AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35919

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35919.t1 MTR_5g072570 95.106 470 23 0 1 470 1 470 0.0 942
MS.gene35919.t1 MTR_3g090130 78.205 468 97 2 1 468 1 463 0.0 771
MS.gene35919.t1 MTR_3g090150 75.738 474 105 4 1 468 1 470 0.0 747
MS.gene35919.t1 MTR_7g021130 47.696 434 218 6 30 461 31 457 2.17e-142 416
MS.gene35919.t1 MTR_8g099930 46.347 438 228 5 28 463 32 464 3.41e-140 410
MS.gene35919.t1 MTR_3g498755 45.682 440 226 7 28 461 13 445 9.54e-139 406
MS.gene35919.t1 MTR_3g434850 46.288 458 228 7 9 461 10 454 3.72e-138 405
MS.gene35919.t1 MTR_2g449850 45.183 436 226 6 31 463 39 464 4.64e-129 382
MS.gene35919.t1 MTR_7g013790 42.227 476 244 9 6 465 8 468 1.51e-123 368
MS.gene35919.t1 MTR_3g034290 44.196 448 226 8 22 465 67 494 2.44e-122 366
MS.gene35919.t1 MTR_4g089155 42.609 460 234 11 19 463 43 487 5.85e-120 360
MS.gene35919.t1 MTR_4g075150 42.184 467 246 11 7 461 9 463 7.49e-119 356
MS.gene35919.t1 MTR_4g075150 42.457 464 247 11 7 461 9 461 7.76e-119 356
MS.gene35919.t1 MTR_3g079570 45.330 439 214 10 26 461 75 490 1.06e-118 357
MS.gene35919.t1 MTR_2g012860 42.825 446 233 7 28 462 40 474 2.26e-118 355
MS.gene35919.t1 MTR_0003s0560 44.218 441 226 7 22 461 66 487 4.64e-118 355
MS.gene35919.t1 MTR_3g079590 45.161 434 215 9 26 457 74 486 1.22e-117 354
MS.gene35919.t1 MTR_3g079560 44.045 445 224 9 22 463 70 492 7.21e-116 349
MS.gene35919.t1 MTR_2g012850 41.741 448 237 8 27 463 33 467 4.49e-115 347
MS.gene35919.t1 MTR_1g040370 40.682 440 204 6 28 462 29 416 5.43e-115 345
MS.gene35919.t1 MTR_3g079600 44.444 450 225 12 22 467 68 496 2.40e-114 345
MS.gene35919.t1 MTR_3g079620 42.070 454 226 12 26 467 74 502 2.43e-111 338
MS.gene35919.t1 MTR_1g095560 39.872 469 262 9 4 464 3 459 3.30e-111 336
MS.gene35919.t1 MTR_1g021010 43.707 437 217 11 30 462 76 487 4.62e-110 334
MS.gene35919.t1 MTR_3g079630 42.174 460 226 12 22 467 70 503 2.73e-109 333
MS.gene35919.t1 MTR_2g081620 38.248 468 269 9 9 468 15 470 8.09e-109 331
MS.gene35919.t1 MTR_1g020090 43.311 441 214 11 27 461 87 497 1.21e-108 331
MS.gene35919.t1 MTR_4g122950 38.351 485 254 12 9 464 12 480 1.24e-107 328
MS.gene35919.t1 MTR_2g063000 37.313 469 273 10 2 461 7 463 2.21e-107 327
MS.gene35919.t1 MTR_2g062990 40.046 432 244 9 33 461 43 462 3.95e-107 326
MS.gene35919.t1 MTR_1g021020 43.607 438 219 10 28 462 76 488 1.03e-106 326
MS.gene35919.t1 MTR_1g095540 40.136 441 248 8 27 463 30 458 8.79e-105 320
MS.gene35919.t1 MTR_1g095560 37.325 501 262 10 4 464 3 491 2.59e-104 320
MS.gene35919.t1 MTR_4g122960 37.552 482 260 13 9 464 12 478 5.86e-103 316
MS.gene35919.t1 MTR_2g062980 39.352 432 247 8 33 461 43 462 1.71e-102 314
MS.gene35919.t1 MTR_3g034290 43.855 358 181 7 22 375 67 408 3.22e-95 293
MS.gene35919.t1 MTR_1g102130 38.565 446 228 12 28 466 90 496 1.44e-93 292
MS.gene35919.t1 MTR_2g063000 33.476 466 264 11 2 461 7 432 3.81e-87 274
MS.gene35919.t1 MTR_0003s0560 48.496 266 128 4 22 286 66 323 1.64e-80 253
MS.gene35919.t1 MTR_7g051430 31.621 506 283 13 1 457 1 492 4.26e-76 247
MS.gene35919.t1 MTR_8g011350 31.388 497 278 13 9 457 11 492 8.11e-71 233
MS.gene35919.t1 MTR_7g080180 31.755 507 282 17 6 460 4 498 2.14e-70 232
MS.gene35919.t1 MTR_8g011350 30.867 473 264 13 9 433 11 468 6.43e-63 212
MS.gene35919.t1 MTR_0075s0010 32.737 391 187 10 26 409 4 325 1.01e-58 196
MS.gene35919.t1 MTR_7g080180 31.183 465 256 17 6 418 4 456 2.01e-58 199
MS.gene35919.t1 MTR_7g051430 37.201 293 170 7 1 287 1 285 7.98e-55 189
MS.gene35919.t1 MTR_2g018630 29.646 452 276 15 29 460 36 465 1.45e-51 181
MS.gene35919.t1 MTR_2g018600 27.655 452 292 14 29 460 33 469 4.41e-49 174
MS.gene35919.t1 MTR_2g018590 27.789 475 306 17 6 460 12 469 4.42e-48 172
MS.gene35919.t1 MTR_4g021510 29.019 479 280 19 6 456 19 465 1.37e-47 171
MS.gene35919.t1 MTR_4g021535 27.368 475 301 17 2 456 12 462 4.71e-46 166
MS.gene35919.t1 MTR_4g021520 27.354 446 286 15 30 456 40 466 1.80e-45 165
MS.gene35919.t1 MTR_4g021490 27.088 443 291 15 30 456 40 466 3.23e-45 164
MS.gene35919.t1 MTR_1g050545 29.861 432 256 13 41 457 81 480 1.28e-44 163
MS.gene35919.t1 MTR_4g021530 26.398 447 289 16 30 456 40 466 9.50e-44 160
MS.gene35919.t1 MTR_4g057585 27.107 439 271 12 35 457 87 492 3.02e-43 159
MS.gene35919.t1 MTR_4g057595 27.232 448 273 13 37 468 90 500 8.97e-43 158
MS.gene35919.t1 MTR_2g095750 27.465 426 282 12 40 460 97 500 2.29e-42 157
MS.gene35919.t1 MTR_3g100420 27.826 460 290 18 28 460 52 496 2.82e-42 157
MS.gene35919.t1 MTR_4g021500 27.477 444 284 18 30 454 40 464 4.07e-42 160
MS.gene35919.t1 MTR_4g021500 26.196 439 287 16 36 456 482 901 4.74e-37 145
MS.gene35919.t1 MTR_4g021500 27.477 444 284 18 30 454 40 464 4.70e-42 160
MS.gene35919.t1 MTR_4g021500 26.107 429 282 15 36 456 482 883 1.57e-35 140
MS.gene35919.t1 MTR_2g095730 26.667 435 273 13 40 458 91 495 6.91e-40 150
MS.gene35919.t1 MTR_1g094155 27.083 432 269 12 40 457 87 486 1.29e-39 149
MS.gene35919.t1 MTR_8g007520 91.549 71 6 0 346 416 111 181 1.70e-38 138
MS.gene35919.t1 MTR_4g057570 27.166 427 279 13 41 458 87 490 7.65e-38 144
MS.gene35919.t1 MTR_3g045770 25.114 438 301 12 29 454 26 448 1.01e-36 140
MS.gene35919.t1 MTR_4g057600 27.169 438 261 13 41 458 93 492 3.70e-36 140
MS.gene35919.t1 MTR_4g021520 26.961 408 260 15 30 418 40 428 4.16e-35 135
MS.gene35919.t1 MTR_2g018630 28.177 362 225 12 113 460 20 360 1.43e-34 133
MS.gene35919.t1 MTR_5g097180 25.829 422 270 12 45 455 43 432 7.89e-32 127
MS.gene35919.t1 MTR_4g021535 25.474 475 263 19 2 456 12 415 8.11e-32 126
MS.gene35919.t1 MTR_2g009200 25.828 453 269 16 28 456 26 435 1.46e-31 126
MS.gene35919.t1 MTR_4g084710 24.886 438 270 15 37 455 37 434 8.23e-31 124
MS.gene35919.t1 MTR_2g095710 25.792 442 270 16 34 460 85 483 3.65e-26 111
MS.gene35919.t1 MTR_1g051175 52.941 85 37 2 37 120 20 102 4.65e-21 93.2
MS.gene35919.t1 MTR_7g100560 27.962 211 86 3 36 246 65 209 2.54e-19 89.4
MS.gene35919.t1 MTR_4g056520 21.739 460 278 17 42 456 32 454 6.42e-17 83.2
MS.gene35919.t1 MTR_6g086380 74.419 43 11 0 422 464 58 100 3.86e-14 68.6
MS.gene35919.t1 MTR_2g102960 82.857 35 6 0 346 380 36 70 1.31e-11 63.2
MS.gene35919.t1 MTR_2g084530 31.579 190 109 6 46 230 36 209 6.28e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35919.t1 AT5G42240 78.667 450 96 0 20 469 23 472 0.0 770
MS.gene35919.t1 AT1G43780 69.409 474 138 3 2 468 4 477 0.0 716
MS.gene35919.t1 AT2G12480 71.491 456 122 3 7 462 11 458 0.0 696
MS.gene35919.t1 AT5G42230 71.018 452 131 0 13 464 12 463 0.0 695
MS.gene35919.t1 AT5G42230 71.018 452 131 0 13 464 12 463 0.0 695
MS.gene35919.t1 AT2G12480 67.763 456 115 4 7 462 11 434 0.0 644
MS.gene35919.t1 AT2G12480 67.325 456 115 4 7 462 11 432 0.0 639
MS.gene35919.t1 AT2G12480 67.177 457 115 5 7 462 11 433 0.0 635
MS.gene35919.t1 AT2G33530 48.630 438 216 6 28 462 32 463 6.10e-148 431
MS.gene35919.t1 AT1G28110 47.836 439 216 7 28 462 30 459 2.33e-142 416
MS.gene35919.t1 AT1G28110 47.836 439 216 7 28 462 30 459 2.33e-142 416
MS.gene35919.t1 AT3G02110 42.650 483 243 10 1 462 3 472 5.90e-121 362
MS.gene35919.t1 AT3G63470 43.371 445 234 9 22 465 74 501 1.44e-119 359
MS.gene35919.t1 AT2G24010 42.986 442 231 8 27 463 28 453 8.22e-119 355
MS.gene35919.t1 AT4G30610 42.729 447 234 9 27 463 30 464 4.03e-118 354
MS.gene35919.t1 AT2G24000 42.247 445 234 8 27 460 28 460 2.69e-116 350
MS.gene35919.t1 AT4G30810 41.685 463 251 9 6 460 10 461 8.20e-116 349
MS.gene35919.t1 AT5G08260 39.917 481 256 10 5 462 7 477 3.52e-115 347
MS.gene35919.t1 AT5G23210 40.741 459 234 10 28 461 50 495 5.58e-114 345
MS.gene35919.t1 AT2G24010 41.357 457 232 9 27 463 28 468 1.76e-113 342
MS.gene35919.t1 AT1G61130 41.099 455 246 9 15 457 12 456 3.62e-112 339
MS.gene35919.t1 AT2G35770 42.664 443 233 11 26 463 34 460 6.50e-112 338
MS.gene35919.t1 AT2G35780 41.364 440 238 9 27 461 27 451 1.50e-110 334
MS.gene35919.t1 AT3G07990 40.950 442 245 9 26 463 30 459 3.84e-110 333
MS.gene35919.t1 AT1G11080 40.576 451 235 9 27 457 48 485 4.73e-110 335
MS.gene35919.t1 AT1G11080 40.576 451 235 9 27 457 48 485 4.87e-110 334
MS.gene35919.t1 AT2G24010 38.958 480 232 10 29 463 1 464 1.67e-106 324
MS.gene35919.t1 AT4G15100 38.958 480 260 9 5 463 16 483 7.05e-105 321
MS.gene35919.t1 AT2G05850 39.865 444 242 8 27 463 61 486 1.24e-103 318
MS.gene35919.t1 AT3G52020 40.271 442 241 12 27 463 77 500 1.07e-101 313
MS.gene35919.t1 AT3G17180 38.852 453 248 10 28 463 37 477 1.89e-100 309
MS.gene35919.t1 AT3G52000 38.776 441 246 9 27 463 61 481 4.10e-100 308
MS.gene35919.t1 AT5G23210 39.855 414 212 9 28 416 50 451 1.96e-97 301
MS.gene35919.t1 AT3G52010 38.514 444 247 10 27 463 62 486 8.25e-97 300
MS.gene35919.t1 AT5G23210 38.142 409 215 10 78 461 5 400 6.61e-89 277
MS.gene35919.t1 AT5G23210 38.025 405 213 10 82 461 8 399 1.13e-87 274
MS.gene35919.t1 AT2G24010 40.054 367 189 7 29 375 1 356 2.34e-84 264
MS.gene35919.t1 AT3G17180 36.779 416 230 11 22 416 27 430 4.76e-81 258
MS.gene35919.t1 AT4G12910 32.220 509 281 16 1 460 4 497 1.22e-75 246
MS.gene35919.t1 AT5G23210 36.667 360 191 9 82 416 8 355 4.91e-71 229
MS.gene35919.t1 AT3G25420 31.020 490 282 11 16 460 16 494 1.77e-68 227
MS.gene35919.t1 AT4G12910 31.478 467 256 16 1 418 4 455 3.35e-62 209
MS.gene35919.t1 AT3G56540 50.267 187 90 3 7 192 57 241 1.06e-54 184
MS.gene35919.t1 AT2G24000 35.880 301 171 7 170 460 109 397 3.18e-51 179
MS.gene35919.t1 AT2G24000 55.556 90 39 1 27 115 28 117 1.27e-25 108
MS.gene35919.t1 AT1G73300 29.213 445 267 15 29 460 32 441 1.06e-50 178
MS.gene35919.t1 AT1G73300 29.213 445 267 15 29 460 32 441 1.06e-50 178
MS.gene35919.t1 AT1G33540 28.062 449 294 14 29 460 28 464 2.40e-50 178
MS.gene35919.t1 AT1G33540 28.140 430 281 13 47 460 4 421 1.89e-49 174
MS.gene35919.t1 AT2G22920 28.475 446 271 16 29 460 24 435 2.02e-49 175
MS.gene35919.t1 AT1G73270 28.733 442 273 15 29 460 32 441 8.77e-49 173
MS.gene35919.t1 AT1G73280 29.140 477 285 18 1 460 1 441 1.38e-48 172
MS.gene35919.t1 AT1G73270 28.733 442 273 15 29 460 32 441 1.39e-48 173
MS.gene35919.t1 AT5G36180 28.090 445 272 14 29 460 32 441 1.72e-48 172
MS.gene35919.t1 AT2G22980 27.803 446 268 15 29 460 25 430 1.98e-48 172
MS.gene35919.t1 AT5G09640 28.355 462 279 16 29 460 26 465 2.17e-48 173
MS.gene35919.t1 AT1G73290 28.054 442 274 14 29 460 31 438 4.94e-47 168
MS.gene35919.t1 AT1G73310 27.314 443 278 14 29 460 32 441 7.30e-47 168
MS.gene35919.t1 AT2G23000 27.828 442 281 15 29 460 24 437 7.86e-47 168
MS.gene35919.t1 AT2G23000 27.828 442 281 15 29 460 24 437 7.86e-47 168
MS.gene35919.t1 AT2G23010 28.541 466 287 17 10 460 3 437 9.66e-47 167
MS.gene35919.t1 AT2G22990 27.578 446 275 16 29 460 22 433 2.68e-46 166
MS.gene35919.t1 AT2G23010 28.326 466 288 17 10 460 3 437 3.68e-46 166
MS.gene35919.t1 AT3G12240 28.953 449 263 17 29 460 27 436 5.96e-46 166
MS.gene35919.t1 AT2G22970 28.153 444 273 15 29 460 24 433 7.96e-46 165
MS.gene35919.t1 AT2G22980 28.029 421 250 14 29 435 25 406 5.74e-45 162
MS.gene35919.t1 AT5G22980 28.271 428 270 12 40 458 95 494 5.90e-45 164
MS.gene35919.t1 AT3G45010 28.700 446 276 13 35 467 92 508 1.21e-44 164
MS.gene35919.t1 AT3G12230 28.571 448 266 16 29 460 26 435 1.23e-44 162
MS.gene35919.t1 AT2G22980 28.095 420 249 14 29 434 25 405 1.25e-44 162
MS.gene35919.t1 AT3G10450 28.090 445 272 15 29 460 28 437 2.62e-44 161
MS.gene35919.t1 AT3G12220 28.027 446 271 16 29 460 26 435 1.14e-43 159
MS.gene35919.t1 AT3G12203 27.419 434 280 11 33 460 12 416 2.31e-43 158
MS.gene35919.t1 AT3G12203 27.419 434 280 11 33 460 33 437 3.81e-43 158
MS.gene35919.t1 AT3G10450 27.700 426 261 14 47 460 4 394 1.71e-42 155
MS.gene35919.t1 AT3G12220 28.103 427 258 15 47 460 15 405 3.29e-42 155
MS.gene35919.t1 AT2G22990 27.619 420 257 15 29 434 22 408 9.15e-42 154
MS.gene35919.t1 AT2G22970 28.162 419 256 14 29 435 24 409 1.30e-41 153
MS.gene35919.t1 AT2G22990 27.316 421 259 14 29 435 22 409 1.30e-41 154
MS.gene35919.t1 AT2G22970 28.230 418 255 14 29 434 24 408 4.14e-41 152
MS.gene35919.t1 AT3G12203 27.451 408 262 10 58 460 1 379 7.29e-41 150
MS.gene35919.t1 AT2G22990 26.906 446 269 17 29 460 22 424 3.63e-40 149
MS.gene35919.t1 AT3G10450 28.095 420 255 14 29 435 28 413 4.89e-40 149
MS.gene35919.t1 AT2G22920 27.427 412 238 15 29 419 24 395 1.44e-39 147
MS.gene35919.t1 AT3G10410 26.957 460 280 13 18 464 85 501 5.88e-39 148
MS.gene35919.t1 AT3G10450 27.681 401 244 13 47 435 4 370 3.48e-38 143
MS.gene35919.t1 AT1G73310 26.368 402 253 13 29 419 32 401 8.57e-37 140
MS.gene35919.t1 AT1G73290 26.933 401 250 13 29 419 31 398 1.03e-36 139
MS.gene35919.t1 AT1G73280 31.438 299 183 10 1 286 1 290 1.32e-34 133
MS.gene35919.t1 AT2G22920 30.970 268 166 9 29 286 24 282 4.54e-34 130
MS.gene35919.t1 AT1G73290 32.743 226 137 6 29 244 31 251 3.28e-32 125
MS.gene35919.t1 AT2G22980 30.597 268 164 9 29 286 25 280 1.76e-31 124
MS.gene35919.t1 AT1G73280 27.171 357 219 12 111 460 17 339 2.35e-31 123
MS.gene35919.t1 AT5G36180 26.331 357 222 11 111 460 17 339 2.49e-31 123
MS.gene35919.t1 AT5G36180 26.331 357 222 11 111 460 17 339 2.49e-31 123
MS.gene35919.t1 AT2G22970 32.917 240 146 7 29 259 24 257 4.87e-31 122
MS.gene35919.t1 AT1G15000 35.912 181 109 3 37 214 29 205 1.01e-28 118
MS.gene35919.t1 AT1G73280 26.724 348 214 12 120 460 1 314 3.66e-28 114
MS.gene35919.t1 AT2G22990 25.641 351 220 13 118 460 2 319 1.01e-27 113
MS.gene35919.t1 AT2G22990 25.356 351 221 13 118 460 2 319 4.78e-27 111
MS.gene35919.t1 AT2G22980 25.767 326 196 11 118 435 2 289 8.35e-27 110
MS.gene35919.t1 AT5G36180 25.904 332 206 10 111 435 17 315 1.35e-26 110
MS.gene35919.t1 AT3G12220 30.734 218 136 6 29 236 26 238 3.23e-25 107
MS.gene35919.t1 AT5G22960 30.286 175 100 3 35 208 25 178 1.21e-23 98.2
MS.gene35919.t1 AT1G73310 24.841 314 200 10 111 419 17 299 4.19e-22 97.4
MS.gene35919.t1 AT5G36180 25.397 315 195 10 111 418 17 298 3.79e-21 94.7
MS.gene35919.t1 AT2G27920 26.415 265 150 9 42 284 33 274 4.97e-19 89.7
MS.gene35919.t1 AT2G22920 25.850 294 163 13 182 460 3 256 1.74e-17 82.4

Find 113 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCTCACTCTTTGGCTTAA+TGG 0.090755 5.1:-55813605 MS.gene35919:CDS
GAAACTTCTCGTACCATTTC+AGG 0.178588 5.1:+55812444 None:intergenic
GAGCACCATATGATTATTTC+TGG 0.211487 5.1:-55811808 MS.gene35919:CDS
TTCAAAACCGTATTCCAGTA+TGG 0.267358 5.1:-55811001 MS.gene35919:CDS
AAAATAAACCCCTCACTCTT+TGG 0.284368 5.1:-55813613 MS.gene35919:CDS
TCTCAGTTCTTGTTCAACTA+TGG 0.292611 5.1:+55811601 None:intergenic
AGGAGGTGCCTTTACTGAAT+TGG 0.300382 5.1:-55812902 MS.gene35919:CDS
GATCTGGTTGTTAGTCTTCC+TGG 0.309372 5.1:-55813740 MS.gene35919:CDS
GGAATGATTTCAGATGAAAT+TGG 0.326242 5.1:-55811779 MS.gene35919:CDS
TCCAGAGCGTTGTTTCTTAC+CGG 0.327019 5.1:-55812410 MS.gene35919:CDS
TATTGACTGAATTCAACTTT+AGG 0.341208 5.1:+55813713 None:intergenic
TGCTTTCGTTCTTCCTGAAA+TGG 0.343523 5.1:-55812457 MS.gene35919:CDS
CTCTTTATTGAGTCTCCTGC+TGG 0.357375 5.1:-55812691 MS.gene35919:CDS
GGAGGTTGGGCAACTGAGTA+TGG 0.366756 5.1:-55810247 MS.gene35919:CDS
GGAGGTGCCTTTACTGAATT+GGG 0.367283 5.1:-55812901 MS.gene35919:CDS
GGACTGTAATCTTGAACTTC+AGG 0.367870 5.1:+55810619 None:intergenic
ATTGGAAGCATATTAATGTT+AGG 0.368350 5.1:+55811038 None:intergenic
TGAACAATCCGTTTGAGAAT+TGG 0.369737 5.1:+55811020 None:intergenic
GATTCCGTTGTGCCATTACT+AGG 0.370360 5.1:-55810675 MS.gene35919:CDS
AAATAATTACCTGGCCTTTG+TGG 0.380863 5.1:+55810580 None:intergenic
CTAACAACCAGATCCTCAAT+AGG 0.380884 5.1:+55813749 None:intergenic
CTCGTCACCGATGTTGTAAT+CGG 0.389457 5.1:+55812639 None:intergenic
TTTCAAATTGAACTTGTAAC+CGG 0.392444 5.1:+55811984 None:intergenic
AAAATTGATACCTCTATTCC+AGG 0.400614 5.1:+55812828 None:intergenic
GCTCTAGAAGGTTGTGCATA+TGG 0.402187 5.1:+55810178 None:intergenic
AAACAACGCTCTGGATTTGT+AGG 0.402525 5.1:+55812418 None:intergenic
CCTGGTTGTTCTTCCGTTGG+AGG 0.405009 5.1:-55812922 MS.gene35919:CDS
ACAACAAGACCTTCAATTGA+TGG 0.411072 5.1:-55810109 MS.gene35919:CDS
GTACCAACTTGCCGTATTCA+TGG 0.415219 5.1:-55811370 MS.gene35919:CDS
AGGGTACCCTATTGAGGATC+TGG 0.425537 5.1:-55813756 MS.gene35919:CDS
ATTGAAGGTCTTGTTGTGTT+TGG 0.428205 5.1:+55810115 None:intergenic
GTAATGGCACAACGGAATCT+TGG 0.430159 5.1:+55810679 None:intergenic
TTTATTCATCCATCAATTGA+AGG 0.432413 5.1:+55810100 None:intergenic
TCGAACGCTCATTCGTGAAC+TGG 0.435177 5.1:-55810649 MS.gene35919:CDS
CTTTGCAATCTGCTAGTTGA+AGG 0.438085 5.1:-55813776 MS.gene35919:CDS
AGACTCAATAAAGAGAAGAT+TGG 0.442329 5.1:+55812699 None:intergenic
AATTACCTGAAAACCCATAC+TGG 0.452422 5.1:+55810987 None:intergenic
CAACCTCCCTGAGGTTCAAA+AGG 0.453733 5.1:-55811408 MS.gene35919:CDS
TTGTGGAACCAAGCTCCATA+TGG 0.454668 5.1:+55810597 None:intergenic
GGTCCTGGTTGTTCTTCCGT+TGG 0.459552 5.1:-55812925 MS.gene35919:CDS
AACAGATGCAGTGCTCTAGA+AGG 0.459934 5.1:+55810166 None:intergenic
TACGAAAGAATTCAATGTCC+TGG 0.463993 5.1:-55812846 MS.gene35919:CDS
GTTAACTTTCGCCACCGTGC+GGG 0.467382 5.1:-55810218 MS.gene35919:CDS
ATTGAGTCTCCTGCTGGAGT+TGG 0.467432 5.1:-55812685 MS.gene35919:CDS
ATATGCTTCCAATTCTCAAA+CGG 0.470413 5.1:-55811028 MS.gene35919:CDS
CTGCACATGGACCATGAATA+CGG 0.472089 5.1:+55811359 None:intergenic
CAGGCTACTAAAATAAGTAT+AGG 0.472450 5.1:-55811470 MS.gene35919:CDS
AATTCAATGTCCTGGAATAG+AGG 0.472547 5.1:-55812838 MS.gene35919:intron
TTCAAGATTACAGTCCCATA+TGG 0.472759 5.1:-55810612 MS.gene35919:CDS
CTATGTGTAGGTTGGAGGTT+GGG 0.476731 5.1:-55810260 MS.gene35919:intron
CTGTTCAGTAACTTTGTGAA+TGG 0.483667 5.1:-55810148 MS.gene35919:CDS
TGGACCTGCATAGCTTTCTC+CGG 0.483807 5.1:+55812391 None:intergenic
CATGATGCAGATACATTATG+AGG 0.484701 5.1:+55811707 None:intergenic
AACTAGCAGATTGCAAAGAT+AGG 0.487129 5.1:+55813781 None:intergenic
GAATTACAATGGCACAGTAT+TGG 0.487226 5.1:-55813829 None:intergenic
GAAGAACGAAAGCATATCAT+TGG 0.488029 5.1:+55812466 None:intergenic
AGTGATGCAAATGAAGTTGT+CGG 0.492780 5.1:-55811671 MS.gene35919:CDS
TCCGGTAAGAAACAACGCTC+TGG 0.495399 5.1:+55812409 None:intergenic
TGTGACCAGAAATAATCATA+TGG 0.497544 5.1:+55811803 None:intergenic
TCAGTAACTTTGTGAATGGT+AGG 0.501716 5.1:-55810144 MS.gene35919:CDS
GGTTGTTCTTCCGTTGGAGG+AGG 0.506091 5.1:-55812919 MS.gene35919:CDS
CCATCACCAGTAGGATAAAA+CGG 0.509390 5.1:+55812877 None:intergenic
TGAAAACCCATACTGGAATA+CGG 0.509668 5.1:+55810994 None:intergenic
TCAAAACCGTATTCCAGTAT+GGG 0.511117 5.1:-55811000 MS.gene35919:CDS
GGTTACAAGTTCAATTTGAA+AGG 0.512302 5.1:-55811982 MS.gene35919:CDS
GTTGAATTCAGTCAATATGC+TGG 0.514110 5.1:-55813707 MS.gene35919:CDS
AGTTCTTGTTCAACTATGGA+TGG 0.514324 5.1:+55811605 None:intergenic
TCCATTAAGCCAAAGAGTGA+GGG 0.516289 5.1:+55813604 None:intergenic
TTACAGTCCCATATGGAGCT+TGG 0.523649 5.1:-55810605 MS.gene35919:CDS
CTTACCGGAGAAAGCTATGC+AGG 0.524600 5.1:-55812395 MS.gene35919:intron
TGTGGAACCAAGCTCCATAT+GGG 0.530718 5.1:+55810598 None:intergenic
TAACAACCAGATCCTCAATA+GGG 0.533256 5.1:+55813750 None:intergenic
CATATCTATGTGTAGGTTGG+AGG 0.535597 5.1:-55810265 MS.gene35919:intron
TATCCTACTGGTGATGGACG+TGG 0.538754 5.1:-55812871 MS.gene35919:CDS
AGTCTCCTGCTGGAGTTGGT+TGG 0.541071 5.1:-55812681 MS.gene35919:CDS
AGTTGAAGGGTACCCTATTG+AGG 0.549321 5.1:-55813762 MS.gene35919:CDS
TTAACTTTCGCCACCGTGCG+GGG 0.550282 5.1:-55810217 MS.gene35919:CDS
TTTGCAATCTGCTAGTTGAA+GGG 0.556691 5.1:-55813775 MS.gene35919:CDS
TTATACTTACCCACTGCACA+TGG 0.557753 5.1:+55811346 None:intergenic
GCAAGTTGGTACGGTTCGCA+TGG 0.558199 5.1:+55811381 None:intergenic
TCTATGTGTAGGTTGGAGGT+TGG 0.559649 5.1:-55810261 MS.gene35919:intron
AACTTCATTTGCATCACTGA+TGG 0.561383 5.1:+55811676 None:intergenic
TATGACCAACCAACTCCAGC+AGG 0.564584 5.1:+55812676 None:intergenic
TATTCATGGTCCATGTGCAG+TGG 0.566051 5.1:-55811356 MS.gene35919:CDS
CTCGATCCAGATTCAAAAGT+GGG 0.567933 5.1:+55811837 None:intergenic
CGTGCGGGGTGCATCTCACA+TGG 0.568257 5.1:-55810203 MS.gene35919:CDS
AAACGGACCCAATTCAGTAA+AGG 0.578441 5.1:+55812894 None:intergenic
AGCTTGGTTCCACAAAGGCC+AGG 0.580658 5.1:-55810589 MS.gene35919:intron
ATGAATACGGCAAGTTGGTA+CGG 0.581357 5.1:+55811372 None:intergenic
CTCCATTAAGCCAAAGAGTG+AGG 0.581909 5.1:+55813603 None:intergenic
CGATTACAACATCGGTGACG+AGG 0.590138 5.1:-55812638 MS.gene35919:CDS
AATTCAACTTTAGGTTGACC+AGG 0.595792 5.1:+55813722 None:intergenic
TCTCGATCCAGATTCAAAAG+TGG 0.599175 5.1:+55811836 None:intergenic
TATGATTATTTCTGGTCACA+TGG 0.601807 5.1:-55811800 MS.gene35919:CDS
CTCACTCTTTGGCTTAATGG+AGG 0.603231 5.1:-55813602 MS.gene35919:intron
CCTCCAACGGAAGAACAACC+AGG 0.604280 5.1:+55812922 None:intergenic
GGACCATGAATACGGCAAGT+TGG 0.604501 5.1:+55811367 None:intergenic
AGTAAAGGCACCTCCTCCAA+CGG 0.608931 5.1:+55812909 None:intergenic
TACATTATGAGGAGATGCGA+AGG 0.615123 5.1:+55811718 None:intergenic
ATTCATGGTCCATGTGCAGT+GGG 0.615927 5.1:-55811355 MS.gene35919:intron
TGTTAACTTTCGCCACCGTG+CGG 0.616872 5.1:-55810219 MS.gene35919:CDS
AACGCTCTGGATTTGTAGGT+AGG 0.617990 5.1:+55812422 None:intergenic
ACAACTTCCGATTACAACAT+CGG 0.619469 5.1:-55812646 MS.gene35919:CDS
AACATCGGTGACGAGGCCAC+AGG 0.633390 5.1:-55812631 MS.gene35919:intron
CCATTAAGCCAAAGAGTGAG+GGG 0.635706 5.1:+55813605 None:intergenic
AGCGTTCGAGAACCTAGTAA+TGG 0.641706 5.1:+55810663 None:intergenic
AGAATAGCATTAGCTAACTG+AGG 0.658804 5.1:+55812027 None:intergenic
CATGTGAGATGCACCCCGCA+CGG 0.659786 5.1:+55810204 None:intergenic
GTTGATATTGATGTAAAACA+TGG 0.675625 5.1:-55813680 MS.gene35919:CDS
ACACCACGTCCATCACCAGT+AGG 0.679633 5.1:+55812868 None:intergenic
TATGGAGCTTGGTTCCACAA+AGG 0.680414 5.1:-55810594 MS.gene35919:CDS
GTGAGATGCACCCCGCACGG+TGG 0.715495 5.1:+55810207 None:intergenic
AGAACCTAGTAATGGCACAA+CGG 0.721630 5.1:+55810671 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATAATTAAAATT+GGG + chr5.1:55811580-55811599 None:intergenic 0.0%
!!! AGTTTTTATTTTTTGTAAAT+CGG - chr5.1:55810887-55810906 MS.gene35919:intron 10.0%
!! AAGTTAGTTATAAATTAGTT+AGG - chr5.1:55813051-55813070 MS.gene35919:intron 15.0%
!! AATATAAGATATCATATGAA+TGG + chr5.1:55811985-55812004 None:intergenic 15.0%
!! AGATAATAAAAATAGAAAAG+AGG + chr5.1:55811799-55811818 None:intergenic 15.0%
!! ATACTTTATAATGTTTATTC+AGG - chr5.1:55811866-55811885 MS.gene35919:intron 15.0%
!! ATATAAGATATCATATGAAT+GGG + chr5.1:55811984-55812003 None:intergenic 15.0%
!! ATTGATATTAGAGAATAATT+TGG - chr5.1:55811148-55811167 MS.gene35919:intron 15.0%
!! GATAAAGTATAGTATTTATA+GGG + chr5.1:55813085-55813104 None:intergenic 15.0%
!! TGATAAAGTATAGTATTTAT+AGG + chr5.1:55813086-55813105 None:intergenic 15.0%
!! TTCATATGATATCTTATATT+TGG - chr5.1:55811985-55812004 MS.gene35919:CDS 15.0%
!! TTGATATTAGAGAATAATTT+GGG - chr5.1:55811149-55811168 MS.gene35919:intron 15.0%
!!! ATAATCCTTTAATTTGTTTT+TGG - chr5.1:55811434-55811453 MS.gene35919:CDS 15.0%
!! AACTGTTAAAAATAATTACC+TGG + chr5.1:55813358-55813377 None:intergenic 20.0%
!! AGTGTTTAATTAAGAAATCT+GGG - chr5.1:55812014-55812033 MS.gene35919:CDS 20.0%
!! GTAAACACAATATTAAAATC+AGG + chr5.1:55811189-55811208 None:intergenic 20.0%
!! GTATAAATTAAATAGCCAAT+TGG + chr5.1:55812982-55813001 None:intergenic 20.0%
!! TAAAATTCAAATTGCATGTT+TGG + chr5.1:55810591-55810610 None:intergenic 20.0%
!! TAGTATAATAGAAATGAAAG+AGG + chr5.1:55812374-55812393 None:intergenic 20.0%
!! TTAGTTATAAATTAGTTAGG+TGG - chr5.1:55813054-55813073 MS.gene35919:intron 20.0%
!! TTTATGTATGTTTGAATTGA+CGG - chr5.1:55810479-55810498 MS.gene35919:intron 20.0%
!!! AGTAACTTTGTTAATTTTTC+AGG - chr5.1:55810980-55810999 MS.gene35919:intron 20.0%
!!! ATTTTGATTATTATTGTTGC+TGG - chr5.1:55810388-55810407 MS.gene35919:intron 20.0%
!!! GGTATCAATTTTGTTTATTA+TGG - chr5.1:55811109-55811128 MS.gene35919:intron 20.0%
!!! TTTGTTAGTTTTATAATGCA+TGG - chr5.1:55811409-55811428 MS.gene35919:CDS 20.0%
!!! TTTTACATGTTGTTATCTTT+TGG - chr5.1:55810606-55810625 MS.gene35919:CDS 20.0%
!!! TTTTATTTTTTGTAAATCGG+CGG - chr5.1:55810890-55810909 MS.gene35919:intron 20.0%
! AAAATTGTTCATGAGAACAA+AGG + chr5.1:55811833-55811852 None:intergenic 25.0%
! AGAAATGATCAATAGAGATT+TGG + chr5.1:55813167-55813186 None:intergenic 25.0%
! ATAACCATACTATAGAATAC+TGG + chr5.1:55813411-55813430 None:intergenic 25.0%
! ATATTTCGAAATGCAGAAAA+TGG + chr5.1:55813384-55813403 None:intergenic 25.0%
! ATCTCTCTCAATTAATATAC+AGG + chr5.1:55810955-55810974 None:intergenic 25.0%
! CCAAGAATTGTAGAAAATAA+CGG + chr5.1:55813601-55813620 None:intergenic 25.0%
! GAGTGTTTAATTAAGAAATC+TGG - chr5.1:55812013-55812032 MS.gene35919:CDS 25.0%
! GTGTTAAATTATTATGACAG+TGG - chr5.1:55813221-55813240 MS.gene35919:intron 25.0%
! GTTGATATTGATGTAAAACA+TGG - chr5.1:55810246-55810265 MS.gene35919:CDS 25.0%
! TGTCGCTAATAATAGTTTAT+GGG + chr5.1:55812623-55812642 None:intergenic 25.0%
! TTTCAAATTGAACTTGTAAC+CGG + chr5.1:55811945-55811964 None:intergenic 25.0%
!! AAGATGATATCTCTAGTTTA+TGG + chr5.1:55812654-55812673 None:intergenic 25.0%
!! AGATGATATCTCTAGTTTAT+GGG + chr5.1:55812653-55812672 None:intergenic 25.0%
!! ATTGGAAGCATATTAATGTT+AGG + chr5.1:55812891-55812910 None:intergenic 25.0%
!! TATTGACTGAATTCAACTTT+AGG + chr5.1:55810216-55810235 None:intergenic 25.0%
!!! ATGATTAGCTTCTTAGTAAT+CGG + chr5.1:55813201-55813220 None:intergenic 25.0%
AAAATTGATACCTCTATTCC+AGG + chr5.1:55811101-55811120 None:intergenic 30.0%
AAAGTTTAAATCAGTACCTG+TGG + chr5.1:55811314-55811333 None:intergenic 30.0%
AAGTCCAGTATTCTATAGTA+TGG - chr5.1:55813404-55813423 MS.gene35919:intron 30.0%
ACAACACAATCTGAATTTGT+AGG + chr5.1:55810696-55810715 None:intergenic 30.0%
AGAACTGAGATTGAAAAAGA+TGG - chr5.1:55812338-55812357 MS.gene35919:intron 30.0%
AGACTCAATAAAGAGAAGAT+TGG + chr5.1:55811230-55811249 None:intergenic 30.0%
AGTATAGCATCTTTCATGTA+AGG + chr5.1:55810837-55810856 None:intergenic 30.0%
ATATGCTTCCAATTCTCAAA+CGG - chr5.1:55812898-55812917 MS.gene35919:CDS 30.0%
CAAATTCAAATCCTGTTACA+AGG - chr5.1:55810922-55810941 MS.gene35919:intron 30.0%
CAACACAATCTGAATTTGTA+GGG + chr5.1:55810695-55810714 None:intergenic 30.0%
CAGGCTACTAAAATAAGTAT+AGG - chr5.1:55812456-55812475 MS.gene35919:CDS 30.0%
GGAATGATTTCAGATGAAAT+TGG - chr5.1:55812147-55812166 MS.gene35919:intron 30.0%
GGTTACAAGTTCAATTTGAA+AGG - chr5.1:55811944-55811963 MS.gene35919:intron 30.0%
GTTTCGAAATTCTCAAAAGT+TGG - chr5.1:55811601-55811620 MS.gene35919:CDS 30.0%
TCGAACAAAATCAACATGTA+AGG + chr5.1:55812710-55812729 None:intergenic 30.0%
TGCATAAAGAATACAATACG+AGG + chr5.1:55811686-55811705 None:intergenic 30.0%
TGTGACCAGAAATAATCATA+TGG + chr5.1:55812126-55812145 None:intergenic 30.0%
TTATGAGATACGCTATTTAG+CGG - chr5.1:55813541-55813560 MS.gene35919:intron 30.0%
TTGATTGCATATCTATGTGT+AGG - chr5.1:55813654-55813673 MS.gene35919:CDS 30.0%
TTTCAACAAAAGAGACCAAT+TGG - chr5.1:55812964-55812983 MS.gene35919:intron 30.0%
TTTGACAAGAACAGAATCTA+TGG - chr5.1:55810750-55810769 MS.gene35919:intron 30.0%
! AAAATCGCAGTCTTTTGTAA+TGG + chr5.1:55812178-55812197 None:intergenic 30.0%
! GATCTGATTAATGTGTCTTT+TGG + chr5.1:55811558-55811577 None:intergenic 30.0%
! GTGTCGCTAATAATAGTTTA+TGG + chr5.1:55812624-55812643 None:intergenic 30.0%
!! CCGTTATTTTCTACAATTCT+TGG - chr5.1:55813598-55813617 MS.gene35919:intron 30.0%
!! GATTTTAATGCTCATTCAAC+CGG - chr5.1:55811923-55811942 MS.gene35919:intron 30.0%
!! TATGATTATTTCTGGTCACA+TGG - chr5.1:55812126-55812145 MS.gene35919:intron 30.0%
!!! GTAATCTAAGCTTTTTTCTC+TGG - chr5.1:55812049-55812068 MS.gene35919:intron 30.0%
!!! TTTGTTAATTTTTCAGGTCC+TGG - chr5.1:55810986-55811005 MS.gene35919:intron 30.0%
AAAACTTGTAAGGAGTCGTT+CGG + chr5.1:55813128-55813147 None:intergenic 35.0%
AAAATAAACCCCTCACTCTT+TGG - chr5.1:55810313-55810332 MS.gene35919:intron 35.0%
AACTAGCAGATTGCAAAGAT+AGG + chr5.1:55810148-55810167 None:intergenic 35.0%
AACTTCATTTGCATCACTGA+TGG + chr5.1:55812253-55812272 None:intergenic 35.0%
AATATCCCAGTTAGCAATGA+TGG + chr5.1:55811726-55811745 None:intergenic 35.0%
AATTACCTGAAAACCCATAC+TGG + chr5.1:55812942-55812961 None:intergenic 35.0%
AATTCAATGTCCTGGAATAG+AGG - chr5.1:55811088-55811107 MS.gene35919:intron 35.0%
ACAACAAGACCTTCAATTGA+TGG - chr5.1:55813817-55813836 MS.gene35919:CDS 35.0%
ACAACTTCCGATTACAACAT+CGG - chr5.1:55811280-55811299 MS.gene35919:intron 35.0%
AGAATAGCATTAGCTAACTG+AGG + chr5.1:55811902-55811921 None:intergenic 35.0%
AGTGATGCAAATGAAGTTGT+CGG - chr5.1:55812255-55812274 MS.gene35919:intron 35.0%
AGTTCTTGTTCAACTATGGA+TGG + chr5.1:55812324-55812343 None:intergenic 35.0%
CATGATGCAGATACATTATG+AGG + chr5.1:55812222-55812241 None:intergenic 35.0%
CTGTTCAGTAACTTTGTGAA+TGG - chr5.1:55813778-55813797 MS.gene35919:CDS 35.0%
GAGAGTGAGTAAAACTTGTA+AGG + chr5.1:55813138-55813157 None:intergenic 35.0%
GAGCACCATATGATTATTTC+TGG - chr5.1:55812118-55812137 MS.gene35919:intron 35.0%
GCATCTTTCATGTAAGGTAA+AGG + chr5.1:55810831-55810850 None:intergenic 35.0%
GGCTGCCAAAAACAAATTAA+AGG + chr5.1:55811442-55811461 None:intergenic 35.0%
GTTGAATTCAGTCAATATGC+TGG - chr5.1:55810219-55810238 MS.gene35919:CDS 35.0%
TAACAACCAGATCCTCAATA+GGG + chr5.1:55810179-55810198 None:intergenic 35.0%
TACGAAAGAATTCAATGTCC+TGG - chr5.1:55811080-55811099 MS.gene35919:intron 35.0%
TCAAAACCGTATTCCAGTAT+GGG - chr5.1:55812926-55812945 MS.gene35919:CDS 35.0%
TCAGTAACTTTGTGAATGGT+AGG - chr5.1:55813782-55813801 MS.gene35919:CDS 35.0%
TCGTCACTGTTGTCAAATAA+AGG - chr5.1:55813472-55813491 MS.gene35919:intron 35.0%
TCTCAGTTCTTGTTCAACTA+TGG + chr5.1:55812328-55812347 None:intergenic 35.0%
TGAAAACCCATACTGGAATA+CGG + chr5.1:55812935-55812954 None:intergenic 35.0%
TGAACAATCCGTTTGAGAAT+TGG + chr5.1:55812909-55812928 None:intergenic 35.0%
TTCAAAACCGTATTCCAGTA+TGG - chr5.1:55812925-55812944 MS.gene35919:CDS 35.0%
TTCAAGATTACAGTCCCATA+TGG - chr5.1:55813314-55813333 MS.gene35919:intron 35.0%
TTGCATATCTATGTGTAGGT+TGG - chr5.1:55813658-55813677 MS.gene35919:CDS 35.0%
TTTGCAATCTGCTAGTTGAA+GGG - chr5.1:55810151-55810170 MS.gene35919:CDS 35.0%
! AAATAATTACCTGGCCTTTG+TGG + chr5.1:55813349-55813368 None:intergenic 35.0%
! ACTCCAGTTTTCCAAATCAA+CGG - chr5.1:55813443-55813462 MS.gene35919:intron 35.0%
! ATTAGCTTCTTAGTAATCGG+AGG + chr5.1:55813198-55813217 None:intergenic 35.0%
! GAAGAACGAAAGCATATCAT+TGG + chr5.1:55811463-55811482 None:intergenic 35.0%
! TACAAGTTTTACTCACTCTC+AGG - chr5.1:55813138-55813157 MS.gene35919:intron 35.0%
!! AATTCAACTTTAGGTTGACC+AGG + chr5.1:55810207-55810226 None:intergenic 35.0%
!! ATTGAAGGTCTTGTTGTGTT+TGG + chr5.1:55813814-55813833 None:intergenic 35.0%
!! TTTCTCTGGCTTTGTTAGAT+TGG - chr5.1:55812063-55812082 MS.gene35919:intron 35.0%
AAACGGACCCAATTCAGTAA+AGG + chr5.1:55811035-55811054 None:intergenic 40.0%
AGAACCTAGTAATGGCACAA+CGG + chr5.1:55813258-55813277 None:intergenic 40.0%
CCATCACCAGTAGGATAAAA+CGG + chr5.1:55811052-55811071 None:intergenic 40.0%
CGGTGAGTTTACCAAAATCA+CGG - chr5.1:55810499-55810518 MS.gene35919:intron 40.0%
CTAACAACCAGATCCTCAAT+AGG + chr5.1:55810180-55810199 None:intergenic 40.0%
CTATGCCATCATTGCTAACT+GGG - chr5.1:55811718-55811737 MS.gene35919:CDS 40.0%
CTCGATCCAGATTCAAAAGT+GGG + chr5.1:55812092-55812111 None:intergenic 40.0%
CTTTGCAATCTGCTAGTTGA+AGG - chr5.1:55810150-55810169 MS.gene35919:CDS 40.0%
GAAACTTCTCGTACCATTTC+AGG + chr5.1:55811485-55811504 None:intergenic 40.0%
GGACTGTAATCTTGAACTTC+AGG + chr5.1:55813310-55813329 None:intergenic 40.0%
TACATTATGAGGAGATGCGA+AGG + chr5.1:55812211-55812230 None:intergenic 40.0%
TCCATTAAGCCAAAGAGTGA+GGG + chr5.1:55810325-55810344 None:intergenic 40.0%
TCTCGATCCAGATTCAAAAG+TGG + chr5.1:55812093-55812112 None:intergenic 40.0%
TGCTTTCGTTCTTCCTGAAA+TGG - chr5.1:55811469-55811488 MS.gene35919:CDS 40.0%
TTATACTTACCCACTGCACA+TGG + chr5.1:55812583-55812602 None:intergenic 40.0%
TTCGTCTATTTCGTTACTGC+AGG - chr5.1:55812437-55812456 MS.gene35919:CDS 40.0%
! AAACAACGCTCTGGATTTGT+AGG + chr5.1:55811511-55811530 None:intergenic 40.0%
! ATTTTACTTCAACCTCCCTG+AGG - chr5.1:55812509-55812528 MS.gene35919:intron 40.0%
! CATATCTATGTGTAGGTTGG+AGG - chr5.1:55813661-55813680 MS.gene35919:CDS 40.0%
! GCTACAACATTGTAGCTTTG+CGG - chr5.1:55813565-55813584 MS.gene35919:intron 40.0%
! GTATTCCAGTATGGGTTTTC+AGG - chr5.1:55812934-55812953 MS.gene35919:intron 40.0%
! TCACAGTACAACCGTGATTT+TGG + chr5.1:55810513-55810532 None:intergenic 40.0%
!! ATGAATACGGCAAGTTGGTA+CGG + chr5.1:55812557-55812576 None:intergenic 40.0%
!!! AGAGTGAGGGGTTTATTTTG+AGG + chr5.1:55810312-55810331 None:intergenic 40.0%
AGCGTTCGAGAACCTAGTAA+TGG + chr5.1:55813266-55813285 None:intergenic 45.0%
ATAGTGACGCTAATGCGTAG+TGG - chr5.1:55813497-55813516 MS.gene35919:intron 45.0%
ATTCATGGTCCATGTGCAGT+GGG - chr5.1:55812571-55812590 MS.gene35919:intron 45.0%
CCAGTTAGCAATGATGGCAT+AGG + chr5.1:55811720-55811739 None:intergenic 45.0%
CCATTAAGCCAAAGAGTGAG+GGG + chr5.1:55810324-55810343 None:intergenic 45.0%
CCTATGCCATCATTGCTAAC+TGG - chr5.1:55811717-55811736 MS.gene35919:CDS 45.0%
CTCCATTAAGCCAAAGAGTG+AGG + chr5.1:55810326-55810345 None:intergenic 45.0%
CTCGTCACCGATGTTGTAAT+CGG + chr5.1:55811290-55811309 None:intergenic 45.0%
CTCTTTATTGAGTCTCCTGC+TGG - chr5.1:55811235-55811254 MS.gene35919:intron 45.0%
CTGCACATGGACCATGAATA+CGG + chr5.1:55812570-55812589 None:intergenic 45.0%
GTAATGGCACAACGGAATCT+TGG + chr5.1:55813250-55813269 None:intergenic 45.0%
GTACCAACTTGCCGTATTCA+TGG - chr5.1:55812556-55812575 MS.gene35919:intron 45.0%
TATGGAGCTTGGTTCCACAA+AGG - chr5.1:55813332-55813351 MS.gene35919:intron 45.0%
TATTCATGGTCCATGTGCAG+TGG - chr5.1:55812570-55812589 MS.gene35919:intron 45.0%
TGTGGAACCAAGCTCCATAT+GGG + chr5.1:55813331-55813350 None:intergenic 45.0%
TTACAGTCCCATATGGAGCT+TGG - chr5.1:55813321-55813340 MS.gene35919:intron 45.0%
TTGTGGAACCAAGCTCCATA+TGG + chr5.1:55813332-55813351 None:intergenic 45.0%
! AACAGATGCAGTGCTCTAGA+AGG + chr5.1:55813763-55813782 None:intergenic 45.0%
! AACGCTCTGGATTTGTAGGT+AGG + chr5.1:55811507-55811526 None:intergenic 45.0%
! AGCTTTTGTCCAAATCGCAG+TGG - chr5.1:55810541-55810560 MS.gene35919:intron 45.0%
! CAGGTTATGAGCCTTGTAAC+AGG + chr5.1:55810936-55810955 None:intergenic 45.0%
! CCAGTTTTCCAAATCAACGG+TGG - chr5.1:55813446-55813465 MS.gene35919:intron 45.0%
! CCGTTTTATCCTACTGGTGA+TGG - chr5.1:55811049-55811068 MS.gene35919:CDS 45.0%
! CGCAGTCTTTTGTAATGGCA+AGG + chr5.1:55812173-55812192 None:intergenic 45.0%
! CTATGTGTAGGTTGGAGGTT+GGG - chr5.1:55813666-55813685 MS.gene35919:CDS 45.0%
! CTCACTCTTTGGCTTAATGG+AGG - chr5.1:55810324-55810343 MS.gene35919:intron 45.0%
! GACGAAAACCACCGTTGATT+TGG + chr5.1:55813457-55813476 None:intergenic 45.0%
! GATTCCGTTGTGCCATTACT+AGG - chr5.1:55813251-55813270 MS.gene35919:intron 45.0%
! TCTATGTGTAGGTTGGAGGT+TGG - chr5.1:55813665-55813684 MS.gene35919:CDS 45.0%
! TTGGGTCCGTTTTATCCTAC+TGG - chr5.1:55811043-55811062 MS.gene35919:CDS 45.0%
!! AGGAGGTGCCTTTACTGAAT+TGG - chr5.1:55811024-55811043 MS.gene35919:CDS 45.0%
!! AGTTGAAGGGTACCCTATTG+AGG - chr5.1:55810164-55810183 MS.gene35919:CDS 45.0%
!! CCACCGTTGATTTGGAAAAC+TGG + chr5.1:55813449-55813468 None:intergenic 45.0%
!! GATCTGGTTGTTAGTCTTCC+TGG - chr5.1:55810186-55810205 MS.gene35919:CDS 45.0%
!! GCTCTAGAAGGTTGTGCATA+TGG + chr5.1:55813751-55813770 None:intergenic 45.0%
!! GGAGGTGCCTTTACTGAATT+GGG - chr5.1:55811025-55811044 MS.gene35919:CDS 45.0%
!! TCCAGAGCGTTGTTTCTTAC+CGG - chr5.1:55811516-55811535 MS.gene35919:intron 45.0%
!! TGGCAACCCACTTTTGAATC+TGG - chr5.1:55812083-55812102 MS.gene35919:intron 45.0%
!! GATAAATTAATAATTAAAAT+TGG + chr5.1:55811581-55811600 None:intergenic 5.0%
!!! TTTTTATGATTTTTTTTTTT+TGG - chr5.1:55810455-55810474 MS.gene35919:intron 5.0%
ATTGAGTCTCCTGCTGGAGT+TGG - chr5.1:55811241-55811260 MS.gene35919:intron 50.0%
CAACCTCCCTGAGGTTCAAA+AGG - chr5.1:55812518-55812537 MS.gene35919:intron 50.0%
CGATTACAACATCGGTGACG+AGG - chr5.1:55811288-55811307 MS.gene35919:intron 50.0%
CTTACCGGAGAAAGCTATGC+AGG - chr5.1:55811531-55811550 MS.gene35919:intron 50.0%
GGACCATGAATACGGCAAGT+TGG + chr5.1:55812562-55812581 None:intergenic 50.0%
TATGACCAACCAACTCCAGC+AGG + chr5.1:55811253-55811272 None:intergenic 50.0%
TCCGGTAAGAAACAACGCTC+TGG + chr5.1:55811520-55811539 None:intergenic 50.0%
TCGAACGCTCATTCGTGAAC+TGG - chr5.1:55813277-55813296 MS.gene35919:intron 50.0%
TGGACCTGCATAGCTTTCTC+CGG + chr5.1:55811538-55811557 None:intergenic 50.0%
TGTTAACTTTCGCCACCGTG+CGG - chr5.1:55813707-55813726 MS.gene35919:CDS 50.0%
! AGGGTACCCTATTGAGGATC+TGG - chr5.1:55810170-55810189 MS.gene35919:CDS 50.0%
! CCCCTCACTCTTTGGCTTAA+TGG - chr5.1:55810321-55810340 MS.gene35919:intron 50.0%
! GGAGAGCCTTTTGAACCTCA+GGG + chr5.1:55812527-55812546 None:intergenic 50.0%
! TGGAGAGCCTTTTGAACCTC+AGG + chr5.1:55812528-55812547 None:intergenic 50.0%
!! AGTAAAGGCACCTCCTCCAA+CGG + chr5.1:55811020-55811039 None:intergenic 50.0%
!! TATCCTACTGGTGATGGACG+TGG - chr5.1:55811055-55811074 MS.gene35919:CDS 50.0%
ACACCACGTCCATCACCAGT+AGG + chr5.1:55811061-55811080 None:intergenic 55.0%
AGCTTGGTTCCACAAAGGCC+AGG - chr5.1:55813337-55813356 MS.gene35919:intron 55.0%
CACGCTGAACCACTGCGATT+TGG + chr5.1:55810553-55810572 None:intergenic 55.0%
CCTCCAACGGAAGAACAACC+AGG + chr5.1:55811007-55811026 None:intergenic 55.0%
CCTGGTTGTTCTTCCGTTGG+AGG - chr5.1:55811004-55811023 MS.gene35919:CDS 55.0%
GGAGGTTGGGCAACTGAGTA+TGG - chr5.1:55813679-55813698 MS.gene35919:CDS 55.0%
GGTCCTGGTTGTTCTTCCGT+TGG - chr5.1:55811001-55811020 MS.gene35919:CDS 55.0%
GGTTGTTCTTCCGTTGGAGG+AGG - chr5.1:55811007-55811026 MS.gene35919:CDS 55.0%
GTTAACTTTCGCCACCGTGC+GGG - chr5.1:55813708-55813727 MS.gene35919:CDS 55.0%
TTAACTTTCGCCACCGTGCG+GGG - chr5.1:55813709-55813728 MS.gene35919:CDS 55.0%
! AGTCTCCTGCTGGAGTTGGT+TGG - chr5.1:55811245-55811264 MS.gene35919:intron 55.0%
! GAGCCTTTTGAACCTCAGGG+AGG + chr5.1:55812524-55812543 None:intergenic 55.0%
!! GCAAGTTGGTACGGTTCGCA+TGG + chr5.1:55812548-55812567 None:intergenic 55.0%
AACATCGGTGACGAGGCCAC+AGG - chr5.1:55811295-55811314 MS.gene35919:intron 60.0%
CATGTGAGATGCACCCCGCA+CGG + chr5.1:55813725-55813744 None:intergenic 60.0%
CGTGCGGGGTGCATCTCACA+TGG - chr5.1:55813723-55813742 MS.gene35919:CDS 65.0%
GTGAGATGCACCCCGCACGG+TGG + chr5.1:55813722-55813741 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 55810105 55813843 55810105 ID=MS.gene35919
chr5.1 mRNA 55810105 55813843 55810105 ID=MS.gene35919.t1;Parent=MS.gene35919
chr5.1 exon 55813603 55813843 55813603 ID=MS.gene35919.t1.exon1;Parent=MS.gene35919.t1
chr5.1 CDS 55813603 55813843 55813603 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55812839 55812946 55812839 ID=MS.gene35919.t1.exon2;Parent=MS.gene35919.t1
chr5.1 CDS 55812839 55812946 55812839 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55812632 55812724 55812632 ID=MS.gene35919.t1.exon3;Parent=MS.gene35919.t1
chr5.1 CDS 55812632 55812724 55812632 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55812396 55812488 55812396 ID=MS.gene35919.t1.exon4;Parent=MS.gene35919.t1
chr5.1 CDS 55812396 55812488 55812396 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55811975 55812060 55811975 ID=MS.gene35919.t1.exon5;Parent=MS.gene35919.t1
chr5.1 CDS 55811975 55812060 55811975 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55811589 55811867 55811589 ID=MS.gene35919.t1.exon6;Parent=MS.gene35919.t1
chr5.1 CDS 55811589 55811867 55811589 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55811356 55811489 55811356 ID=MS.gene35919.t1.exon7;Parent=MS.gene35919.t1
chr5.1 CDS 55811356 55811489 55811356 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55810993 55811085 55810993 ID=MS.gene35919.t1.exon8;Parent=MS.gene35919.t1
chr5.1 CDS 55810993 55811085 55810993 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55810590 55810707 55810590 ID=MS.gene35919.t1.exon9;Parent=MS.gene35919.t1
chr5.1 CDS 55810590 55810707 55810590 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
chr5.1 exon 55810105 55810272 55810105 ID=MS.gene35919.t1.exon10;Parent=MS.gene35919.t1
chr5.1 CDS 55810105 55810272 55810105 ID=cds.MS.gene35919.t1;Parent=MS.gene35919.t1
Gene Sequence

>MS.gene35919

ATGGCACAGTATTGGTTTCTTAGTGTATTGATTGCTGTGTCCTATCTTTGCAATCTGCTAGTTGAAGGGTACCCTATTGAGGATCTGGTTGTTAGTCTTCCTGGTCAACCTAAAGTTGAATTCAGTCAATATGCTGGTTATGTTGATATTGATGTAAAACATGGTAGAAGTTTGTTTTATTATTTTGTTGAAGCTGATCATAAACCTCAAAATAAACCCCTCACTCTTTGGCTTAATGGAGGTAAATAATAATTCACTAATATATTATATATCATCACTTTTAATTTTGATTATTATTGTTGCTGGCTTAATTTTCTTGTTATATTATTTTCAGTATATTTTTTGTTATCTTTTTATGATTTTTTTTTTTTGGTTTTATGTATGTTTGAATTGACGGTGAGTTTACCAAAATCACGGTTGTACTGTGATTTAGTGTAGCTTTTGTCCAAATCGCAGTGGTTCAGCGTGATTTTGACAATTAGACCAAACATGCAATTTGAATTTTACATGTTGTTATCTTTTGGTGAAAAGCATTGTACTTGTGTTGTTTTGTGTGTGTTGTTTTGTGTTATGTTATGTTGTGTTGTCCCTACAAATTCAGATTGTGTTGTTGTTCTTGTCTTTGTAGTACAAAATCATGTTTTCTTTGACAAGAACAGAATCTATGGATCAAAAATGTTGAATGATTCTGCTTTTCTAACAGTTGACACTTGACAGAAAGTACCTTTACCTTACATGAAAGATGCTATACTTTAATTTTTTTTTTTTTTTTTTACATGTAGAGTTTTTATTTTTTGTAAATCGGCGGCATCTGATTCAAATTCAAATCCTGTTACAAGGCTCATAACCTGTATATTAATTGAGAGAGATTAAGCAGTAACTTTGTTAATTTTTCAGGTCCTGGTTGTTCTTCCGTTGGAGGAGGTGCCTTTACTGAATTGGGTCCGTTTTATCCTACTGGTGATGGACGTGGTGTACGAAAGAATTCAATGTCCTGGAATAGAGGTATCAATTTTGTTTATTATGGTTTGAGTTGTGTTTTGATTGATATTAGAGAATAATTTGGGTTTGTATATAGATTCCTGATTTTAATATTGTGTTTACTTTTTTTTATCATAGCTTCCAATCTTCTCTTTATTGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCCGATTACAACATCGGTGACGAGGCCACAGGTACTGATTTAAACTTTTCTGTGAACAAATTTATGTAGTTATTATTATCTATGCAAAAGAAAACATTATTTTTAGATGTGTTATGTATGAAATTTGTTAGTTTTATAATGCATGGATATAATCCTTTAATTTGTTTTTGGCAGCCAATGATATGCTTTCGTTCTTCCTGAAATGGTACGAGAAGTTTCCTACCTACAAATCCAGAGCGTTGTTTCTTACCGGAGAAAGCTATGCAGGTCCAAAAGACACATTAATCAGATCCCAATTTTAATTATTAATTTATCGTTTCGAAATTCTCAAAAGTTGGTCTCGTGTTACAAAATATTCTGTTTTGCTGACATAATTCAGTTATACTGCATAATTAAACCTCGTATTGTATTCTTTATGCATATGCACATAACCTATGCCATCATTGCTAACTGGGATATTGCTATACAATTATTATCTCATTTTATTTATTGTTTATTGAAATATTTGTTCCTCTTTTCTATTTTTATTATCTGTTTTCTTTTACCTTTGTTCTCATGAACAATTTTTGTTTCTTTACTAATACTTTATAATGTTTATTCAGGACATTACATTCCTCAGTTAGCTAATGCTATTCTTGATTTTAATGCTCATTCAACCGGTTACAAGTTCAATTTGAAAGGAGTAGCTGTAAGATCCCATTCATATGATATCTTATATTTGGCTATTGAGTGTTTAATTAAGAAATCTGGGAATTTAATTAAAGTAATCTAAGCTTTTTTCTCTGGCTTTGTTAGATTGGCAACCCACTTTTGAATCTGGATCGAGATGCACGAGCACCATATGATTATTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTTGCCATTACAAAAGACTGCGATTTTGATGATTATACCTTCGCATCTCCTCATAATGTATCTGCATCATGCAACACTGCCATCAGTGATGCAAATGAAGTTGTCGGCAATTATATAAACAACTATGATGTGATTCTTGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAGATTGAAAAAGATGGTACTTTTTTGCCTCTTTCATTTCTATTATACTACTAATGATATTTTTAACTTATGATGAAATTATAAACTAATTAATTCGTCTATTTCGTTACTGCAGGCTACTAAAATAAGTATAGGTGTAGATGTCTGTATGAGTTATGAAAGAAAATTTTACTTCAACCTCCCTGAGGTTCAAAAGGCTCTCCATGCGAACCGTACCAACTTGCCGTATTCATGGTCCATGTGCAGTGGGTAAGTATAAATTAGAGACAGTCAAGTCCCATAAACTATTATTAGCGACACTCAAGTCCCATAAACTAGAGATATCATCTTTTAATACAGCTTATAAAATATAAACAATCATTGCCTTACATGTTGATTTTGTTCGATTGAGTTTTGCTAATTGAGATTTTTAAATTTACTTGAAATCTTGACTGCTATAATCATAATAGATATGTCTTTTTTTTTTCTTCATTTTCATTAGTTATCTGATGTCTGATCTGCAGTTTTTCTTCATTGCAGTGTTTTAAATTACAGTGATACAGATCCTAACATTAATATGCTTCCAATTCTCAAACGGATTGTTCAAAACCGTATTCCAGTATGGGTTTTCAGGTAATTAATTTCAACAAAAGAGACCAATTGGCTATTTAATTTATACATTTTGATAGTAAGCTACGTTACAGAATGCTAATTATGTTAATATCAATAAGTTAGTTATAAATTAGTTAGGTGGTTAGTCCCTATAAATACTATACTTTATCATTCATTTTACATCTTTTATCCGAACGACTCCTTACAAGTTTTACTCACTCTCAGGCTTCCAAATCTCTATTGATCATTTCTCTTGAAATCCTCCGATTACTAAGAAGCTAATCATGTGTTAAATTATTATGACAGTGGAGACCAAGATTCCGTTGTGCCATTACTAGGTTCTCGAACGCTCATTCGTGAACTGGCTGATGACCTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTAATTATTTTTAACAGTTTAACCATTTTCTGCATTTCGAAATATAAGTCCAGTATTCTATAGTATGGTTATGCAATTTTTTTCACTCCAGTTTTCCAAATCAACGGTGGTTTTCGTCACTGTTGTCAAATAAAGGCTATAGTGACGCTAATGCGTAGTGGAATTTAAACAAATCATTATTGTTATGAGATACGCTATTTAGCGGCGCTACAACATTGTAGCTTTGCGGAATTAACAAACCGTTATTTTCTACAATTCTTGGTTGACAACACTAGTTTTGATGAGTAAGAGTTGATTGATTGCATATCTATGTGTAGGTTGGAGGTTGGGCAACTGAGTATGGAAATTTGTTAACTTTCGCCACCGTGCGGGGTGCATCTCACATGGTACCATATGCACAACCTTCTAGAGCACTGCATCTGTTCAGTAACTTTGTGAATGGTAGGAGATTGCCAAACACAACAAGACCTTCAATTGATGGATGA
Protein sequence

>MS.gene35919.t1

MAQYWFLSVLIAVSYLCNLLVEGYPIEDLVVSLPGQPKVEFSQYAGYVDIDVKHGRSLFYYFVEADHKPQNKPLTLWLNGGPGCSSVGGGAFTELGPFYPTGDGRGVRKNSMSWNRASNLLFIESPAGVGWSYSNTTSDYNIGDEATANDMLSFFLKWYEKFPTYKSRALFLTGESYAGHYIPQLANAILDFNAHSTGYKFNLKGVAIGNPLLNLDRDARAPYDYFWSHGMISDEIGLAITKDCDFDDYTFASPHNVSASCNTAISDANEVVGNYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMSYERKFYFNLPEVQKALHANRTNLPYSWSMCSGVLNYSDTDPNINMLPILKRIVQNRIPVWVFSGDQDSVVPLLGSRTLIRELADDLKFKITVPYGAWFHKGQVGGWATEYGNLLTFATVRGASHMVPYAQPSRALHLFSNFVNGRRLPNTTRPSIDG