Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35857.t1 | XP_024632417.1 | 96.2 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 1.60E-63 | 251.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35857.t1 | Q9FM54 | 64.0 | 125 | 44 | 1 | 5 | 128 | 4 | 128 | 1.3e-37 | 157.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35857.t1 | A0A072VAF7 | 96.2 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 1.2e-63 | 251.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051452 | MS.gene35857 | 0.830012 | 3.73E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35857.t1 | MTR_2g088720 | 96.212 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 2.65e-89 | 255 |
MS.gene35857.t1 | MTR_2g088720 | 96.212 | 132 | 5 | 0 | 1 | 132 | 12 | 143 | 3.32e-89 | 255 |
MS.gene35857.t1 | MTR_7g106600 | 83.077 | 130 | 22 | 0 | 4 | 133 | 1 | 130 | 1.43e-76 | 223 |
MS.gene35857.t1 | MTR_7g106580 | 78.947 | 133 | 28 | 0 | 1 | 133 | 1 | 133 | 1.97e-73 | 215 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35857.t1 | AT5G62980 | 63.492 | 126 | 45 | 1 | 5 | 129 | 4 | 129 | 5.87e-52 | 160 |
MS.gene35857.t1 | AT5G62980 | 63.492 | 126 | 45 | 1 | 5 | 129 | 4 | 129 | 5.87e-52 | 160 |
MS.gene35857.t1 | AT3G11750 | 62.810 | 121 | 44 | 1 | 10 | 129 | 21 | 141 | 9.45e-51 | 158 |
MS.gene35857.t1 | AT3G21730 | 52.500 | 120 | 56 | 1 | 11 | 129 | 40 | 159 | 5.10e-41 | 134 |
MS.gene35857.t1 | AT3G21730 | 46.032 | 63 | 33 | 1 | 68 | 129 | 13 | 75 | 1.50e-13 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATAGCTAAGAAAGTTATTGA+AGG | + | 15132:43953-43972 | MS.gene35857:CDS | 25.0% |
TAAAATTGCAATCGCTACTT+TGG | + | 15132:44009-44028 | MS.gene35857:CDS | 30.0% | |
! | AAGTAGCGATTGCAATTTTA+TGG | - | 15132:44009-44028 | None:intergenic | 30.0% |
! | AGTAGCGATTGCAATTTTAT+GGG | - | 15132:44008-44027 | None:intergenic | 30.0% |
! | TTGACTTTCTATGGTTTTCA+CGG | + | 15132:43803-43822 | MS.gene35857:CDS | 30.0% |
!! | AAGGTGTTGATGCATTAATA+GGG | + | 15132:43756-43775 | MS.gene35857:CDS | 30.0% |
GGAGACAAACTTATTCTAAG+GGG | + | 15132:43779-43798 | MS.gene35857:CDS | 35.0% | |
GGGAGACAAACTTATTCTAA+GGG | + | 15132:43778-43797 | MS.gene35857:CDS | 35.0% | |
! | AAGTTATCAGATTTTCCAGC+TGG | - | 15132:43899-43918 | None:intergenic | 35.0% |
!! | AGGTGTTGATGCATTAATAG+GGG | + | 15132:43757-43776 | MS.gene35857:CDS | 35.0% |
!! | GAAGGTGTTGATGCATTAAT+AGG | + | 15132:43755-43774 | MS.gene35857:CDS | 35.0% |
GGGGAGACAAACTTATTCTA+AGG | + | 15132:43777-43796 | MS.gene35857:CDS | 40.0% | |
TCAACGCCTAAGTAATCAAC+CGG | - | 15132:44100-44119 | None:intergenic | 40.0% | |
! | CTAAGGGGATTGACTTTCTA+TGG | + | 15132:43794-43813 | MS.gene35857:CDS | 40.0% |
!! | GGTGTTGATGCATTAATAGG+GGG | + | 15132:43758-43777 | MS.gene35857:CDS | 40.0% |
AAAGCCTCATGTGGCAATTC+AGG | + | 15132:44072-44091 | MS.gene35857:CDS | 45.0% | |
AAGCCTCATGTGGCAATTCA+GGG | + | 15132:44073-44092 | MS.gene35857:CDS | 45.0% | |
ACAGAAGTTTGTGGTAGACG+TGG | + | 15132:43853-43872 | MS.gene35857:CDS | 45.0% | |
GATATCTGCTGTTCGTGTGA+AGG | + | 15132:44045-44064 | MS.gene35857:CDS | 45.0% | |
! | TGGTTTTCACGGAGCAATAG+CGG | + | 15132:43814-43833 | MS.gene35857:CDS | 45.0% |
!! | TCAAAACCTTCTGGAGTCAG+TGG | + | 15132:43982-44001 | MS.gene35857:CDS | 45.0% |
AGGACCAGCTCAAAACCTTC+TGG | + | 15132:43973-43992 | MS.gene35857:CDS | 50.0% | |
CAGGGTCCGGTTGATTACTT+AGG | + | 15132:44091-44110 | MS.gene35857:CDS | 50.0% | |
GAAGGTTGGAAAGCCTCATG+TGG | + | 15132:44063-44082 | MS.gene35857:CDS | 50.0% | |
GACGCTAGGACAGAAGTTTG+TGG | + | 15132:43844-43863 | MS.gene35857:CDS | 50.0% | |
TCATGTGGCAATTCAGGGTC+CGG | + | 15132:44078-44097 | MS.gene35857:CDS | 50.0% | |
TCTGCTGTTCGTGTGAAGGT+TGG | + | 15132:44049-44068 | MS.gene35857:CDS | 50.0% | |
TGGTTGGATCTCAAACCAGC+TGG | + | 15132:43881-43900 | MS.gene35857:CDS | 50.0% | |
TTGTGGTAGACGTGGATGCT+TGG | + | 15132:43861-43880 | MS.gene35857:CDS | 50.0% | |
! | ACGGAGCAATAGCGGAAGAA+AGG | + | 15132:43822-43841 | MS.gene35857:CDS | 50.0% |
! | ATAGCGGAAGAAAGGACGCT+AGG | + | 15132:43830-43849 | MS.gene35857:CDS | 50.0% |
!! | GTTGAGATTCTGAGACGCAG+AGG | + | 15132:44115-44134 | MS.gene35857:CDS | 50.0% |
!!! | GACTCCAGAAGGTTTTGAGC+TGG | - | 15132:43980-43999 | None:intergenic | 50.0% |
GGACCCTGAATTGCCACATG+AGG | - | 15132:44079-44098 | None:intergenic | 55.0% | |
GGTAGACGTGGATGCTTGGT+TGG | + | 15132:43865-43884 | MS.gene35857:CDS | 55.0% | |
!! | TATGGGCCACTGACTCCAGA+AGG | - | 15132:43991-44010 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
15132 | gene | 43752 | 44153 | 43752 | ID=MS.gene35857 |
15132 | mRNA | 43752 | 44153 | 43752 | ID=MS.gene35857.t1;Parent=MS.gene35857 |
15132 | exon | 43752 | 44153 | 43752 | ID=MS.gene35857.t1.exon1;Parent=MS.gene35857.t1 |
15132 | CDS | 43752 | 44153 | 43752 | ID=cds.MS.gene35857.t1;Parent=MS.gene35857.t1 |
Gene Sequence |
Protein sequence |