenic |
| ACATTGCATTATCTTCTCCA+TGG | 0.544817 | 4.4:+19819488 | MS.gene35116:CDS |
| ATGCCGAGTAGCACGAAAAG+AGG | 0.548185 | 4.4:-19819389 | None:intergenic |
| TTTCACGCGAACTGCTTGGT+GGG | 0.549072 | 4.4:+19819286 | MS.gene35116:CDS |
| ATTAAAGCGGCTCCAGCTGG+TGG | 0.557678 | 4.4:-19819554 | None:intergenic |
| AGTTGGTTACCTGACAAACA+AGG | 0.563299 | 4.4:-19818767 | None:intergenic |
| TTGCCACCATAAGCACCCTA+TGG | 0.565998 | 4.4:+19819511 | MS.gene35116:CDS |
| AGCCGCTTTAATAGCCTACA+TGG | 0.576385 | 4.4:+19819565 | MS.gene35116:CDS |
| GTTCAAACTAAGAGCTATTG+GGG | 0.580121 | 4.4:+19819461 | MS.gene35116:CDS |
| AGCACGAAAAGAGGGAGGTG+AGG | 0.582858 | 4.4:-19819380 | None:intergenic |
| CCCTGTAGTGATGATTCAAA+TGG | 0.586439 | 4.4:-19821047 | None:intergenic |
| TCATCAACCTATTATGGGCA+AGG | 0.588235 | 4.4:+19819034 | MS.gene35116:CDS |
| AATAGCTCTTAGTTTGAACA+TGG | 0.589170 | 4.4:-19819457 | None:intergenic |
| TAGAAAGGGGTATACCATGT+AGG | 0.600427 | 4.4:-19819579 | None:intergenic |
| AAAATGCCTCCAAACACAGC+AGG | 0.605294 | 4.4:-19820457 | None:intergenic |
| CAAGTCTTAAGCTATCCATA+GGG | 0.618487 | 4.4:-19819526 | None:intergenic |
| TGCCGAGTAGCACGAAAAGA+GGG | 0.619206 | 4.4:-19819388 | None:intergenic |
| TATCCATAGGGTGCTTATGG+TGG | 0.620677 | 4.4:-19819514 | None:intergenic |
| GTGAAGTGATGCCAAAGCCA+AGG | 0.625285 | 4.4:-19821077 | None:intergenic |
| ACAGCAGGAGCAATTGAAGG+AGG | 0.629758 | 4.4:-19820442 | None:intergenic |
| CCATTTGAATCATCACTACA+GGG | 0.637039 | 4.4:+19821047 | MS.gene35116:CDS |
| AAAGAGGGAGGTGAGGAACA+GGG | 0.637398 | 4.4:-19819373 | None:intergenic |
| GTTGGTTACCTGACAAACAA+GGG | 0.639760 | 4.4:-19818766 | None:intergenic |
| TTGGTTACCTGACAAACAAG+GGG | 0.643258 | 4.4:-19818765 | None:intergenic |
| CAGCAGGAGCAATTGAAGGA+GGG | 0.648334 | 4.4:-19820441 | None:intergenic |
| TACTGCTATGAAAGAAACGA+GGG | 0.655830 | 4.4:-19819061 | None:intergenic |
| TACCATGTAGGCTATTAAAG+CGG | 0.682242 | 4.4:-19819567 | None:intergenic |
| CGAGTAGCACGAAAAGAGGG+AGG | 0.696341 | 4.4:-19819385 | None:intergenic |
| ATACTGCTATGAAAGAAACG+AGG | 0.714480 | 4.4:-19819062 | None:intergenic |
| AGGGAATACAAGCTTCACTG+AGG | 0.754775 | 4.4:-19820422 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAACTCTTTATTA+TGG | + | chr4.4:19819718-19819737 | MS.gene35116:intron | 10.0% |
| !!! | ATAATCAATTTTAATGCATA+TGG | - | chr4.4:19819144-19819163 | None:intergenic | 15.0% |
| !!! | TCAACTATTTTAAAGAAATT+TGG | + | chr4.4:19820815-19820834 | MS.gene35116:intron | 15.0% |
| !!! | TGCATTAAAATTGATTATTT+TGG | + | chr4.4:19819146-19819165 | MS.gene35116:intron | 15.0% |
| !! | AAATCATGCATATAATGAAA+AGG | - | chr4.4:19819634-19819653 | None:intergenic | 20.0% |
| !! | AACAAAAGAAAAATGTAGAA+AGG | - | chr4.4:19819597-19819616 | None:intergenic | 20.0% |
| !! | ACAAAAGAAAAATGTAGAAA+GGG | - | chr4.4:19819596-19819615 | None:intergenic | 20.0% |
| !! | ATAATATTTGACATACTTGT+AGG | + | chr4.4:19820033-19820052 | MS.gene35116:intron | 20.0% |
| !! | ATGAAAATTTAATGTAGGTA+GGG | - | chr4.4:19819112-19819131 | None:intergenic | 20.0% |
| !! | ATTATTAAGATTTGTGTTGT+TGG | + | chr4.4:19819256-19819275 | MS.gene35116:intron | 20.0% |
| !! | ATTTATAACTCTTTCAGATT+GGG | + | chr4.4:19819347-19819366 | MS.gene35116:CDS | 20.0% |
| !! | GAATGATGAAAATTTAATGT+AGG | - | chr4.4:19819117-19819136 | None:intergenic | 20.0% |
| !! | TAATATTTGACATACTTGTA+GGG | + | chr4.4:19820034-19820053 | MS.gene35116:intron | 20.0% |
| !!! | ATTTCATTGTTTAGTTTTGA+AGG | + | chr4.4:19819900-19819919 | MS.gene35116:intron | 20.0% |
| ! | AACAAAAAAGTGAATTGAGT+TGG | - | chr4.4:19818787-19818806 | None:intergenic | 25.0% |
| ! | AAGTAAATTCTTAAGTACTC+TGG | - | chr4.4:19818944-19818963 | None:intergenic | 25.0% |
| ! | AATATTTGACATACTTGTAG+GGG | + | chr4.4:19820035-19820054 | MS.gene35116:intron | 25.0% |
| ! | ATACCAATTCAATTGATGTT+GGG | + | chr4.4:19819965-19819984 | MS.gene35116:intron | 25.0% |
| ! | ATGATACTTGAAATGATTAG+AGG | - | chr4.4:19819747-19819766 | None:intergenic | 25.0% |
| ! | CAAAAGAAAAATGTAGAAAG+GGG | - | chr4.4:19819595-19819614 | None:intergenic | 25.0% |
| ! | CATTTATAACTCTTTCAGAT+TGG | + | chr4.4:19819346-19819365 | MS.gene35116:CDS | 25.0% |
| ! | GATGAAAATTTAATGTAGGT+AGG | - | chr4.4:19819113-19819132 | None:intergenic | 25.0% |
| ! | GATGAGATAATTAAAATGTC+TGG | - | chr4.4:19818880-19818899 | None:intergenic | 25.0% |
| ! | TAAATGAAACAAGATGCAAT+TGG | - | chr4.4:19819332-19819351 | None:intergenic | 25.0% |
| ! | TATACCAATTCAATTGATGT+TGG | + | chr4.4:19819964-19819983 | MS.gene35116:intron | 25.0% |
| ! | TATCATAAGATTCATAACTG+TGG | + | chr4.4:19819852-19819871 | MS.gene35116:intron | 25.0% |
| ! | TGGTGAAGATTATGATAAAT+GGG | + | chr4.4:19819010-19819029 | MS.gene35116:CDS | 25.0% |
| ! | TGTTGTTACTGAAGAAAATA+AGG | - | chr4.4:19820842-19820861 | None:intergenic | 25.0% |
| ! | TTGGTGAAGATTATGATAAA+TGG | + | chr4.4:19819009-19819028 | MS.gene35116:CDS | 25.0% |
| ! | TTTGAACATGGAAAAGAAAA+CGG | - | chr4.4:19819448-19819467 | None:intergenic | 25.0% |
| !! | ATTTTGCAAAAGTAACACAT+TGG | - | chr4.4:19820618-19820637 | None:intergenic | 25.0% |
| !! | GTATCTAAAACAAACTTCTA+AGG | - | chr4.4:19819943-19819962 | None:intergenic | 25.0% |
| !!! | TTAAGTACTTTGAAATCTTG+AGG | + | chr4.4:19820003-19820022 | MS.gene35116:intron | 25.0% |
| !!! | TTAGTTTTGAAGGAATGAAT+GGG | + | chr4.4:19819910-19819929 | MS.gene35116:intron | 25.0% |
| !!! | TTTAGTTTTGAAGGAATGAA+TGG | + | chr4.4:19819909-19819928 | MS.gene35116:intron | 25.0% |
| AAAACGGTGCAATAAGTATT+CGG | - | chr4.4:19819432-19819451 | None:intergenic | 30.0% | |
| AAATTTAATGTAGGTAGGGT+AGG | - | chr4.4:19819108-19819127 | None:intergenic | 30.0% | |
| AACGATTACTTGTCTTTCTA+AGG | - | chr4.4:19821005-19821024 | None:intergenic | 30.0% | |
| AATGAGTAGTACATAGGAAT+AGG | + | chr4.4:19820295-19820314 | MS.gene35116:intron | 30.0% | |
| AATGGTACTTCTGCAAAATA+AGG | - | chr4.4:19821032-19821051 | None:intergenic | 30.0% | |
| AATGTCACAGTAATAACTAG+TGG | - | chr4.4:19820727-19820746 | None:intergenic | 30.0% | |
| AATTTAATGTAGGTAGGGTA+GGG | - | chr4.4:19819107-19819126 | None:intergenic | 30.0% | |
| ACACATTATTACTTGCATCA+TGG | + | chr4.4:19820505-19820524 | MS.gene35116:CDS | 30.0% | |
| ATGTCATGTTCGAAAAAGAA+AGG | - | chr4.4:19820919-19820938 | None:intergenic | 30.0% | |
| ATGTTCAAACTAAGAGCTAT+TGG | + | chr4.4:19819459-19819478 | MS.gene35116:CDS | 30.0% | |
| CATATTAGTTGATCGAAAAC+TGG | + | chr4.4:19820687-19820706 | MS.gene35116:intron | 30.0% | |
| CTGTTTATCTTTCACCAAAA+AGG | - | chr4.4:19820869-19820888 | None:intergenic | 30.0% | |
| TAATGTGCCAAAAAATCTCA+AGG | + | chr4.4:19820540-19820559 | MS.gene35116:CDS | 30.0% | |
| TATGTCACAGTTATCTTTAG+AGG | - | chr4.4:19819662-19819681 | None:intergenic | 30.0% | |
| TCTACATGTATTAAGACAGA+GGG | - | chr4.4:19819782-19819801 | None:intergenic | 30.0% | |
| TGGTAAGGTAAACTATACAA+TGG | - | chr4.4:19820659-19820678 | None:intergenic | 30.0% | |
| TGTCAATAGTTCTTCTATAG+AGG | - | chr4.4:19820325-19820344 | None:intergenic | 30.0% | |
| TGTTCAAACTAAGAGCTATT+GGG | + | chr4.4:19819460-19819479 | MS.gene35116:CDS | 30.0% | |
| TTCCGTTTCATTTATCCATA+CGG | + | chr4.4:19820750-19820769 | MS.gene35116:intron | 30.0% | |
| TTCTACATGTATTAAGACAG+AGG | - | chr4.4:19819783-19819802 | None:intergenic | 30.0% | |
| TTTCGATCAACTAATATGTC+TGG | - | chr4.4:19820685-19820704 | None:intergenic | 30.0% | |
| TTTCTTTCATAGCAGTATCT+TGG | + | chr4.4:19819067-19819086 | MS.gene35116:CDS | 30.0% | |
| ! | AATAGCTCTTAGTTTGAACA+TGG | - | chr4.4:19819460-19819479 | None:intergenic | 30.0% |
| ! | TGTGTCTTTCTTGTTTGATA+AGG | - | chr4.4:19820161-19820180 | None:intergenic | 30.0% |
| !!! | GCTTATACCTTGAGATTTTT+TGG | - | chr4.4:19820550-19820569 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCACATTACTCTT+TGG | - | chr4.4:19820535-19820554 | None:intergenic | 30.0% |
| AAAAGTAACACATTGGAGCA+AGG | - | chr4.4:19820611-19820630 | None:intergenic | 35.0% | |
| AAGTCTGTTAGTATTAGACG+AGG | + | chr4.4:19820064-19820083 | MS.gene35116:intron | 35.0% | |
| AATTGACAACACTATGTGAC+AGG | + | chr4.4:19818977-19818996 | MS.gene35116:intron | 35.0% | |
| ACAAGTCTTAAGCTATCCAT+AGG | - | chr4.4:19819530-19819549 | None:intergenic | 35.0% | |
| ACATTGCATTATCTTCTCCA+TGG | + | chr4.4:19819488-19819507 | MS.gene35116:CDS | 35.0% | |
| ACCATTTGAATCATCACTAC+AGG | + | chr4.4:19821046-19821065 | MS.gene35116:CDS | 35.0% | |
| ACCCGTATGGATAAATGAAA+CGG | - | chr4.4:19820755-19820774 | None:intergenic | 35.0% | |
| ACGAGGAAGAAAGTAATGTT+AGG | + | chr4.4:19820081-19820100 | MS.gene35116:intron | 35.0% | |
| AGCTCCTACTAAGAATATGA+TGG | + | chr4.4:19820887-19820906 | MS.gene35116:intron | 35.0% | |
| ATACTGCTATGAAAGAAACG+AGG | - | chr4.4:19819065-19819084 | None:intergenic | 35.0% | |
| ATGGGTTCATCAACCTATTA+TGG | + | chr4.4:19819028-19819047 | MS.gene35116:CDS | 35.0% | |
| CAAGTCTTAAGCTATCCATA+GGG | - | chr4.4:19819529-19819548 | None:intergenic | 35.0% | |
| CACTTTCCCTTCTTAAAATG+TGG | + | chr4.4:19820569-19820588 | MS.gene35116:intron | 35.0% | |
| CCATTTGAATCATCACTACA+GGG | + | chr4.4:19821047-19821066 | MS.gene35116:CDS | 35.0% | |
| CGAAACAAGACATGTATTTC+TGG | - | chr4.4:19820216-19820235 | None:intergenic | 35.0% | |
| CGAGGAAGAAAGTAATGTTA+GGG | + | chr4.4:19820082-19820101 | MS.gene35116:intron | 35.0% | |
| GATAAGGCTTATGAGTTGTA+TGG | - | chr4.4:19820145-19820164 | None:intergenic | 35.0% | |
| GATCCCAACATCAATTGAAT+TGG | - | chr4.4:19819971-19819990 | None:intergenic | 35.0% | |
| GCAATTGGAACCCAAATAAT+TGG | - | chr4.4:19819317-19819336 | None:intergenic | 35.0% | |
| GCAGTAAATGAGTAGTACAT+AGG | + | chr4.4:19820289-19820308 | MS.gene35116:intron | 35.0% | |
| GTACTTCTGCAAAATAAGGA+AGG | - | chr4.4:19821028-19821047 | None:intergenic | 35.0% | |
| GTGGGTGATTCCAATTATTT+GGG | + | chr4.4:19819304-19819323 | MS.gene35116:CDS | 35.0% | |
| GTTCAAACTAAGAGCTATTG+GGG | + | chr4.4:19819461-19819480 | MS.gene35116:CDS | 35.0% | |
| TAACTGTGACATAGTTTCTC+TGG | + | chr4.4:19819669-19819688 | MS.gene35116:intron | 35.0% | |
| TACCATGTAGGCTATTAAAG+CGG | - | chr4.4:19819570-19819589 | None:intergenic | 35.0% | |
| TACTGCTATGAAAGAAACGA+GGG | - | chr4.4:19819064-19819083 | None:intergenic | 35.0% | |
| TCCGTTTCATTTATCCATAC+GGG | + | chr4.4:19820751-19820770 | MS.gene35116:intron | 35.0% | |
| TGCACCATCATATTCTTAGT+AGG | - | chr4.4:19820894-19820913 | None:intergenic | 35.0% | |
| TGGGTTCATCAACCTATTAT+GGG | + | chr4.4:19819029-19819048 | MS.gene35116:CDS | 35.0% | |
| TGTATGGTAGCAATACATGA+AGG | - | chr4.4:19820129-19820148 | None:intergenic | 35.0% | |
| ! | AAGATTTGTGTTGTTGGAAC+AGG | + | chr4.4:19819262-19819281 | MS.gene35116:intron | 35.0% |
| ! | AGTAACAACAGTGACCTTTT+TGG | + | chr4.4:19820852-19820871 | MS.gene35116:intron | 35.0% |
| ! | GAATTGTGTTTAGAGGGTTT+TGG | + | chr4.4:19819198-19819217 | MS.gene35116:intron | 35.0% |
| ! | TCAACTAATATGTCTGGCTT+TGG | - | chr4.4:19820679-19820698 | None:intergenic | 35.0% |
| ! | TGTGGTGTTAGTGTAAATGA+TGG | + | chr4.4:19819870-19819889 | MS.gene35116:intron | 35.0% |
| !! | GTATTTCTGGCTAGTTGAAA+CGG | - | chr4.4:19820203-19820222 | None:intergenic | 35.0% |
| !! | TAATATGTCTGGCTTTGGTA+AGG | - | chr4.4:19820674-19820693 | None:intergenic | 35.0% |
| !! | TCTCTGGAATTGTGTTTAGA+GGG | + | chr4.4:19819192-19819211 | MS.gene35116:intron | 35.0% |
| !! | TGTCGTCCACATTTTAAGAA+GGG | - | chr4.4:19820578-19820597 | None:intergenic | 35.0% |
| !! | TTCTTAAGTACTCTGGAGTT+TGG | - | chr4.4:19818937-19818956 | None:intergenic | 35.0% |
| !! | TTGTCGTCCACATTTTAAGA+AGG | - | chr4.4:19820579-19820598 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTACTCGACTCAA+AGG | + | chr4.4:19819164-19819183 | MS.gene35116:intron | 35.0% |
| AATGTTAGGGTCAAATGCAG+AGG | + | chr4.4:19820095-19820114 | MS.gene35116:intron | 40.0% | |
| AGTTGGTTACCTGACAAACA+AGG | - | chr4.4:19818770-19818789 | None:intergenic | 40.0% | |
| CATACGGGTCTCTTAAACTT+GGG | + | chr4.4:19820766-19820785 | MS.gene35116:intron | 40.0% | |
| CCAAAAACCTTATCCCATAG+TGG | - | chr4.4:19821102-19821121 | None:intergenic | 40.0% | |
| CCCTGTAGTGATGATTCAAA+TGG | - | chr4.4:19821050-19821069 | None:intergenic | 40.0% | |
| CTTTCATAGCAGTATCTTGG+AGG | + | chr4.4:19819070-19819089 | MS.gene35116:CDS | 40.0% | |
| GGTGGGTGATTCCAATTATT+TGG | + | chr4.4:19819303-19819322 | MS.gene35116:CDS | 40.0% | |
| GTTGGTTACCTGACAAACAA+GGG | - | chr4.4:19818769-19818788 | None:intergenic | 40.0% | |
| TAATCCTATTCGAGTCGTGT+CGG | + | chr4.4:19818828-19818847 | MS.gene35116:intron | 40.0% | |
| TCATCAACCTATTATGGGCA+AGG | + | chr4.4:19819034-19819053 | MS.gene35116:CDS | 40.0% | |
| TGATGTTGGGATCAGAAGTA+CGG | + | chr4.4:19819978-19819997 | MS.gene35116:intron | 40.0% | |
| TTGGTTACCTGACAAACAAG+GGG | - | chr4.4:19818768-19818787 | None:intergenic | 40.0% | |
| ! | CCACTATGGGATAAGGTTTT+TGG | + | chr4.4:19821099-19821118 | MS.gene35116:CDS | 40.0% |
| ! | GAATAAACCCCTTGTTTGTC+AGG | + | chr4.4:19818758-19818777 | MS.gene35116:CDS | 40.0% |
| ! | TAGAAAGGGGTATACCATGT+AGG | - | chr4.4:19819582-19819601 | None:intergenic | 40.0% |
| ! | TCTGGAGTTTGGTTGAGTAT+CGG | - | chr4.4:19818926-19818945 | None:intergenic | 40.0% |
| ! | TGCTACTCGGCATTTTTGTA+TGG | + | chr4.4:19819399-19819418 | MS.gene35116:CDS | 40.0% |
| !! | GTCTCTGGAATTGTGTTTAG+AGG | + | chr4.4:19819191-19819210 | MS.gene35116:intron | 40.0% |
| !!! | GTGTTTGGAGGCATTTTGTT+GGG | + | chr4.4:19820463-19820482 | MS.gene35116:CDS | 40.0% |
| !!! | TGTGTTTGGAGGCATTTTGT+TGG | + | chr4.4:19820462-19820481 | MS.gene35116:CDS | 40.0% |
| AAAATGCCTCCAAACACAGC+AGG | - | chr4.4:19820460-19820479 | None:intergenic | 45.0% | |
| AACACAGCAGGAGCAATTGA+AGG | - | chr4.4:19820448-19820467 | None:intergenic | 45.0% | |
| AGGGAATACAAGCTTCACTG+AGG | - | chr4.4:19820425-19820444 | None:intergenic | 45.0% | |
| AGTTCCTCCTCCATCAAAAG+TGG | + | chr4.4:19821125-19821144 | MS.gene35116:CDS | 45.0% | |
| CAACCTATTATGGGCAAGGA+AGG | + | chr4.4:19819038-19819057 | MS.gene35116:CDS | 45.0% | |
| CACTTCACCACTATGGGATA+AGG | + | chr4.4:19821092-19821111 | MS.gene35116:CDS | 45.0% | |
| CCAAGTTTAAGAGACCCGTA+TGG | - | chr4.4:19820768-19820787 | None:intergenic | 45.0% | |
| CCATACGGGTCTCTTAAACT+TGG | + | chr4.4:19820765-19820784 | MS.gene35116:intron | 45.0% | |
| GACAACACTATGTGACAGGT+TGG | + | chr4.4:19818981-19819000 | MS.gene35116:intron | 45.0% | |
| TAATGTAGGTAGGGTAGGGT+AGG | - | chr4.4:19819103-19819122 | None:intergenic | 45.0% | |
| TAGGGTCAAATGCAGAGGTT+AGG | + | chr4.4:19820100-19820119 | MS.gene35116:intron | 45.0% | |
| TCAATTGCTCCTGCTGTGTT+TGG | + | chr4.4:19820448-19820467 | MS.gene35116:CDS | 45.0% | |
| TGGCATCACTTCACCACTAT+GGG | + | chr4.4:19821086-19821105 | MS.gene35116:CDS | 45.0% | |
| TTGGCATCACTTCACCACTA+TGG | + | chr4.4:19821085-19821104 | MS.gene35116:CDS | 45.0% | |
| ! | AGCCGCTTTAATAGCCTACA+TGG | + | chr4.4:19819565-19819584 | MS.gene35116:CDS | 45.0% |
| ! | AGCTATCCATAGGGTGCTTA+TGG | - | chr4.4:19819520-19819539 | None:intergenic | 45.0% |
| ! | TATCCATAGGGTGCTTATGG+TGG | - | chr4.4:19819517-19819536 | None:intergenic | 45.0% |
| !! | AGACTTGTTTTTCCACCAGC+TGG | + | chr4.4:19819542-19819561 | MS.gene35116:CDS | 45.0% |
| !! | ATGTGACAGGTTGGTCATCT+TGG | + | chr4.4:19818990-19819009 | MS.gene35116:intron | 45.0% |
| !! | CGACTCAAAGGATTAGTCTC+TGG | + | chr4.4:19819176-19819195 | MS.gene35116:intron | 45.0% |
| !! | CGTTTGGCATCCACTTTTGA+TGG | - | chr4.4:19821138-19821157 | None:intergenic | 45.0% |
| !! | TTGGCATCCACTTTTGATGG+AGG | - | chr4.4:19821135-19821154 | None:intergenic | 45.0% |
| AAAAGAGGGAGGTGAGGAAC+AGG | - | chr4.4:19819377-19819396 | None:intergenic | 50.0% | |
| AAAGAGGGAGGTGAGGAACA+GGG | - | chr4.4:19819376-19819395 | None:intergenic | 50.0% | |
| ACAGCAGGAGCAATTGAAGG+AGG | - | chr4.4:19820445-19820464 | None:intergenic | 50.0% | |
| ATGCCGAGTAGCACGAAAAG+AGG | - | chr4.4:19819392-19819411 | None:intergenic | 50.0% | |
| ATTGCTCCTGCTGTGTTTGG+AGG | + | chr4.4:19820451-19820470 | MS.gene35116:CDS | 50.0% | |
| CAGCAGGAGCAATTGAAGGA+GGG | - | chr4.4:19820444-19820463 | None:intergenic | 50.0% | |
| GTGAAGTGATGCCAAAGCCA+AGG | - | chr4.4:19821080-19821099 | None:intergenic | 50.0% | |
| TAGGTAGGGTAGGGTAGGAT+AGG | - | chr4.4:19819098-19819117 | None:intergenic | 50.0% | |
| TGCCGAGTAGCACGAAAAGA+GGG | - | chr4.4:19819391-19819410 | None:intergenic | 50.0% | |
| TTGCCACCATAAGCACCCTA+TGG | + | chr4.4:19819511-19819530 | MS.gene35116:CDS | 50.0% | |
| TTGTCTGCAACGTCCAGATC+TGG | + | chr4.4:19820398-19820417 | MS.gene35116:intron | 50.0% | |
| TTTCACGCGAACTGCTTGGT+GGG | + | chr4.4:19819286-19819305 | MS.gene35116:CDS | 50.0% | |
| ! | AGGTTTTCACGCGAACTGCT+TGG | + | chr4.4:19819282-19819301 | MS.gene35116:intron | 50.0% |
| ! | TTTTCACGCGAACTGCTTGG+TGG | + | chr4.4:19819285-19819304 | MS.gene35116:CDS | 50.0% |
| !! | CTCCCTCTTTTCGTGCTACT+CGG | + | chr4.4:19819386-19819405 | MS.gene35116:CDS | 50.0% |
| !! | GCATCCACTTTTGATGGAGG+AGG | - | chr4.4:19821132-19821151 | None:intergenic | 50.0% |
| AGCACGAAAAGAGGGAGGTG+AGG | - | chr4.4:19819383-19819402 | None:intergenic | 55.0% | |
| ATTAAAGCGGCTCCAGCTGG+TGG | - | chr4.4:19819557-19819576 | None:intergenic | 55.0% | |
| CGAGTAGCACGAAAAGAGGG+AGG | - | chr4.4:19819388-19819407 | None:intergenic | 55.0% | |
| GCTATTAAAGCGGCTCCAGC+TGG | - | chr4.4:19819560-19819579 | None:intergenic | 55.0% | |
| GCTTCACTGAGGACCAGATC+TGG | - | chr4.4:19820414-19820433 | None:intergenic | 55.0% | |
| GGGCCTTCCTTGCCCATAAT+AGG | - | chr4.4:19819044-19819063 | None:intergenic | 55.0% | |
| GGTGCTTATGGTGGCAACCA+TGG | - | chr4.4:19819508-19819527 | None:intergenic | 55.0% | |
| GTGTCCGACACGACTCGAAT+AGG | - | chr4.4:19818835-19818854 | None:intergenic | 55.0% | |
| TGATGCCAAAGCCAAGGCTC+TGG | - | chr4.4:19821074-19821093 | None:intergenic | 55.0% | |
| AGGGTCCAGAGCCTTGGCTT+TGG | + | chr4.4:19821066-19821085 | MS.gene35116:CDS | 60.0% | |
| CACTACAGGGTCCAGAGCCT+TGG | + | chr4.4:19821060-19821079 | MS.gene35116:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19818729 | 19821164 | 19818729 | ID=MS.gene35116 |
| chr4.4 | mRNA | 19818729 | 19821164 | 19818729 | ID=MS.gene35116.t1;Parent=MS.gene35116 |
| chr4.4 | exon | 19818729 | 19818779 | 19818729 | ID=MS.gene35116.t1.exon1;Parent=MS.gene35116.t1 |
| chr4.4 | CDS | 19818729 | 19818779 | 19818729 | ID=cds.MS.gene35116.t1;Parent=MS.gene35116.t1 |
| chr4.4 | exon | 19818999 | 19819091 | 19818999 | ID=MS.gene35116.t1.exon2;Parent=MS.gene35116.t1 |
| chr4.4 | CDS | 19818999 | 19819091 | 19818999 | ID=cds.MS.gene35116.t1;Parent=MS.gene35116.t1 |
| chr4.4 | exon | 19819284 | 19819586 | 19819284 | ID=MS.gene35116.t1.exon3;Parent=MS.gene35116.t1 |
| chr4.4 | CDS | 19819284 | 19819586 | 19819284 | ID=cds.MS.gene35116.t1;Parent=MS.gene35116.t1 |
| chr4.4 | exon | 19820415 | 19820561 | 19820415 | ID=MS.gene35116.t1.exon4;Parent=MS.gene35116.t1 |
| chr4.4 | CDS | 19820415 | 19820561 | 19820415 | ID=cds.MS.gene35116.t1;Parent=MS.gene35116.t1 |
| chr4.4 | exon | 19821042 | 19821164 | 19821042 | ID=MS.gene35116.t1.exon5;Parent=MS.gene35116.t1 |
| chr4.4 | CDS | 19821042 | 19821164 | 19821042 | ID=cds.MS.gene35116.t1;Parent=MS.gene35116.t1 |
| Gene Sequence |
| Protein sequence |
