Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36094.t1 | XP_013445316.1 | 97 | 525 | 16 | 0 | 1 | 525 | 1 | 525 | 1.50E-290 | 1008.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36094.t1 | Q9SA38 | 57.7 | 520 | 206 | 7 | 1 | 517 | 1 | 509 | 2.1e-163 | 577.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36094.t1 | A0A072TPM4 | 97.0 | 525 | 16 | 0 | 1 | 525 | 1 | 525 | 1.1e-290 | 1008.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064542 | MS.gene36094 | PPI |
| MS.gene73119 | MS.gene36094 | PPI |
| MS.gene035805 | MS.gene36094 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36094.t1 | MTR_8g447340 | 96.768 | 526 | 17 | 0 | 1 | 526 | 1 | 526 | 0.0 | 1030 |
| MS.gene36094.t1 | MTR_4g030040 | 44.727 | 512 | 271 | 5 | 11 | 521 | 8 | 508 | 4.35e-167 | 483 |
| MS.gene36094.t1 | MTR_4g030210 | 47.431 | 506 | 254 | 6 | 15 | 519 | 16 | 510 | 4.67e-167 | 483 |
| MS.gene36094.t1 | MTR_4g030040 | 45.040 | 504 | 265 | 5 | 19 | 521 | 15 | 507 | 2.30e-166 | 481 |
| MS.gene36094.t1 | MTR_8g039190 | 43.400 | 500 | 269 | 4 | 22 | 518 | 20 | 508 | 2.32e-154 | 451 |
| MS.gene36094.t1 | MTR_5g080050 | 44.980 | 498 | 263 | 4 | 32 | 525 | 28 | 518 | 8.24e-150 | 439 |
| MS.gene36094.t1 | MTR_5g082760 | 42.692 | 520 | 278 | 6 | 11 | 518 | 10 | 521 | 2.71e-145 | 428 |
| MS.gene36094.t1 | MTR_8g039070 | 38.196 | 521 | 271 | 7 | 8 | 525 | 7 | 479 | 1.22e-126 | 379 |
| MS.gene36094.t1 | MTR_2g081930 | 33.460 | 526 | 318 | 9 | 8 | 515 | 12 | 523 | 1.14e-79 | 259 |
| MS.gene36094.t1 | MTR_4g081490 | 32.727 | 385 | 233 | 5 | 151 | 521 | 75 | 447 | 4.56e-55 | 192 |
| MS.gene36094.t1 | MTR_2g081950 | 33.947 | 380 | 226 | 6 | 150 | 510 | 27 | 400 | 8.25e-51 | 179 |
| MS.gene36094.t1 | MTR_4g120720 | 32.155 | 283 | 156 | 6 | 104 | 382 | 16 | 266 | 1.50e-34 | 131 |
| MS.gene36094.t1 | MTR_4g005090 | 26.767 | 467 | 268 | 19 | 107 | 520 | 54 | 499 | 1.90e-18 | 88.6 |
| MS.gene36094.t1 | MTR_4g081480 | 31.387 | 137 | 84 | 3 | 5 | 141 | 18 | 144 | 3.55e-15 | 73.2 |
| MS.gene36094.t1 | MTR_2g081960 | 28.369 | 141 | 87 | 3 | 5 | 145 | 14 | 140 | 1.95e-13 | 68.2 |
| MS.gene36094.t1 | MTR_3g116060 | 32.051 | 156 | 101 | 2 | 139 | 289 | 51 | 206 | 2.84e-13 | 73.2 |
| MS.gene36094.t1 | MTR_2g020710 | 23.279 | 494 | 296 | 21 | 59 | 507 | 21 | 476 | 1.32e-11 | 67.4 |
| MS.gene36094.t1 | MTR_1g038600 | 25.641 | 273 | 177 | 10 | 149 | 403 | 85 | 349 | 2.28e-11 | 66.6 |
| MS.gene36094.t1 | MTR_4g118610 | 22.904 | 489 | 311 | 18 | 57 | 507 | 19 | 479 | 2.94e-11 | 66.2 |
| MS.gene36094.t1 | MTR_5g019870 | 25.112 | 446 | 264 | 17 | 114 | 509 | 49 | 474 | 4.79e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36094.t1 | AT1G16390 | 57.692 | 520 | 206 | 7 | 1 | 517 | 1 | 509 | 0.0 | 592 |
| MS.gene36094.t1 | AT1G79360 | 53.471 | 533 | 221 | 8 | 1 | 521 | 1 | 518 | 0.0 | 576 |
| MS.gene36094.t1 | AT1G16370 | 40.607 | 527 | 291 | 9 | 1 | 519 | 1 | 513 | 6.09e-138 | 409 |
| MS.gene36094.t1 | AT1G79410 | 41.109 | 523 | 288 | 7 | 1 | 519 | 1 | 507 | 9.64e-132 | 393 |
| MS.gene36094.t1 | AT1G73220 | 35.413 | 545 | 312 | 11 | 4 | 525 | 9 | 536 | 1.26e-104 | 324 |
| MS.gene36094.t1 | AT3G20660 | 31.151 | 504 | 311 | 9 | 32 | 519 | 38 | 521 | 1.14e-74 | 246 |
| MS.gene36094.t1 | AT3G51490 | 29.534 | 193 | 126 | 4 | 104 | 289 | 19 | 208 | 2.79e-14 | 76.3 |
| MS.gene36094.t1 | AT3G51490 | 29.534 | 193 | 126 | 4 | 104 | 289 | 19 | 208 | 2.96e-14 | 76.3 |
| MS.gene36094.t1 | AT3G51490 | 30.769 | 156 | 103 | 2 | 139 | 289 | 3 | 158 | 6.30e-14 | 75.1 |
| MS.gene36094.t1 | AT3G13050 | 23.241 | 469 | 289 | 16 | 107 | 521 | 48 | 499 | 1.56e-12 | 70.1 |
| MS.gene36094.t1 | AT3G13050 | 23.241 | 469 | 289 | 16 | 107 | 521 | 48 | 499 | 1.56e-12 | 70.1 |
| MS.gene36094.t1 | AT3G13050 | 23.241 | 469 | 289 | 16 | 107 | 521 | 48 | 499 | 1.56e-12 | 70.1 |
| MS.gene36094.t1 | AT3G13050 | 23.241 | 469 | 289 | 16 | 107 | 521 | 48 | 499 | 1.56e-12 | 70.1 |
| MS.gene36094.t1 | AT1G20840 | 28.205 | 156 | 107 | 2 | 139 | 289 | 51 | 206 | 2.87e-12 | 69.7 |
| MS.gene36094.t1 | AT1G20840 | 28.205 | 156 | 107 | 2 | 139 | 289 | 51 | 206 | 2.87e-12 | 69.7 |
| MS.gene36094.t1 | AT4G04760 | 24.099 | 444 | 264 | 21 | 104 | 507 | 50 | 460 | 2.34e-11 | 66.6 |
| MS.gene36094.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 99 | 508 | 4.57e-11 | 65.9 |
| MS.gene36094.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 55 | 464 | 5.70e-11 | 65.5 |
| MS.gene36094.t1 | AT4G04750 | 22.122 | 443 | 273 | 18 | 104 | 507 | 55 | 464 | 5.70e-11 | 65.5 |
| MS.gene36094.t1 | AT1G34580 | 23.185 | 427 | 288 | 18 | 122 | 518 | 28 | 444 | 9.65e-11 | 64.3 |
Find 116 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTGATGGATAAATTT+AGG | 0.186538 | 8.3:-52762794 | None:intergenic |
| AGAGAAGGAAAGTGTTTATT+TGG | 0.193783 | 8.3:-52761967 | None:intergenic |
| GGAATTGGAGTTGTCTATTA+TGG | 0.204957 | 8.3:+52762933 | MS.gene36094:CDS |
| GGAAATAAGTTTCTATGTTA+TGG | 0.222142 | 8.3:+52763332 | MS.gene36094:CDS |
| AAGGAGACTATTGTTGATTA+TGG | 0.235701 | 8.3:+52762899 | MS.gene36094:CDS |
| TCCAGCTTCCATGTTCTTCA+TGG | 0.236434 | 8.3:+52762293 | MS.gene36094:CDS |
| CTTCTTCTCAACTCTCTTGA+TGG | 0.244269 | 8.3:+52762386 | MS.gene36094:CDS |
| TTGATTATGGCATTAGGTTT+TGG | 0.258022 | 8.3:+52762912 | MS.gene36094:CDS |
| TCTTCATAGACAAGTTTAAA+AGG | 0.269222 | 8.3:+52763051 | MS.gene36094:CDS |
| TCATTGCTTAAATTCTTATC+TGG | 0.270363 | 8.3:+52762456 | MS.gene36094:CDS |
| TTCCCATAGGCTCGTGGGCT+TGG | 0.272659 | 8.3:+52762199 | MS.gene36094:CDS |
| TAAAATTTCCTGTGACATAT+TGG | 0.281278 | 8.3:+52763460 | MS.gene36094:CDS |
| CTTAAATTCTTATCTGGATT+CGG | 0.317876 | 8.3:+52762462 | MS.gene36094:CDS |
| CCACTTTCTCTCCCAACATT+TGG | 0.321257 | 8.3:+52762427 | MS.gene36094:CDS |
| GAAATAAGTTTCTATGTTAT+GGG | 0.328881 | 8.3:+52763333 | MS.gene36094:CDS |
| CTATGGAGCAAGATGCAAAT+AGG | 0.330548 | 8.3:+52763143 | MS.gene36094:CDS |
| TTCTTCATGGGCTGCTTAGT+TGG | 0.349969 | 8.3:+52762306 | MS.gene36094:CDS |
| ATCCCAAGCCCACGAGCCTA+TGG | 0.351649 | 8.3:-52762202 | None:intergenic |
| CTCTTCTTATATCCTTTGCT+TGG | 0.354094 | 8.3:+52762046 | MS.gene36094:CDS |
| TTTGTGTCACTAGTGTTATT+GGG | 0.359751 | 8.3:-52761937 | None:intergenic |
| TCCCATAGGCTCGTGGGCTT+GGG | 0.365125 | 8.3:+52762200 | MS.gene36094:CDS |
| CCACTATTGAAGGGGAACTA+TGG | 0.368908 | 8.3:+52763126 | MS.gene36094:CDS |
| CTATTGTTGATTATGGCATT+AGG | 0.382177 | 8.3:+52762906 | MS.gene36094:CDS |
| CCAGCTTCCATGTTCTTCAT+GGG | 0.386628 | 8.3:+52762294 | MS.gene36094:CDS |
| AATAAACACTTTCCTTCTCT+TGG | 0.390864 | 8.3:+52761970 | MS.gene36094:CDS |
| CCTAGATGGCTTCTATTAAG+AGG | 0.400036 | 8.3:+52762714 | MS.gene36094:CDS |
| TTTCTTGTCCCTTCCTGCTA+TGG | 0.406080 | 8.3:+52762590 | MS.gene36094:CDS |
| TCGTTCAAGAATCACCTAGA+TGG | 0.406654 | 8.3:+52762700 | MS.gene36094:CDS |
| TCATGGGCTGCTTAGTTGGT+GGG | 0.411276 | 8.3:+52762310 | MS.gene36094:CDS |
| CGAGGTAAGATTAGTGTCAT+AGG | 0.416527 | 8.3:+52762546 | MS.gene36094:CDS |
| TATGGTATGCCACTAGGTCT+TGG | 0.417877 | 8.3:+52762951 | MS.gene36094:CDS |
| AGTGCATAGGTGAACTCAAT+TGG | 0.418129 | 8.3:+52762007 | MS.gene36094:CDS |
| CTCACACTGCATGGCCCATT+CGG | 0.418591 | 8.3:-52762250 | None:intergenic |
| ATAGGCTCGTGGGCTTGGGA+TGG | 0.423347 | 8.3:+52762204 | MS.gene36094:CDS |
| GCTAGGCTTGCCGTGGTGTT+TGG | 0.423562 | 8.3:+52763272 | MS.gene36094:CDS |
| ATGTGAAGACATATTGTTGA+TGG | 0.423829 | 8.3:-52762805 | None:intergenic |
| AGCATGCAATAGAATATTGT+TGG | 0.425151 | 8.3:-52762666 | None:intergenic |
| CCTCTTAATAGAAGCCATCT+AGG | 0.428587 | 8.3:-52762714 | None:intergenic |
| TAGGCTCGTGGGCTTGGGAT+GGG | 0.437513 | 8.3:+52762205 | MS.gene36094:CDS |
| CCATAGTTCCCCTTCAATAG+TGG | 0.437796 | 8.3:-52763126 | None:intergenic |
| TGAAGATGGTATCTCACTTA+AGG | 0.447007 | 8.3:-52763015 | None:intergenic |
| AGTCCATTGTTGGTGGGTGC+TGG | 0.448528 | 8.3:+52763305 | MS.gene36094:CDS |
| AAGTGAGATACCATCTTCAT+TGG | 0.448817 | 8.3:+52763019 | MS.gene36094:CDS |
| TATGGAGCAAGATGCAAATA+GGG | 0.452258 | 8.3:+52763144 | MS.gene36094:CDS |
| TTCATGGGCTGCTTAGTTGG+TGG | 0.452866 | 8.3:+52762309 | MS.gene36094:CDS |
| GGCTTCCATCATATCCGAAT+GGG | 0.456111 | 8.3:+52762236 | MS.gene36094:CDS |
| GTGTTCTTACCTGAGACAAA+AGG | 0.458209 | 8.3:+52763395 | MS.gene36094:CDS |
| GACACTTAAGTAAAGATTGA+AGG | 0.467256 | 8.3:-52762982 | None:intergenic |
| AATGAGTATATCCAAATGTT+GGG | 0.467801 | 8.3:-52762438 | None:intergenic |
| GGCTTGGGATGGGCCAGCAC+AGG | 0.468146 | 8.3:+52762215 | MS.gene36094:CDS |
| GGATTCGGCCGCGCTACCAT+TGG | 0.476400 | 8.3:+52762477 | MS.gene36094:CDS |
| AACAATATTCTATTGCATGC+TGG | 0.482834 | 8.3:+52762668 | MS.gene36094:CDS |
| CAATGAGTATATCCAAATGT+TGG | 0.485248 | 8.3:-52762439 | None:intergenic |
| AGTATAATGTCCACTATTGA+AGG | 0.485637 | 8.3:+52763116 | MS.gene36094:CDS |
| TGTCACTAGTGTTATTGGGT+TGG | 0.486594 | 8.3:-52761933 | None:intergenic |
| TCACCGATGCACTTCCATCA+TGG | 0.492497 | 8.3:+52762103 | MS.gene36094:CDS |
| AGGCTTGCCGTGGTGTTTGG+TGG | 0.494688 | 8.3:+52763275 | MS.gene36094:CDS |
| CCAAATGTTGGGAGAGAAAG+TGG | 0.497730 | 8.3:-52762427 | None:intergenic |
| GGTTGGCTCAGAAGAGGAGT+TGG | 0.504676 | 8.3:-52761916 | None:intergenic |
| CATGGCCCATTCGGATATGA+TGG | 0.507258 | 8.3:-52762241 | None:intergenic |
| CCCATGAAGAACATGGAAGC+TGG | 0.514638 | 8.3:-52762294 | None:intergenic |
| GCTGAATTCCTCACACAAGT+TGG | 0.519274 | 8.3:-52763239 | None:intergenic |
| GAATTGATGTCCACAAGTAA+AGG | 0.520340 | 8.3:-52762644 | None:intergenic |
| TCACCGGTGCAGTGCCATGA+TGG | 0.520447 | 8.3:-52762117 | None:intergenic |
| TTGTTTGCATAAGCCATAGC+AGG | 0.520590 | 8.3:-52762603 | None:intergenic |
| GAGGAATTCAGCTTTGTCAA+TGG | 0.524056 | 8.3:+52763250 | MS.gene36094:CDS |
| CAAAGGATATAAGAAGAGCT+TGG | 0.524935 | 8.3:-52762041 | None:intergenic |
| ATTCAGCTTTGTCAATGGCT+AGG | 0.528692 | 8.3:+52763255 | MS.gene36094:CDS |
| CTTGCAGACTCCTCATCACT+TGG | 0.534230 | 8.3:+52762348 | MS.gene36094:CDS |
| GTTCTAGCTTCCGAGCTCGT+TGG | 0.537522 | 8.3:+52762513 | MS.gene36094:CDS |
| TTGTTGGTGGGTGCTGGTAG+AGG | 0.538136 | 8.3:+52763311 | MS.gene36094:CDS |
| TGTTCTTACCTGAGACAAAA+GGG | 0.538318 | 8.3:+52763396 | MS.gene36094:CDS |
| CCATCGCTTTCCAACGAGCT+CGG | 0.545161 | 8.3:-52762523 | None:intergenic |
| GATATGATGGAAGCCTGTGC+TGG | 0.549688 | 8.3:-52762228 | None:intergenic |
| CTTCCATCATGGCACTGCAC+CGG | 0.552872 | 8.3:+52762114 | MS.gene36094:CDS |
| TCAATTGTGAAGCCAAGAGA+AGG | 0.553764 | 8.3:-52761982 | None:intergenic |
| AGAGAAAGTGGTGAAGAATG+AGG | 0.554837 | 8.3:-52762415 | None:intergenic |
| GCTTCAAGCCAATATGTCAC+AGG | 0.560878 | 8.3:-52763468 | None:intergenic |
| TGCATAAGCCATAGCAGGAA+GGG | 0.561241 | 8.3:-52762598 | None:intergenic |
| CTACCAGCACCCACCAACAA+TGG | 0.564182 | 8.3:-52763308 | None:intergenic |
| CTAGATGGCTTCTATTAAGA+GGG | 0.564349 | 8.3:+52762715 | MS.gene36094:CDS |
| TCCCAAGCCCACGAGCCTAT+GGG | 0.572400 | 8.3:-52762201 | None:intergenic |
| TGCAAAAGAAATGGTCCTCA+AGG | 0.573559 | 8.3:+52762880 | MS.gene36094:CDS |
| GTCTATTATGGTATGCCACT+AGG | 0.573826 | 8.3:+52762945 | MS.gene36094:CDS |
| ATGCAAACAAAACTTCCTCA+TGG | 0.576345 | 8.3:+52762616 | MS.gene36094:CDS |
| TAAGTTTCCCATAGGCTCGT+GGG | 0.583541 | 8.3:+52762194 | MS.gene36094:CDS |
| CCGAGCTCGTTGGAAAGCGA+TGG | 0.585244 | 8.3:+52762523 | MS.gene36094:CDS |
| GTAAGTTTCCCATAGGCTCG+TGG | 0.586368 | 8.3:+52762193 | MS.gene36094:CDS |
| CTCGTTGGAAAGCGATGGCG+AGG | 0.587564 | 8.3:+52762528 | MS.gene36094:CDS |
| TGTGAGAGCTCTATCATCAC+AGG | 0.588393 | 8.3:+52762267 | MS.gene36094:CDS |
| TGCATCAAAGATCCAAGCAA+AGG | 0.595046 | 8.3:-52762058 | None:intergenic |
| GTCAATGGCTAGGCTTGCCG+TGG | 0.599040 | 8.3:+52763265 | MS.gene36094:CDS |
| AGGCTTCCATCATATCCGAA+TGG | 0.600731 | 8.3:+52762235 | MS.gene36094:CDS |
| GATAGAGCTCTCACACTGCA+TGG | 0.601824 | 8.3:-52762259 | None:intergenic |
| TTGCATAAGCCATAGCAGGA+AGG | 0.604966 | 8.3:-52762599 | None:intergenic |
| AACAAGCGATGAAGTGCCAA+TGG | 0.607201 | 8.3:-52762493 | None:intergenic |
| GTATAATGTCCACTATTGAA+GGG | 0.609508 | 8.3:+52763117 | MS.gene36094:CDS |
| TTATTGGGTTGGCTCAGAAG+AGG | 0.610379 | 8.3:-52761922 | None:intergenic |
| GAGAGCACTTTGTGATACAA+TGG | 0.611380 | 8.3:+52763418 | MS.gene36094:CDS |
| CAACAATATGTCTTCACATG+AGG | 0.611494 | 8.3:+52762809 | MS.gene36094:CDS |
| TAAGCAGCCCATGAAGAACA+TGG | 0.612165 | 8.3:-52762301 | None:intergenic |
| TGATGAGGAGTCTGCAAGTG+TGG | 0.615473 | 8.3:-52762343 | None:intergenic |
| TGAAGAACATGGAAGCTGGA+AGG | 0.616002 | 8.3:-52762290 | None:intergenic |
| GATGTGTGTAAGTTTCCCAT+AGG | 0.622795 | 8.3:+52762186 | MS.gene36094:CDS |
| CATGGAGGAACCTTTACTTG+TGG | 0.625267 | 8.3:+52762634 | MS.gene36094:CDS |
| GTTCTTGCGACCAAGTGATG+AGG | 0.632393 | 8.3:-52762358 | None:intergenic |
| TATAATGTCCACTATTGAAG+GGG | 0.638910 | 8.3:+52763118 | MS.gene36094:CDS |
| GATAAGTTTCCAAGACCTAG+TGG | 0.640382 | 8.3:-52762960 | None:intergenic |
| TTCACAATTGAAAAGTGCAT+AGG | 0.646323 | 8.3:+52761994 | MS.gene36094:CDS |
| ATGAAGTGCCAATGGTAGCG+CGG | 0.653276 | 8.3:-52762485 | None:intergenic |
| CAAGTAAAGGTTCCTCCATG+AGG | 0.657990 | 8.3:-52762631 | None:intergenic |
| AATCAACAATAGTCTCCTTG+AGG | 0.659489 | 8.3:-52762895 | None:intergenic |
| AATTGTTTCCAACTTGTGTG+AGG | 0.667556 | 8.3:+52763231 | MS.gene36094:CDS |
| GTGCCATGATGGAAGTGCAT+CGG | 0.671550 | 8.3:-52762106 | None:intergenic |
| AAAAGCTCCACCAAACACCA+CGG | 0.682021 | 8.3:-52763282 | None:intergenic |
| CAAACAAAACTTCCTCATGG+AGG | 0.705134 | 8.3:+52762619 | MS.gene36094:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATAAGTTTCTATGTTAT+GGG | + | chr8.3:52763333-52763352 | MS.gene36094:CDS | 20.0% |
| !!! | TATTGTTGATGGATAAATTT+AGG | - | chr8.3:52762797-52762816 | None:intergenic | 20.0% |
| ! | AAAAATGTTACCAATGAAGA+TGG | - | chr8.3:52763032-52763051 | None:intergenic | 25.0% |
| ! | AATGAGTATATCCAAATGTT+GGG | - | chr8.3:52762441-52762460 | None:intergenic | 25.0% |
| ! | CTTAAATTCTTATCTGGATT+CGG | + | chr8.3:52762462-52762481 | MS.gene36094:CDS | 25.0% |
| ! | GGAAATAAGTTTCTATGTTA+TGG | + | chr8.3:52763332-52763351 | MS.gene36094:CDS | 25.0% |
| ! | TAAAATTTCCTGTGACATAT+TGG | + | chr8.3:52763460-52763479 | MS.gene36094:CDS | 25.0% |
| ! | TCATTGCTTAAATTCTTATC+TGG | + | chr8.3:52762456-52762475 | MS.gene36094:CDS | 25.0% |
| ! | TCTTCATAGACAAGTTTAAA+AGG | + | chr8.3:52763051-52763070 | MS.gene36094:CDS | 25.0% |
| !! | AACTTTTGTTGCAAAAGAAA+TGG | + | chr8.3:52762871-52762890 | MS.gene36094:CDS | 25.0% |
| !! | TTTGTGTTTTGTATCATAAG+TGG | + | chr8.3:52763086-52763105 | MS.gene36094:CDS | 25.0% |
| !!! | TTCTATGTTATGGGTTTTTT+GGG | + | chr8.3:52763342-52763361 | MS.gene36094:CDS | 25.0% |
| !!! | TTTCTATGTTATGGGTTTTT+TGG | + | chr8.3:52763341-52763360 | MS.gene36094:CDS | 25.0% |
| AACAATATTCTATTGCATGC+TGG | + | chr8.3:52762668-52762687 | MS.gene36094:CDS | 30.0% | |
| AATAAACACTTTCCTTCTCT+TGG | + | chr8.3:52761970-52761989 | MS.gene36094:CDS | 30.0% | |
| AGCATGCAATAGAATATTGT+TGG | - | chr8.3:52762669-52762688 | None:intergenic | 30.0% | |
| AGTATAATGTCCACTATTGA+AGG | + | chr8.3:52763116-52763135 | MS.gene36094:CDS | 30.0% | |
| ATGTGAAGACATATTGTTGA+TGG | - | chr8.3:52762808-52762827 | None:intergenic | 30.0% | |
| CAATGAGTATATCCAAATGT+TGG | - | chr8.3:52762442-52762461 | None:intergenic | 30.0% | |
| GACACTTAAGTAAAGATTGA+AGG | - | chr8.3:52762985-52763004 | None:intergenic | 30.0% | |
| GTATAATGTCCACTATTGAA+GGG | + | chr8.3:52763117-52763136 | MS.gene36094:CDS | 30.0% | |
| TATAATGTCCACTATTGAAG+GGG | + | chr8.3:52763118-52763137 | MS.gene36094:CDS | 30.0% | |
| TCTATTAAGAGGGAAAAAAG+AGG | + | chr8.3:52762725-52762744 | MS.gene36094:CDS | 30.0% | |
| ! | AAGGAGACTATTGTTGATTA+TGG | + | chr8.3:52762899-52762918 | MS.gene36094:CDS | 30.0% |
| ! | CTATTGTTGATTATGGCATT+AGG | + | chr8.3:52762906-52762925 | MS.gene36094:CDS | 30.0% |
| ! | CTTTTGCAACAAAAGTTTGA+GGG | - | chr8.3:52762868-52762887 | None:intergenic | 30.0% |
| ! | GAAAACACTGAGATTTTGAA+TGG | + | chr8.3:52762138-52762157 | MS.gene36094:CDS | 30.0% |
| ! | TCTTTTGCAACAAAAGTTTG+AGG | - | chr8.3:52762869-52762888 | None:intergenic | 30.0% |
| ! | TTCACAATTGAAAAGTGCAT+AGG | + | chr8.3:52761994-52762013 | MS.gene36094:CDS | 30.0% |
| ! | TTGATTATGGCATTAGGTTT+TGG | + | chr8.3:52762912-52762931 | MS.gene36094:CDS | 30.0% |
| ! | TTTGTGTCACTAGTGTTATT+GGG | - | chr8.3:52761940-52761959 | None:intergenic | 30.0% |
| !! | AGAGAAGGAAAGTGTTTATT+TGG | - | chr8.3:52761970-52761989 | None:intergenic | 30.0% |
| !! | GGTTTCTTTTGTTTCACTAT+AGG | + | chr8.3:52762567-52762586 | MS.gene36094:CDS | 30.0% |
| !! | TTTTGTGTCACTAGTGTTAT+TGG | - | chr8.3:52761941-52761960 | None:intergenic | 30.0% |
| AAGTGAGATACCATCTTCAT+TGG | + | chr8.3:52763019-52763038 | MS.gene36094:CDS | 35.0% | |
| AATCAACAATAGTCTCCTTG+AGG | - | chr8.3:52762898-52762917 | None:intergenic | 35.0% | |
| AATTGTTTCCAACTTGTGTG+AGG | + | chr8.3:52763231-52763250 | MS.gene36094:CDS | 35.0% | |
| ATGCAAACAAAACTTCCTCA+TGG | + | chr8.3:52762616-52762635 | MS.gene36094:CDS | 35.0% | |
| CAAAGGATATAAGAAGAGCT+TGG | - | chr8.3:52762044-52762063 | None:intergenic | 35.0% | |
| CAACAATATGTCTTCACATG+AGG | + | chr8.3:52762809-52762828 | MS.gene36094:CDS | 35.0% | |
| CTAGATGGCTTCTATTAAGA+GGG | + | chr8.3:52762715-52762734 | MS.gene36094:CDS | 35.0% | |
| CTCTTCTTATATCCTTTGCT+TGG | + | chr8.3:52762046-52762065 | MS.gene36094:CDS | 35.0% | |
| GAATTGATGTCCACAAGTAA+AGG | - | chr8.3:52762647-52762666 | None:intergenic | 35.0% | |
| GGAATTGGAGTTGTCTATTA+TGG | + | chr8.3:52762933-52762952 | MS.gene36094:CDS | 35.0% | |
| TATGGAGCAAGATGCAAATA+GGG | + | chr8.3:52763144-52763163 | MS.gene36094:CDS | 35.0% | |
| TGAAGATGGTATCTCACTTA+AGG | - | chr8.3:52763018-52763037 | None:intergenic | 35.0% | |
| TGTTCTTACCTGAGACAAAA+GGG | + | chr8.3:52763396-52763415 | MS.gene36094:CDS | 35.0% | |
| ! | CAAAATCTCAGTGTTTTCAC+CGG | - | chr8.3:52762136-52762155 | None:intergenic | 35.0% |
| !!! | ATGGCATTAGGTTTTGGAAT+TGG | + | chr8.3:52762918-52762937 | MS.gene36094:CDS | 35.0% |
| !!! | ATGTTATGGGTTTTTTGGGT+TGG | + | chr8.3:52763346-52763365 | MS.gene36094:CDS | 35.0% |
| !!! | ATTGGTTTTAGTGGAGTGTT+TGG | + | chr8.3:52763371-52763390 | MS.gene36094:CDS | 35.0% |
| AGAGAAAGTGGTGAAGAATG+AGG | - | chr8.3:52762418-52762437 | None:intergenic | 40.0% | |
| AGTGCATAGGTGAACTCAAT+TGG | + | chr8.3:52762007-52762026 | MS.gene36094:CDS | 40.0% | |
| CAAACAAAACTTCCTCATGG+AGG | + | chr8.3:52762619-52762638 | MS.gene36094:CDS | 40.0% | |
| CCTAGATGGCTTCTATTAAG+AGG | + | chr8.3:52762714-52762733 | MS.gene36094:CDS | 40.0% | |
| CCTCTTAATAGAAGCCATCT+AGG | - | chr8.3:52762717-52762736 | None:intergenic | 40.0% | |
| CGAGGTAAGATTAGTGTCAT+AGG | + | chr8.3:52762546-52762565 | MS.gene36094:CDS | 40.0% | |
| CTATGGAGCAAGATGCAAAT+AGG | + | chr8.3:52763143-52763162 | MS.gene36094:CDS | 40.0% | |
| CTTCTTCTCAACTCTCTTGA+TGG | + | chr8.3:52762386-52762405 | MS.gene36094:CDS | 40.0% | |
| GATAAGTTTCCAAGACCTAG+TGG | - | chr8.3:52762963-52762982 | None:intergenic | 40.0% | |
| GATGTGTGTAAGTTTCCCAT+AGG | + | chr8.3:52762186-52762205 | MS.gene36094:CDS | 40.0% | |
| GTCTATTATGGTATGCCACT+AGG | + | chr8.3:52762945-52762964 | MS.gene36094:CDS | 40.0% | |
| GTGTTCTTACCTGAGACAAA+AGG | + | chr8.3:52763395-52763414 | MS.gene36094:CDS | 40.0% | |
| TCAATTGTGAAGCCAAGAGA+AGG | - | chr8.3:52761985-52762004 | None:intergenic | 40.0% | |
| TCGTTCAAGAATCACCTAGA+TGG | + | chr8.3:52762700-52762719 | MS.gene36094:CDS | 40.0% | |
| TGCAAAAGAAATGGTCCTCA+AGG | + | chr8.3:52762880-52762899 | MS.gene36094:CDS | 40.0% | |
| TGCATCAAAGATCCAAGCAA+AGG | - | chr8.3:52762061-52762080 | None:intergenic | 40.0% | |
| TTGTTTGCATAAGCCATAGC+AGG | - | chr8.3:52762606-52762625 | None:intergenic | 40.0% | |
| ! | AGCTTTTAGTCCATTGTTGG+TGG | + | chr8.3:52763298-52763317 | MS.gene36094:CDS | 40.0% |
| ! | ATTCAGCTTTGTCAATGGCT+AGG | + | chr8.3:52763255-52763274 | MS.gene36094:CDS | 40.0% |
| ! | GAGGAATTCAGCTTTGTCAA+TGG | + | chr8.3:52763250-52763269 | MS.gene36094:CDS | 40.0% |
| ! | GCTTTTAGTCCATTGTTGGT+GGG | + | chr8.3:52763299-52763318 | MS.gene36094:CDS | 40.0% |
| ! | TGGAGCTTTTAGTCCATTGT+TGG | + | chr8.3:52763295-52763314 | MS.gene36094:CDS | 40.0% |
| ! | TGTCACTAGTGTTATTGGGT+TGG | - | chr8.3:52761936-52761955 | None:intergenic | 40.0% |
| !! | GAGAGCACTTTGTGATACAA+TGG | + | chr8.3:52763418-52763437 | MS.gene36094:CDS | 40.0% |
| AAAAGCTCCACCAAACACCA+CGG | - | chr8.3:52763285-52763304 | None:intergenic | 45.0% | |
| AGGCTTCCATCATATCCGAA+TGG | + | chr8.3:52762235-52762254 | MS.gene36094:CDS | 45.0% | |
| CAAGTAAAGGTTCCTCCATG+AGG | - | chr8.3:52762634-52762653 | None:intergenic | 45.0% | |
| CATGGAGGAACCTTTACTTG+TGG | + | chr8.3:52762634-52762653 | MS.gene36094:CDS | 45.0% | |
| CCAAATGTTGGGAGAGAAAG+TGG | - | chr8.3:52762430-52762449 | None:intergenic | 45.0% | |
| CCACTATTGAAGGGGAACTA+TGG | + | chr8.3:52763126-52763145 | MS.gene36094:CDS | 45.0% | |
| CCACTTTCTCTCCCAACATT+TGG | + | chr8.3:52762427-52762446 | MS.gene36094:CDS | 45.0% | |
| CCAGCTTCCATGTTCTTCAT+GGG | + | chr8.3:52762294-52762313 | MS.gene36094:CDS | 45.0% | |
| CCATAGTTCCCCTTCAATAG+TGG | - | chr8.3:52763129-52763148 | None:intergenic | 45.0% | |
| GCTGAATTCCTCACACAAGT+TGG | - | chr8.3:52763242-52763261 | None:intergenic | 45.0% | |
| GGCTTCCATCATATCCGAAT+GGG | + | chr8.3:52762236-52762255 | MS.gene36094:CDS | 45.0% | |
| TAAGCAGCCCATGAAGAACA+TGG | - | chr8.3:52762304-52762323 | None:intergenic | 45.0% | |
| TAAGTTTCCCATAGGCTCGT+GGG | + | chr8.3:52762194-52762213 | MS.gene36094:CDS | 45.0% | |
| TATGGTATGCCACTAGGTCT+TGG | + | chr8.3:52762951-52762970 | MS.gene36094:CDS | 45.0% | |
| TCCAGCTTCCATGTTCTTCA+TGG | + | chr8.3:52762293-52762312 | MS.gene36094:CDS | 45.0% | |
| TGAAGAACATGGAAGCTGGA+AGG | - | chr8.3:52762293-52762312 | None:intergenic | 45.0% | |
| TGCATAAGCCATAGCAGGAA+GGG | - | chr8.3:52762601-52762620 | None:intergenic | 45.0% | |
| TGTGAGAGCTCTATCATCAC+AGG | + | chr8.3:52762267-52762286 | MS.gene36094:CDS | 45.0% | |
| TTGCATAAGCCATAGCAGGA+AGG | - | chr8.3:52762602-52762621 | None:intergenic | 45.0% | |
| TTTCTTGTCCCTTCCTGCTA+TGG | + | chr8.3:52762590-52762609 | MS.gene36094:CDS | 45.0% | |
| ! | AACAAGCGATGAAGTGCCAA+TGG | - | chr8.3:52762496-52762515 | None:intergenic | 45.0% |
| ! | TTCTTCATGGGCTGCTTAGT+TGG | + | chr8.3:52762306-52762325 | MS.gene36094:CDS | 45.0% |
| !! | TTATTGGGTTGGCTCAGAAG+AGG | - | chr8.3:52761925-52761944 | None:intergenic | 45.0% |
| !!! | GGGTTGGCTATTGGTTTTAG+TGG | + | chr8.3:52763362-52763381 | MS.gene36094:CDS | 45.0% |
| !!! | GGGTTTTTTGGGTTGGCTAT+TGG | + | chr8.3:52763353-52763372 | MS.gene36094:CDS | 45.0% |
| CATGGCCCATTCGGATATGA+TGG | - | chr8.3:52762244-52762263 | None:intergenic | 50.0% | |
| CCCATGAAGAACATGGAAGC+TGG | - | chr8.3:52762297-52762316 | None:intergenic | 50.0% | |
| CTTGCAGACTCCTCATCACT+TGG | + | chr8.3:52762348-52762367 | MS.gene36094:CDS | 50.0% | |
| GATAGAGCTCTCACACTGCA+TGG | - | chr8.3:52762262-52762281 | None:intergenic | 50.0% | |
| GTAAGTTTCCCATAGGCTCG+TGG | + | chr8.3:52762193-52762212 | MS.gene36094:CDS | 50.0% | |
| GTTCTTGCGACCAAGTGATG+AGG | - | chr8.3:52762361-52762380 | None:intergenic | 50.0% | |
| TCACCGATGCACTTCCATCA+TGG | + | chr8.3:52762103-52762122 | MS.gene36094:CDS | 50.0% | |
| TGATGAGGAGTCTGCAAGTG+TGG | - | chr8.3:52762346-52762365 | None:intergenic | 50.0% | |
| ! | AGTGCTCTCCCTTTTGTCTC+AGG | - | chr8.3:52763407-52763426 | None:intergenic | 50.0% |
| ! | ATGAAGTGCCAATGGTAGCG+CGG | - | chr8.3:52762488-52762507 | None:intergenic | 50.0% |
| ! | GATATGATGGAAGCCTGTGC+TGG | - | chr8.3:52762231-52762250 | None:intergenic | 50.0% |
| ! | GTGCCATGATGGAAGTGCAT+CGG | - | chr8.3:52762109-52762128 | None:intergenic | 50.0% |
| ! | TCATGGGCTGCTTAGTTGGT+GGG | + | chr8.3:52762310-52762329 | MS.gene36094:CDS | 50.0% |
| ! | TTCATGGGCTGCTTAGTTGG+TGG | + | chr8.3:52762309-52762328 | MS.gene36094:CDS | 50.0% |
| CCATCGCTTTCCAACGAGCT+CGG | - | chr8.3:52762526-52762545 | None:intergenic | 55.0% | |
| CTACCAGCACCCACCAACAA+TGG | - | chr8.3:52763311-52763330 | None:intergenic | 55.0% | |
| CTCACACTGCATGGCCCATT+CGG | - | chr8.3:52762253-52762272 | None:intergenic | 55.0% | |
| CTTCCATCATGGCACTGCAC+CGG | + | chr8.3:52762114-52762133 | MS.gene36094:CDS | 55.0% | |
| ! | AGTCCATTGTTGGTGGGTGC+TGG | + | chr8.3:52763305-52763324 | MS.gene36094:CDS | 55.0% |
| ! | GGTTGGCTCAGAAGAGGAGT+TGG | - | chr8.3:52761919-52761938 | None:intergenic | 55.0% |
| !! | GTTCTAGCTTCCGAGCTCGT+TGG | + | chr8.3:52762513-52762532 | MS.gene36094:CDS | 55.0% |
| !! | TTGTTGGTGGGTGCTGGTAG+AGG | + | chr8.3:52763311-52763330 | MS.gene36094:CDS | 55.0% |
| AGGCTTGCCGTGGTGTTTGG+TGG | + | chr8.3:52763275-52763294 | MS.gene36094:CDS | 60.0% | |
| ATAGGCTCGTGGGCTTGGGA+TGG | + | chr8.3:52762204-52762223 | MS.gene36094:CDS | 60.0% | |
| ATCCCAAGCCCACGAGCCTA+TGG | - | chr8.3:52762205-52762224 | None:intergenic | 60.0% | |
| CCGAGCTCGTTGGAAAGCGA+TGG | + | chr8.3:52762523-52762542 | MS.gene36094:CDS | 60.0% | |
| CTCGTTGGAAAGCGATGGCG+AGG | + | chr8.3:52762528-52762547 | MS.gene36094:CDS | 60.0% | |
| GCTAGGCTTGCCGTGGTGTT+TGG | + | chr8.3:52763272-52763291 | MS.gene36094:CDS | 60.0% | |
| GTCAATGGCTAGGCTTGCCG+TGG | + | chr8.3:52763265-52763284 | MS.gene36094:CDS | 60.0% | |
| TAGGCTCGTGGGCTTGGGAT+GGG | + | chr8.3:52762205-52762224 | MS.gene36094:CDS | 60.0% | |
| TCACCGGTGCAGTGCCATGA+TGG | - | chr8.3:52762120-52762139 | None:intergenic | 60.0% | |
| TCCCAAGCCCACGAGCCTAT+GGG | - | chr8.3:52762204-52762223 | None:intergenic | 60.0% | |
| TCCCATAGGCTCGTGGGCTT+GGG | + | chr8.3:52762200-52762219 | MS.gene36094:CDS | 60.0% | |
| TTCCCATAGGCTCGTGGGCT+TGG | + | chr8.3:52762199-52762218 | MS.gene36094:CDS | 60.0% | |
| GGATTCGGCCGCGCTACCAT+TGG | + | chr8.3:52762477-52762496 | MS.gene36094:CDS | 65.0% | |
| GGCTTGGGATGGGCCAGCAC+AGG | + | chr8.3:52762215-52762234 | MS.gene36094:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52761907 | 52763487 | 52761907 | ID=MS.gene36094 |
| chr8.3 | mRNA | 52761907 | 52763487 | 52761907 | ID=MS.gene36094.t1;Parent=MS.gene36094 |
| chr8.3 | exon | 52761907 | 52763487 | 52761907 | ID=MS.gene36094.t1.exon1;Parent=MS.gene36094.t1 |
| chr8.3 | CDS | 52761907 | 52763487 | 52761907 | ID=cds.MS.gene36094.t1;Parent=MS.gene36094.t1 |
| Gene Sequence |
| Protein sequence |
