AlfalfaGEDB | MS.gene35857

M. sativa cultivar XinJiangDaYe / MS.gene35857

KEGG: K01633
GO: GO:0003674 GO:0003824 GO:0004150 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0016832 GO:0019752 GO:0034641 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0046483 GO:0051186 GO:0071704 GO:1901360 GO:1901564
PFAM: PF02152.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35857.t1	XP_024632417.1	96.2	132	5	0	1	132	1	132	1.60E-63	251.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35857.t1	Q9FM54	64.0	125	44	1	5	128	4	128	1.3e-37	157.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35857.t1	A0A072VAF7	96.2	132	5	0	1	132	1	132	1.2e-63	251.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051452	MS.gene35857	0.830012	3.73E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35857.t1	MTR_2g088720	96.212	132	5	1	132	1	132	2.65e-89	255
MS.gene35857.t1	MTR_2g088720	96.212	132	5	1	132	12	143	3.32e-89	255
MS.gene35857.t1	MTR_7g106600	83.077	130	22	4	133	1	130	1.43e-76	223
MS.gene35857.t1	MTR_7g106580	78.947	133	28	1	133	1	133	1.97e-73	215

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35857.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35857.t1	AT5G62980	63.492	126	45	1	5	129	4	129	5.87e-52	160
MS.gene35857.t1	AT3G11750	62.810	121	44	1	10	129	21	141	9.45e-51	158
MS.gene35857.t1	AT3G21730	52.500	120	56	1	11	129	40	159	5.10e-41	134
MS.gene35857.t1	AT3G21730	46.032	63	33	1	68	129	13	75	1.50e-13	62.0

Find 0 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATAGCTAAGAAAGTTATTGA+AGG	+	15132:43953-43972	MS.gene35857:CDS	25.0%
	TAAAATTGCAATCGCTACTT+TGG	+	15132:44009-44028	MS.gene35857:CDS	30.0%
!	AAGTAGCGATTGCAATTTTA+TGG	-	15132:44009-44028	None:intergenic	30.0%
!	AGTAGCGATTGCAATTTTAT+GGG	-	15132:44008-44027	None:intergenic	30.0%
!	TTGACTTTCTATGGTTTTCA+CGG	+	15132:43803-43822	MS.gene35857:CDS	30.0%
!!	AAGGTGTTGATGCATTAATA+GGG	+	15132:43756-43775	MS.gene35857:CDS	30.0%
	GGAGACAAACTTATTCTAAG+GGG	+	15132:43779-43798	MS.gene35857:CDS	35.0%
	GGGAGACAAACTTATTCTAA+GGG	+	15132:43778-43797	MS.gene35857:CDS	35.0%
!	AAGTTATCAGATTTTCCAGC+TGG	-	15132:43899-43918	None:intergenic	35.0%
!!	AGGTGTTGATGCATTAATAG+GGG	+	15132:43757-43776	MS.gene35857:CDS	35.0%
!!	GAAGGTGTTGATGCATTAAT+AGG	+	15132:43755-43774	MS.gene35857:CDS	35.0%
	GGGGAGACAAACTTATTCTA+AGG	+	15132:43777-43796	MS.gene35857:CDS	40.0%
	TCAACGCCTAAGTAATCAAC+CGG	-	15132:44100-44119	None:intergenic	40.0%
!	CTAAGGGGATTGACTTTCTA+TGG	+	15132:43794-43813	MS.gene35857:CDS	40.0%
!!	GGTGTTGATGCATTAATAGG+GGG	+	15132:43758-43777	MS.gene35857:CDS	40.0%
	AAAGCCTCATGTGGCAATTC+AGG	+	15132:44072-44091	MS.gene35857:CDS	45.0%
	AAGCCTCATGTGGCAATTCA+GGG	+	15132:44073-44092	MS.gene35857:CDS	45.0%
	ACAGAAGTTTGTGGTAGACG+TGG	+	15132:43853-43872	MS.gene35857:CDS	45.0%
	GATATCTGCTGTTCGTGTGA+AGG	+	15132:44045-44064	MS.gene35857:CDS	45.0%
!	TGGTTTTCACGGAGCAATAG+CGG	+	15132:43814-43833	MS.gene35857:CDS	45.0%
!!	TCAAAACCTTCTGGAGTCAG+TGG	+	15132:43982-44001	MS.gene35857:CDS	45.0%
	AGGACCAGCTCAAAACCTTC+TGG	+	15132:43973-43992	MS.gene35857:CDS	50.0%
	CAGGGTCCGGTTGATTACTT+AGG	+	15132:44091-44110	MS.gene35857:CDS	50.0%
	GAAGGTTGGAAAGCCTCATG+TGG	+	15132:44063-44082	MS.gene35857:CDS	50.0%
	GACGCTAGGACAGAAGTTTG+TGG	+	15132:43844-43863	MS.gene35857:CDS	50.0%
	TCATGTGGCAATTCAGGGTC+CGG	+	15132:44078-44097	MS.gene35857:CDS	50.0%
	TCTGCTGTTCGTGTGAAGGT+TGG	+	15132:44049-44068	MS.gene35857:CDS	50.0%
	TGGTTGGATCTCAAACCAGC+TGG	+	15132:43881-43900	MS.gene35857:CDS	50.0%
	TTGTGGTAGACGTGGATGCT+TGG	+	15132:43861-43880	MS.gene35857:CDS	50.0%
!	ACGGAGCAATAGCGGAAGAA+AGG	+	15132:43822-43841	MS.gene35857:CDS	50.0%
!	ATAGCGGAAGAAAGGACGCT+AGG	+	15132:43830-43849	MS.gene35857:CDS	50.0%
!!	GTTGAGATTCTGAGACGCAG+AGG	+	15132:44115-44134	MS.gene35857:CDS	50.0%
!!!	GACTCCAGAAGGTTTTGAGC+TGG	-	15132:43980-43999	None:intergenic	50.0%
	GGACCCTGAATTGCCACATG+AGG	-	15132:44079-44098	None:intergenic	55.0%
	GGTAGACGTGGATGCTTGGT+TGG	+	15132:43865-43884	MS.gene35857:CDS	55.0%
!!	TATGGGCCACTGACTCCAGA+AGG	-	15132:43991-44010	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
15132	gene	43752	44153	43752	ID=MS.gene35857
15132	mRNA	43752	44153	43752	ID=MS.gene35857.t1;Parent=MS.gene35857
15132	exon	43752	44153	43752	ID=MS.gene35857.t1.exon1;Parent=MS.gene35857.t1
15132	CDS	43752	44153	43752	ID=cds.MS.gene35857.t1;Parent=MS.gene35857.t1

Gene Sequence

>MS.gene35857

ATGGAAGGTGTTGATGCATTAATAGGGGGAGACAAACTTATTCTAAGGGGATTGACTTTCTATGGTTTTCACGGAGCAATAGCGGAAGAAAGGACGCTAGGACAGAAGTTTGTGGTAGACGTGGATGCTTGGTTGGATCTCAAACCAGCTGGAAAATCTGATAACTTGTCTGATTCTTTTAGTTACGCTGAAATATATCTTATAGCTAAGAAAGTTATTGAAGGACCAGCTCAAAACCTTCTGGAGTCAGTGGCCCATAAAATTGCAATCGCTACTTTGGAAGTTCAGAAAAAGATATCTGCTGTTCGTGTGAAGGTTGGAAAGCCTCATGTGGCAATTCAGGGTCCGGTTGATTACTTAGGCGTTGAGATTCTGAGACGCAGAGGCGATTTGACAGACTAG

Protein sequence

>MS.gene35857.t1

MEGVDALIGGDKLILRGLTFYGFHGAIAEERTLGQKFVVDVDAWLDLKPAGKSDNLSDSFSYAEIYLIAKKVIEGPAQNLLESVAHKIAIATLEVQKKISAVRVKVGKPHVAIQGPVDYLGVEILRRRGDLTD