Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35227.t1 | RHN42290.1 | 99.3 | 149 | 1 | 0 | 77 | 225 | 152 | 300 | 6.00E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35227.t1 | F4IP06 | 75.3 | 150 | 36 | 1 | 77 | 225 | 151 | 300 | 3.3e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35227.t1 | A0A396GMM6 | 99.3 | 149 | 1 | 0 | 77 | 225 | 152 | 300 | 4.3e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057234 | MS.gene35227 | 0.803555 | 3.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35227.t1 | AT2G36740 | 62.069 | 232 | 79 | 3 | 1 | 225 | 71 | 300 | 2.89e-82 | 248 |
| MS.gene35227.t1 | AT2G36740 | 62.069 | 232 | 79 | 3 | 1 | 225 | 71 | 300 | 5.61e-82 | 249 |
Find 42 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTATCATCAATTT+TGG | 0.077559 | 4.4:+18443326 | None:intergenic |
| GAAGAAAATCTTATCTAATT+TGG | 0.115613 | 4.4:-18443358 | MS.gene35227:CDS |
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4.4:-18442355 | MS.gene35227:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4.4:+18442538 | None:intergenic |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4.4:-18442288 | MS.gene35227:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4.4:-18440782 | MS.gene35227:CDS |
| GGCTGTTCTTCATCGGGTTC+AGG | 0.307025 | 4.4:+18443462 | None:intergenic |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4.4:+18443230 | None:intergenic |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4.4:+18440788 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4.4:-18442146 | MS.gene35227:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4.4:+18440573 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4.4:+18443167 | None:intergenic |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4.4:-18442258 | MS.gene35227:intron |
| AAGAAGCGATTGGTATATCC+TGG | 0.422746 | 4.4:-18443411 | MS.gene35227:CDS |
| CTTCCTAATCATTACCTCCT+TGG | 0.455438 | 4.4:+18443257 | None:intergenic |
| TTAGCCAATGTCGCCTTCCC+AGG | 0.459198 | 4.4:+18443393 | None:intergenic |
| CCTCCTTGGCATCATCGTCC+TGG | 0.471257 | 4.4:+18443271 | None:intergenic |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4.4:-18442147 | MS.gene35227:CDS |
| ATGCCAAGGAGGTAATGATT+AGG | 0.476554 | 4.4:-18443260 | MS.gene35227:CDS |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4.4:+18443208 | None:intergenic |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4.4:+18440779 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4.4:+18440755 | None:intergenic |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4.4:+18443221 | None:intergenic |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4.4:-18440585 | MS.gene35227:CDS |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4.4:-18442362 | MS.gene35227:intron |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4.4:+18443191 | None:intergenic |
| ATATCCTGGGAAGGCGACAT+TGG | 0.555043 | 4.4:-18443397 | MS.gene35227:CDS |
| AAAATTGATGATAATGATGA+CGG | 0.559093 | 4.4:-18443324 | MS.gene35227:CDS |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4.4:-18442541 | MS.gene35227:CDS |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4.4:-18443181 | MS.gene35227:intron |
| AGAAGCGATTGGTATATCCT+GGG | 0.596937 | 4.4:-18443410 | MS.gene35227:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4.4:-18442145 | MS.gene35227:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4.4:+18442101 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4.4:-18442515 | MS.gene35227:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4.4:+18442264 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4.4:+18440580 | None:intergenic |
| CAACCAGGACGATGATGCCA+AGG | 0.612779 | 4.4:-18443274 | MS.gene35227:CDS |
| AAACAACAAGAACAACAACC+AGG | 0.612812 | 4.4:-18443289 | MS.gene35227:CDS |
| GCGATTGGTATATCCTGGGA+AGG | 0.627485 | 4.4:-18443406 | MS.gene35227:CDS |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4.4:-18442536 | MS.gene35227:CDS |
| CCAGGACGATGATGCCAAGG+AGG | 0.685706 | 4.4:-18443271 | MS.gene35227:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4.4:-18440584 | MS.gene35227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTCTTTTTTTTTT+TGG | - | chr4.4:18441439-18441458 | MS.gene35227:intron | 10.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | - | chr4.4:18442863-18442882 | MS.gene35227:intron | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | + | chr4.4:18442272-18442291 | None:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | - | chr4.4:18442885-18442904 | MS.gene35227:intron | 15.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | + | chr4.4:18441932-18441951 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | + | chr4.4:18441357-18441376 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | + | chr4.4:18441931-18441950 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | - | chr4.4:18442270-18442289 | MS.gene35227:CDS | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | + | chr4.4:18441152-18441171 | None:intergenic | 20.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | - | chr4.4:18440647-18440666 | MS.gene35227:intron | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | - | chr4.4:18442834-18442853 | MS.gene35227:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | - | chr4.4:18442276-18442295 | MS.gene35227:CDS | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | - | chr4.4:18442638-18442657 | MS.gene35227:intron | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | + | chr4.4:18441151-18441170 | None:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | - | chr4.4:18440681-18440700 | MS.gene35227:intron | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | - | chr4.4:18442556-18442575 | MS.gene35227:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | + | chr4.4:18442265-18442284 | None:intergenic | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | - | chr4.4:18442557-18442576 | MS.gene35227:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | - | chr4.4:18443466-18443485 | MS.gene35227:CDS | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | - | chr4.4:18442884-18442903 | MS.gene35227:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | + | chr4.4:18442676-18442695 | None:intergenic | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | + | chr4.4:18440681-18440700 | None:intergenic | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | - | chr4.4:18441932-18441951 | MS.gene35227:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | + | chr4.4:18441079-18441098 | None:intergenic | 20.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | - | chr4.4:18442281-18442300 | MS.gene35227:CDS | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | + | chr4.4:18441617-18441636 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | - | chr4.4:18441166-18441185 | MS.gene35227:intron | 25.0% |
| ! | AATGAATAAAAAGAAGCGAT+TGG | - | chr4.4:18440584-18440603 | MS.gene35227:CDS | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | + | chr4.4:18442031-18442050 | None:intergenic | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | - | chr4.4:18441650-18441669 | MS.gene35227:intron | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | + | chr4.4:18441821-18441840 | None:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | - | chr4.4:18441747-18441766 | MS.gene35227:intron | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | - | chr4.4:18441974-18441993 | MS.gene35227:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | - | chr4.4:18442319-18442338 | MS.gene35227:CDS | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | - | chr4.4:18441258-18441277 | MS.gene35227:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | + | chr4.4:18441153-18441172 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | - | chr4.4:18442706-18442725 | MS.gene35227:intron | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | + | chr4.4:18441256-18441275 | None:intergenic | 25.0% |
| ! | TATAGACAAAGGAAATATTC+CGG | + | chr4.4:18443357-18443376 | None:intergenic | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | + | chr4.4:18440856-18440875 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | - | chr4.4:18440858-18440877 | MS.gene35227:intron | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | + | chr4.4:18440682-18440701 | None:intergenic | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | + | chr4.4:18442553-18442572 | None:intergenic | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | - | chr4.4:18440859-18440878 | MS.gene35227:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | - | chr4.4:18441618-18441637 | MS.gene35227:intron | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | + | chr4.4:18442554-18442573 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | - | chr4.4:18441831-18441850 | MS.gene35227:intron | 25.0% |
| AAAAAAAGAAGTAGTTCAGC+CGG | - | chr4.4:18443335-18443354 | MS.gene35227:CDS | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | + | chr4.4:18442704-18442723 | None:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | - | chr4.4:18441751-18441770 | MS.gene35227:intron | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | - | chr4.4:18442323-18442342 | MS.gene35227:CDS | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | - | chr4.4:18442030-18442049 | MS.gene35227:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | + | chr4.4:18442032-18442051 | None:intergenic | 30.0% | |
| CTATCTTGAAAAACAGCTTA+TGG | + | chr4.4:18441020-18441039 | None:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | - | chr4.4:18443381-18443400 | MS.gene35227:CDS | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | + | chr4.4:18441587-18441606 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | + | chr4.4:18443389-18443408 | None:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | + | chr4.4:18441989-18442008 | None:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | - | chr4.4:18441539-18441558 | MS.gene35227:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | - | chr4.4:18442705-18442724 | MS.gene35227:intron | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | - | chr4.4:18441717-18441736 | MS.gene35227:intron | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | + | chr4.4:18443308-18443327 | None:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | - | chr4.4:18442096-18442115 | MS.gene35227:intron | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | + | chr4.4:18443268-18443287 | None:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | - | chr4.4:18442189-18442208 | MS.gene35227:intron | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | + | chr4.4:18441422-18441441 | None:intergenic | 30.0% |
| ! | ATTCTTTCATCATCGTTTTG+TGG | + | chr4.4:18440567-18440586 | None:intergenic | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | - | chr4.4:18441859-18441878 | MS.gene35227:intron | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | - | chr4.4:18442213-18442232 | MS.gene35227:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | - | chr4.4:18441860-18441879 | MS.gene35227:intron | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | + | chr4.4:18443381-18443400 | None:intergenic | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | + | chr4.4:18440678-18440697 | None:intergenic | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | - | chr4.4:18441858-18441877 | MS.gene35227:intron | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | - | chr4.4:18443058-18443077 | MS.gene35227:intron | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | - | chr4.4:18442991-18443010 | MS.gene35227:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | - | chr4.4:18441789-18441808 | MS.gene35227:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | - | chr4.4:18442992-18443011 | MS.gene35227:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | - | chr4.4:18442223-18442242 | MS.gene35227:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | - | chr4.4:18441845-18441864 | MS.gene35227:intron | 30.0% |
| AAACAACAAGAACAACAACC+AGG | - | chr4.4:18440716-18440735 | MS.gene35227:intron | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | + | chr4.4:18443229-18443248 | None:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | - | chr4.4:18442899-18442918 | MS.gene35227:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | - | chr4.4:18442110-18442129 | MS.gene35227:CDS | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | + | chr4.4:18441787-18441806 | None:intergenic | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | - | chr4.4:18441034-18441053 | MS.gene35227:intron | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | - | chr4.4:18442967-18442986 | MS.gene35227:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | - | chr4.4:18442720-18442739 | MS.gene35227:intron | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | - | chr4.4:18441780-18441799 | MS.gene35227:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | - | chr4.4:18441643-18441662 | MS.gene35227:intron | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | - | chr4.4:18441172-18441191 | MS.gene35227:intron | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | + | chr4.4:18440841-18440860 | None:intergenic | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | - | chr4.4:18442752-18442771 | MS.gene35227:intron | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | - | chr4.4:18442577-18442596 | MS.gene35227:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | - | chr4.4:18442997-18443016 | MS.gene35227:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | - | chr4.4:18441200-18441219 | MS.gene35227:intron | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | - | chr4.4:18442998-18443017 | MS.gene35227:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | + | chr4.4:18443080-18443099 | None:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | - | chr4.4:18442719-18442738 | MS.gene35227:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr4.4:18442448-18442467 | None:intergenic | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | - | chr4.4:18442759-18442778 | MS.gene35227:intron | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | - | chr4.4:18440940-18440959 | MS.gene35227:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | + | chr4.4:18441744-18441763 | None:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | - | chr4.4:18442284-18442303 | MS.gene35227:CDS | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | + | chr4.4:18442965-18442984 | None:intergenic | 35.0% | |
| TTCCAAACAACACCTGATTA+TGG | - | chr4.4:18441407-18441426 | MS.gene35227:intron | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | - | chr4.4:18443298-18443317 | MS.gene35227:CDS | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | + | chr4.4:18443450-18443469 | None:intergenic | 35.0% |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | - | chr4.4:18441365-18441384 | MS.gene35227:intron | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | - | chr4.4:18442156-18442175 | MS.gene35227:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | - | chr4.4:18442222-18442241 | MS.gene35227:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | - | chr4.4:18442447-18442466 | MS.gene35227:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | - | chr4.4:18442999-18443018 | MS.gene35227:intron | 40.0% | |
| AAGAAGCGATTGGTATATCC+TGG | - | chr4.4:18440594-18440613 | MS.gene35227:intron | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | - | chr4.4:18443400-18443419 | MS.gene35227:CDS | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | - | chr4.4:18442356-18442375 | MS.gene35227:CDS | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | + | chr4.4:18442242-18442261 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | + | chr4.4:18442454-18442473 | None:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | + | chr4.4:18443079-18443098 | None:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | - | chr4.4:18442957-18442976 | MS.gene35227:intron | 40.0% | |
| AGAAGCGATTGGTATATCCT+GGG | - | chr4.4:18440595-18440614 | MS.gene35227:intron | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | - | chr4.4:18441469-18441488 | MS.gene35227:intron | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | + | chr4.4:18443220-18443239 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | + | chr4.4:18441220-18441239 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | - | chr4.4:18442768-18442787 | MS.gene35227:intron | 40.0% | |
| ATGCCAAGGAGGTAATGATT+AGG | - | chr4.4:18440745-18440764 | MS.gene35227:intron | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | - | chr4.4:18442610-18442629 | MS.gene35227:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | - | chr4.4:18443223-18443242 | MS.gene35227:CDS | 40.0% | |
| CAGCCAGTAATAAGGAAGAA+AGG | - | chr4.4:18441464-18441483 | MS.gene35227:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | + | chr4.4:18442453-18442472 | None:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | + | chr4.4:18443257-18443276 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr4.4:18442422-18442441 | None:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | + | chr4.4:18442627-18442646 | None:intergenic | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | + | chr4.4:18442617-18442636 | None:intergenic | 40.0% | |
| CTTCCTAATCATTACCTCCT+TGG | + | chr4.4:18440751-18440770 | None:intergenic | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | - | chr4.4:18442348-18442367 | MS.gene35227:CDS | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | + | chr4.4:18442356-18442375 | None:intergenic | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | + | chr4.4:18440973-18440992 | None:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | - | chr4.4:18441490-18441509 | MS.gene35227:intron | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | - | chr4.4:18442996-18443015 | MS.gene35227:intron | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | - | chr4.4:18440939-18440958 | MS.gene35227:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr4.4:18442498-18442517 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | + | chr4.4:18441221-18441240 | None:intergenic | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | + | chr4.4:18441470-18441489 | None:intergenic | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | - | chr4.4:18442776-18442795 | MS.gene35227:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | - | chr4.4:18442288-18442307 | MS.gene35227:CDS | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | - | chr4.4:18442775-18442794 | MS.gene35227:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | - | chr4.4:18443065-18443084 | MS.gene35227:intron | 40.0% |
| ! | AGAGTACCCACAACTAAGTA+AGG | - | chr4.4:18442347-18442366 | MS.gene35227:CDS | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | + | chr4.4:18442955-18442974 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | + | chr4.4:18440553-18440572 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | + | chr4.4:18442958-18442977 | None:intergenic | 40.0% |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | + | chr4.4:18440552-18440571 | None:intergenic | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | - | chr4.4:18441518-18441537 | MS.gene35227:intron | 40.0% |
| !! | GACCATAATCAGGTGTTGTT+TGG | + | chr4.4:18441412-18441431 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | - | chr4.4:18441456-18441475 | MS.gene35227:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | + | chr4.4:18443253-18443272 | None:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | - | chr4.4:18442121-18442140 | MS.gene35227:CDS | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | - | chr4.4:18442114-18442133 | MS.gene35227:CDS | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | - | chr4.4:18440824-18440843 | MS.gene35227:intron | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | - | chr4.4:18442615-18442634 | MS.gene35227:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | + | chr4.4:18442618-18442637 | None:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | + | chr4.4:18442141-18442160 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | + | chr4.4:18440800-18440819 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | chr4.4:18442423-18442442 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr4.4:18442426-18442445 | None:intergenic | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | + | chr4.4:18442357-18442376 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | + | chr4.4:18443368-18443387 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr4.4:18442492-18442511 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr4.4:18442491-18442510 | None:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | + | chr4.4:18440787-18440806 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr4.4:18443140-18443159 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | + | chr4.4:18442545-18442564 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.4:18443141-18443160 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr4.4:18442458-18442477 | MS.gene35227:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | + | chr4.4:18442543-18442562 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | + | chr4.4:18442544-18442563 | None:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | - | chr4.4:18442142-18442161 | MS.gene35227:CDS | 45.0% |
| ACTGAAGCTTCCGCATATGC+AGG | - | chr4.4:18442382-18442401 | MS.gene35227:intron | 50.0% | |
| ATATCCTGGGAAGGCGACAT+TGG | - | chr4.4:18440608-18440627 | MS.gene35227:intron | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | - | chr4.4:18442127-18442146 | MS.gene35227:CDS | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr4.4:18442514-18442533 | MS.gene35227:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.4:18443139-18443158 | MS.gene35227:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | - | chr4.4:18442975-18442994 | MS.gene35227:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | + | chr4.4:18441907-18441926 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | + | chr4.4:18442129-18442148 | None:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | - | chr4.4:18442383-18442402 | MS.gene35227:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr4.4:18443136-18443155 | None:intergenic | 50.0% | |
| GCGATTGGTATATCCTGGGA+AGG | - | chr4.4:18440599-18440618 | MS.gene35227:intron | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | - | chr4.4:18443421-18443440 | MS.gene35227:CDS | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | - | chr4.4:18442803-18442822 | MS.gene35227:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | - | chr4.4:18443128-18443147 | MS.gene35227:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | - | chr4.4:18443127-18443146 | MS.gene35227:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | - | chr4.4:18443420-18443439 | MS.gene35227:CDS | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.4:18443142-18443161 | None:intergenic | 50.0% |
| ! | GCGAACAATGACGGAAGTTC+TGG | + | chr4.4:18440778-18440797 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | + | chr4.4:18440817-18440836 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | - | chr4.4:18441671-18441690 | MS.gene35227:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr4.4:18442479-18442498 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | + | chr4.4:18442378-18442397 | None:intergenic | 55.0% | |
| CAACCAGGACGATGATGCCA+AGG | - | chr4.4:18440731-18440750 | MS.gene35227:intron | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | - | chr4.4:18442395-18442414 | MS.gene35227:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr4.4:18443134-18443153 | MS.gene35227:intron | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | + | chr4.4:18442395-18442414 | None:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | - | chr4.4:18442798-18442817 | MS.gene35227:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | - | chr4.4:18442785-18442804 | MS.gene35227:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | + | chr4.4:18443428-18443447 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | - | chr4.4:18442394-18442413 | MS.gene35227:intron | 55.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | + | chr4.4:18440546-18440565 | None:intergenic | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | - | chr4.4:18442784-18442803 | MS.gene35227:intron | 55.0% | |
| TTAGCCAATGTCGCCTTCCC+AGG | + | chr4.4:18440615-18440634 | None:intergenic | 55.0% | |
| !! | TGGGTACTGAGGGGTAACCT+TGG | + | chr4.4:18442534-18442553 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr4.4:18442525-18442544 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | - | chr4.4:18442408-18442427 | MS.gene35227:intron | 60.0% | |
| CCAGGACGATGATGCCAAGG+AGG | - | chr4.4:18440734-18440753 | MS.gene35227:intron | 60.0% | |
| CCTCCTTGGCATCATCGTCC+TGG | + | chr4.4:18440737-18440756 | None:intergenic | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | - | chr4.4:18442393-18442412 | MS.gene35227:intron | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | - | chr4.4:18442389-18442408 | MS.gene35227:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | + | chr4.4:18443435-18443454 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | + | chr4.4:18442410-18442429 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18440540 | 18443487 | 18440540 | ID=MS.gene35227 |
| chr4.4 | mRNA | 18440540 | 18443487 | 18440540 | ID=MS.gene35227.t1;Parent=MS.gene35227 |
| chr4.4 | exon | 18443182 | 18443487 | 18443182 | ID=MS.gene35227.t1.exon1;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18443182 | 18443487 | 18443182 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| chr4.4 | exon | 18442488 | 18442560 | 18442488 | ID=MS.gene35227.t1.exon2;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18442488 | 18442560 | 18442488 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| chr4.4 | exon | 18442259 | 18442378 | 18442259 | ID=MS.gene35227.t1.exon3;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18442259 | 18442378 | 18442259 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| chr4.4 | exon | 18442106 | 18442174 | 18442106 | ID=MS.gene35227.t1.exon4;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18442106 | 18442174 | 18442106 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| chr4.4 | exon | 18440770 | 18440812 | 18440770 | ID=MS.gene35227.t1.exon5;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18440770 | 18440812 | 18440770 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| chr4.4 | exon | 18440540 | 18440605 | 18440540 | ID=MS.gene35227.t1.exon6;Parent=MS.gene35227.t1 |
| chr4.4 | CDS | 18440540 | 18440605 | 18440540 | ID=cds.MS.gene35227.t1;Parent=MS.gene35227.t1 |
| Gene Sequence |
| Protein sequence |
