Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35936.t1 | XP_003596995.1 | 96.2 | 626 | 23 | 1 | 1 | 625 | 1 | 626 | 0.00E+00 | 1198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35936.t1 | Q9SDQ4 | 53.5 | 611 | 272 | 6 | 15 | 624 | 16 | 615 | 8.1e-194 | 678.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35936.t1 | G7IU02 | 96.2 | 626 | 23 | 1 | 1 | 625 | 1 | 626 | 0.0e+00 | 1198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034328 | MS.gene35936 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35936.t1 | MTR_2g088430 | 96.166 | 626 | 23 | 1 | 1 | 625 | 1 | 626 | 0.0 | 1242 |
| MS.gene35936.t1 | MTR_2g088450 | 48.885 | 628 | 315 | 3 | 1 | 625 | 6 | 630 | 0.0 | 638 |
| MS.gene35936.t1 | MTR_2g088450 | 48.885 | 628 | 315 | 3 | 1 | 625 | 6 | 630 | 0.0 | 637 |
| MS.gene35936.t1 | MTR_2g088450 | 48.885 | 628 | 315 | 3 | 1 | 625 | 6 | 630 | 0.0 | 637 |
| MS.gene35936.t1 | MTR_3g115910 | 46.445 | 633 | 318 | 6 | 8 | 628 | 3 | 626 | 0.0 | 600 |
| MS.gene35936.t1 | MTR_3g115910 | 46.445 | 633 | 318 | 6 | 8 | 628 | 48 | 671 | 0.0 | 600 |
| MS.gene35936.t1 | MTR_3g115910 | 46.445 | 633 | 318 | 6 | 8 | 628 | 3 | 626 | 0.0 | 599 |
| MS.gene35936.t1 | MTR_3g115910 | 46.445 | 633 | 318 | 6 | 8 | 628 | 48 | 671 | 0.0 | 598 |
| MS.gene35936.t1 | MTR_3g115910 | 46.445 | 633 | 318 | 6 | 8 | 628 | 3 | 626 | 0.0 | 598 |
| MS.gene35936.t1 | MTR_8g073210 | 44.356 | 629 | 342 | 5 | 4 | 628 | 9 | 633 | 0.0 | 572 |
| MS.gene35936.t1 | MTR_8g073210 | 44.480 | 625 | 339 | 5 | 4 | 624 | 9 | 629 | 0.0 | 572 |
| MS.gene35936.t1 | MTR_2g088450 | 50.558 | 538 | 263 | 2 | 88 | 625 | 31 | 565 | 0.0 | 572 |
| MS.gene35936.t1 | MTR_2g088450 | 50.841 | 535 | 260 | 2 | 91 | 625 | 1 | 532 | 0.0 | 571 |
| MS.gene35936.t1 | MTR_8g073210 | 44.356 | 629 | 342 | 5 | 4 | 628 | 9 | 633 | 0.0 | 571 |
| MS.gene35936.t1 | MTR_2g088450 | 50.841 | 535 | 260 | 2 | 91 | 625 | 1 | 532 | 0.0 | 570 |
| MS.gene35936.t1 | MTR_2g088450 | 50.841 | 535 | 260 | 2 | 91 | 625 | 1 | 532 | 0.0 | 570 |
| MS.gene35936.t1 | MTR_5g024350 | 43.657 | 607 | 336 | 3 | 23 | 625 | 57 | 661 | 0.0 | 563 |
| MS.gene35936.t1 | MTR_5g024350 | 43.657 | 607 | 336 | 3 | 23 | 625 | 25 | 629 | 0.0 | 563 |
| MS.gene35936.t1 | MTR_8g073490 | 43.296 | 619 | 328 | 8 | 24 | 628 | 25 | 634 | 1.09e-173 | 518 |
| MS.gene35936.t1 | MTR_8g073210 | 42.379 | 538 | 302 | 5 | 4 | 537 | 9 | 542 | 5.70e-154 | 455 |
| MS.gene35936.t1 | MTR_3g105610 | 31.957 | 654 | 401 | 18 | 4 | 628 | 9 | 647 | 2.24e-103 | 336 |
| MS.gene35936.t1 | MTR_3g105595 | 34.495 | 545 | 319 | 14 | 107 | 628 | 3 | 532 | 5.54e-94 | 308 |
| MS.gene35936.t1 | MTR_4g087925 | 26.560 | 625 | 393 | 18 | 22 | 625 | 34 | 613 | 5.72e-61 | 219 |
| MS.gene35936.t1 | MTR_2g015270 | 25.311 | 644 | 394 | 21 | 11 | 617 | 14 | 607 | 5.27e-59 | 214 |
| MS.gene35936.t1 | MTR_5g059920 | 27.031 | 640 | 397 | 22 | 5 | 618 | 16 | 611 | 3.95e-46 | 175 |
| MS.gene35936.t1 | MTR_5g059920 | 27.031 | 640 | 397 | 22 | 5 | 618 | 16 | 611 | 1.19e-45 | 174 |
| MS.gene35936.t1 | MTR_2g015310 | 24.375 | 640 | 399 | 20 | 5 | 624 | 15 | 589 | 1.70e-45 | 174 |
| MS.gene35936.t1 | MTR_2g015290 | 22.150 | 614 | 402 | 18 | 29 | 624 | 37 | 592 | 8.47e-40 | 157 |
| MS.gene35936.t1 | MTR_2g015280 | 22.484 | 636 | 409 | 19 | 9 | 624 | 14 | 585 | 4.47e-39 | 154 |
| MS.gene35936.t1 | MTR_5g059900 | 26.958 | 549 | 336 | 19 | 95 | 618 | 9 | 517 | 7.74e-38 | 150 |
| MS.gene35936.t1 | MTR_0018s0240 | 23.435 | 623 | 350 | 18 | 5 | 618 | 15 | 519 | 4.07e-36 | 145 |
| MS.gene35936.t1 | MTR_0018s0230 | 24.727 | 550 | 326 | 20 | 95 | 618 | 9 | 496 | 1.16e-33 | 137 |
| MS.gene35936.t1 | MTR_0018s0230 | 24.727 | 550 | 326 | 20 | 95 | 618 | 9 | 496 | 1.77e-33 | 137 |
| MS.gene35936.t1 | MTR_2g015260 | 24.786 | 468 | 279 | 17 | 179 | 628 | 2 | 414 | 2.27e-30 | 127 |
| MS.gene35936.t1 | MTR_5g060330 | 25.140 | 537 | 327 | 20 | 95 | 602 | 9 | 499 | 8.60e-25 | 109 |
| MS.gene35936.t1 | MTR_6g045087 | 32.468 | 154 | 95 | 4 | 468 | 613 | 40 | 192 | 1.79e-20 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35936.t1 | AT2G32400 | 53.997 | 613 | 269 | 7 | 13 | 624 | 15 | 615 | 0.0 | 696 |
| MS.gene35936.t1 | AT2G32390 | 46.912 | 599 | 313 | 2 | 30 | 625 | 48 | 644 | 0.0 | 610 |
| MS.gene35936.t1 | AT2G32390 | 46.912 | 599 | 313 | 2 | 30 | 625 | 48 | 644 | 0.0 | 610 |
| MS.gene35936.t1 | AT2G32390 | 46.912 | 599 | 313 | 2 | 30 | 625 | 48 | 644 | 0.0 | 610 |
| MS.gene35936.t1 | AT2G32390 | 46.912 | 599 | 313 | 2 | 30 | 625 | 48 | 644 | 0.0 | 610 |
| MS.gene35936.t1 | AT2G32390 | 46.912 | 599 | 313 | 2 | 30 | 625 | 48 | 644 | 0.0 | 609 |
| MS.gene35936.t1 | AT1G42540 | 46.044 | 632 | 323 | 6 | 10 | 628 | 1 | 627 | 0.0 | 607 |
| MS.gene35936.t1 | AT1G42540 | 46.044 | 632 | 323 | 6 | 10 | 628 | 1 | 627 | 0.0 | 607 |
| MS.gene35936.t1 | AT1G42540 | 46.044 | 632 | 323 | 6 | 10 | 628 | 1 | 627 | 0.0 | 607 |
| MS.gene35936.t1 | AT1G42540 | 46.044 | 632 | 323 | 6 | 10 | 628 | 1 | 627 | 0.0 | 606 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 605 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 605 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 605 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 605 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 605 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 604 |
| MS.gene35936.t1 | AT1G05200 | 47.088 | 601 | 313 | 2 | 25 | 625 | 56 | 651 | 0.0 | 604 |
| MS.gene35936.t1 | AT4G35290 | 44.197 | 629 | 334 | 4 | 14 | 628 | 3 | 628 | 0.0 | 571 |
| MS.gene35936.t1 | AT4G35290 | 43.879 | 629 | 336 | 4 | 14 | 628 | 3 | 628 | 0.0 | 570 |
| MS.gene35936.t1 | AT4G35290 | 43.879 | 629 | 336 | 4 | 14 | 628 | 3 | 628 | 0.0 | 570 |
| MS.gene35936.t1 | AT4G35290 | 43.879 | 629 | 336 | 4 | 14 | 628 | 3 | 628 | 0.0 | 570 |
| MS.gene35936.t1 | AT4G35290 | 43.879 | 629 | 336 | 4 | 14 | 628 | 3 | 628 | 0.0 | 570 |
| MS.gene35936.t1 | AT4G35290 | 43.879 | 629 | 336 | 4 | 14 | 628 | 3 | 628 | 0.0 | 570 |
| MS.gene35936.t1 | AT3G51480 | 42.080 | 625 | 351 | 4 | 1 | 625 | 1 | 614 | 0.0 | 551 |
| MS.gene35936.t1 | AT3G51480 | 42.080 | 625 | 351 | 4 | 1 | 625 | 1 | 614 | 0.0 | 551 |
| MS.gene35936.t1 | AT3G51480 | 42.080 | 625 | 351 | 4 | 1 | 625 | 1 | 614 | 0.0 | 551 |
| MS.gene35936.t1 | AT2G17260 | 44.098 | 610 | 331 | 5 | 24 | 628 | 28 | 632 | 0.0 | 551 |
| MS.gene35936.t1 | AT2G32390 | 46.593 | 543 | 285 | 2 | 86 | 625 | 2 | 542 | 0.0 | 549 |
| MS.gene35936.t1 | AT2G32390 | 46.211 | 541 | 286 | 2 | 88 | 625 | 48 | 586 | 0.0 | 544 |
| MS.gene35936.t1 | AT3G51480 | 42.243 | 535 | 298 | 4 | 91 | 625 | 1 | 524 | 7.85e-162 | 484 |
| MS.gene35936.t1 | AT2G29120 | 32.488 | 631 | 386 | 15 | 10 | 624 | 13 | 619 | 1.89e-104 | 338 |
| MS.gene35936.t1 | AT2G29100 | 31.369 | 628 | 376 | 16 | 17 | 624 | 13 | 605 | 2.07e-93 | 308 |
| MS.gene35936.t1 | AT2G29100 | 31.369 | 628 | 376 | 16 | 17 | 624 | 11 | 603 | 2.39e-93 | 308 |
| MS.gene35936.t1 | AT2G24720 | 30.933 | 611 | 379 | 15 | 30 | 623 | 32 | 616 | 8.92e-93 | 306 |
| MS.gene35936.t1 | AT5G11210 | 30.755 | 543 | 352 | 11 | 82 | 617 | 7 | 532 | 3.31e-91 | 297 |
| MS.gene35936.t1 | AT5G11210 | 30.755 | 543 | 352 | 11 | 82 | 617 | 7 | 532 | 3.37e-91 | 298 |
| MS.gene35936.t1 | AT5G11210 | 30.755 | 543 | 352 | 11 | 82 | 617 | 7 | 532 | 3.37e-91 | 298 |
| MS.gene35936.t1 | AT5G27100 | 31.002 | 629 | 401 | 14 | 5 | 624 | 7 | 611 | 2.14e-90 | 300 |
| MS.gene35936.t1 | AT2G29110 | 30.721 | 638 | 394 | 16 | 1 | 624 | 12 | 615 | 2.47e-90 | 300 |
| MS.gene35936.t1 | AT2G29110 | 30.721 | 638 | 394 | 16 | 1 | 624 | 11 | 614 | 3.11e-90 | 300 |
| MS.gene35936.t1 | AT2G24710 | 31.208 | 596 | 370 | 14 | 44 | 623 | 69 | 640 | 3.21e-90 | 297 |
| MS.gene35936.t1 | AT5G11210 | 30.957 | 533 | 344 | 11 | 92 | 617 | 25 | 540 | 4.46e-90 | 295 |
| MS.gene35936.t1 | AT5G11210 | 30.755 | 543 | 352 | 11 | 82 | 617 | 7 | 532 | 5.87e-90 | 297 |
| MS.gene35936.t1 | AT5G11210 | 29.362 | 596 | 395 | 13 | 30 | 617 | 37 | 614 | 7.04e-90 | 296 |
| MS.gene35936.t1 | AT5G11210 | 29.362 | 596 | 395 | 13 | 30 | 617 | 37 | 614 | 8.18e-90 | 296 |
| MS.gene35936.t1 | AT5G11210 | 29.362 | 596 | 395 | 13 | 30 | 617 | 37 | 614 | 8.18e-90 | 296 |
| MS.gene35936.t1 | AT2G24710 | 31.208 | 596 | 370 | 14 | 44 | 623 | 45 | 616 | 1.74e-89 | 297 |
| MS.gene35936.t1 | AT2G24710 | 31.208 | 596 | 370 | 14 | 44 | 623 | 69 | 640 | 2.05e-89 | 297 |
| MS.gene35936.t1 | AT5G11210 | 30.443 | 542 | 353 | 11 | 83 | 617 | 32 | 556 | 4.10e-89 | 295 |
| MS.gene35936.t1 | AT5G11210 | 29.362 | 596 | 395 | 13 | 30 | 617 | 37 | 614 | 6.79e-89 | 296 |
| MS.gene35936.t1 | AT5G11180 | 28.226 | 620 | 415 | 12 | 13 | 617 | 14 | 618 | 2.35e-85 | 287 |
| MS.gene35936.t1 | AT4G31710 | 30.514 | 603 | 379 | 15 | 30 | 624 | 32 | 602 | 1.21e-82 | 278 |
| MS.gene35936.t1 | AT5G11180 | 27.750 | 609 | 410 | 12 | 13 | 606 | 14 | 607 | 3.26e-79 | 269 |
| MS.gene35936.t1 | AT4G31710 | 29.519 | 603 | 378 | 15 | 30 | 624 | 55 | 618 | 8.57e-77 | 263 |
| MS.gene35936.t1 | AT3G07520 | 25.385 | 650 | 402 | 19 | 3 | 624 | 11 | 605 | 2.35e-59 | 214 |
| MS.gene35936.t1 | AT5G48400 | 26.108 | 609 | 385 | 14 | 30 | 624 | 40 | 597 | 1.16e-55 | 202 |
| MS.gene35936.t1 | AT5G48400 | 26.108 | 609 | 385 | 14 | 30 | 624 | 40 | 597 | 5.57e-55 | 201 |
| MS.gene35936.t1 | AT5G48410 | 25.287 | 609 | 385 | 18 | 30 | 624 | 42 | 594 | 3.40e-54 | 197 |
| MS.gene35936.t1 | AT5G48410 | 25.287 | 609 | 385 | 18 | 30 | 624 | 42 | 594 | 8.17e-54 | 198 |
| MS.gene35936.t1 | AT3G04110 | 25.122 | 617 | 375 | 19 | 28 | 624 | 28 | 577 | 5.80e-49 | 183 |
| MS.gene35936.t1 | AT3G04110 | 25.122 | 617 | 375 | 19 | 28 | 624 | 28 | 577 | 1.02e-48 | 182 |
| MS.gene35936.t1 | AT5G48410 | 24.747 | 594 | 367 | 20 | 30 | 606 | 42 | 572 | 1.43e-42 | 165 |
| MS.gene35936.t1 | AT5G48410 | 24.873 | 591 | 366 | 20 | 30 | 606 | 42 | 568 | 2.27e-42 | 164 |
| MS.gene35936.t1 | AT3G04110 | 23.625 | 618 | 355 | 20 | 28 | 624 | 28 | 549 | 5.11e-38 | 150 |
| MS.gene35936.t1 | AT5G11210 | 37.500 | 96 | 57 | 2 | 523 | 617 | 13 | 106 | 1.26e-17 | 85.9 |
Find 109 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCAATGTTCACACTTTC+AGG | 0.156288 | 2.1:+13542999 | None:intergenic |
| TTGACAAGTGCGTCATAATT+TGG | 0.176477 | 2.1:+13540913 | None:intergenic |
| TCAATCAGATGAAAATTAAT+AGG | 0.227857 | 2.1:-13541272 | MS.gene35936:CDS |
| TGTACCTTATGATTTGGATT+TGG | 0.240431 | 2.1:-13543058 | MS.gene35936:CDS |
| GTACCTTATGATTTGGATTT+GGG | 0.264123 | 2.1:-13543057 | MS.gene35936:CDS |
| CTATTCTTGGATGACGATTA+TGG | 0.271089 | 2.1:-13541981 | MS.gene35936:CDS |
| CAGTTGCAGCATATGAAATA+AGG | 0.273843 | 2.1:+13542123 | None:intergenic |
| TGATGATCGGAGTGGTTATA+TGG | 0.274018 | 2.1:-13540552 | MS.gene35936:CDS |
| TCAACAAAACTTGCTCTCTT+TGG | 0.275968 | 2.1:+13541066 | None:intergenic |
| AGAGGTCATTGTTCTATTCT+TGG | 0.278297 | 2.1:-13541994 | MS.gene35936:CDS |
| GGTTATTGGTCTAATCATTC+AGG | 0.278979 | 2.1:-13541246 | MS.gene35936:CDS |
| TCTTACTATTTGTCTTAAAC+AGG | 0.285857 | 2.1:+13540349 | None:intergenic |
| CAAGGGGTTGCAGCCATAAT+TGG | 0.286326 | 2.1:-13542206 | MS.gene35936:CDS |
| CTCTCTTCATGAAAACAATA+TGG | 0.295237 | 2.1:-13541463 | MS.gene35936:CDS |
| AAAATTCTCAATCTCGGATC+TGG | 0.319866 | 2.1:+13541798 | None:intergenic |
| TATCTGCAGAGAATGGTTTA+AGG | 0.321239 | 2.1:+13540602 | None:intergenic |
| ATTGTTACAAGTTGTCTCTT+AGG | 0.330472 | 2.1:+13540490 | None:intergenic |
| GAGGAAATTGAAGGGATGAT+AGG | 0.341401 | 2.1:+13542093 | None:intergenic |
| AAATTAATAGGGTTGGTTAT+TGG | 0.349931 | 2.1:-13541260 | MS.gene35936:CDS |
| TTGCTCTGAGTCACTTTGTA+TGG | 0.359059 | 2.1:+13542058 | None:intergenic |
| AGATGATTGTGGACCAATTA+TGG | 0.365039 | 2.1:+13542193 | None:intergenic |
| TTAGTCTCACTAAGAATTGT+AGG | 0.392044 | 2.1:+13542897 | None:intergenic |
| TTCACCTTTGATTCAGTCAT+AGG | 0.399791 | 2.1:-13542972 | MS.gene35936:CDS |
| CAGGTATATGATGCAGTTGT+TGG | 0.406694 | 2.1:-13540742 | MS.gene35936:CDS |
| AATACAAGTTTGAACTCCTA+TGG | 0.414453 | 2.1:-13541564 | MS.gene35936:CDS |
| AGGAAATTGAAGGGATGATA+GGG | 0.417101 | 2.1:+13542094 | None:intergenic |
| GGGGCCTGAGTGGTCAAATT+CGG | 0.422777 | 2.1:-13541344 | MS.gene35936:CDS |
| CCAACAGGCTTGAATACAAA+AGG | 0.428380 | 2.1:+13540952 | None:intergenic |
| AAACAGAACGACCGCGCGGC+TGG | 0.428647 | 2.1:-13541128 | MS.gene35936:CDS |
| ACAGTTCAAAATCAAATGCT+TGG | 0.428936 | 2.1:-13540630 | MS.gene35936:CDS |
| AGTTGCAGCATATGAAATAA+GGG | 0.431944 | 2.1:+13542124 | None:intergenic |
| CAATCAGATGAAAATTAATA+GGG | 0.439906 | 2.1:-13541271 | MS.gene35936:CDS |
| CATTTGAAGTTTACGAGCAA+TGG | 0.441107 | 2.1:+13541773 | None:intergenic |
| GTACCGCATACGGAAGGAAT+TGG | 0.442577 | 2.1:-13541441 | MS.gene35936:CDS |
| TGGTCAAATTCGGTTTAGTT+CGG | 0.457714 | 2.1:-13541334 | MS.gene35936:CDS |
| GCCAATCTGATCGACTTTAA+CGG | 0.457788 | 2.1:-13542023 | MS.gene35936:CDS |
| CGCTGGCGAAACTGAATGTA+AGG | 0.458645 | 2.1:+13541704 | None:intergenic |
| TTTGCTTTACCGTTTCCAAC+AGG | 0.464920 | 2.1:+13540937 | None:intergenic |
| TGAGCGATGAACTTGAAAAC+AGG | 0.466496 | 2.1:-13541938 | MS.gene35936:CDS |
| AATGCGAAGCCGCTGAGAAT+AGG | 0.470583 | 2.1:-13541093 | MS.gene35936:CDS |
| ATCGTCAAGCCTTGTTATAG+TGG | 0.479301 | 2.1:-13540662 | MS.gene35936:CDS |
| GTTGCATCATTTATGATGAT+CGG | 0.483653 | 2.1:-13540565 | MS.gene35936:CDS |
| CAGTTCAAAATCAAATGCTT+GGG | 0.484213 | 2.1:-13540629 | MS.gene35936:CDS |
| TAGAGTTGCAAAGGTGGCTA+TGG | 0.484834 | 2.1:-13542949 | MS.gene35936:CDS |
| CGATATCTTCATGAAAGCCT+TGG | 0.486935 | 2.1:-13540995 | MS.gene35936:CDS |
| TTACCCAAATCCAAATCATA+AGG | 0.491143 | 2.1:+13543054 | None:intergenic |
| ACAAAGTGACTCAGAGCAAA+TGG | 0.493765 | 2.1:-13542054 | MS.gene35936:CDS |
| CAGATGAAAATTAATAGGGT+TGG | 0.494075 | 2.1:-13541267 | MS.gene35936:CDS |
| GTATTCAAGCCTGTTGGAAA+CGG | 0.497663 | 2.1:-13540946 | MS.gene35936:CDS |
| TGCAAAGGTGGCTATGGAAA+TGG | 0.499861 | 2.1:-13542943 | MS.gene35936:CDS |
| ATTGCCAAGCTTCTGATCTA+CGG | 0.507527 | 2.1:+13541170 | None:intergenic |
| CTAAGAGAGTTCTGATTCGC+TGG | 0.518223 | 2.1:+13541687 | None:intergenic |
| GATGACGATTATGGAAGAAA+CGG | 0.519612 | 2.1:-13541972 | MS.gene35936:CDS |
| AATTGAAGGGATGATAGGGT+TGG | 0.521581 | 2.1:+13542098 | None:intergenic |
| CTTGGCAATATAACTTGGCC+AGG | 0.522852 | 2.1:-13541156 | MS.gene35936:CDS |
| TTCATACGGAATAAATTCCA+AGG | 0.524188 | 2.1:+13540978 | None:intergenic |
| AACAGAACGACCGCGCGGCT+GGG | 0.524646 | 2.1:-13541127 | MS.gene35936:CDS |
| GCAATATAACTTGGCCAGGT+GGG | 0.525538 | 2.1:-13541152 | MS.gene35936:CDS |
| ACAAGGCTTGACGATGCAAA+AGG | 0.527257 | 2.1:+13540670 | None:intergenic |
| CTCAGAGCAAATGGCCGCAA+TGG | 0.530515 | 2.1:-13542045 | MS.gene35936:CDS |
| GAGAATCTCAAAGTCTTCGC+TGG | 0.534011 | 2.1:-13541408 | MS.gene35936:CDS |
| AATACAAAAGGAATTTCATA+CGG | 0.535736 | 2.1:+13540964 | None:intergenic |
| CATAGGTAGAGTTGCAAAGG+TGG | 0.536434 | 2.1:-13542955 | MS.gene35936:CDS |
| TCCGTTAAAGTCGATCAGAT+TGG | 0.536446 | 2.1:+13542022 | None:intergenic |
| AGAAGCTTGGCAATATAACT+TGG | 0.538646 | 2.1:-13541161 | MS.gene35936:CDS |
| CTGAGTCACTTTGTATGGTA+CGG | 0.539989 | 2.1:+13542063 | None:intergenic |
| TTGTCTTAAACAGGGTTGAG+AGG | 0.540233 | 2.1:+13540358 | None:intergenic |
| CACCACATATCTGCAGAGAA+TGG | 0.541695 | 2.1:+13540595 | None:intergenic |
| GTTACAAGTTGTCTCTTAGG+AGG | 0.543117 | 2.1:+13540493 | None:intergenic |
| TAATCTCAACTTGATAATGA+AGG | 0.545343 | 2.1:-13542877 | MS.gene35936:CDS |
| AACCATTCTCTGCAGATATG+TGG | 0.547037 | 2.1:-13540597 | MS.gene35936:CDS |
| AAATTCTCAATCTCGGATCT+GGG | 0.547512 | 2.1:+13541799 | None:intergenic |
| AAACAATATGGTACCGCATA+CGG | 0.547920 | 2.1:-13541451 | MS.gene35936:CDS |
| TCTGATCTACGGAAACCCTT+CGG | 0.548071 | 2.1:+13541181 | None:intergenic |
| CGAGTCAACGATGACTTTCG+TGG | 0.551219 | 2.1:-13540517 | MS.gene35936:CDS |
| ACGTATGGCTTGCCACAGAT+TGG | 0.556940 | 2.1:-13541737 | MS.gene35936:CDS |
| CACGAAAGTCATCGTTGACT+CGG | 0.560075 | 2.1:+13540518 | None:intergenic |
| CGACTTTAACGGATGGAAAG+AGG | 0.563583 | 2.1:-13542012 | MS.gene35936:CDS |
| GGCAATATAACTTGGCCAGG+TGG | 0.568347 | 2.1:-13541153 | MS.gene35936:CDS |
| TGATGACTAGTGACTACGTA+TGG | 0.568708 | 2.1:-13541752 | MS.gene35936:CDS |
| GTTTCCGTAGATCAGAAGCT+TGG | 0.569047 | 2.1:-13541174 | MS.gene35936:CDS |
| CATATGAAATAAGGGGAACA+TGG | 0.570841 | 2.1:+13542132 | None:intergenic |
| AACACGAGGACTATATACTC+TGG | 0.576131 | 2.1:+13541839 | None:intergenic |
| CAACAGAGTCATCAGATGCA+AGG | 0.576716 | 2.1:-13541027 | MS.gene35936:CDS |
| AATCTCAAAGTCTTCGCTGG+TGG | 0.577787 | 2.1:-13541405 | MS.gene35936:CDS |
| TTGAGAAATCGAATGAGCTA+TGG | 0.579645 | 2.1:+13542169 | None:intergenic |
| TCTACCTATGACTGAATCAA+AGG | 0.582369 | 2.1:+13542968 | None:intergenic |
| CTTACTATTTGTCTTAAACA+GGG | 0.586277 | 2.1:+13540350 | None:intergenic |
| TAGTCTCACTAAGAATTGTA+GGG | 0.586929 | 2.1:+13542898 | None:intergenic |
| CTCAACTTGATAATGAAGGA+TGG | 0.591391 | 2.1:-13542873 | MS.gene35936:CDS |
| ATCTGATCGACTTTAACGGA+TGG | 0.591849 | 2.1:-13542019 | MS.gene35936:CDS |
| GACAGAAATATCATTAGTAG+TGG | 0.593341 | 2.1:-13541312 | MS.gene35936:CDS |
| AGTCATAGGTAGAGTTGCAA+AGG | 0.594363 | 2.1:-13542958 | MS.gene35936:CDS |
| GTCGATCAGATTGGCCATTG+CGG | 0.596408 | 2.1:+13542031 | None:intergenic |
| TGAGCTATGGCAGATGATTG+TGG | 0.605931 | 2.1:+13542182 | None:intergenic |
| AAGGGGAACATGGACTGCAT+CGG | 0.607719 | 2.1:+13542142 | None:intergenic |
| AACAGAGTCATCAGATGCAA+GGG | 0.613644 | 2.1:-13541026 | MS.gene35936:CDS |
| AACTCTCTTAGCGTTGTCGA+AGG | 0.619157 | 2.1:-13541675 | MS.gene35936:CDS |
| ATGCCAATTCCTTCCGTATG+CGG | 0.619711 | 2.1:+13541438 | None:intergenic |
| GTTGCAGCATATGAAATAAG+GGG | 0.633115 | 2.1:+13542125 | None:intergenic |
| TGATAGGAGCCACTATAACA+AGG | 0.634135 | 2.1:+13540653 | None:intergenic |
| ATCATTTATGATGATCGGAG+TGG | 0.644678 | 2.1:-13540560 | MS.gene35936:CDS |
| AGGCCTGAAAGTGTGAACAT+TGG | 0.645286 | 2.1:-13543002 | MS.gene35936:CDS |
| TTTGGCACTCCTATTCTCAG+CGG | 0.648585 | 2.1:+13541084 | None:intergenic |
| GGTAGCAGAGAGCCAATCTG+TGG | 0.661184 | 2.1:+13541725 | None:intergenic |
| AATATGGTACCGCATACGGA+AGG | 0.662211 | 2.1:-13541447 | MS.gene35936:CDS |
| TAAACCGAATTTGACCACTC+AGG | 0.678171 | 2.1:+13541340 | None:intergenic |
| TCAGCAATCACCCAGCCGCG+CGG | 0.718796 | 2.1:+13541117 | None:intergenic |
| GGGAAAACAGAACGACCGCG+CGG | 0.763278 | 2.1:-13541132 | MS.gene35936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATCAAAATAATTATAT+AGG | + | chr2.1:13543014-13543033 | None:intergenic | 10.0% |
| !! | ATATCTAATAAATCATTGAT+TGG | + | chr2.1:13542614-13542633 | None:intergenic | 15.0% |
| !! | TACAATTGCAAATTTAAATT+TGG | + | chr2.1:13541158-13541177 | None:intergenic | 15.0% |
| !!! | ACATTCAATTGATAAATTTT+TGG | - | chr2.1:13541932-13541951 | MS.gene35936:CDS | 15.0% |
| !!! | ATTATTACAGTCAAATTTTA+GGG | - | chr2.1:13542076-13542095 | MS.gene35936:CDS | 15.0% |
| !!! | TATTATTACAGTCAAATTTT+AGG | - | chr2.1:13542075-13542094 | MS.gene35936:CDS | 15.0% |
| !! | AAAGAACAAGAAAAATGTTA+AGG | + | chr2.1:13540639-13540658 | None:intergenic | 20.0% |
| !! | AATACAAAAGGAATTTCATA+CGG | + | chr2.1:13542479-13542498 | None:intergenic | 20.0% |
| !! | CAATCAGATGAAAATTAATA+GGG | - | chr2.1:13542169-13542188 | MS.gene35936:CDS | 20.0% |
| !! | TCAATCAGATGAAAATTAAT+AGG | - | chr2.1:13542168-13542187 | MS.gene35936:CDS | 20.0% |
| !!! | AAAAAGATTTTATTTCTCGA+TGG | - | chr2.1:13541829-13541848 | MS.gene35936:CDS | 20.0% |
| !!! | GTTGATTTTTATTTGCTTTT+AGG | - | chr2.1:13540780-13540799 | MS.gene35936:intron | 20.0% |
| !!! | TTATTACAGTCAAATTTTAG+GGG | - | chr2.1:13542077-13542096 | MS.gene35936:CDS | 20.0% |
| !!! | TTTATATGAAAGTTTGTTAC+AGG | - | chr2.1:13542679-13542698 | MS.gene35936:intron | 20.0% |
| ! | AATTGAGAACGCAAAATATT+TGG | - | chr2.1:13541058-13541077 | MS.gene35936:CDS | 25.0% |
| ! | ATGGAAAAAATTCTCAATCT+CGG | + | chr2.1:13541651-13541670 | None:intergenic | 25.0% |
| ! | ATTGAGAACGCAAAATATTT+GGG | - | chr2.1:13541059-13541078 | MS.gene35936:CDS | 25.0% |
| ! | TCTAAATTTGTCTATTCTGT+TGG | - | chr2.1:13540965-13540984 | MS.gene35936:CDS | 25.0% |
| ! | TTGAAGCTTAAACTTAGAAA+CGG | + | chr2.1:13540891-13540910 | None:intergenic | 25.0% |
| ! | TTGCATGAAGTTACTAAAAA+CGG | + | chr2.1:13542987-13543006 | None:intergenic | 25.0% |
| !!! | AAATTAATAGGGTTGGTTAT+TGG | - | chr2.1:13542180-13542199 | MS.gene35936:CDS | 25.0% |
| !!! | ATTAGAGTTTTAAGATGTAG+TGG | - | chr2.1:13540841-13540860 | MS.gene35936:intron | 25.0% |
| !!! | CTGCATTTTATTTCTTTTTC+AGG | - | chr2.1:13543054-13543073 | MS.gene35936:CDS | 25.0% |
| !!! | TAATCTCAACTTGATAATGA+AGG | - | chr2.1:13540563-13540582 | MS.gene35936:CDS | 25.0% |
| !!! | TCTTTTTTCTTTCTAGAATC+TGG | + | chr2.1:13541816-13541835 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGAACTGTTGAT+AGG | + | chr2.1:13542806-13542825 | None:intergenic | 25.0% |
| AATACAAGTTTGAACTCCTA+TGG | - | chr2.1:13541876-13541895 | MS.gene35936:CDS | 30.0% | |
| ACAGTTCAAAATCAAATGCT+TGG | - | chr2.1:13542810-13542829 | MS.gene35936:intron | 30.0% | |
| AGTTGCAGCATATGAAATAA+GGG | + | chr2.1:13541319-13541338 | None:intergenic | 30.0% | |
| ATCATAAGCGAAAAATCCAT+AGG | + | chr2.1:13541895-13541914 | None:intergenic | 30.0% | |
| ATTGTTACAAGTTGTCTCTT+AGG | + | chr2.1:13542953-13542972 | None:intergenic | 30.0% | |
| ATTTGTCTATTCTGTTGGAT+TGG | - | chr2.1:13540970-13540989 | MS.gene35936:CDS | 30.0% | |
| CAGATAATGTTCAAATCAGA+TGG | + | chr2.1:13541190-13541209 | None:intergenic | 30.0% | |
| CAGATGAAAATTAATAGGGT+TGG | - | chr2.1:13542173-13542192 | MS.gene35936:CDS | 30.0% | |
| CAGTTCAAAATCAAATGCTT+GGG | - | chr2.1:13542811-13542830 | MS.gene35936:intron | 30.0% | |
| CGATGGAAAAAAATGCAAAA+AGG | - | chr2.1:13541846-13541865 | MS.gene35936:CDS | 30.0% | |
| CTCTCTTCATGAAAACAATA+TGG | - | chr2.1:13541977-13541996 | MS.gene35936:CDS | 30.0% | |
| CTTGTTCTTTCTCTCTTTAT+TGG | - | chr2.1:13540649-13540668 | MS.gene35936:CDS | 30.0% | |
| GAAAAAGAGAGGAAATTGAA+GGG | + | chr2.1:13541358-13541377 | None:intergenic | 30.0% | |
| GACAGAAATATCATTAGTAG+TGG | - | chr2.1:13542128-13542147 | MS.gene35936:CDS | 30.0% | |
| GCAACATAGTTATTACTCTT+TGG | - | chr2.1:13541121-13541140 | MS.gene35936:CDS | 30.0% | |
| GTTGCATCATTTATGATGAT+CGG | - | chr2.1:13542875-13542894 | MS.gene35936:CDS | 30.0% | |
| TAAACTTAGAAACGGCAAAA+AGG | + | chr2.1:13540883-13540902 | None:intergenic | 30.0% | |
| TAGTCTCACTAAGAATTGTA+GGG | + | chr2.1:13540545-13540564 | None:intergenic | 30.0% | |
| TTACCCAAATCCAAATCATA+AGG | + | chr2.1:13540389-13540408 | None:intergenic | 30.0% | |
| TTAGTCTCACTAAGAATTGT+AGG | + | chr2.1:13540546-13540565 | None:intergenic | 30.0% | |
| TTCATACGGAATAAATTCCA+AGG | + | chr2.1:13542465-13542484 | None:intergenic | 30.0% | |
| TTGCGTTCTCAATTTATTAC+TGG | + | chr2.1:13541052-13541071 | None:intergenic | 30.0% | |
| ! | ATATTGACTGAGAGTTTAAG+AGG | + | chr2.1:13540946-13540965 | None:intergenic | 30.0% |
| ! | GTACCTTATGATTTGGATTT+GGG | - | chr2.1:13540383-13540402 | MS.gene35936:intron | 30.0% |
| ! | TGTACCTTATGATTTGGATT+TGG | - | chr2.1:13540382-13540401 | MS.gene35936:intron | 30.0% |
| ! | TTTTCGCTTATGATACAGTT+TGG | - | chr2.1:13541901-13541920 | MS.gene35936:CDS | 30.0% |
| !! | TTTCTTTTTCGCAAGAACTT+CGG | + | chr2.1:13542237-13542256 | None:intergenic | 30.0% |
| !!! | GTAGTTTTGTTCATAGTGAA+AGG | - | chr2.1:13540418-13540437 | MS.gene35936:intron | 30.0% |
| !!! | TGGTTTTGTACCTTATGATT+TGG | - | chr2.1:13540376-13540395 | MS.gene35936:intron | 30.0% |
| AAAATTCTCAATCTCGGATC+TGG | + | chr2.1:13541645-13541664 | None:intergenic | 35.0% | |
| AAACAATATGGTACCGCATA+CGG | - | chr2.1:13541989-13542008 | MS.gene35936:CDS | 35.0% | |
| AAATTCTCAATCTCGGATCT+GGG | + | chr2.1:13541644-13541663 | None:intergenic | 35.0% | |
| AGAAGCTTGGCAATATAACT+TGG | - | chr2.1:13542279-13542298 | MS.gene35936:intron | 35.0% | |
| AGAGGTCATTGTTCTATTCT+TGG | - | chr2.1:13541446-13541465 | MS.gene35936:CDS | 35.0% | |
| AGATGATTGTGGACCAATTA+TGG | + | chr2.1:13541250-13541269 | None:intergenic | 35.0% | |
| AGGAAATTGAAGGGATGATA+GGG | + | chr2.1:13541349-13541368 | None:intergenic | 35.0% | |
| ATCATTTATGATGATCGGAG+TGG | - | chr2.1:13542880-13542899 | MS.gene35936:CDS | 35.0% | |
| CAGTTGCAGCATATGAAATA+AGG | + | chr2.1:13541320-13541339 | None:intergenic | 35.0% | |
| CATATGAAATAAGGGGAACA+TGG | + | chr2.1:13541311-13541330 | None:intergenic | 35.0% | |
| CTATTCTTGGATGACGATTA+TGG | - | chr2.1:13541459-13541478 | MS.gene35936:CDS | 35.0% | |
| GATGACGATTATGGAAGAAA+CGG | - | chr2.1:13541468-13541487 | MS.gene35936:CDS | 35.0% | |
| GGAAAAAGAGAGGAAATTGA+AGG | + | chr2.1:13541359-13541378 | None:intergenic | 35.0% | |
| GTTGCAGCATATGAAATAAG+GGG | + | chr2.1:13541318-13541337 | None:intergenic | 35.0% | |
| TATCTGCAGAGAATGGTTTA+AGG | + | chr2.1:13542841-13542860 | None:intergenic | 35.0% | |
| TCTACCTATGACTGAATCAA+AGG | + | chr2.1:13540475-13540494 | None:intergenic | 35.0% | |
| TGGTCAAATTCGGTTTAGTT+CGG | - | chr2.1:13542106-13542125 | MS.gene35936:CDS | 35.0% | |
| TGTCAGTGTCATCTATTTGT+CGG | + | chr2.1:13541021-13541040 | None:intergenic | 35.0% | |
| TTCACCTTTGATTCAGTCAT+AGG | - | chr2.1:13540468-13540487 | MS.gene35936:intron | 35.0% | |
| TTGACAAGTGCGTCATAATT+TGG | + | chr2.1:13542530-13542549 | None:intergenic | 35.0% | |
| TTGAGAAATCGAATGAGCTA+TGG | + | chr2.1:13541274-13541293 | None:intergenic | 35.0% | |
| ! | AAAAGTCCGCAATTTTTGTG+CGG | + | chr2.1:13542745-13542764 | None:intergenic | 35.0% |
| ! | AATGCTTTTCTTGGATCAAC+TGG | - | chr2.1:13540597-13540616 | MS.gene35936:CDS | 35.0% |
| ! | CATTTGAAGTTTACGAGCAA+TGG | + | chr2.1:13541670-13541689 | None:intergenic | 35.0% |
| ! | GGTATGTGTAATGCTTTTCT+TGG | - | chr2.1:13540588-13540607 | MS.gene35936:CDS | 35.0% |
| ! | GGTTATTGGTCTAATCATTC+AGG | - | chr2.1:13542194-13542213 | MS.gene35936:CDS | 35.0% |
| ! | TCAACAAAACTTGCTCTCTT+TGG | + | chr2.1:13542377-13542396 | None:intergenic | 35.0% |
| !! | CTCAACTTGATAATGAAGGA+TGG | - | chr2.1:13540567-13540586 | MS.gene35936:CDS | 35.0% |
| !! | TTCTTTTTCGCAAGAACTTC+GGG | + | chr2.1:13542236-13542255 | None:intergenic | 35.0% |
| !!! | CTTTTCAAGTACTTGAGCAA+GGG | - | chr2.1:13541217-13541236 | MS.gene35936:CDS | 35.0% |
| !!! | TTTTCAAGTACTTGAGCAAG+GGG | - | chr2.1:13541218-13541237 | MS.gene35936:CDS | 35.0% |
| AACACGAGGACTATATACTC+TGG | + | chr2.1:13541604-13541623 | None:intergenic | 40.0% | |
| AACAGAGTCATCAGATGCAA+GGG | - | chr2.1:13542414-13542433 | MS.gene35936:intron | 40.0% | |
| AACCATTCTCTGCAGATATG+TGG | - | chr2.1:13542843-13542862 | MS.gene35936:CDS | 40.0% | |
| AATTGAAGGGATGATAGGGT+TGG | + | chr2.1:13541345-13541364 | None:intergenic | 40.0% | |
| ACAAAGTGACTCAGAGCAAA+TGG | - | chr2.1:13541386-13541405 | MS.gene35936:CDS | 40.0% | |
| ACATGAACGACAAAAACACG+AGG | + | chr2.1:13541618-13541637 | None:intergenic | 40.0% | |
| AGTCATAGGTAGAGTTGCAA+AGG | - | chr2.1:13540482-13540501 | MS.gene35936:intron | 40.0% | |
| ATTGCCAAGCTTCTGATCTA+CGG | + | chr2.1:13542273-13542292 | None:intergenic | 40.0% | |
| CAGGTATATGATGCAGTTGT+TGG | - | chr2.1:13542698-13542717 | MS.gene35936:intron | 40.0% | |
| CCAACAGGCTTGAATACAAA+AGG | + | chr2.1:13542491-13542510 | None:intergenic | 40.0% | |
| CGATATCTTCATGAAAGCCT+TGG | - | chr2.1:13542445-13542464 | MS.gene35936:intron | 40.0% | |
| GACAAACCGCACAAAAATTG+CGG | - | chr2.1:13542736-13542755 | MS.gene35936:intron | 40.0% | |
| GAGGAAATTGAAGGGATGAT+AGG | + | chr2.1:13541350-13541369 | None:intergenic | 40.0% | |
| GTATTCAAGCCTGTTGGAAA+CGG | - | chr2.1:13542494-13542513 | MS.gene35936:intron | 40.0% | |
| GTGCCTTTAATGTGAAGTGT+CGG | - | chr2.1:13541093-13541112 | MS.gene35936:CDS | 40.0% | |
| GTTACAAGTTGTCTCTTAGG+AGG | + | chr2.1:13542950-13542969 | None:intergenic | 40.0% | |
| TAAACCGAATTTGACCACTC+AGG | + | chr2.1:13542103-13542122 | None:intergenic | 40.0% | |
| TCCGTTAAAGTCGATCAGAT+TGG | + | chr2.1:13541421-13541440 | None:intergenic | 40.0% | |
| TGAGCGATGAACTTGAAAAC+AGG | - | chr2.1:13541502-13541521 | MS.gene35936:CDS | 40.0% | |
| TGATAGGAGCCACTATAACA+AGG | + | chr2.1:13542790-13542809 | None:intergenic | 40.0% | |
| TGATGACTAGTGACTACGTA+TGG | - | chr2.1:13541688-13541707 | MS.gene35936:CDS | 40.0% | |
| TGATGATCGGAGTGGTTATA+TGG | - | chr2.1:13542888-13542907 | MS.gene35936:CDS | 40.0% | |
| TGCGAAAAAGAAACACCGAA+GGG | - | chr2.1:13542244-13542263 | MS.gene35936:intron | 40.0% | |
| TGTATGGTACGGAAAAAGAG+AGG | + | chr2.1:13541369-13541388 | None:intergenic | 40.0% | |
| TTAGAAACGGCAAAAAGGTC+AGG | + | chr2.1:13540878-13540897 | None:intergenic | 40.0% | |
| TTGCGAAAAAGAAACACCGA+AGG | - | chr2.1:13542243-13542262 | MS.gene35936:intron | 40.0% | |
| TTTGCTTTACCGTTTCCAAC+AGG | + | chr2.1:13542506-13542525 | None:intergenic | 40.0% | |
| ! | ATCTGATCGACTTTAACGGA+TGG | - | chr2.1:13541421-13541440 | MS.gene35936:CDS | 40.0% |
| ! | CCTTTTGTATTCAAGCCTGT+TGG | - | chr2.1:13542488-13542507 | MS.gene35936:intron | 40.0% |
| ! | CTGAGTCACTTTGTATGGTA+CGG | + | chr2.1:13541380-13541399 | None:intergenic | 40.0% |
| ! | GCCAATCTGATCGACTTTAA+CGG | - | chr2.1:13541417-13541436 | MS.gene35936:CDS | 40.0% |
| ! | TCTATTTGTCGGTGCTTCAT+AGG | + | chr2.1:13541010-13541029 | None:intergenic | 40.0% |
| ! | TTGCTCTGAGTCACTTTGTA+TGG | + | chr2.1:13541385-13541404 | None:intergenic | 40.0% |
| !! | ATCGTCAAGCCTTGTTATAG+TGG | - | chr2.1:13542778-13542797 | MS.gene35936:intron | 40.0% |
| !!! | GCTTTTCAAGTACTTGAGCA+AGG | - | chr2.1:13541216-13541235 | MS.gene35936:CDS | 40.0% |
| AACTCTCTTAGCGTTGTCGA+AGG | - | chr2.1:13541765-13541784 | MS.gene35936:CDS | 45.0% | |
| AATATGGTACCGCATACGGA+AGG | - | chr2.1:13541993-13542012 | MS.gene35936:CDS | 45.0% | |
| AATCTCAAAGTCTTCGCTGG+TGG | - | chr2.1:13542035-13542054 | MS.gene35936:CDS | 45.0% | |
| ACAAGGCTTGACGATGCAAA+AGG | + | chr2.1:13542773-13542792 | None:intergenic | 45.0% | |
| ATGCCAATTCCTTCCGTATG+CGG | + | chr2.1:13542005-13542024 | None:intergenic | 45.0% | |
| CAACAGAGTCATCAGATGCA+AGG | - | chr2.1:13542413-13542432 | MS.gene35936:intron | 45.0% | |
| CACCACATATCTGCAGAGAA+TGG | + | chr2.1:13542848-13542867 | None:intergenic | 45.0% | |
| CATAGGTAGAGTTGCAAAGG+TGG | - | chr2.1:13540485-13540504 | MS.gene35936:intron | 45.0% | |
| CTTGGCAATATAACTTGGCC+AGG | - | chr2.1:13542284-13542303 | MS.gene35936:intron | 45.0% | |
| GAGAATCTCAAAGTCTTCGC+TGG | - | chr2.1:13542032-13542051 | MS.gene35936:CDS | 45.0% | |
| GCAATATAACTTGGCCAGGT+GGG | - | chr2.1:13542288-13542307 | MS.gene35936:intron | 45.0% | |
| GCTCCAATGTTCACACTTTC+AGG | + | chr2.1:13540444-13540463 | None:intergenic | 45.0% | |
| GTTTCCGTAGATCAGAAGCT+TGG | - | chr2.1:13542266-13542285 | MS.gene35936:intron | 45.0% | |
| TAGAGTTGCAAAGGTGGCTA+TGG | - | chr2.1:13540491-13540510 | MS.gene35936:intron | 45.0% | |
| TCTGATCTACGGAAACCCTT+CGG | + | chr2.1:13542262-13542281 | None:intergenic | 45.0% | |
| TGAGCTATGGCAGATGATTG+TGG | + | chr2.1:13541261-13541280 | None:intergenic | 45.0% | |
| TGCAAAGGTGGCTATGGAAA+TGG | - | chr2.1:13540497-13540516 | MS.gene35936:intron | 45.0% | |
| TTTGGCACTCCTATTCTCAG+CGG | + | chr2.1:13542359-13542378 | None:intergenic | 45.0% | |
| ! | AGGCCTGAAAGTGTGAACAT+TGG | - | chr2.1:13540438-13540457 | MS.gene35936:intron | 45.0% |
| ! | CACGAAAGTCATCGTTGACT+CGG | + | chr2.1:13542925-13542944 | None:intergenic | 45.0% |
| ! | CGACTTTAACGGATGGAAAG+AGG | - | chr2.1:13541428-13541447 | MS.gene35936:CDS | 45.0% |
| ! | CTAAGAGAGTTCTGATTCGC+TGG | + | chr2.1:13541756-13541775 | None:intergenic | 45.0% |
| ! | CTTCACATTAAAGGCACGCA+TGG | + | chr2.1:13541090-13541109 | None:intergenic | 45.0% |
| ! | GCACCGACACTTCACATTAA+AGG | + | chr2.1:13541099-13541118 | None:intergenic | 45.0% |
| ! | GCTTTTCTTGGATCAACTGG+AGG | - | chr2.1:13540600-13540619 | MS.gene35936:CDS | 45.0% |
| ! | TTTTTCGCAAGAACTTCGGG+AGG | + | chr2.1:13542233-13542252 | None:intergenic | 45.0% |
| !! | TCAAATTTTAGGGGCCTGAG+TGG | - | chr2.1:13542086-13542105 | MS.gene35936:CDS | 45.0% |
| AATGCGAAGCCGCTGAGAAT+AGG | - | chr2.1:13542347-13542366 | MS.gene35936:intron | 50.0% | |
| CAAGGGGTTGCAGCCATAAT+TGG | - | chr2.1:13541234-13541253 | MS.gene35936:CDS | 50.0% | |
| CGAGTCAACGATGACTTTCG+TGG | - | chr2.1:13542923-13542942 | MS.gene35936:CDS | 50.0% | |
| CGCTGGCGAAACTGAATGTA+AGG | + | chr2.1:13541739-13541758 | None:intergenic | 50.0% | |
| GGCAATATAACTTGGCCAGG+TGG | - | chr2.1:13542287-13542306 | MS.gene35936:intron | 50.0% | |
| GTACCGCATACGGAAGGAAT+TGG | - | chr2.1:13541999-13542018 | MS.gene35936:CDS | 50.0% | |
| ! | AAGGGGAACATGGACTGCAT+CGG | + | chr2.1:13541301-13541320 | None:intergenic | 50.0% |
| ! | ACGTATGGCTTGCCACAGAT+TGG | - | chr2.1:13541703-13541722 | MS.gene35936:CDS | 50.0% |
| ! | GTCGATCAGATTGGCCATTG+CGG | + | chr2.1:13541412-13541431 | None:intergenic | 50.0% |
| CTCAGAGCAAATGGCCGCAA+TGG | - | chr2.1:13541395-13541414 | MS.gene35936:CDS | 55.0% | |
| GGGGCCTGAGTGGTCAAATT+CGG | - | chr2.1:13542096-13542115 | MS.gene35936:CDS | 55.0% | |
| GGTAGCAGAGAGCCAATCTG+TGG | + | chr2.1:13541718-13541737 | None:intergenic | 55.0% | |
| ! | GGTCGTTCTGTTTTCCCACC+TGG | + | chr2.1:13542305-13542324 | None:intergenic | 55.0% |
| GGGAAAACAGAACGACCGCG+CGG | - | chr2.1:13542308-13542327 | MS.gene35936:intron | 60.0% | |
| AAACAGAACGACCGCGCGGC+TGG | - | chr2.1:13542312-13542331 | MS.gene35936:intron | 65.0% | |
| AACAGAACGACCGCGCGGCT+GGG | - | chr2.1:13542313-13542332 | MS.gene35936:intron | 65.0% | |
| TCAGCAATCACCCAGCCGCG+CGG | + | chr2.1:13542326-13542345 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 13540363 | 13543099 | 13540363 | ID=MS.gene35936 |
| chr2.1 | mRNA | 13540363 | 13543099 | 13540363 | ID=MS.gene35936.t1;Parent=MS.gene35936 |
| chr2.1 | exon | 13542841 | 13543099 | 13542841 | ID=MS.gene35936.t1.exon1;Parent=MS.gene35936.t1 |
| chr2.1 | CDS | 13542841 | 13543099 | 13542841 | ID=cds.MS.gene35936.t1;Parent=MS.gene35936.t1 |
| chr2.1 | exon | 13540897 | 13542245 | 13540897 | ID=MS.gene35936.t1.exon2;Parent=MS.gene35936.t1 |
| chr2.1 | CDS | 13540897 | 13542245 | 13540897 | ID=cds.MS.gene35936.t1;Parent=MS.gene35936.t1 |
| chr2.1 | exon | 13540498 | 13540761 | 13540498 | ID=MS.gene35936.t1.exon3;Parent=MS.gene35936.t1 |
| chr2.1 | CDS | 13540498 | 13540761 | 13540498 | ID=cds.MS.gene35936.t1;Parent=MS.gene35936.t1 |
| chr2.1 | exon | 13540363 | 13540386 | 13540363 | ID=MS.gene35936.t1.exon4;Parent=MS.gene35936.t1 |
| chr2.1 | CDS | 13540363 | 13540386 | 13540363 | ID=cds.MS.gene35936.t1;Parent=MS.gene35936.t1 |
| Gene Sequence |
| Protein sequence |