Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35616.t1 | XP_013460855.1 | 98.8 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 3.30E-188 | 667.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35616.t1 | Q6MEW4 | 60.6 | 221 | 87 | 0 | 97 | 317 | 4 | 224 | 1.3e-76 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35616.t1 | A0A072UYQ0 | 98.8 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 2.3e-188 | 667.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056609 | MS.gene35616 | -0.822274 | 2.59E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene35616 | -0.814419 | 1.56E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene35616 | -0.800333 | 1.51E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35616.t1 | MTR_3g074040 | 98.844 | 346 | 3 | 1 | 1 | 346 | 1 | 345 | 0.0 | 706 |
| MS.gene35616.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 74 | 326 | 1.18e-156 | 442 |
| MS.gene35616.t1 | MTR_8g091330 | 79.842 | 253 | 51 | 0 | 93 | 345 | 66 | 318 | 1.39e-156 | 442 |
| MS.gene35616.t1 | MTR_8g091330 | 80.000 | 240 | 48 | 0 | 106 | 345 | 1 | 240 | 7.15e-150 | 422 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35616.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 8.70e-179 | 499 |
| MS.gene35616.t1 | AT1G22170 | 73.089 | 327 | 87 | 1 | 19 | 344 | 1 | 327 | 8.70e-179 | 499 |
| MS.gene35616.t1 | AT1G78050 | 72.000 | 325 | 79 | 4 | 25 | 343 | 9 | 327 | 9.42e-172 | 481 |
Find 79 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACACCGCTTCTGATATTT+TGG | 0.174047 | 3.3:-63863784 | None:intergenic |
| ATTTATCATACTTGATTTCT+TGG | 0.211753 | 3.3:-63863975 | None:intergenic |
| ACGACTCACCGTGTCGAATA+AGG | 0.265042 | 3.3:-63864181 | None:intergenic |
| CTACCTTCTTACGGCGGTGC+TGG | 0.280926 | 3.3:-63864370 | None:intergenic |
| ACATACTTGGTCTCTGAAAT+AGG | 0.284432 | 3.3:-63865012 | None:intergenic |
| ATATCAGAAGCGGTGTATTA+AGG | 0.323655 | 3.3:+63863789 | MS.gene35616:CDS |
| CAAGAAACAGCAGACAGATA+TGG | 0.338348 | 3.3:+63864900 | MS.gene35616:CDS |
| TCAAAGAAGGAAGATTCATT+AGG | 0.358232 | 3.3:+63865527 | MS.gene35616:CDS |
| TTGCAATCTCATTCTCATCT+TGG | 0.370490 | 3.3:+63863746 | MS.gene35616:CDS |
| GAAGTATGTCACCATGCTAT+TGG | 0.383236 | 3.3:+63863719 | MS.gene35616:CDS |
| CATTCTTTCCAGATAAAAGT+TGG | 0.388365 | 3.3:-63865304 | None:intergenic |
| GATGTAAATATGAGATCAAC+TGG | 0.389772 | 3.3:-63864305 | None:intergenic |
| TAAAATGCATACCTTGGTAT+AGG | 0.393283 | 3.3:-63865590 | None:intergenic |
| TACAGCGTTTGGCTCTTTAC+AGG | 0.396467 | 3.3:+63866406 | MS.gene35616:intron |
| ATTCTTTCCAGATAAAAGTT+GGG | 0.399691 | 3.3:-63865303 | None:intergenic |
| TCCTCCCAATGGTGAAAGTC+TGG | 0.399875 | 3.3:+63864965 | MS.gene35616:CDS |
| TTTGTCGAGATACATGATAA+TGG | 0.419771 | 3.3:-63865360 | None:intergenic |
| TGATTTCTTGGAAGTGTCAT+TGG | 0.426824 | 3.3:-63863963 | None:intergenic |
| CCCATAAAACCAACTGAAGC+TGG | 0.429711 | 3.3:+63865559 | MS.gene35616:CDS |
| CAACAACTGACGTCTGTGAA+TGG | 0.445999 | 3.3:-63863910 | None:intergenic |
| AGTTGCCAAGCTGCTATGAC+TGG | 0.450681 | 3.3:-63864735 | None:intergenic |
| ATTAGTTTAGAACTGTCAAC+TGG | 0.450749 | 3.3:+63865484 | MS.gene35616:CDS |
| TTTCAGGTATGGAGAACTAC+AGG | 0.452952 | 3.3:+63864866 | MS.gene35616:intron |
| CTCTCGTTGTGCATAACAAT+AGG | 0.456310 | 3.3:-63864654 | None:intergenic |
| AAGAAACAGCAGACAGATAT+GGG | 0.456650 | 3.3:+63864901 | MS.gene35616:CDS |
| TGCAGTAATGGCTTGTCAAA+GGG | 0.459448 | 3.3:+63863833 | MS.gene35616:CDS |
| TCATTCTCGCTACCTTCTTA+CGG | 0.461824 | 3.3:-63864379 | None:intergenic |
| CTTACGGCGGTGCTGGGTCA+TGG | 0.466672 | 3.3:-63864363 | None:intergenic |
| TACCTTCTTACGGCGGTGCT+GGG | 0.479212 | 3.3:-63864369 | None:intergenic |
| TCTTTGAAAATGTAAAGCAT+TGG | 0.479538 | 3.3:-63865511 | None:intergenic |
| GGCTCTTTACAGGCAGAAGT+TGG | 0.481694 | 3.3:+63866416 | MS.gene35616:CDS |
| AACAACTGACGTCTGTGAAT+GGG | 0.484469 | 3.3:-63863909 | None:intergenic |
| ATTTCCAGACTTTCACCATT+GGG | 0.485719 | 3.3:-63864969 | None:intergenic |
| CATAGCTTCGGCGCCACTCA+TGG | 0.486599 | 3.3:-63864935 | None:intergenic |
| ATAGATGAGGCAATTGAAGC+TGG | 0.487774 | 3.3:+63864263 | MS.gene35616:CDS |
| AAGGGAATAAGTAGCCGCTT+TGG | 0.491574 | 3.3:+63863851 | MS.gene35616:CDS |
| TTCGACACGGTGAGTCGTTG+TGG | 0.492540 | 3.3:+63864186 | MS.gene35616:CDS |
| CATTTCCAGACTTTCACCAT+TGG | 0.497995 | 3.3:-63864970 | None:intergenic |
| ACAGACGTCAGTTGTTGATC+CGG | 0.498795 | 3.3:+63863916 | MS.gene35616:CDS |
| AATGAGAAGAATTTGTTCAC+AGG | 0.510239 | 3.3:+63864209 | MS.gene35616:CDS |
| CTGCAGTAATGGCTTGTCAA+AGG | 0.514800 | 3.3:+63863832 | MS.gene35616:CDS |
| TGTATTAAGGTTGGCGACAA+AGG | 0.518818 | 3.3:+63863802 | MS.gene35616:CDS |
| AAGAAGGAAGATTCATTAGG+AGG | 0.521386 | 3.3:+63865530 | MS.gene35616:CDS |
| AAGGAAGATTCATTAGGAGG+GGG | 0.527349 | 3.3:+63865533 | MS.gene35616:CDS |
| GTGCTGGGTCATGGCAAGCA+TGG | 0.530804 | 3.3:-63864354 | None:intergenic |
| GAATTACAATACAATTCCTC+TGG | 0.533183 | 3.3:-63863874 | None:intergenic |
| GAGGAGGTATGTCATAGCTT+CGG | 0.535709 | 3.3:-63864947 | None:intergenic |
| GACCCAGCACCGCCGTAAGA+AGG | 0.536334 | 3.3:+63864367 | MS.gene35616:CDS |
| TCTATACCCTTCTTGCTAAG+TGG | 0.548267 | 3.3:-63864245 | None:intergenic |
| AGAAGGAAGATTCATTAGGA+GGG | 0.551932 | 3.3:+63865531 | MS.gene35616:CDS |
| AGACTTTCACCATTGGGAGG+AGG | 0.552095 | 3.3:-63864963 | None:intergenic |
| CAGAAGCGGTGTATTAAGGT+TGG | 0.552496 | 3.3:+63863793 | MS.gene35616:CDS |
| TTCTTTCCAGATAAAAGTTG+GGG | 0.553857 | 3.3:-63865302 | None:intergenic |
| TCTCGACAAATTAACTTCCC+AGG | 0.565688 | 3.3:+63865373 | MS.gene35616:CDS |
| GCATAAACTCCAGCTTCAGT+TGG | 0.565994 | 3.3:-63865568 | None:intergenic |
| GAAGGAAGATTCATTAGGAG+GGG | 0.570970 | 3.3:+63865532 | MS.gene35616:CDS |
| TGATGTACCACTTAGCAAGA+AGG | 0.585970 | 3.3:+63864238 | MS.gene35616:CDS |
| GAATAGCCCAATCACCTCCT+GGG | 0.586449 | 3.3:-63865390 | None:intergenic |
| CCATTCCAGTCATAGCAGCT+TGG | 0.588646 | 3.3:+63864730 | MS.gene35616:CDS |
| CATCACCAAAATATCAGAAG+CGG | 0.592490 | 3.3:+63863779 | MS.gene35616:CDS |
| AGAGTGAACAAGCAAAGGCA+TGG | 0.594259 | 3.3:+63864673 | MS.gene35616:CDS |
| TAAGTAGCCGCTTTGGCCAG+AGG | 0.595270 | 3.3:+63863858 | MS.gene35616:CDS |
| GATGTACCACTTAGCAAGAA+GGG | 0.602199 | 3.3:+63864239 | MS.gene35616:CDS |
| TCCAGACTTTCACCATTGGG+AGG | 0.603226 | 3.3:-63864966 | None:intergenic |
| CCAAGCTGCTATGACTGGAA+TGG | 0.606063 | 3.3:-63864730 | None:intergenic |
| CAACGAGAGTGAACAAGCAA+AGG | 0.606715 | 3.3:+63864668 | MS.gene35616:CDS |
| TACAATTCCTCTGGCCAAAG+CGG | 0.621755 | 3.3:-63863865 | None:intergenic |
| ATGTTATGATTGCCGCACAC+GGG | 0.631044 | 3.3:+63865324 | MS.gene35616:CDS |
| GGAAAGAACAAGTCCATGAG+TGG | 0.633002 | 3.3:+63864922 | MS.gene35616:CDS |
| AATGTTATGATTGCCGCACA+CGG | 0.634751 | 3.3:+63865323 | MS.gene35616:CDS |
| TAGCAAGAAGGGTATAGATG+AGG | 0.640367 | 3.3:+63864250 | MS.gene35616:CDS |
| TCTCAATGAATTCCCGTGTG+CGG | 0.651372 | 3.3:-63865336 | None:intergenic |
| TATGACATACCTCCTCCCAA+TGG | 0.657183 | 3.3:+63864954 | MS.gene35616:CDS |
| TTCAGGTATGGAGAACTACA+GGG | 0.659499 | 3.3:+63864867 | MS.gene35616:intron |
| GCTTTGATCCTTATTCGACA+CGG | 0.660091 | 3.3:+63864173 | MS.gene35616:CDS |
| ATTGCAAAGAGCCAATAGCA+TGG | 0.664561 | 3.3:-63863730 | None:intergenic |
| TTCTCGCTACCTTCTTACGG+CGG | 0.686843 | 3.3:-63864376 | None:intergenic |
| TGGAGTTTATGCCTATACCA+AGG | 0.695146 | 3.3:+63865579 | MS.gene35616:CDS |
| CGACAAATTAACTTCCCAGG+AGG | 0.718042 | 3.3:+63865376 | MS.gene35616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTAATATAAATCTTAA+AGG | - | chr3.3:63865921-63865940 | None:intergenic | 10.0% |
| !! | CTAAAAATATCATCTTAAAT+GGG | - | chr3.3:63865636-63865655 | None:intergenic | 15.0% |
| !!! | AGAAAGTTTTGATTTAAAAA+TGG | + | chr3.3:63865663-63865682 | MS.gene35616:intron | 15.0% |
| !! | ATTTATCATACTTGATTTCT+TGG | - | chr3.3:63863978-63863997 | None:intergenic | 20.0% |
| !! | CCTAAAAATATCATCTTAAA+TGG | - | chr3.3:63865637-63865656 | None:intergenic | 20.0% |
| !! | TTAGAGAATATTAGTAAGTA+TGG | + | chr3.3:63864473-63864492 | MS.gene35616:intron | 20.0% |
| !! | TTCATAATTATTATCCTTTC+AGG | + | chr3.3:63864850-63864869 | MS.gene35616:intron | 20.0% |
| !!! | CCATTTAAGATGATATTTTT+AGG | + | chr3.3:63865634-63865653 | MS.gene35616:intron | 20.0% |
| !!! | TATAACAAAGACTAATTTTC+TGG | - | chr3.3:63864568-63864587 | None:intergenic | 20.0% |
| ! | AAATATCATCTTAAATGGGA+CGG | - | chr3.3:63865632-63865651 | None:intergenic | 25.0% |
| ! | AATTCTACCAGAAAGAAAAA+GGG | - | chr3.3:63866038-63866057 | None:intergenic | 25.0% |
| ! | AGGAGAAGTTTCAAAAATTA+AGG | - | chr3.3:63864792-63864811 | None:intergenic | 25.0% |
| ! | AGGTATTACAACTTTCTATT+AGG | - | chr3.3:63866093-63866112 | None:intergenic | 25.0% |
| ! | AGTTGAAATTGTCATATGAT+TGG | + | chr3.3:63864103-63864122 | MS.gene35616:intron | 25.0% |
| ! | ATTAGGACTAGATTTATCTA+AGG | - | chr3.3:63866076-63866095 | None:intergenic | 25.0% |
| ! | ATTCTTTCCAGATAAAAGTT+GGG | - | chr3.3:63865306-63865325 | None:intergenic | 25.0% |
| ! | TTAAGTATCAAGTTTAACCA+GGG | - | chr3.3:63865137-63865156 | None:intergenic | 25.0% |
| ! | TTGAATTTCATTCATGATTG+AGG | + | chr3.3:63865937-63865956 | MS.gene35616:intron | 25.0% |
| !! | AATTATTATCCTTTCAGGTA+TGG | + | chr3.3:63864855-63864874 | MS.gene35616:intron | 25.0% |
| !! | ATGCTTTACATTTTCAAAGA+AGG | + | chr3.3:63865514-63865533 | MS.gene35616:CDS | 25.0% |
| !! | CTCGATCAAAATATTTCTTT+TGG | + | chr3.3:63866128-63866147 | MS.gene35616:intron | 25.0% |
| !! | TCTATGTTTTATATTGCTAG+TGG | - | chr3.3:63865727-63865746 | None:intergenic | 25.0% |
| !! | TCTTTGAAAATGTAAAGCAT+TGG | - | chr3.3:63865514-63865533 | None:intergenic | 25.0% |
| !!! | AACTTGTAAGGTCAATTTTT+TGG | + | chr3.3:63865209-63865228 | MS.gene35616:intron | 25.0% |
| !!! | ATTTTGATCGAGAAAATCAA+CGG | - | chr3.3:63866120-63866139 | None:intergenic | 25.0% |
| !!! | TGATACTTAAGTGTTTTTTG+AGG | + | chr3.3:63865147-63865166 | MS.gene35616:intron | 25.0% |
| AAACACAATTTCCACATACT+TGG | - | chr3.3:63865028-63865047 | None:intergenic | 30.0% | |
| ACTAATAACCTGTCAAAAAG+CGG | - | chr3.3:63865470-63865489 | None:intergenic | 30.0% | |
| ACTTCTTGTAATCAAGTACT+AGG | + | chr3.3:63865859-63865878 | MS.gene35616:intron | 30.0% | |
| CAATTCTACCAGAAAGAAAA+AGG | - | chr3.3:63866039-63866058 | None:intergenic | 30.0% | |
| CATTCTTTCCAGATAAAAGT+TGG | - | chr3.3:63865307-63865326 | None:intergenic | 30.0% | |
| CTTAAGTATCAAGTTTAACC+AGG | - | chr3.3:63865138-63865157 | None:intergenic | 30.0% | |
| GAATTACAATACAATTCCTC+TGG | - | chr3.3:63863877-63863896 | None:intergenic | 30.0% | |
| GATGTAAATATGAGATCAAC+TGG | - | chr3.3:63864308-63864327 | None:intergenic | 30.0% | |
| GCAACCAACAAAAATATACT+CGG | - | chr3.3:63864037-63864056 | None:intergenic | 30.0% | |
| TAAAATGCATACCTTGGTAT+AGG | - | chr3.3:63865593-63865612 | None:intergenic | 30.0% | |
| TAAGCAAACATGTCAAACTA+AGG | - | chr3.3:63865993-63866012 | None:intergenic | 30.0% | |
| TCAAAGAAGGAAGATTCATT+AGG | + | chr3.3:63865527-63865546 | MS.gene35616:CDS | 30.0% | |
| TGGTTAAAGTGATCATCATA+TGG | + | chr3.3:63865234-63865253 | MS.gene35616:intron | 30.0% | |
| TTAAATGGGACGGAATATAA+AGG | - | chr3.3:63865622-63865641 | None:intergenic | 30.0% | |
| TTAAGTTATCCAGACAAATG+TGG | + | chr3.3:63865185-63865204 | MS.gene35616:intron | 30.0% | |
| TTCTTTCCAGATAAAAGTTG+GGG | - | chr3.3:63865305-63865324 | None:intergenic | 30.0% | |
| TTTGTCGAGATACATGATAA+TGG | - | chr3.3:63865363-63865382 | None:intergenic | 30.0% | |
| ! | AAGGATTTTATCTGCAGTAA+TGG | + | chr3.3:63863821-63863840 | MS.gene35616:CDS | 30.0% |
| ! | AATGAGAAGAATTTGTTCAC+AGG | + | chr3.3:63864209-63864228 | MS.gene35616:CDS | 30.0% |
| ! | ATTAGTTTAGAACTGTCAAC+TGG | + | chr3.3:63865484-63865503 | MS.gene35616:CDS | 30.0% |
| ! | TTCTTATCCCTTTTTCTTTC+TGG | + | chr3.3:63866028-63866047 | MS.gene35616:intron | 30.0% |
| ! | TTTTGATCGAGAAAATCAAC+GGG | - | chr3.3:63866119-63866138 | None:intergenic | 30.0% |
| !! | CATAGAACATCAAAAGTGTT+TGG | + | chr3.3:63865741-63865760 | MS.gene35616:intron | 30.0% |
| !!! | GTAAGGTCAATTTTTTGGTA+TGG | + | chr3.3:63865214-63865233 | MS.gene35616:intron | 30.0% |
| AACCAAGTAAAGTCGTTAGT+GGG | - | chr3.3:63866387-63866406 | None:intergenic | 35.0% | |
| AAGAAACAGCAGACAGATAT+GGG | + | chr3.3:63864901-63864920 | MS.gene35616:CDS | 35.0% | |
| AAGAAGGAAGATTCATTAGG+AGG | + | chr3.3:63865530-63865549 | MS.gene35616:CDS | 35.0% | |
| AAGTTTAACCAGGGAAAATG+AGG | - | chr3.3:63865128-63865147 | None:intergenic | 35.0% | |
| AGAAGGAAGATTCATTAGGA+GGG | + | chr3.3:63865531-63865550 | MS.gene35616:CDS | 35.0% | |
| ATATCAGAAGCGGTGTATTA+AGG | + | chr3.3:63863789-63863808 | MS.gene35616:CDS | 35.0% | |
| ATCTGCAACATTGGTATCAA+TGG | - | chr3.3:63865278-63865297 | None:intergenic | 35.0% | |
| ATGGATATTGTTTGTCCAGA+AGG | + | chr3.3:63865682-63865701 | MS.gene35616:intron | 35.0% | |
| ATTTCCAGACTTTCACCATT+GGG | - | chr3.3:63864972-63864991 | None:intergenic | 35.0% | |
| CAATGACTGACACTTATTTG+AGG | - | chr3.3:63866224-63866243 | None:intergenic | 35.0% | |
| CATCACCAAAATATCAGAAG+CGG | + | chr3.3:63863779-63863798 | MS.gene35616:CDS | 35.0% | |
| CTAATAACCTGTCAAAAAGC+GGG | - | chr3.3:63865469-63865488 | None:intergenic | 35.0% | |
| TAACCAAGTAAAGTCGTTAG+TGG | - | chr3.3:63866388-63866407 | None:intergenic | 35.0% | |
| TACAAGTTACCACATTTGTC+TGG | - | chr3.3:63865197-63865216 | None:intergenic | 35.0% | |
| TATTTCAGAGACCAAGTATG+TGG | + | chr3.3:63865014-63865033 | MS.gene35616:intron | 35.0% | |
| TCGGTATAAAATGCATACCT+TGG | - | chr3.3:63865599-63865618 | None:intergenic | 35.0% | |
| TGCATTTGTCTGGATAACTT+AGG | + | chr3.3:63865087-63865106 | MS.gene35616:intron | 35.0% | |
| TTGCAATCTCATTCTCATCT+TGG | + | chr3.3:63863746-63863765 | MS.gene35616:CDS | 35.0% | |
| ! | ATACACCGCTTCTGATATTT+TGG | - | chr3.3:63863787-63863806 | None:intergenic | 35.0% |
| ! | ATTGAACCCCAACTTTTATC+TGG | + | chr3.3:63865296-63865315 | MS.gene35616:CDS | 35.0% |
| ! | GACAAATGTGGTAACTTGTA+AGG | + | chr3.3:63865197-63865216 | MS.gene35616:intron | 35.0% |
| ! | TGCAGAGTTGTGAATTTTTG+AGG | + | chr3.3:63865061-63865080 | MS.gene35616:intron | 35.0% |
| ! | TTCTTTCTGGTAGAATTGCA+AGG | + | chr3.3:63866041-63866060 | MS.gene35616:intron | 35.0% |
| !! | ACATACTTGGTCTCTGAAAT+AGG | - | chr3.3:63865015-63865034 | None:intergenic | 35.0% |
| !! | TGATTTCTTGGAAGTGTCAT+TGG | - | chr3.3:63863966-63863985 | None:intergenic | 35.0% |
| !! | TGGCTTTCTAAGATGTTAGT+TGG | + | chr3.3:63866148-63866167 | MS.gene35616:intron | 35.0% |
| !! | TGTGCCGAGTATATTTTTGT+TGG | + | chr3.3:63864030-63864049 | MS.gene35616:intron | 35.0% |
| !!! | ATTGGTGTTGCTTTTTGAAG+GGG | - | chr3.3:63863948-63863967 | None:intergenic | 35.0% |
| !!! | CATTGGTGTTGCTTTTTGAA+GGG | - | chr3.3:63863949-63863968 | None:intergenic | 35.0% |
| !!! | TCATTGGTGTTGCTTTTTGA+AGG | - | chr3.3:63863950-63863969 | None:intergenic | 35.0% |
| AACAACTGACGTCTGTGAAT+GGG | - | chr3.3:63863912-63863931 | None:intergenic | 40.0% | |
| AAGGAAGATTCATTAGGAGG+GGG | + | chr3.3:63865533-63865552 | MS.gene35616:CDS | 40.0% | |
| AAGTTGGATCATCGAGTGTT+AGG | + | chr3.3:63864063-63864082 | MS.gene35616:intron | 40.0% | |
| AATGTTATGATTGCCGCACA+CGG | + | chr3.3:63865323-63865342 | MS.gene35616:CDS | 40.0% | |
| ATAGATGAGGCAATTGAAGC+TGG | + | chr3.3:63864263-63864282 | MS.gene35616:CDS | 40.0% | |
| ATGGGACGGAATATAAAGGT+CGG | - | chr3.3:63865618-63865637 | None:intergenic | 40.0% | |
| ATTGCAAAGAGCCAATAGCA+TGG | - | chr3.3:63863733-63863752 | None:intergenic | 40.0% | |
| CAAGAAACAGCAGACAGATA+TGG | + | chr3.3:63864900-63864919 | MS.gene35616:CDS | 40.0% | |
| CATTTCCAGACTTTCACCAT+TGG | - | chr3.3:63864973-63864992 | None:intergenic | 40.0% | |
| CTCTCGTTGTGCATAACAAT+AGG | - | chr3.3:63864657-63864676 | None:intergenic | 40.0% | |
| CTTTACTTGGTTACAGCGTT+TGG | + | chr3.3:63866395-63866414 | MS.gene35616:intron | 40.0% | |
| GAAGGAAGATTCATTAGGAG+GGG | + | chr3.3:63865532-63865551 | MS.gene35616:CDS | 40.0% | |
| GAAGTATGTCACCATGCTAT+TGG | + | chr3.3:63863719-63863738 | MS.gene35616:CDS | 40.0% | |
| GATGTACCACTTAGCAAGAA+GGG | + | chr3.3:63864239-63864258 | MS.gene35616:CDS | 40.0% | |
| GCTTTGATCCTTATTCGACA+CGG | + | chr3.3:63864173-63864192 | MS.gene35616:CDS | 40.0% | |
| GTCTAGATCGTATGTTGGAA+AGG | + | chr3.3:63865895-63865914 | MS.gene35616:intron | 40.0% | |
| TAAGTGTCAGTCATTGACGT+CGG | + | chr3.3:63866228-63866247 | MS.gene35616:intron | 40.0% | |
| TCATTCTCGCTACCTTCTTA+CGG | - | chr3.3:63864382-63864401 | None:intergenic | 40.0% | |
| TCTATACCCTTCTTGCTAAG+TGG | - | chr3.3:63864248-63864267 | None:intergenic | 40.0% | |
| TCTCGACAAATTAACTTCCC+AGG | + | chr3.3:63865373-63865392 | MS.gene35616:CDS | 40.0% | |
| TGAGAGTCTAGATCGTATGT+TGG | + | chr3.3:63865890-63865909 | MS.gene35616:intron | 40.0% | |
| TGATGTACCACTTAGCAAGA+AGG | + | chr3.3:63864238-63864257 | MS.gene35616:CDS | 40.0% | |
| TGCTATTCAGCACGTTGTAA+AGG | - | chr3.3:63864812-63864831 | None:intergenic | 40.0% | |
| TGGAGTTTATGCCTATACCA+AGG | + | chr3.3:63865579-63865598 | MS.gene35616:CDS | 40.0% | |
| TGTAGTTCTCCATACCTGAA+AGG | - | chr3.3:63864867-63864886 | None:intergenic | 40.0% | |
| TGTATTAAGGTTGGCGACAA+AGG | + | chr3.3:63863802-63863821 | MS.gene35616:CDS | 40.0% | |
| TTACAACGTGCTGAATAGCA+CGG | + | chr3.3:63864812-63864831 | MS.gene35616:intron | 40.0% | |
| TTCAGGTATGGAGAACTACA+GGG | + | chr3.3:63864867-63864886 | MS.gene35616:intron | 40.0% | |
| ! | TAGCAAGAAGGGTATAGATG+AGG | + | chr3.3:63864250-63864269 | MS.gene35616:CDS | 40.0% |
| ! | TGCAGTAATGGCTTGTCAAA+GGG | + | chr3.3:63863833-63863852 | MS.gene35616:CDS | 40.0% |
| ! | TGTTGGTTGCTTCTTGAAGT+TGG | + | chr3.3:63864047-63864066 | MS.gene35616:intron | 40.0% |
| ! | TTTCAGGTATGGAGAACTAC+AGG | + | chr3.3:63864866-63864885 | MS.gene35616:intron | 40.0% |
| ! | TTTGAGGTTGTGCATTTGTC+TGG | + | chr3.3:63865077-63865096 | MS.gene35616:intron | 40.0% |
| !! | CTGATGCTCTAAAATGATGC+TGG | + | chr3.3:63866308-63866327 | MS.gene35616:intron | 40.0% |
| !! | TTAACCATTAACTTGCCTGC+AGG | + | chr3.3:63864629-63864648 | MS.gene35616:intron | 40.0% |
| !!! | AACTTTTCCCGCTTTTTGAC+AGG | + | chr3.3:63865459-63865478 | MS.gene35616:intron | 40.0% |
| !!! | CCAGCTTCAGTTGGTTTTAT+GGG | - | chr3.3:63865562-63865581 | None:intergenic | 40.0% |
| !!! | TCCAGCTTCAGTTGGTTTTA+TGG | - | chr3.3:63865563-63865582 | None:intergenic | 40.0% |
| AAGGGAATAAGTAGCCGCTT+TGG | + | chr3.3:63863851-63863870 | MS.gene35616:CDS | 45.0% | |
| ACAGACGTCAGTTGTTGATC+CGG | + | chr3.3:63863916-63863935 | MS.gene35616:CDS | 45.0% | |
| AGAGTGAACAAGCAAAGGCA+TGG | + | chr3.3:63864673-63864692 | MS.gene35616:CDS | 45.0% | |
| ATGTTATGATTGCCGCACAC+GGG | + | chr3.3:63865324-63865343 | MS.gene35616:CDS | 45.0% | |
| CAAAGCTGCTTCATCTGAGT+TGG | - | chr3.3:63864159-63864178 | None:intergenic | 45.0% | |
| CAACAACTGACGTCTGTGAA+TGG | - | chr3.3:63863913-63863932 | None:intergenic | 45.0% | |
| CAACGAGAGTGAACAAGCAA+AGG | + | chr3.3:63864668-63864687 | MS.gene35616:CDS | 45.0% | |
| CAGAAGCGGTGTATTAAGGT+TGG | + | chr3.3:63863793-63863812 | MS.gene35616:CDS | 45.0% | |
| CCCATAAAACCAACTGAAGC+TGG | + | chr3.3:63865559-63865578 | MS.gene35616:CDS | 45.0% | |
| CGACAAATTAACTTCCCAGG+AGG | + | chr3.3:63865376-63865395 | MS.gene35616:CDS | 45.0% | |
| GCATAAACTCCAGCTTCAGT+TGG | - | chr3.3:63865571-63865590 | None:intergenic | 45.0% | |
| GGAAAGAACAAGTCCATGAG+TGG | + | chr3.3:63864922-63864941 | MS.gene35616:CDS | 45.0% | |
| TAACTTCCCAGGAGGTGATT+GGG | + | chr3.3:63865384-63865403 | MS.gene35616:intron | 45.0% | |
| TACAATTCCTCTGGCCAAAG+CGG | - | chr3.3:63863868-63863887 | None:intergenic | 45.0% | |
| TATGACATACCTCCTCCCAA+TGG | + | chr3.3:63864954-63864973 | MS.gene35616:CDS | 45.0% | |
| TCGAGAAAATCAACGGGTCA+AGG | - | chr3.3:63866113-63866132 | None:intergenic | 45.0% | |
| TCTCAATGAATTCCCGTGTG+CGG | - | chr3.3:63865339-63865358 | None:intergenic | 45.0% | |
| TGCCCACTAACGACTTTACT+TGG | + | chr3.3:63866382-63866401 | MS.gene35616:intron | 45.0% | |
| TGGATCATCGAGTGTTAGGT+TGG | + | chr3.3:63864067-63864086 | MS.gene35616:intron | 45.0% | |
| TGGGGTTCAATCTGCAACAT+TGG | - | chr3.3:63865287-63865306 | None:intergenic | 45.0% | |
| TTAACTTCCCAGGAGGTGAT+TGG | + | chr3.3:63865383-63865402 | MS.gene35616:intron | 45.0% | |
| ! | CTGCAGTAATGGCTTGTCAA+AGG | + | chr3.3:63863832-63863851 | MS.gene35616:CDS | 45.0% |
| ! | CTTCGTGTCGCTATGTGATA+TGG | + | chr3.3:63865780-63865799 | MS.gene35616:intron | 45.0% |
| ! | GAGGAGGTATGTCATAGCTT+CGG | - | chr3.3:63864950-63864969 | None:intergenic | 45.0% |
| ! | TTGTTCTGCCTCATTTTCCC+TGG | + | chr3.3:63865117-63865136 | MS.gene35616:intron | 45.0% |
| !! | CTTTTTGAAGGGGACAACAC+CGG | - | chr3.3:63863938-63863957 | None:intergenic | 45.0% |
| !! | TACAGCGTTTGGCTCTTTAC+AGG | + | chr3.3:63866406-63866425 | MS.gene35616:intron | 45.0% |
| ACGACTCACCGTGTCGAATA+AGG | - | chr3.3:63864184-63864203 | None:intergenic | 50.0% | |
| AGACTTTCACCATTGGGAGG+AGG | - | chr3.3:63864966-63864985 | None:intergenic | 50.0% | |
| AGTTGCCAAGCTGCTATGAC+TGG | - | chr3.3:63864738-63864757 | None:intergenic | 50.0% | |
| CCAAGCTGCTATGACTGGAA+TGG | - | chr3.3:63864733-63864752 | None:intergenic | 50.0% | |
| CCATTCCAGTCATAGCAGCT+TGG | + | chr3.3:63864730-63864749 | MS.gene35616:CDS | 50.0% | |
| GAATAGCCCAATCACCTCCT+GGG | - | chr3.3:63865393-63865412 | None:intergenic | 50.0% | |
| GCATAACAATAGGCACCTGC+AGG | - | chr3.3:63864647-63864666 | None:intergenic | 50.0% | |
| GGCTCTTTACAGGCAGAAGT+TGG | + | chr3.3:63866416-63866435 | MS.gene35616:CDS | 50.0% | |
| GTTTGTCCAGAAGGTTGCAG+TGG | + | chr3.3:63865691-63865710 | MS.gene35616:intron | 50.0% | |
| TCCAGACTTTCACCATTGGG+AGG | - | chr3.3:63864969-63864988 | None:intergenic | 50.0% | |
| TCCTCCCAATGGTGAAAGTC+TGG | + | chr3.3:63864965-63864984 | MS.gene35616:CDS | 50.0% | |
| TGAATAGCCCAATCACCTCC+TGG | - | chr3.3:63865394-63865413 | None:intergenic | 50.0% | |
| TTCTCGCTACCTTCTTACGG+CGG | - | chr3.3:63864379-63864398 | None:intergenic | 50.0% | |
| GGCACCTGCAGGCAAGTTAA+TGG | - | chr3.3:63864636-63864655 | None:intergenic | 55.0% | |
| TACCTTCTTACGGCGGTGCT+GGG | - | chr3.3:63864372-63864391 | None:intergenic | 55.0% | |
| TTCGACACGGTGAGTCGTTG+TGG | + | chr3.3:63864186-63864205 | MS.gene35616:CDS | 55.0% | |
| ! | CAAGTGCCACTGCAACCTTC+TGG | - | chr3.3:63865700-63865719 | None:intergenic | 55.0% |
| ! | TAAGTAGCCGCTTTGGCCAG+AGG | + | chr3.3:63863858-63863877 | MS.gene35616:CDS | 55.0% |
| CATAGCTTCGGCGCCACTCA+TGG | - | chr3.3:63864938-63864957 | None:intergenic | 60.0% | |
| CTACCTTCTTACGGCGGTGC+TGG | - | chr3.3:63864373-63864392 | None:intergenic | 60.0% | |
| GTGCTGGGTCATGGCAAGCA+TGG | - | chr3.3:63864357-63864376 | None:intergenic | 60.0% | |
| GACCCAGCACCGCCGTAAGA+AGG | + | chr3.3:63864367-63864386 | MS.gene35616:CDS | 65.0% | |
| ! | CTTACGGCGGTGCTGGGTCA+TGG | - | chr3.3:63864366-63864385 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 63863710 | 63866452 | 63863710 | ID=MS.gene35616 |
| chr3.3 | mRNA | 63863710 | 63866452 | 63863710 | ID=MS.gene35616.t1;Parent=MS.gene35616 |
| chr3.3 | exon | 63863710 | 63863986 | 63863710 | ID=MS.gene35616.t1.exon1;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63863710 | 63863986 | 63863710 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63864165 | 63864388 | 63864165 | ID=MS.gene35616.t1.exon2;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63864165 | 63864388 | 63864165 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63864651 | 63864769 | 63864651 | ID=MS.gene35616.t1.exon3;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63864651 | 63864769 | 63864651 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63864872 | 63865028 | 63864872 | ID=MS.gene35616.t1.exon4;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63864872 | 63865028 | 63864872 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63865296 | 63865397 | 63865296 | ID=MS.gene35616.t1.exon5;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63865296 | 63865397 | 63865296 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63865481 | 63865600 | 63865481 | ID=MS.gene35616.t1.exon6;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63865481 | 63865600 | 63865481 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| chr3.3 | exon | 63866411 | 63866452 | 63866411 | ID=MS.gene35616.t1.exon7;Parent=MS.gene35616.t1 |
| chr3.3 | CDS | 63866411 | 63866452 | 63866411 | ID=cds.MS.gene35616.t1;Parent=MS.gene35616.t1 |
| Gene Sequence |
| Protein sequence |
