Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35604.t1 | XP_013460874.1 | 98.1 | 211 | 4 | 0 | 2 | 212 | 132 | 342 | 2.30E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35604.t1 | Q8LBV4 | 76.8 | 211 | 47 | 2 | 2 | 211 | 145 | 354 | 6.0e-93 | 341.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35604.t1 | A0A072V0M9 | 98.1 | 211 | 4 | 0 | 2 | 212 | 132 | 342 | 1.6e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058700 | MS.gene35604 | 0.804364 | 2.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35604.t1 | MTR_3g074250 | 98.104 | 211 | 4 | 0 | 2 | 212 | 132 | 342 | 3.73e-154 | 431 |
| MS.gene35604.t1 | MTR_2g450530 | 56.398 | 211 | 85 | 3 | 2 | 211 | 73 | 277 | 1.67e-81 | 244 |
| MS.gene35604.t1 | MTR_2g450530 | 56.398 | 211 | 85 | 3 | 2 | 211 | 138 | 342 | 1.41e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35604.t1 | AT1G78140 | 76.777 | 211 | 47 | 2 | 2 | 211 | 145 | 354 | 2.77e-120 | 345 |
| MS.gene35604.t1 | AT2G41040 | 53.271 | 214 | 88 | 4 | 2 | 211 | 147 | 352 | 5.41e-74 | 228 |
Find 44 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAATATAAATCAAGTATC+AGG | 0.201212 | 3.3:-64072180 | MS.gene35604:CDS |
| TAGAAATTTGCGTACTCTTT+TGG | 0.203851 | 3.3:+64073390 | None:intergenic |
| AGGAAACTCAAACCTTATTT+AGG | 0.248027 | 3.3:+64072045 | None:intergenic |
| TCTGCTGCAAAGCCTAAATA+AGG | 0.264498 | 3.3:-64072057 | None:intergenic |
| GGTTTCCTAAAACCAGTATT+AGG | 0.339433 | 3.3:-64073561 | MS.gene35604:CDS |
| ATGATATTTCCACCTAATAC+TGG | 0.344800 | 3.3:+64073549 | None:intergenic |
| GGATTTAAATGCATCAGAAA+TGG | 0.385951 | 3.3:-64072096 | MS.gene35604:CDS |
| TGTTGCAACCACCTACATAC+TGG | 0.395943 | 3.3:-64072760 | MS.gene35604:CDS |
| ATTAGATTAACCTCTTTCTC+AGG | 0.446725 | 3.3:+64074252 | None:intergenic |
| GATTTAAATGCATCAGAAAT+GGG | 0.447853 | 3.3:-64072095 | MS.gene35604:CDS |
| GCTGCAGTTTGAACAGATGA+AGG | 0.460531 | 3.3:-64073583 | MS.gene35604:intron |
| ATGTTATGAATTTGTTCAGC+AGG | 0.472552 | 3.3:-64073424 | MS.gene35604:CDS |
| AAGTTCACGTTCAGAGAGAA+AGG | 0.474732 | 3.3:+64072149 | None:intergenic |
| ATCGATGCTAGTTGTGGAAG+TGG | 0.499787 | 3.3:-64073528 | MS.gene35604:CDS |
| TCTCTGCAAGGCATGTGGGC+TGG | 0.503889 | 3.3:-64072121 | MS.gene35604:CDS |
| CAGGAGCAGCTCTTCACTGT+TGG | 0.508797 | 3.3:-64073181 | MS.gene35604:CDS |
| TTAACCTCTTTCTCAGGACC+TGG | 0.515325 | 3.3:+64074258 | None:intergenic |
| GCAGCAGAAATCATCACAAA+AGG | 0.517241 | 3.3:+64072072 | None:intergenic |
| TCCTGCATGCACAGCATCGA+TGG | 0.526627 | 3.3:+64073199 | None:intergenic |
| TGCAAGGCATGTGGGCTGGT+CGG | 0.527229 | 3.3:-64072117 | MS.gene35604:CDS |
| TCCATCGATGCTGTGCATGC+AGG | 0.527473 | 3.3:-64073200 | MS.gene35604:CDS |
| CATTTCTCTATGAGAGGGGC+TGG | 0.529730 | 3.3:-64074311 | MS.gene35604:CDS |
| GAAGCTCTCTGCAAGGCATG+TGG | 0.539520 | 3.3:-64072126 | MS.gene35604:CDS |
| TGGTATCATTTCTCTATGAG+AGG | 0.543088 | 3.3:-64074317 | MS.gene35604:CDS |
| AGAATATAAATCAAGTATCA+GGG | 0.544688 | 3.3:-64072179 | MS.gene35604:CDS |
| GCAACCACCTACATACTGGA+TGG | 0.544849 | 3.3:-64072756 | MS.gene35604:CDS |
| CTGCAGTTTGAACAGATGAA+GGG | 0.547037 | 3.3:-64073582 | MS.gene35604:intron |
| AAGCTCTCTGCAAGGCATGT+GGG | 0.549488 | 3.3:-64072125 | MS.gene35604:CDS |
| GGTATCATTTCTCTATGAGA+GGG | 0.554274 | 3.3:-64074316 | MS.gene35604:CDS |
| GTTGCAACAAAGACACCGCC+AGG | 0.554958 | 3.3:+64072774 | None:intergenic |
| TCGATGGAACTTGAAACAAA+AGG | 0.560574 | 3.3:+64073215 | None:intergenic |
| AAAACCACCCCATACAGAAA+AGG | 0.561587 | 3.3:+64074281 | None:intergenic |
| TTCCTAAAACCAGTATTAGG+TGG | 0.565845 | 3.3:-64073558 | MS.gene35604:CDS |
| AAAAGGCCCATCCAGTATGT+AGG | 0.581231 | 3.3:+64072749 | None:intergenic |
| AATATCATCGATGCTAGTTG+TGG | 0.584800 | 3.3:-64073534 | MS.gene35604:CDS |
| CTTACAGCTGCTGATGGTGA+AGG | 0.590848 | 3.3:+64073158 | None:intergenic |
| CAACCACCTACATACTGGAT+GGG | 0.592989 | 3.3:-64072755 | MS.gene35604:CDS |
| TATTCACTTACAGCTGCTGA+TGG | 0.608738 | 3.3:+64073152 | None:intergenic |
| TGAACTTGAAGCTCTCTGCA+AGG | 0.624469 | 3.3:-64072133 | MS.gene35604:CDS |
| GTATCATTTCTCTATGAGAG+GGG | 0.632193 | 3.3:-64074315 | MS.gene35604:CDS |
| AGGCCCATCCAGTATGTAGG+TGG | 0.662241 | 3.3:+64072752 | None:intergenic |
| TTGTTGAATCAGGATGCCGC+TGG | 0.670749 | 3.3:-64074337 | None:intergenic |
| TCATAGAGAAATGATACCAG+CGG | 0.679287 | 3.3:+64074321 | None:intergenic |
| ACTACTCAGAGAACATGTTG+AGG | 0.710121 | 3.3:-64073449 | MS.gene35604:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTCTTTCAATA+TGG | - | chr3.3:64072195-64072214 | MS.gene35604:intron | 10.0% |
| !! | ATATTAAAATTATCTTGTTG+AGG | - | chr3.3:64072704-64072723 | MS.gene35604:intron | 15.0% |
| !! | ATTGAAAGAAAAAAAAAATG+TGG | + | chr3.3:64072194-64072213 | None:intergenic | 15.0% |
| !! | TTGAAAGAAAAAAAAAATGT+GGG | + | chr3.3:64072193-64072212 | None:intergenic | 15.0% |
| !!! | TTTGAAATATAAACTACTTA+TGG | - | chr3.3:64073426-64073445 | MS.gene35604:CDS | 15.0% |
| !! | AATTACTTCCATTAAAACAT+CGG | + | chr3.3:64073055-64073074 | None:intergenic | 20.0% |
| !! | AGAATATAAATCAAGTATCA+GGG | - | chr3.3:64074204-64074223 | MS.gene35604:intron | 20.0% |
| !! | TAGAATATAAATCAAGTATC+AGG | - | chr3.3:64074203-64074222 | MS.gene35604:intron | 20.0% |
| !!! | ATTCTTGGTATTTGTTATAT+AGG | - | chr3.3:64072299-64072318 | MS.gene35604:intron | 20.0% |
| !!! | GAATATCTTTTGAAATGATT+TGG | - | chr3.3:64073307-64073326 | MS.gene35604:intron | 20.0% |
| !!! | TTATATCAAGTTTTGAATAG+TGG | - | chr3.3:64074162-64074181 | MS.gene35604:intron | 20.0% |
| !!! | TTCTAAAATGACAAACAAAT+TGG | + | chr3.3:64074188-64074207 | None:intergenic | 20.0% |
| ! | AAATGGAAATTATAGAGGAA+AGG | + | chr3.3:64073543-64073562 | None:intergenic | 25.0% |
| ! | AATAATCAAGACAAACTGAA+AGG | + | chr3.3:64072554-64072573 | None:intergenic | 25.0% |
| ! | AATATCCCTACTGAAAAAAA+GGG | + | chr3.3:64072259-64072278 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTGATTATTGTT+TGG | - | chr3.3:64072557-64072576 | MS.gene35604:intron | 25.0% |
| ! | ATTACTTCCATTAAAACATC+GGG | + | chr3.3:64073054-64073073 | None:intergenic | 25.0% |
| ! | CTATATGTCAAACATGAAAA+GGG | - | chr3.3:64074103-64074122 | MS.gene35604:intron | 25.0% |
| ! | GATTTAAATGCATCAGAAAT+GGG | - | chr3.3:64074288-64074307 | MS.gene35604:CDS | 25.0% |
| ! | GTAACTTATCCAAAATGTTA+CGG | + | chr3.3:64073459-64073478 | None:intergenic | 25.0% |
| ! | GTATAACTTTGAATCTGAAT+TGG | + | chr3.3:64074082-64074101 | None:intergenic | 25.0% |
| ! | TAATATCCCTACTGAAAAAA+AGG | + | chr3.3:64072260-64072279 | None:intergenic | 25.0% |
| ! | TATAAAACTTGTGCCATATT+TGG | - | chr3.3:64073691-64073710 | MS.gene35604:intron | 25.0% |
| ! | TCAAGATTATTTGCAAAAAG+TGG | - | chr3.3:64072885-64072904 | MS.gene35604:intron | 25.0% |
| ! | TGGTACAAATAATTTAACCA+TGG | - | chr3.3:64073327-64073346 | MS.gene35604:intron | 25.0% |
| !! | AATATTCTCTTGCATTTTCA+TGG | + | chr3.3:64073855-64073874 | None:intergenic | 25.0% |
| !! | ACAATACTGAATAAACCTTT+TGG | + | chr3.3:64073357-64073376 | None:intergenic | 25.0% |
| !! | ATATTCTCTTGCATTTTCAT+GGG | + | chr3.3:64073854-64073873 | None:intergenic | 25.0% |
| !! | ATTTTCATGGGTATGTAAAA+TGG | + | chr3.3:64073842-64073861 | None:intergenic | 25.0% |
| !! | CAATACTGAATAAACCTTTT+GGG | + | chr3.3:64073356-64073375 | None:intergenic | 25.0% |
| !! | CTTTTCATGTTTGACATATA+GGG | + | chr3.3:64074104-64074123 | None:intergenic | 25.0% |
| !! | TCATAAACATTTCTTTTGCT+AGG | - | chr3.3:64073109-64073128 | MS.gene35604:intron | 25.0% |
| !!! | AAAAAGTGGACTTTTTTCTT+TGG | - | chr3.3:64072899-64072918 | MS.gene35604:intron | 25.0% |
| AAAATTATCTTGTTGAGGCA+TGG | - | chr3.3:64072709-64072728 | MS.gene35604:intron | 30.0% | |
| AAATTATCTTGTTGAGGCAT+GGG | - | chr3.3:64072710-64072729 | MS.gene35604:intron | 30.0% | |
| AACTTAGTGAGTTTATCTAC+TGG | + | chr3.3:64073768-64073787 | None:intergenic | 30.0% | |
| AGGTTTATTCAGTATTGTGT+TGG | - | chr3.3:64073359-64073378 | MS.gene35604:intron | 30.0% | |
| AGTCGTTACAATTCATGAAA+AGG | + | chr3.3:64072757-64072776 | None:intergenic | 30.0% | |
| ATGATATTTCCACCTAATAC+TGG | + | chr3.3:64072837-64072856 | None:intergenic | 30.0% | |
| ATGGCTTCTTATGCATATAT+TGG | - | chr3.3:64072214-64072233 | MS.gene35604:intron | 30.0% | |
| ATTAGATTAACCTCTTTCTC+AGG | + | chr3.3:64072134-64072153 | None:intergenic | 30.0% | |
| CACCAAGTTATTAGACAAAT+GGG | - | chr3.3:64073816-64073835 | MS.gene35604:intron | 30.0% | |
| CATGGAAATGGAAATTATAG+AGG | + | chr3.3:64073548-64073567 | None:intergenic | 30.0% | |
| CCTATATGTCAAACATGAAA+AGG | - | chr3.3:64074102-64074121 | MS.gene35604:intron | 30.0% | |
| GACGCAATGTACTTAAAAAT+GGG | + | chr3.3:64073668-64073687 | None:intergenic | 30.0% | |
| GGATTTAAATGCATCAGAAA+TGG | - | chr3.3:64074287-64074306 | MS.gene35604:CDS | 30.0% | |
| TATTACTTACCAAGATTGTG+AGG | - | chr3.3:64074016-64074035 | MS.gene35604:intron | 30.0% | |
| TCACCAAGTTATTAGACAAA+TGG | - | chr3.3:64073815-64073834 | MS.gene35604:intron | 30.0% | |
| TGAATAGAAGAACATAGACT+TGG | - | chr3.3:64072584-64072603 | MS.gene35604:intron | 30.0% | |
| TGACGCAATGTACTTAAAAA+TGG | + | chr3.3:64073669-64073688 | None:intergenic | 30.0% | |
| TTGTCTTGATTATTGTTTGG+CGG | - | chr3.3:64072560-64072579 | MS.gene35604:intron | 30.0% | |
| ! | ATGTTATGAATTTGTTCAGC+AGG | - | chr3.3:64072959-64072978 | MS.gene35604:intron | 30.0% |
| ! | CCTTTTCATGTTTGACATAT+AGG | + | chr3.3:64074105-64074124 | None:intergenic | 30.0% |
| ! | TAGAAATTTGCGTACTCTTT+TGG | + | chr3.3:64072996-64073015 | None:intergenic | 30.0% |
| ! | TCAATTTAGTTTCTCATCGT+AGG | - | chr3.3:64073905-64073924 | MS.gene35604:intron | 30.0% |
| !! | ATTAACTTGTCCTTCAACTA+AGG | - | chr3.3:64073936-64073955 | MS.gene35604:intron | 30.0% |
| !! | TTAACTTGTCCTTCAACTAA+GGG | - | chr3.3:64073937-64073956 | MS.gene35604:intron | 30.0% |
| !! | TTTTGAACCCGATGTTTTAA+TGG | - | chr3.3:64073044-64073063 | MS.gene35604:intron | 30.0% |
| !!! | ACTTTCCCTTTTTTTCAGTA+GGG | - | chr3.3:64072251-64072270 | MS.gene35604:intron | 30.0% |
| !!! | ATTTTTAAGTACATTGCGTC+AGG | - | chr3.3:64073668-64073687 | MS.gene35604:intron | 30.0% |
| !!! | TACTTTCCCTTTTTTTCAGT+AGG | - | chr3.3:64072250-64072269 | MS.gene35604:intron | 30.0% |
| AAAAATGTGGGTCAAACTAG+AGG | + | chr3.3:64072181-64072200 | None:intergenic | 35.0% | |
| AATATCATCGATGCTAGTTG+TGG | - | chr3.3:64072849-64072868 | MS.gene35604:intron | 35.0% | |
| AGAATCACAGTTCTTCCAAT+TGG | + | chr3.3:64072284-64072303 | None:intergenic | 35.0% | |
| ATTGGAAGAACTGTGATTCT+TGG | - | chr3.3:64072284-64072303 | MS.gene35604:intron | 35.0% | |
| CAGTAGGGATATTATCCAAT+TGG | - | chr3.3:64072266-64072285 | MS.gene35604:intron | 35.0% | |
| GAAGAACATAGACTTGGAAA+TGG | - | chr3.3:64072590-64072609 | MS.gene35604:intron | 35.0% | |
| GGTATCATTTCTCTATGAGA+GGG | - | chr3.3:64072067-64072086 | MS.gene35604:CDS | 35.0% | |
| GGTTTCCTAAAACCAGTATT+AGG | - | chr3.3:64072822-64072841 | MS.gene35604:intron | 35.0% | |
| GTATCATTTCTCTATGAGAG+GGG | - | chr3.3:64072068-64072087 | MS.gene35604:CDS | 35.0% | |
| TATATGAGCTAATCCATAGC+TGG | + | chr3.3:64072492-64072511 | None:intergenic | 35.0% | |
| TCATAGAGAAATGATACCAG+CGG | + | chr3.3:64072065-64072084 | None:intergenic | 35.0% | |
| TCGATGGAACTTGAAACAAA+AGG | + | chr3.3:64073171-64073190 | None:intergenic | 35.0% | |
| TGGTATCATTTCTCTATGAG+AGG | - | chr3.3:64072066-64072085 | MS.gene35604:CDS | 35.0% | |
| TGTACTTAAAAATGGGACAG+CGG | + | chr3.3:64073661-64073680 | None:intergenic | 35.0% | |
| TTCCTAAAACCAGTATTAGG+TGG | - | chr3.3:64072825-64072844 | MS.gene35604:intron | 35.0% | |
| TTTAACCATGGAATCCCAAA+AGG | - | chr3.3:64073339-64073358 | MS.gene35604:intron | 35.0% | |
| ! | GGAAAGTTACCGTAACATTT+TGG | - | chr3.3:64073447-64073466 | MS.gene35604:CDS | 35.0% |
| ! | TCTTTAGAAGTGCGTATGAT+AGG | + | chr3.3:64072683-64072702 | None:intergenic | 35.0% |
| ! | TTTTGCTAGGAACTTCATCT+TGG | - | chr3.3:64073122-64073141 | MS.gene35604:intron | 35.0% |
| !! | GTGTTATTTCCCTTAGTTGA+AGG | + | chr3.3:64073949-64073968 | None:intergenic | 35.0% |
| !!! | ATAAACCTTTTGGGATTCCA+TGG | + | chr3.3:64073347-64073366 | None:intergenic | 35.0% |
| !!! | TGGACTTTTTTCTTTGGTTG+TGG | - | chr3.3:64072905-64072924 | MS.gene35604:intron | 35.0% |
| !!! | TTCCACCTAATACTGGTTTT+AGG | + | chr3.3:64072830-64072849 | None:intergenic | 35.0% |
| AAAAATGGGACAGCGGTAAA+AGG | + | chr3.3:64073654-64073673 | None:intergenic | 40.0% | |
| AAAACCACCCCATACAGAAA+AGG | + | chr3.3:64072105-64072124 | None:intergenic | 40.0% | |
| AAACATCCATGAGCTCTGTT+GGG | + | chr3.3:64072518-64072537 | None:intergenic | 40.0% | |
| AAGTTCACGTTCAGAGAGAA+AGG | + | chr3.3:64074237-64074256 | None:intergenic | 40.0% | |
| ACCTGTCTTTCAAGCAACAA+AGG | - | chr3.3:64074052-64074071 | MS.gene35604:intron | 40.0% | |
| ACTACTCAGAGAACATGTTG+AGG | - | chr3.3:64072934-64072953 | MS.gene35604:intron | 40.0% | |
| AGCACGAAACATGTTCTTCA+TGG | + | chr3.3:64073388-64073407 | None:intergenic | 40.0% | |
| AGGAAGTGAGACAAGCTAAA+CGG | + | chr3.3:64073523-64073542 | None:intergenic | 40.0% | |
| ATGCTCCTCTAAACTCTTAC+TGG | + | chr3.3:64072326-64072345 | None:intergenic | 40.0% | |
| CCACGAATGAGAGACAAAAT+TGG | + | chr3.3:64073971-64073990 | None:intergenic | 40.0% | |
| CCTGTCTTTCAAGCAACAAA+GGG | - | chr3.3:64074053-64074072 | MS.gene35604:intron | 40.0% | |
| CTGCAGTTTGAACAGATGAA+GGG | - | chr3.3:64072801-64072820 | MS.gene35604:CDS | 40.0% | |
| GCAATATCAGGTCATGGAAA+TGG | + | chr3.3:64073560-64073579 | None:intergenic | 40.0% | |
| GCAGCAGAAATCATCACAAA+AGG | + | chr3.3:64074314-64074333 | None:intergenic | 40.0% | |
| GGCCCATTTGTCTAATAACT+TGG | + | chr3.3:64073821-64073840 | None:intergenic | 40.0% | |
| TAACAAGTTAAGCCACAACC+TGG | + | chr3.3:64072396-64072415 | None:intergenic | 40.0% | |
| TAGGTCCAGTAAGAGTTTAG+AGG | - | chr3.3:64072318-64072337 | MS.gene35604:intron | 40.0% | |
| TATTCACTTACAGCTGCTGA+TGG | + | chr3.3:64073234-64073253 | None:intergenic | 40.0% | |
| TCAGTTTAGCCTCACAATCT+TGG | + | chr3.3:64074028-64074047 | None:intergenic | 40.0% | |
| TCCAACAAGCATGCCAAATA+TGG | + | chr3.3:64073707-64073726 | None:intergenic | 40.0% | |
| TTTCAGCTACCTGCAATATC+AGG | + | chr3.3:64073572-64073591 | None:intergenic | 40.0% | |
| TTTCCATGACCTGATATTGC+AGG | - | chr3.3:64073560-64073579 | MS.gene35604:CDS | 40.0% | |
| ! | ATAAGTCGTGTTTTACGACC+TGG | - | chr3.3:64073591-64073610 | MS.gene35604:intron | 40.0% |
| ! | CCAATTTTGTCTCTCATTCG+TGG | - | chr3.3:64073968-64073987 | MS.gene35604:intron | 40.0% |
| ! | CGTCAAACCTTTTCTGTATG+GGG | - | chr3.3:64072095-64072114 | MS.gene35604:CDS | 40.0% |
| ! | GCGTCAAACCTTTTCTGTAT+GGG | - | chr3.3:64072094-64072113 | MS.gene35604:CDS | 40.0% |
| ! | TTGTTGAGGCATGGGTTATT+TGG | - | chr3.3:64072718-64072737 | MS.gene35604:CDS | 40.0% |
| ! | TTTTTCTTTGGTTGTGGCTC+TGG | - | chr3.3:64072911-64072930 | MS.gene35604:intron | 40.0% |
| AAAAGGCCCATCCAGTATGT+AGG | + | chr3.3:64073637-64073656 | None:intergenic | 45.0% | |
| AACATCCATGAGCTCTGTTG+GGG | + | chr3.3:64072517-64072536 | None:intergenic | 45.0% | |
| AGCTCTACTTACTCTCACTC+AGG | + | chr3.3:64073738-64073757 | None:intergenic | 45.0% | |
| ATCGATGCTAGTTGTGGAAG+TGG | - | chr3.3:64072855-64072874 | MS.gene35604:intron | 45.0% | |
| CAACCACCTACATACTGGAT+GGG | - | chr3.3:64073628-64073647 | MS.gene35604:intron | 45.0% | |
| CTACCTGCAATATCAGGTCA+TGG | + | chr3.3:64073566-64073585 | None:intergenic | 45.0% | |
| CTCGTAAGTACATCCAGCTA+TGG | - | chr3.3:64072476-64072495 | MS.gene35604:intron | 45.0% | |
| CTTATTGCTAAGCAGTGACC+AGG | - | chr3.3:64072375-64072394 | MS.gene35604:intron | 45.0% | |
| GAAACATCCATGAGCTCTGT+TGG | + | chr3.3:64072519-64072538 | None:intergenic | 45.0% | |
| GCCATATTTGGCATGCTTGT+TGG | - | chr3.3:64073703-64073722 | MS.gene35604:intron | 45.0% | |
| GCTGCAGTTTGAACAGATGA+AGG | - | chr3.3:64072800-64072819 | MS.gene35604:CDS | 45.0% | |
| GTCACCCCTTCTGTTGAATT+CGG | - | chr3.3:64072778-64072797 | MS.gene35604:CDS | 45.0% | |
| TGAACTTGAAGCTCTCTGCA+AGG | - | chr3.3:64074250-64074269 | MS.gene35604:intron | 45.0% | |
| TGCAGCCGAATTCAACAGAA+GGG | + | chr3.3:64072786-64072805 | None:intergenic | 45.0% | |
| TGTTGCAACCACCTACATAC+TGG | - | chr3.3:64073623-64073642 | MS.gene35604:intron | 45.0% | |
| TTAACCTCTTTCTCAGGACC+TGG | + | chr3.3:64072128-64072147 | None:intergenic | 45.0% | |
| ! | CAAACCTTTTCTGTATGGGG+TGG | - | chr3.3:64072098-64072117 | MS.gene35604:CDS | 45.0% |
| ! | CCCTTTGTTGCTTGAAAGAC+AGG | + | chr3.3:64074056-64074075 | None:intergenic | 45.0% |
| ! | GGCGTCAAACCTTTTCTGTA+TGG | - | chr3.3:64072093-64072112 | MS.gene35604:CDS | 45.0% |
| ! | TTTTCCAGGTCCTGAGAAAG+AGG | - | chr3.3:64072121-64072140 | MS.gene35604:CDS | 45.0% |
| !! | AATAATCATTAATTAATATT+TGG | - | chr3.3:64073250-64073269 | MS.gene35604:CDS | 5.0% |
| AAGCTCTCTGCAAGGCATGT+GGG | - | chr3.3:64074258-64074277 | MS.gene35604:intron | 50.0% | |
| ATAAGCCCCAACAGAGCTCA+TGG | - | chr3.3:64072509-64072528 | MS.gene35604:intron | 50.0% | |
| CATTTCTCTATGAGAGGGGC+TGG | - | chr3.3:64072072-64072091 | MS.gene35604:CDS | 50.0% | |
| CTGCAGCCGAATTCAACAGA+AGG | + | chr3.3:64072787-64072806 | None:intergenic | 50.0% | |
| GCAACCACCTACATACTGGA+TGG | - | chr3.3:64073627-64073646 | MS.gene35604:intron | 50.0% | |
| GCAGCCGAATTCAACAGAAG+GGG | + | chr3.3:64072785-64072804 | None:intergenic | 50.0% | |
| ! | AGTCGTGTTTTACGACCTGG+CGG | - | chr3.3:64073594-64073613 | MS.gene35604:intron | 50.0% |
| ! | CTTACAGCTGCTGATGGTGA+AGG | + | chr3.3:64073228-64073247 | None:intergenic | 50.0% |
| ! | TCTGTATGGGGTGGTTTTCC+AGG | - | chr3.3:64072107-64072126 | MS.gene35604:CDS | 50.0% |
| AGGCCCATCCAGTATGTAGG+TGG | + | chr3.3:64073634-64073653 | None:intergenic | 55.0% | |
| CAGGAGCAGCTCTTCACTGT+TGG | - | chr3.3:64073202-64073221 | MS.gene35604:CDS | 55.0% | |
| GAAGCTCTCTGCAAGGCATG+TGG | - | chr3.3:64074257-64074276 | MS.gene35604:intron | 55.0% | |
| GCTAAGCAGTGACCAGGTTG+TGG | - | chr3.3:64072381-64072400 | MS.gene35604:intron | 55.0% | |
| GTTGCAACAAAGACACCGCC+AGG | + | chr3.3:64073612-64073631 | None:intergenic | 55.0% | |
| TCCATCGATGCTGTGCATGC+AGG | - | chr3.3:64073183-64073202 | MS.gene35604:CDS | 55.0% | |
| ! | TCCTGCATGCACAGCATCGA+TGG | + | chr3.3:64073187-64073206 | None:intergenic | 55.0% |
| TCTCTGCAAGGCATGTGGGC+TGG | - | chr3.3:64074262-64074281 | MS.gene35604:intron | 60.0% | |
| !! | TGCAAGGCATGTGGGCTGGT+CGG | - | chr3.3:64074266-64074285 | MS.gene35604:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 64072059 | 64074346 | 64072059 | ID=MS.gene35604 |
| chr3.3 | mRNA | 64072059 | 64074346 | 64072059 | ID=MS.gene35604.t1;Parent=MS.gene35604 |
| chr3.3 | exon | 64074263 | 64074346 | 64074263 | ID=MS.gene35604.t1.exon1;Parent=MS.gene35604.t1 |
| chr3.3 | CDS | 64074263 | 64074346 | 64074263 | ID=cds.MS.gene35604.t1;Parent=MS.gene35604.t1 |
| chr3.3 | exon | 64073405 | 64073598 | 64073405 | ID=MS.gene35604.t1.exon2;Parent=MS.gene35604.t1 |
| chr3.3 | CDS | 64073405 | 64073598 | 64073405 | ID=cds.MS.gene35604.t1;Parent=MS.gene35604.t1 |
| chr3.3 | exon | 64073163 | 64073274 | 64073163 | ID=MS.gene35604.t1.exon3;Parent=MS.gene35604.t1 |
| chr3.3 | CDS | 64073163 | 64073274 | 64073163 | ID=cds.MS.gene35604.t1;Parent=MS.gene35604.t1 |
| chr3.3 | exon | 64072716 | 64072823 | 64072716 | ID=MS.gene35604.t1.exon4;Parent=MS.gene35604.t1 |
| chr3.3 | CDS | 64072716 | 64072823 | 64072716 | ID=cds.MS.gene35604.t1;Parent=MS.gene35604.t1 |
| chr3.3 | exon | 64072059 | 64072199 | 64072059 | ID=MS.gene35604.t1.exon5;Parent=MS.gene35604.t1 |
| chr3.3 | CDS | 64072059 | 64072199 | 64072059 | ID=cds.MS.gene35604.t1;Parent=MS.gene35604.t1 |
| Gene Sequence |
| Protein sequence |
