AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35702.t1 MTR_2g086580 96.306 379 14 0 1 379 73 451 0.0 761
MS.gene35702.t1 MTR_7g104900 56.888 392 145 6 1 379 97 477 1.43e-145 421
MS.gene35702.t1 MTR_4g052850 74.157 267 67 1 1 267 92 356 5.99e-143 410
MS.gene35702.t1 MTR_8g026680 64.026 303 92 3 1 303 109 394 6.50e-129 379
MS.gene35702.t1 MTR_1g089500 74.026 231 60 0 1 231 67 297 7.01e-124 366
MS.gene35702.t1 MTR_7g107560 71.429 231 66 0 1 231 60 290 1.23e-111 333
MS.gene35702.t1 MTR_5g064420 69.364 173 43 2 21 193 33 195 2.84e-77 238
MS.gene35702.t1 MTR_7g081615 67.500 160 50 1 40 199 14 171 4.47e-71 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35702.t1 AT5G22400 60.422 379 123 5 1 379 115 466 7.18e-145 419
MS.gene35702.t1 AT3G11490 68.978 274 81 1 1 270 91 364 1.86e-134 391
MS.gene35702.t1 AT1G08340 72.727 231 63 0 1 231 1 231 3.44e-126 367
MS.gene35702.t1 AT2G46710 73.593 231 61 0 1 231 103 333 2.97e-123 363
MS.gene35702.t1 AT4G03100 70.638 235 69 0 1 235 78 312 1.22e-120 356

Find 65 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGAAAATGCTTATATTA+AGG 0.202458 2.4:-13701713 MS.gene35702:CDS
TGATAGGTTCAATGGTTTCT+TGG 0.248536 2.4:-13703789 MS.gene35702:CDS
CCTAGCACTAGGAGGCCTTC+TGG 0.256375 2.4:+13703736 None:intergenic
AAAAGTGTCGGTCGAGAAAA+AGG 0.290122 2.4:-13701301 MS.gene35702:CDS
GGAACTTCCTAGCGGCGTTC+TGG 0.311234 2.4:-13702115 MS.gene35702:CDS
GATAGGTTCAATGGTTTCTT+GGG 0.329734 2.4:-13703788 MS.gene35702:CDS
TTGTCTGGCAGGACTAATTA+AGG 0.347959 2.4:-13702914 MS.gene35702:intron
GAAGGTTCTAAATTCAATCT+TGG 0.352625 2.4:+13701651 None:intergenic
CAATACAGTCTTCCTCAGTT+TGG 0.364130 2.4:+13702061 None:intergenic
GTATGTTCAAGAAGGGTTGC+AGG 0.366227 2.4:-13703142 MS.gene35702:intron
CTGAAGCTGCACTCTTGGAT+TGG 0.367227 2.4:-13702014 MS.gene35702:CDS
TGCATTAACAGAAGAATTGT+TGG 0.374854 2.4:+13703174 None:intergenic
TCCTCAACTGAAAGAGAATC+TGG 0.397060 2.4:-13701489 MS.gene35702:CDS
AGTAGTTCAAATGCTAGAAA+AGG 0.402969 2.4:-13701363 MS.gene35702:CDS
TCATGCTGAAGCTGCACTCT+TGG 0.410731 2.4:-13702019 MS.gene35702:CDS
GCGACATGGCGCACGTTTGT+TGG 0.420819 2.4:+13703824 None:intergenic
GAACAGACCTGAGTCATGTT+TGG 0.422768 2.4:+13701910 None:intergenic
CTAGCACTAGGAGGCCTTCT+GGG 0.423002 2.4:+13703737 None:intergenic
CAATGTACATCAATGTCTTC+AGG 0.428431 2.4:+13702934 None:intergenic
TACATCAGCCATTAGATTGA+TGG 0.431052 2.4:+13701990 None:intergenic
GGAGGCCTTCTGGGAAAATC+AGG 0.439195 2.4:+13703746 None:intergenic
GTTAGGAATCAATTGAACTT+AGG 0.440142 2.4:-13702964 MS.gene35702:CDS
GGATTGGGCCATCAATCTAA+TGG 0.467322 2.4:-13701998 MS.gene35702:CDS
TGAAGCTGCACTCTTGGATT+GGG 0.473582 2.4:-13702013 MS.gene35702:CDS
AAATCAGGTTCAAACTCATC+AGG 0.480208 2.4:+13703761 None:intergenic
ATAGTCAAGAGGAACATGTT+AGG 0.482181 2.4:-13702981 MS.gene35702:CDS
GCGTACATCAATGCAGTGAA+TGG 0.486250 2.4:+13701753 None:intergenic
GCCAGATTCTCTTTCAGTTG+AGG 0.491573 2.4:+13701488 None:intergenic
GGACAACAACCTGTGATCAA+TGG 0.493660 2.4:-13701324 MS.gene35702:CDS
GAATCAATTGAACTTAGGAT+TGG 0.495739 2.4:-13702959 MS.gene35702:CDS
GTAGTTCAAATGCTAGAAAA+GGG 0.502633 2.4:-13701362 MS.gene35702:CDS
GATCAGACCGAGTCGAAGCT+TGG 0.514597 2.4:-13701248 MS.gene35702:CDS
GGCATTTGTATGTTCAAGAA+GGG 0.517493 2.4:-13703149 MS.gene35702:CDS
AGACATTGATGTACATTGTC+TGG 0.518937 2.4:-13702929 MS.gene35702:CDS
AGGCATTTGTATGTTCAAGA+AGG 0.519056 2.4:-13703150 MS.gene35702:CDS
TTCACCGCCAAGCTTCGACT+CGG 0.526197 2.4:+13701241 None:intergenic
GTGGGGAAGAATAACAAGTC+TGG 0.528840 2.4:-13701393 MS.gene35702:CDS
CAAAAGTAACGTGTGCGACA+TGG 0.530420 2.4:+13703810 None:intergenic
TTTGTACATGTATAGGTGGA+AGG 0.531414 2.4:-13703027 MS.gene35702:intron
AAGGACGCTACGAGAAAGAA+AGG 0.533822 2.4:-13701694 MS.gene35702:CDS
CAATTCTTCTGTTAATGCAA+AGG 0.543052 2.4:-13703170 MS.gene35702:CDS
ACATGGCGCACGTTTGTTGG+AGG 0.545851 2.4:+13703827 None:intergenic
ATTGATGTACATTGTCTGGC+AGG 0.558765 2.4:-13702925 MS.gene35702:CDS
TTGTACATGTATAGGTGGAA+GGG 0.562108 2.4:-13703026 MS.gene35702:intron
CCAGAAGGCCTCCTAGTGCT+AGG 0.566429 2.4:-13703736 MS.gene35702:intron
GAAATGACTCGAAAAGTCTA+CGG 0.568493 2.4:+13701613 None:intergenic
CGGTGTACATTCTCATCAGA+AGG 0.569866 2.4:+13701633 None:intergenic
AATGAGTCCAGAACGCCGCT+AGG 0.582282 2.4:+13702108 None:intergenic
TGAGAATCTAATTTGCAATG+AGG 0.590817 2.4:-13701448 MS.gene35702:CDS
AAGAGTGCAGCTTCAGCATG+AGG 0.593298 2.4:+13702021 None:intergenic
CAGTTATCTTATGATTCAAG+AGG 0.593577 2.4:-13703207 MS.gene35702:CDS
TAATGCAGACAATAGTCAAG+AGG 0.607790 2.4:-13702992 MS.gene35702:CDS
GAACGCGCGCAACATTGCCA+TGG 0.618131 2.4:-13701941 MS.gene35702:CDS
TGCAGCAGCAGACAATGAAG+AGG 0.625545 2.4:-13701577 MS.gene35702:CDS
TGTGATCAATGGAAAAGTGT+CGG 0.637614 2.4:-13701313 MS.gene35702:CDS
TGTTGCATATACCTAGCACT+AGG 0.641672 2.4:+13703725 None:intergenic
AGTTATCTTATGATTCAAGA+GGG 0.643572 2.4:-13703206 MS.gene35702:CDS
TTTCCTCCGAAAAGAAACGT+GGG 0.647448 2.4:-13701411 MS.gene35702:CDS
TGCATATACCTAGCACTAGG+AGG 0.648465 2.4:+13703728 None:intergenic
AAGACTGTATTGAACTAGTG+AGG 0.648835 2.4:-13702050 MS.gene35702:CDS
CAGACCGAGTCGAAGCTTGG+CGG 0.664957 2.4:-13701245 MS.gene35702:CDS
GTTTCCTCCGAAAAGAAACG+TGG 0.672738 2.4:-13701412 MS.gene35702:CDS
TTCCTCCGAAAAGAAACGTG+GGG 0.693572 2.4:-13701410 MS.gene35702:CDS
AGTAATGCAATGCCAAACTG+AGG 0.695720 2.4:-13702073 MS.gene35702:CDS
TGGTTTCGGGAACTTCCTAG+CGG 0.730728 2.4:-13702123 MS.gene35702:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTACGTTTTTAAAA+AGG - chr2.4:13702356-13702375 MS.gene35702:intron 10.0%
!! ATCATAAAACTTTACATATA+GGG + chr2.4:13702755-13702774 None:intergenic 15.0%
!! TTATTAACAAAAATCAGATA+TGG + chr2.4:13701456-13701475 None:intergenic 15.0%
!!! TATAAAAGCATTAATGAAAA+AGG + chr2.4:13702889-13702908 None:intergenic 15.0%
!! AAAATCAAACAAAAAAAGAG+AGG + chr2.4:13701811-13701830 None:intergenic 20.0%
!! ACCATTTATATGTCATAATT+TGG - chr2.4:13701564-13701583 MS.gene35702:CDS 20.0%
!! GATATGGAAAAAAATAAAAC+TGG + chr2.4:13701440-13701459 None:intergenic 20.0%
!! GATCATAAAACTTTACATAT+AGG + chr2.4:13702756-13702775 None:intergenic 20.0%
!! TCATAATTTGGATTGAATAA+GGG - chr2.4:13701576-13701595 MS.gene35702:CDS 20.0%
!! TCCAAATTATGACATATAAA+TGG + chr2.4:13701568-13701587 None:intergenic 20.0%
!! TCTTGAAAATGCTTATATTA+AGG - chr2.4:13703368-13703387 MS.gene35702:intron 20.0%
!!! AATATTTAGGATGGTAAATT+GGG - chr2.4:13702591-13702610 MS.gene35702:intron 20.0%
! AAACTTTACATATAGGGTAA+AGG + chr2.4:13702749-13702768 None:intergenic 25.0%
! ACTAGTTCAATTATATTGCT+TGG - chr2.4:13702018-13702037 MS.gene35702:CDS 25.0%
! AGTAGTGTGTATATAATTCA+TGG - chr2.4:13701489-13701508 MS.gene35702:CDS 25.0%
! AGTTATCTTATGATTCAAGA+GGG - chr2.4:13701875-13701894 MS.gene35702:intron 25.0%
! AGTTGAATTTGTACATGTAT+AGG - chr2.4:13702047-13702066 MS.gene35702:CDS 25.0%
! ATATATCCTGTAGTTATGAA+TGG - chr2.4:13702620-13702639 MS.gene35702:intron 25.0%
! GAGGAAAAAGTAAAACAAAA+AGG + chr2.4:13701792-13701811 None:intergenic 25.0%
! GCTAAACTATTATTAGTTCA+TGG - chr2.4:13703231-13703250 MS.gene35702:CDS 25.0%
! GTCATAATTTGGATTGAATA+AGG - chr2.4:13701575-13701594 MS.gene35702:CDS 25.0%
! TTTGTCTCATTTATTAGACT+TGG + chr2.4:13702506-13702525 None:intergenic 25.0%
!! CAATATTTAGGATGGTAAAT+TGG - chr2.4:13702590-13702609 MS.gene35702:intron 25.0%
!! TGATATTCTTGTACTTTTCA+AGG - chr2.4:13702933-13702952 MS.gene35702:CDS 25.0%
!! TTCAAGTTAATCACAGTATT+TGG - chr2.4:13703281-13703300 MS.gene35702:intron 25.0%
!! TTTTCAAAGATGAAAATGCA+TGG + chr2.4:13702842-13702861 None:intergenic 25.0%
!!! ATGTTGAATAGTTTTGCTAT+AGG - chr2.4:13702312-13702331 MS.gene35702:intron 25.0%
!!! TCAAAAGCTATCTAAGATTT+TGG - chr2.4:13701666-13701685 MS.gene35702:CDS 25.0%
AAAGGAGTTGAAGAAGTTAA+AGG + chr2.4:13702731-13702750 None:intergenic 30.0%
AAATGTCCATTCATAACTAC+AGG + chr2.4:13702629-13702648 None:intergenic 30.0%
AGTAGTTCAAATGCTAGAAA+AGG - chr2.4:13703718-13703737 MS.gene35702:intron 30.0%
ATGATTCGTTCGCTAATTAA+AGG + chr2.4:13701749-13701768 None:intergenic 30.0%
CAATTCTTCTGTTAATGCAA+AGG - chr2.4:13701911-13701930 MS.gene35702:intron 30.0%
CAGTTATCTTATGATTCAAG+AGG - chr2.4:13701874-13701893 MS.gene35702:intron 30.0%
GAATCAATTGAACTTAGGAT+TGG - chr2.4:13702122-13702141 MS.gene35702:CDS 30.0%
GTAGTTCAAATGCTAGAAAA+GGG - chr2.4:13703719-13703738 MS.gene35702:intron 30.0%
GTGACAATGCATTACTAAAT+TGG - chr2.4:13701598-13701617 MS.gene35702:CDS 30.0%
GTTAGGAATCAATTGAACTT+AGG - chr2.4:13702117-13702136 MS.gene35702:CDS 30.0%
TCTGATAGTACTTATACCTT+AGG - chr2.4:13703258-13703277 MS.gene35702:intron 30.0%
TGAATTTGTACATGTATAGG+TGG - chr2.4:13702050-13702069 MS.gene35702:CDS 30.0%
TGATTCATCATGTAACTGAT+TGG - chr2.4:13702446-13702465 MS.gene35702:intron 30.0%
TGCATTAACAGAAGAATTGT+TGG + chr2.4:13701910-13701929 None:intergenic 30.0%
TTACCATCCTAAATATTGCA+TGG + chr2.4:13702588-13702607 None:intergenic 30.0%
! AACTATGCTAAGAAAAGCAT+AGG - chr2.4:13701704-13701723 MS.gene35702:CDS 30.0%
! TGAGAATCTAATTTGCAATG+AGG - chr2.4:13703633-13703652 MS.gene35702:intron 30.0%
!! ACATCATTTTCAAGACACAT+TGG - chr2.4:13702530-13702549 MS.gene35702:intron 30.0%
!! GAAGGTTCTAAATTCAATCT+TGG + chr2.4:13703433-13703452 None:intergenic 30.0%
!!! GTTACTTTTGATAGGTTCAA+TGG - chr2.4:13701284-13701303 MS.gene35702:CDS 30.0%
AAATCAGGTTCAAACTCATC+AGG + chr2.4:13701323-13701342 None:intergenic 35.0%
AAGACTGTATTGAACTAGTG+AGG - chr2.4:13703031-13703050 MS.gene35702:intron 35.0%
ACACCATGCAATATTTAGGA+TGG - chr2.4:13702582-13702601 MS.gene35702:intron 35.0%
AGACATTGATGTACATTGTC+TGG - chr2.4:13702152-13702171 MS.gene35702:intron 35.0%
AGCTACACCATGCAATATTT+AGG - chr2.4:13702578-13702597 MS.gene35702:intron 35.0%
AGGCATTTGTATGTTCAAGA+AGG - chr2.4:13701931-13701950 MS.gene35702:CDS 35.0%
ATAGTCAAGAGGAACATGTT+AGG - chr2.4:13702100-13702119 MS.gene35702:CDS 35.0%
ATTCGTTCGCTAATTAAAGG+CGG + chr2.4:13701746-13701765 None:intergenic 35.0%
CAATGTACATCAATGTCTTC+AGG + chr2.4:13702150-13702169 None:intergenic 35.0%
GAAATGACTCGAAAAGTCTA+CGG + chr2.4:13703471-13703490 None:intergenic 35.0%
GATAGGTTCAATGGTTTCTT+GGG - chr2.4:13701293-13701312 MS.gene35702:CDS 35.0%
GCATTACTAAATTGGATGCT+TGG - chr2.4:13701606-13701625 MS.gene35702:CDS 35.0%
GGACTAATTAAGGTATGACA+TGG - chr2.4:13702177-13702196 MS.gene35702:intron 35.0%
GGCATTTGTATGTTCAAGAA+GGG - chr2.4:13701932-13701951 MS.gene35702:CDS 35.0%
GTTTCGTGAATTGATCTGAA+TGG - chr2.4:13702253-13702272 MS.gene35702:intron 35.0%
TAATGCAGACAATAGTCAAG+AGG - chr2.4:13702089-13702108 MS.gene35702:CDS 35.0%
TACATCAGCCATTAGATTGA+TGG + chr2.4:13703094-13703113 None:intergenic 35.0%
TCATGTAACTGATTGGAGAA+AGG - chr2.4:13702453-13702472 MS.gene35702:intron 35.0%
TGATAGGTTCAATGGTTTCT+TGG - chr2.4:13701292-13701311 MS.gene35702:CDS 35.0%
TTGTACATGTATAGGTGGAA+GGG - chr2.4:13702055-13702074 MS.gene35702:CDS 35.0%
TTTGTACATGTATAGGTGGA+AGG - chr2.4:13702054-13702073 MS.gene35702:CDS 35.0%
! ACATGTAGTGCAACTGTTTT+TGG - chr2.4:13701832-13701851 MS.gene35702:intron 35.0%
! CTGTGATTAACTTGAACCTA+AGG + chr2.4:13703277-13703296 None:intergenic 35.0%
! TGTGATCAATGGAAAAGTGT+CGG - chr2.4:13703768-13703787 MS.gene35702:CDS 35.0%
! TTGTTGTCCTCTTGTCTTTT+TGG + chr2.4:13703746-13703765 None:intergenic 35.0%
!! ACTGGTCTCAAATTTTGACA+AGG + chr2.4:13701422-13701441 None:intergenic 35.0%
!! TACTTTTCAAGGCTTGGTTT+CGG - chr2.4:13702944-13702963 MS.gene35702:CDS 35.0%
!! TTCTTGTACTTTTCAAGGCT+TGG - chr2.4:13702938-13702957 MS.gene35702:CDS 35.0%
!!! GGAGTTTTTTTCGAGTGATT+CGG + chr2.4:13703575-13703594 None:intergenic 35.0%
AAAGGGTCCAAAAAGACAAG+AGG - chr2.4:13703736-13703755 MS.gene35702:intron 40.0%
AGTAATGCAATGCCAAACTG+AGG - chr2.4:13703008-13703027 MS.gene35702:CDS 40.0%
ATTGATGTACATTGTCTGGC+AGG - chr2.4:13702156-13702175 MS.gene35702:intron 40.0%
CAATACAGTCTTCCTCAGTT+TGG + chr2.4:13703023-13703042 None:intergenic 40.0%
TCCTCAACTGAAAGAGAATC+TGG - chr2.4:13703592-13703611 MS.gene35702:intron 40.0%
TGTTGCATATACCTAGCACT+AGG + chr2.4:13701359-13701378 None:intergenic 40.0%
TTGTCTGGCAGGACTAATTA+AGG - chr2.4:13702167-13702186 MS.gene35702:intron 40.0%
TTTCCTCCGAAAAGAAACGT+GGG - chr2.4:13703670-13703689 MS.gene35702:intron 40.0%
! GACACTTTTCCATTGATCAC+AGG + chr2.4:13703769-13703788 None:intergenic 40.0%
! TTCTTCCCCACGTTTCTTTT+CGG + chr2.4:13703679-13703698 None:intergenic 40.0%
! TTGAACCTGATTTTCCCAGA+AGG - chr2.4:13701330-13701349 MS.gene35702:CDS 40.0%
!! AAAAGTGTCGGTCGAGAAAA+AGG - chr2.4:13703780-13703799 MS.gene35702:CDS 40.0%
!! AAAGTGTCGGTCGAGAAAAA+GGG - chr2.4:13703781-13703800 MS.gene35702:CDS 40.0%
!! ACTTTTCAAGGCTTGGTTTC+GGG - chr2.4:13702945-13702964 MS.gene35702:CDS 40.0%
!! TTGGCTTTTCTGATTGCAGA+TGG - chr2.4:13703300-13703319 MS.gene35702:intron 40.0%
!!! GTTCGTTTTTTCTCCTTCAC+CGG - chr2.4:13702690-13702709 MS.gene35702:intron 40.0%
!!! TCGCACACGTTACTTTTGAT+AGG - chr2.4:13701276-13701295 MS.gene35702:CDS 40.0%
AAGGACCAGTGTTCAAACTC+CGG + chr2.4:13702712-13702731 None:intergenic 45.0%
AAGGACGCTACGAGAAAGAA+AGG - chr2.4:13703387-13703406 MS.gene35702:intron 45.0%
CAAAAGTAACGTGTGCGACA+TGG + chr2.4:13701274-13701293 None:intergenic 45.0%
CATGTTTGGCGCAAAAACCA+TGG + chr2.4:13703160-13703179 None:intergenic 45.0%
CGGTGTACATTCTCATCAGA+AGG + chr2.4:13703451-13703470 None:intergenic 45.0%
GAACAGACCTGAGTCATGTT+TGG + chr2.4:13703174-13703193 None:intergenic 45.0%
GCCAGATTCTCTTTCAGTTG+AGG + chr2.4:13703596-13703615 None:intergenic 45.0%
GCGTACATCAATGCAGTGAA+TGG + chr2.4:13703331-13703350 None:intergenic 45.0%
GGACAACAACCTGTGATCAA+TGG - chr2.4:13703757-13703776 MS.gene35702:CDS 45.0%
GGATTGGGCCATCAATCTAA+TGG - chr2.4:13703083-13703102 MS.gene35702:intron 45.0%
GTATGTTCAAGAAGGGTTGC+AGG - chr2.4:13701939-13701958 MS.gene35702:CDS 45.0%
GTGGGGAAGAATAACAAGTC+TGG - chr2.4:13703688-13703707 MS.gene35702:intron 45.0%
GTTTCCTCCGAAAAGAAACG+TGG - chr2.4:13703669-13703688 MS.gene35702:intron 45.0%
TGAAGCTGCACTCTTGGATT+GGG - chr2.4:13703068-13703087 MS.gene35702:intron 45.0%
TGCATATACCTAGCACTAGG+AGG + chr2.4:13701356-13701375 None:intergenic 45.0%
TTCCTCCGAAAAGAAACGTG+GGG - chr2.4:13703671-13703690 MS.gene35702:intron 45.0%
! TTTTGCGCCAAACATGACTC+AGG - chr2.4:13703164-13703183 MS.gene35702:CDS 45.0%
!! AAAATAAAAAAAAGTTTAAT+TGG + chr2.4:13703196-13703215 None:intergenic 5.0%
!!! AATTAAACTTTTTTTTATTT+TGG - chr2.4:13703195-13703214 MS.gene35702:CDS 5.0%
CAGTGTTCAAACTCCGGTGA+AGG + chr2.4:13702706-13702725 None:intergenic 50.0%
CGGTCGAGAAAAAGGGAATG+AGG - chr2.4:13703788-13703807 MS.gene35702:CDS 50.0%
CTGAAGCTGCACTCTTGGAT+TGG - chr2.4:13703067-13703086 MS.gene35702:intron 50.0%
CTTCACCGGAGTTTGAACAC+TGG - chr2.4:13702704-13702723 MS.gene35702:intron 50.0%
TCATGCTGAAGCTGCACTCT+TGG - chr2.4:13703062-13703081 MS.gene35702:intron 50.0%
TGCAGCAGCAGACAATGAAG+AGG - chr2.4:13703504-13703523 MS.gene35702:intron 50.0%
TGGTTTCGGGAACTTCCTAG+CGG - chr2.4:13702958-13702977 MS.gene35702:CDS 50.0%
! AAGAGTGCAGCTTCAGCATG+AGG + chr2.4:13703063-13703082 None:intergenic 50.0%
! TTCCCCACGTTTCTTTTCGG+AGG + chr2.4:13703676-13703695 None:intergenic 50.0%
AATGAGTCCAGAACGCCGCT+AGG + chr2.4:13702976-13702995 None:intergenic 55.0%
CTAGCACTAGGAGGCCTTCT+GGG + chr2.4:13701347-13701366 None:intergenic 55.0%
GATCAGACCGAGTCGAAGCT+TGG - chr2.4:13703833-13703852 MS.gene35702:CDS 55.0%
! ACATGGCGCACGTTTGTTGG+AGG + chr2.4:13701257-13701276 None:intergenic 55.0%
! GGAGGCCTTCTGGGAAAATC+AGG + chr2.4:13701338-13701357 None:intergenic 55.0%
CAGACCGAGTCGAAGCTTGG+CGG - chr2.4:13703836-13703855 MS.gene35702:CDS 60.0%
CCAGAAGGCCTCCTAGTGCT+AGG - chr2.4:13701345-13701364 MS.gene35702:CDS 60.0%
CCTAGCACTAGGAGGCCTTC+TGG + chr2.4:13701348-13701367 None:intergenic 60.0%
GAACGCGCGCAACATTGCCA+TGG - chr2.4:13703140-13703159 MS.gene35702:intron 60.0%
GCGACATGGCGCACGTTTGT+TGG + chr2.4:13701260-13701279 None:intergenic 60.0%
GGAACTTCCTAGCGGCGTTC+TGG - chr2.4:13702966-13702985 MS.gene35702:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 13701242 13703861 13701242 ID=MS.gene35702
chr2.4 mRNA 13701242 13703861 13701242 ID=MS.gene35702.t1;Parent=MS.gene35702
chr2.4 exon 13703737 13703861 13703737 ID=MS.gene35702.t1.exon1;Parent=MS.gene35702.t1
chr2.4 CDS 13703737 13703861 13703737 ID=cds.MS.gene35702.t1;Parent=MS.gene35702.t1
chr2.4 exon 13703143 13703263 13703143 ID=MS.gene35702.t1.exon2;Parent=MS.gene35702.t1
chr2.4 CDS 13703143 13703263 13703143 ID=cds.MS.gene35702.t1;Parent=MS.gene35702.t1
chr2.4 exon 13702915 13703034 13702915 ID=MS.gene35702.t1.exon3;Parent=MS.gene35702.t1
chr2.4 CDS 13702915 13703034 13702915 ID=cds.MS.gene35702.t1;Parent=MS.gene35702.t1
chr2.4 exon 13701918 13702148 13701918 ID=MS.gene35702.t1.exon4;Parent=MS.gene35702.t1
chr2.4 CDS 13701918 13702148 13701918 ID=cds.MS.gene35702.t1;Parent=MS.gene35702.t1
chr2.4 exon 13701242 13701784 13701242 ID=MS.gene35702.t1.exon5;Parent=MS.gene35702.t1
chr2.4 CDS 13701242 13701784 13701242 ID=cds.MS.gene35702.t1;Parent=MS.gene35702.t1
Gene Sequence

>MS.gene35702

ATGGACATAAGTCCTCCAACAAACGTGCGCCATGTCGCACACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAGTTTGAACCTGATTTTCCCAGAAGGCCTCCTAGTGCTAGGTATATGCAACACGAATTCGCGACAGAAAAAAATGAAATTTGTCTCAAATTTCCTTGTCAAAATTTGAGACCAGTTTTATTTTTTTCCATATCTGATTTTTGTTAATAATTCAATTTTTTTTAGTAGTGTGTATATAATTCATGGTTATGATGTTCTATTACATTTTTTATTATTACAAAACATACTTTACTTCTTTACCATTTATATGTCATAATTTGGATTGAATAAGGGTGACAATGCATTACTAAATTGGATGCTTGGTTTTGATTAATTTCAAGAGAAGATTTGTTTATTTCTTTCAAAAGCTATCTAAGATTTTGGTTATAAAATGTTTTAAACTATGCTAAGAAAAGCATAGGCTAATTTTTTTAGATGCCGCCTTTAATTAGCGAACGAATCATTTTCATTTGATCTAATATGTCCTTTTTGTTTTACTTTTTCCTCTCTTTTTTTGTTTGATTTTCACATGTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCTATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTTCTGTTAATGCAAAGGCATTTGTATGTTCAAGAAGGGTTGCAGGTTAATCAGTTATATGATAAGTGCTTATGCTATAAGCGCATGTTCAATTTTCAAATGACTAGTTCAATTATATTGCTTGGTTTTAAAGTTGAATTTGTACATGTATAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGAATCAATTGAACTTAGGATTGGTTCCTGAAGACATTGATGTACATTGTCTGGCAGGACTAATTAAGGTATGACATGGCTAGATGATTGCATCTAGTTCTTCTGTTCATGTTGATGTGTTTGTGAATGTTTGTTTCGTGAATTGATCTGAATGGTGATATTGCGAGAATTGAGTCTCTTTTGTGATCTGAATGTTGAATAGTTTTGCTATAGGAGAATTTATGTTTTTCAAGATTTTTTTTTACGTTTTTAAAAAGGATCTAAATCTGTTAAAAATAAATTACTATAGATCTGACTAATGATAGAATCATGTGATGCAGAAAATTGATTCATCATGTAACTGATTGGAGAAAGGACATTATCAATTTAAACAGTTGTCAGTCCAAGTCTAATAAATGAGACAAACAAAACATCATTTTCAAGACACATTGGCTAATTTCATCAAATTAATACTATTAGCTACACCATGCAATATTTAGGATGGTAAATTGGGAATCTGATATATCCTGTAGTTATGAATGGACATTTTTTTTTTAATTATAGAAAAATGTTAGTATGTTAGATGTTATGTTCGTTTTTTCTCCTTCACCGGAGTTTGAACACTGGTCCTTTAACTTCTTCAACTCCTTTACCCTATATGTAAAGTTTTATGATCTTGCACAAAGCAGAAGTCTTATGATGCTAATGTCATGTGTATTTGACAAGAATTTCATTGTCACCATGCATTTTCATCTTTGAAAATTCAGATAAACAGTTCTATATTTTCCTTTTTCATTAATGCTTTTATACTATATACTATGATGATTTAGTATTGATATTCTTGTACTTTTCAAGGCTTGGTTTCGGGAACTTCCTAGCGGCGTTCTGGACTCATTATCACAAGAGCAAGTAATGCAATGCCAAACTGAGGAAGACTGTATTGAACTAGTGAGGCATCTACCTCATGCTGAAGCTGCACTCTTGGATTGGGCCATCAATCTAATGGCTGATGTAGTCGAACACGAAAATCTCAATAAGATGAACGCGCGCAACATTGCCATGGTTTTTGCGCCAAACATGACTCAGGTCTGTTCCAATTAAACTTTTTTTTATTTTGGCTATGAAGTATTTGCTAAACTATTATTAGTTCATGGTTATTCTGATAGTACTTATACCTTAGGTTCAAGTTAATCACAGTATTTGGCTTTTCTGATTGCAGATGGCAGATCCATTCACTGCATTGATGTACGCAGTTCAAGTGATGAATTTCTTGAAAATGCTTATATTAAGGACGCTACGAGAAAGAAAGGATTCTATCGTCGAATCTAATCCAAGATTGAATTTAGAACCTTCTGATGAGAATGTACACCGTAGACTTTTCGAGTCATTTCAGAAAGAAGATGCTGCAGCAGCAGACAATGAAGAGGCTAAAGAAATTTTTGTTACAGAAAAAACTGTCTTAGAATGTACATCCGAATCACTCGAAAAAAACTCCTCAACTGAAAGAGAATCTGGCAGTTTGATAAGCACTTCTGAGAATCTAATTTGCAATGAGGAATTGTATTGTGAGTTTCCTCCGAAAAGAAACGTGGGGAAGAATAACAAGTCTGGTCAATCAAGTAGTTCAAATGCTAGAAAAGGGTCCAAAAAGACAAGAGGACAACAACCTGTGATCAATGGAAAAGTGTCGGTCGAGAAAAAGGGAATGAGGACTTTGAGCAGCACAGATACAAGATCAGACCGAGTCGAAGCTTGGCGGTGA
Protein sequence

>MS.gene35702.t1

MDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQEGLQVEGIFRINADNSQEEHVRNQLNLGLVPEDIDVHCLAGLIKAWFRELPSGVLDSLSQEQVMQCQTEEDCIELVRHLPHAEAALLDWAINLMADVVEHENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKMLILRTLRERKDSIVESNPRLNLEPSDENVHRRLFESFQKEDAAAADNEEAKEIFVTEKTVLECTSESLEKNSSTERESGSLISTSENLICNEELYCEFPPKRNVGKNNKSGQSSSSNARKGSKKTRGQQPVINGKVSVEKKGMRTLSSTDTRSDRVEAWR