Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36244.t1 | XP_003597841.1 | 84.1 | 176 | 1 | 2 | 1 | 175 | 1 | 150 | 1.20E-77 | 299.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36244.t1 | Q9SSB8 | 61.1 | 175 | 58 | 4 | 1 | 174 | 1 | 166 | 8.9e-50 | 198.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36244.t1 | G7IMH7 | 84.1 | 176 | 1 | 2 | 1 | 175 | 1 | 150 | 8.5e-78 | 299.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05212 | MS.gene36244 | 0.827561 | 1.46E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36244.t1 | MTR_2g103150 | 84.091 | 176 | 1 | 2 | 1 | 175 | 1 | 150 | 1.30e-101 | 289 |
MS.gene36244.t1 | MTR_4g011340 | 67.241 | 174 | 32 | 4 | 1 | 174 | 1 | 149 | 1.04e-72 | 216 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36244.t1 | AT1G80230 | 60.241 | 166 | 56 | 4 | 1 | 165 | 1 | 157 | 1.11e-59 | 183 |
MS.gene36244.t1 | AT3G15640 | 59.524 | 168 | 55 | 5 | 1 | 165 | 1 | 158 | 1.43e-52 | 166 |
MS.gene36244.t1 | AT3G15640 | 54.913 | 173 | 54 | 4 | 1 | 165 | 1 | 157 | 2.17e-51 | 162 |
MS.gene36244.t1 | AT1G52710 | 59.302 | 86 | 35 | 0 | 90 | 175 | 4 | 89 | 2.35e-33 | 114 |
Find 58 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCATGATGTTGTCTGGTTT+TGG | 0.271011 | 2.1:-2540670 | MS.gene36244:CDS |
GATGAGAATGAGATGAAGTT+AGG | 0.288338 | 2.1:+2543335 | None:intergenic |
GACCACCCTGAAGGTCCTTT+TGG | 0.374661 | 2.1:-2542402 | MS.gene36244:CDS |
TTCGTGCCAAAAGGACCTTC+AGG | 0.388454 | 2.1:+2542396 | None:intergenic |
GGACCTGGCGGTGATCCTTA+TGG | 0.392481 | 2.1:-2539350 | MS.gene36244:CDS |
CGTTCATGACCGGTAGCAAT+TGG | 0.405824 | 2.1:+2543136 | None:intergenic |
TACTATAACAGAAGGATTGT+TGG | 0.415818 | 2.1:-2540837 | MS.gene36244:CDS |
GGCGACGTGGCGGCTGAGGC+CGG | 0.418601 | 2.1:+2543282 | None:intergenic |
GATTTGGTTGTGATTGTAGC+TGG | 0.422537 | 2.1:-2543190 | MS.gene36244:CDS |
ATGAGAATGAGATGAAGTTA+GGG | 0.423625 | 2.1:+2543336 | None:intergenic |
TGCACACACTGGACATTCAT+GGG | 0.432638 | 2.1:+2540631 | None:intergenic |
GTGCACACACTGGACATTCA+TGG | 0.436671 | 2.1:+2540630 | None:intergenic |
TGTTGGATGCCCCGGTGGTG+AGG | 0.446924 | 2.1:-2540820 | MS.gene36244:CDS |
CGCCACGTCGCCACACAATC+AGG | 0.449393 | 2.1:-2543271 | MS.gene36244:CDS |
CACTTACCACCCTCACCACC+GGG | 0.453277 | 2.1:+2540810 | None:intergenic |
CTTCAGGGTGGTCTATTTCA+AGG | 0.458207 | 2.1:+2542412 | None:intergenic |
GGCGGCTGAGGCCGGCGAAT+CGG | 0.463992 | 2.1:+2543290 | None:intergenic |
ACACTTACCACCCTCACCAC+CGG | 0.473884 | 2.1:+2540809 | None:intergenic |
GTTGGATGCCCCGGTGGTGA+GGG | 0.475405 | 2.1:-2540819 | MS.gene36244:CDS |
GTGTGGCGACGTGGCGGCTG+AGG | 0.482725 | 2.1:+2543278 | None:intergenic |
TCTGATCAATGGTGTCCATA+AGG | 0.484112 | 2.1:+2539335 | None:intergenic |
TTACTAACCTTCGTGCCAAA+AGG | 0.484133 | 2.1:+2542387 | None:intergenic |
CATCCTCGATCCGCCGTCGC+CGG | 0.485063 | 2.1:-2543316 | MS.gene36244:CDS |
GGTTGTGATTGTAGCTGGTT+CGG | 0.494202 | 2.1:-2543185 | MS.gene36244:CDS |
AGGATGAGCATGATGTTGTC+TGG | 0.496376 | 2.1:-2540676 | MS.gene36244:CDS |
GGCGAATCGGAGACCGGCGA+CGG | 0.501941 | 2.1:+2543303 | None:intergenic |
CAGCTTGAAGTGGTGGGACC+TGG | 0.505788 | 2.1:-2539365 | MS.gene36244:CDS |
TGCGTTACAGCTTGAAGTGG+TGG | 0.516079 | 2.1:-2539372 | MS.gene36244:intron |
GTCGCCGGTCTCCGATTCGC+CGG | 0.516296 | 2.1:-2543301 | MS.gene36244:CDS |
TGAAAATACTGTGCACACAC+TGG | 0.523295 | 2.1:+2540620 | None:intergenic |
AGAAGGATTGTTGGATGCCC+CGG | 0.526647 | 2.1:-2540828 | MS.gene36244:CDS |
TCGTGCCAAAAGGACCTTCA+GGG | 0.538959 | 2.1:+2542397 | None:intergenic |
TTAAGTCTTACTATAACAGA+AGG | 0.543566 | 2.1:-2540845 | MS.gene36244:CDS |
GAGGCCGGCGAATCGGAGAC+CGG | 0.548914 | 2.1:+2543297 | None:intergenic |
TAGTAAGACTTAACAACGGC+AGG | 0.550387 | 2.1:+2540855 | None:intergenic |
GCGTTACAGCTTGAAGTGGT+GGG | 0.554549 | 2.1:-2539371 | MS.gene36244:intron |
AATCTCCTCACGTTCATGAC+CGG | 0.554757 | 2.1:+2543126 | None:intergenic |
GGATGCCCCGGTGGTGAGGG+TGG | 0.570608 | 2.1:-2540816 | MS.gene36244:intron |
GATGTAGTTCCAATTGCTAC+CGG | 0.573966 | 2.1:-2543145 | MS.gene36244:CDS |
GAATCGGAGACCGGCGACGG+CGG | 0.589478 | 2.1:+2543306 | None:intergenic |
AGACCGGCGACGGCGGATCG+AGG | 0.592370 | 2.1:+2543313 | None:intergenic |
TGTCCATAAGGATCACCGCC+AGG | 0.601139 | 2.1:+2539347 | None:intergenic |
TTCTGCGTTACAGCTTGAAG+TGG | 0.625576 | 2.1:-2539375 | MS.gene36244:intron |
TGCTACCGGTCATGAACGTG+AGG | 0.630864 | 2.1:-2543131 | MS.gene36244:CDS |
ATTCATCAAAATCAAGAACA+AGG | 0.636304 | 2.1:+2543216 | None:intergenic |
TTCGGTGAAGAAGACAGTTG+AGG | 0.641042 | 2.1:-2543167 | MS.gene36244:CDS |
GGAGATTCAAGCTGATCTTG+AGG | 0.651732 | 2.1:-2543110 | MS.gene36244:intron |
CTTGAAATAGACCACCCTGA+AGG | 0.658668 | 2.1:-2542411 | MS.gene36244:CDS |
GCACACACTGGACATTCATG+GGG | 0.668546 | 2.1:+2540632 | None:intergenic |
TACCTGATTGTGTGGCGACG+TGG | 0.669661 | 2.1:+2543269 | None:intergenic |
CTTGAAGTGGTGGGACCTGG+CGG | 0.684429 | 2.1:-2539362 | MS.gene36244:CDS |
AGTGAAGATACCTGATTGTG+TGG | 0.687822 | 2.1:+2543261 | None:intergenic |
CTGATTGTGTGGCGACGTGG+CGG | 0.691244 | 2.1:+2543272 | None:intergenic |
TCTCAAACACCATCATGTGG+CGG | 0.696333 | 2.1:-2543387 | None:intergenic |
AGGATTGTTGGATGCCCCGG+TGG | 0.708518 | 2.1:-2540825 | MS.gene36244:CDS |
TGCCAAAAGGACCTTCAGGG+TGG | 0.711901 | 2.1:+2542400 | None:intergenic |
GTTATAGTAAGACTTAACAA+CGG | 0.724381 | 2.1:+2540851 | None:intergenic |
ACTTACCACCCTCACCACCG+GGG | 0.751343 | 2.1:+2540811 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACACAAGTTATAAATAAAAA+TGG | + | chr2.1:2539734-2539753 | None:intergenic | 15.0% |
!! | ACATTTAAAAACTTTAGTAA+TGG | + | chr2.1:2539974-2539993 | None:intergenic | 15.0% |
!! | ATATATGATAGAACATTATA+GGG | - | chr2.1:2540846-2540865 | MS.gene36244:CDS | 15.0% |
!! | CATTTAAAAACTTTAGTAAT+GGG | + | chr2.1:2539973-2539992 | None:intergenic | 15.0% |
!! | GAAAAAGATGTAAAATAAAT+AGG | + | chr2.1:2542514-2542533 | None:intergenic | 15.0% |
!! | TAAAATAAATAGGAATATGT+TGG | + | chr2.1:2542504-2542523 | None:intergenic | 15.0% |
!! | TAGAAAAAATTACTTGAAAA+TGG | - | chr2.1:2543152-2543171 | MS.gene36244:CDS | 15.0% |
!! | TTATACTTTAATTACCTAAA+GGG | - | chr2.1:2540586-2540605 | MS.gene36244:intron | 15.0% |
!! | TTTATACTTTAATTACCTAA+AGG | - | chr2.1:2540585-2540604 | MS.gene36244:intron | 15.0% |
!!! | AAAATCACTTTTCTAAATTA+AGG | + | chr2.1:2540516-2540535 | None:intergenic | 15.0% |
!!! | ACTAAAGTTTTTAAATGTTT+TGG | - | chr2.1:2539976-2539995 | MS.gene36244:intron | 15.0% |
!!! | ATGTTTATAACTATTTTTAC+TGG | - | chr2.1:2542131-2542150 | MS.gene36244:intron | 15.0% |
!!! | ATTTAACTAGAATTTGAAAT+TGG | + | chr2.1:2543219-2543238 | None:intergenic | 15.0% |
!!! | ATTTTTGAAGAATGATAATT+TGG | + | chr2.1:2541069-2541088 | None:intergenic | 15.0% |
!!! | CTAAAGTTTTTAAATGTTTT+GGG | - | chr2.1:2539977-2539996 | MS.gene36244:intron | 15.0% |
!!! | TAAAGTTTTTAAATGTTTTG+GGG | - | chr2.1:2539978-2539997 | MS.gene36244:intron | 15.0% |
!!! | TATTTAATCTTTTTGAAGTT+TGG | - | chr2.1:2540735-2540754 | MS.gene36244:intron | 15.0% |
!!! | TGATTTTAAATTTTAATCTG+AGG | - | chr2.1:2539861-2539880 | MS.gene36244:intron | 15.0% |
!!! | TTAATTTAGAAAAGTGATTT+TGG | - | chr2.1:2540515-2540534 | MS.gene36244:intron | 15.0% |
!!! | TTGTATTTTTTGTTTGTTTA+GGG | - | chr2.1:2540269-2540288 | MS.gene36244:intron | 15.0% |
!!! | TTTGTATTTTTTGTTTGTTT+AGG | - | chr2.1:2540268-2540287 | MS.gene36244:intron | 15.0% |
!! | AAAGTTTAAAGACAGAAAAT+AGG | - | chr2.1:2541565-2541584 | MS.gene36244:intron | 20.0% |
!! | AATAGTTTCTCTTTAAACTA+AGG | + | chr2.1:2540788-2540807 | None:intergenic | 20.0% |
!! | ACAAAATGGAAAAATAAAAG+TGG | + | chr2.1:2539790-2539809 | None:intergenic | 20.0% |
!! | CTCAATTGTAAGATAAAATA+TGG | - | chr2.1:2540707-2540726 | MS.gene36244:intron | 20.0% |
!! | GATATATGATAGAACATTAT+AGG | - | chr2.1:2540845-2540864 | MS.gene36244:CDS | 20.0% |
!! | TATTTCCAAAACTATAGTAA+TGG | - | chr2.1:2540040-2540059 | MS.gene36244:intron | 20.0% |
!! | TTCATTATTTCAATTGCAAA+TGG | - | chr2.1:2540662-2540681 | MS.gene36244:CDS | 20.0% |
!!! | AATGGTTTTGGTTTATTTTT+TGG | - | chr2.1:2540487-2540506 | MS.gene36244:intron | 20.0% |
!!! | CATATTATATAGGTTACTTT+TGG | - | chr2.1:2540225-2540244 | MS.gene36244:intron | 20.0% |
!!! | GATTTTGATGAATTTTGATT+TGG | - | chr2.1:2539507-2539526 | MS.gene36244:intron | 20.0% |
!!! | TATTTTCTGTCTTTAAACTT+TGG | + | chr2.1:2541566-2541585 | None:intergenic | 20.0% |
!!! | TGTGTTGTTAAAAATCATTA+TGG | - | chr2.1:2540559-2540578 | MS.gene36244:intron | 20.0% |
!!! | TTTAAATTCTGCACAAATTT+TGG | + | chr2.1:2542932-2542951 | None:intergenic | 20.0% |
!!! | TTTAGTAATGGGATAATAAA+TGG | + | chr2.1:2539962-2539981 | None:intergenic | 20.0% |
!!! | TTTGAAATAGCAACTATATT+GGG | + | chr2.1:2540104-2540123 | None:intergenic | 20.0% |
!!! | TTTTATCTTACAATTGAGTA+TGG | + | chr2.1:2540705-2540724 | None:intergenic | 20.0% |
!!! | TTTTGAAATAGCAACTATAT+TGG | + | chr2.1:2540105-2540124 | None:intergenic | 20.0% |
! | AAAGACAATGAGAATTAGAT+TGG | - | chr2.1:2541003-2541022 | MS.gene36244:intron | 25.0% |
! | AAAGTAACTCTTTCTCATAT+GGG | - | chr2.1:2542567-2542586 | MS.gene36244:intron | 25.0% |
! | AAGGATCTTATAATTAGGAA+TGG | + | chr2.1:2542412-2542431 | None:intergenic | 25.0% |
! | ACAATATGAAGAATGAAACA+GGG | + | chr2.1:2540619-2540638 | None:intergenic | 25.0% |
! | ACATATAACTCAATTGATCT+TGG | + | chr2.1:2542160-2542179 | None:intergenic | 25.0% |
! | ACATTGTACTAAATAGCATA+TGG | - | chr2.1:2540126-2540145 | MS.gene36244:intron | 25.0% |
! | ATATCAGAATAAGAGTAGTT+CGG | + | chr2.1:2539833-2539852 | None:intergenic | 25.0% |
! | ATTACGGGAATTAAGAAAAT+TGG | + | chr2.1:2542641-2542660 | None:intergenic | 25.0% |
! | ATTCATCAAAATCAAGAACA+AGG | + | chr2.1:2539500-2539519 | None:intergenic | 25.0% |
! | CAAGTCATTCAAATTATTCA+AGG | + | chr2.1:2542307-2542326 | None:intergenic | 25.0% |
! | GAAAATGGAATAAGAATAGT+TGG | - | chr2.1:2543167-2543186 | MS.gene36244:CDS | 25.0% |
! | GACAAGACTTCATATTATAT+AGG | - | chr2.1:2540215-2540234 | MS.gene36244:intron | 25.0% |
! | GGACTAATAAAATTGTCAAA+AGG | + | chr2.1:2542431-2542450 | None:intergenic | 25.0% |
! | GTCAAAAGGATCTTATAATT+AGG | + | chr2.1:2542417-2542436 | None:intergenic | 25.0% |
! | GTTATAGTAAGACTTAACAA+CGG | + | chr2.1:2541865-2541884 | None:intergenic | 25.0% |
! | TAAAGTAACTCTTTCTCATA+TGG | - | chr2.1:2542566-2542585 | MS.gene36244:intron | 25.0% |
! | TGCTTAAAGATGTATTATGA+AGG | - | chr2.1:2541716-2541735 | MS.gene36244:intron | 25.0% |
! | TGTTTGATATAAAGAAACCA+CGG | - | chr2.1:2543014-2543033 | MS.gene36244:intron | 25.0% |
! | TTAAGTCTTACTATAACAGA+AGG | - | chr2.1:2541868-2541887 | MS.gene36244:intron | 25.0% |
! | TTATCTGACAATTGATTGTT+TGG | - | chr2.1:2542344-2542363 | MS.gene36244:intron | 25.0% |
! | TTGAAATAGCAACTATATTG+GGG | + | chr2.1:2540103-2540122 | None:intergenic | 25.0% |
! | TTGAAGTTTCCAAAGTTTAA+AGG | - | chr2.1:2541554-2541573 | MS.gene36244:intron | 25.0% |
! | TTTGAAGAATGATAATTTGG+AGG | + | chr2.1:2541066-2541085 | None:intergenic | 25.0% |
! | TTTGGAGGTAAAAAAATGTT+TGG | + | chr2.1:2541051-2541070 | None:intergenic | 25.0% |
!! | AGTTAGAGAAATGAATGTTT+TGG | - | chr2.1:2542848-2542867 | MS.gene36244:intron | 25.0% |
!! | ATATAGGTATTGTAGATTGA+TGG | + | chr2.1:2541245-2541264 | None:intergenic | 25.0% |
!! | CACATTTTTCCTTTAAACTT+TGG | + | chr2.1:2541698-2541717 | None:intergenic | 25.0% |
!! | TAAAGATGTTTTATGAAGGT+TGG | - | chr2.1:2541590-2541609 | MS.gene36244:intron | 25.0% |
!! | TTTTCTTAATTCCCGTAATT+TGG | - | chr2.1:2542642-2542661 | MS.gene36244:intron | 25.0% |
!!! | AACTTGTTTTTTTAATGCAG+AGG | - | chr2.1:2542017-2542036 | MS.gene36244:intron | 25.0% |
!!! | ATTTTTTGTTTGTTTAGGGA+AGG | - | chr2.1:2540273-2540292 | MS.gene36244:intron | 25.0% |
!!! | CTTGTAAGATTTTTCAATCA+TGG | - | chr2.1:2539900-2539919 | MS.gene36244:intron | 25.0% |
!!! | GTGGTGCTAATTAATTTTTT+TGG | - | chr2.1:2543315-2543334 | MS.gene36244:CDS | 25.0% |
!!! | TAACTCGTCAATTATTTTAG+AGG | + | chr2.1:2542833-2542852 | None:intergenic | 25.0% |
!!! | TGTCAAAACACAGATTTTTT+AGG | + | chr2.1:2542273-2542292 | None:intergenic | 25.0% |
AAATTGCAAAGACATGTAGA+AGG | - | chr2.1:2541187-2541206 | MS.gene36244:intron | 30.0% | |
ACAAAACATAAGCTCAGATA+TGG | + | chr2.1:2542997-2543016 | None:intergenic | 30.0% | |
ACAATTATATATGCAAGCTG+AGG | - | chr2.1:2540366-2540385 | MS.gene36244:intron | 30.0% | |
ACCAAAGAGATCTTATGAAA+AGG | + | chr2.1:2542453-2542472 | None:intergenic | 30.0% | |
ATACAGATGACCATTTCAAA+TGG | - | chr2.1:2543237-2543256 | MS.gene36244:CDS | 30.0% | |
ATATATGTCACTGTCATAGA+GGG | + | chr2.1:2542734-2542753 | None:intergenic | 30.0% | |
ATGAGAATGAGATGAAGTTA+GGG | + | chr2.1:2539380-2539399 | None:intergenic | 30.0% | |
ATTTAAAGAATATGGACGAG+AGG | + | chr2.1:2543104-2543123 | None:intergenic | 30.0% | |
CCAAAGAGATCTTATGAAAA+GGG | + | chr2.1:2542452-2542471 | None:intergenic | 30.0% | |
GAAATGTAGGCAATAGAAAA+TGG | - | chr2.1:2540065-2540084 | MS.gene36244:intron | 30.0% | |
GACAATATGAAGAATGAAAC+AGG | + | chr2.1:2540620-2540639 | None:intergenic | 30.0% | |
GATCTTATAATTAGGAATGG+AGG | + | chr2.1:2542409-2542428 | None:intergenic | 30.0% | |
GCTTCTGTATCGAATTATAT+AGG | + | chr2.1:2541261-2541280 | None:intergenic | 30.0% | |
TACAGATGACCATTTCAAAT+GGG | - | chr2.1:2543238-2543257 | MS.gene36244:CDS | 30.0% | |
TACTATAACAGAAGGATTGT+TGG | - | chr2.1:2541876-2541895 | MS.gene36244:intron | 30.0% | |
TATATATGTCACTGTCATAG+AGG | + | chr2.1:2542735-2542754 | None:intergenic | 30.0% | |
TGAGGATATTGGTAAATTGT+TGG | - | chr2.1:2541404-2541423 | MS.gene36244:intron | 30.0% | |
TGCTTACATTGGATATTCTT+TGG | - | chr2.1:2541372-2541391 | MS.gene36244:intron | 30.0% | |
TGGTGATAAGTACTAGAATT+TGG | - | chr2.1:2541972-2541991 | MS.gene36244:intron | 30.0% | |
TTCCAAAACTATAGTAATGG+AGG | - | chr2.1:2540043-2540062 | MS.gene36244:intron | 30.0% | |
TTGGCAAAACTAATGTTGTT+TGG | - | chr2.1:2540534-2540553 | MS.gene36244:intron | 30.0% | |
TTGGGGTGAATAAAAAGATT+TGG | - | chr2.1:2539995-2540014 | MS.gene36244:intron | 30.0% | |
TTGTACTAAATAGCATATGG+TGG | - | chr2.1:2540129-2540148 | MS.gene36244:intron | 30.0% | |
! | CAGTGCTTCTGTTAATTTTA+TGG | + | chr2.1:2541134-2541153 | None:intergenic | 30.0% |
! | TATAGTAATGGAGGAAATGT+AGG | - | chr2.1:2540052-2540071 | MS.gene36244:intron | 30.0% |
! | TTCCTCCATTACTATAGTTT+TGG | + | chr2.1:2540048-2540067 | None:intergenic | 30.0% |
!! | CTGCACTGATTTAAAGAATA+TGG | + | chr2.1:2543112-2543131 | None:intergenic | 30.0% |
!! | GATTTTTCAATCATGGATAG+CGG | - | chr2.1:2539907-2539926 | MS.gene36244:intron | 30.0% |
!!! | TTTTGCATTACAGCTTTAAG+TGG | - | chr2.1:2543296-2543315 | MS.gene36244:CDS | 30.0% |
AAGACATGTATTAGACAACG+TGG | + | chr2.1:2541792-2541811 | None:intergenic | 35.0% | |
ACAGATTCGTAAAGAAAGAC+AGG | + | chr2.1:2541932-2541951 | None:intergenic | 35.0% | |
ATAAGAGTAGTTCGGATTCA+AGG | + | chr2.1:2539825-2539844 | None:intergenic | 35.0% | |
ATAGCAACTATATTGGGGTT+AGG | + | chr2.1:2540098-2540117 | None:intergenic | 35.0% | |
ATGCATAAAATTCCTCCATG+GGG | - | chr2.1:2543064-2543083 | MS.gene36244:intron | 35.0% | |
ATTATTGCCCTCAACTTTCA+CGG | - | chr2.1:2542226-2542245 | MS.gene36244:intron | 35.0% | |
CAACTAATTCACACACACAT+AGG | + | chr2.1:2540436-2540455 | None:intergenic | 35.0% | |
CAATCAACTCCTTAATCTCT+GGG | + | chr2.1:2540819-2540838 | None:intergenic | 35.0% | |
CATGCATAAAATTCCTCCAT+GGG | - | chr2.1:2543063-2543082 | MS.gene36244:intron | 35.0% | |
CTTATCACCAGATTGTGAAA+AGG | + | chr2.1:2541962-2541981 | None:intergenic | 35.0% | |
GATCTTATAATACCATCCCT+AGG | + | chr2.1:2540982-2541001 | None:intergenic | 35.0% | |
GATGAGAATGAGATGAAGTT+AGG | + | chr2.1:2539381-2539400 | None:intergenic | 35.0% | |
GGCATAGGAAATTGACAAAA+TGG | + | chr2.1:2539804-2539823 | None:intergenic | 35.0% | |
GTATACATTAAACAGCGACA+AGG | + | chr2.1:2542384-2542403 | None:intergenic | 35.0% | |
TAAGAAAGACCCAGAGATTA+AGG | - | chr2.1:2540807-2540826 | MS.gene36244:intron | 35.0% | |
TCAATCAACTCCTTAATCTC+TGG | + | chr2.1:2540820-2540839 | None:intergenic | 35.0% | |
! | AGTAAAGCACCCATTTGAAA+TGG | + | chr2.1:2543250-2543269 | None:intergenic | 35.0% |
! | ATTCTTTGGAAGTAAGCATG+AGG | - | chr2.1:2541386-2541405 | MS.gene36244:intron | 35.0% |
! | CCCTTTTCATAAGATCTCTT+TGG | - | chr2.1:2542449-2542468 | MS.gene36244:intron | 35.0% |
! | GGCGTAAAGATGTTTTATGA+AGG | - | chr2.1:2541586-2541605 | MS.gene36244:intron | 35.0% |
! | GTGTGAATTAGTTGTTTCCA+AGG | - | chr2.1:2540442-2540461 | MS.gene36244:intron | 35.0% |
!! | TCCAAGGTTGATTTTGATGT+GGG | - | chr2.1:2540458-2540477 | MS.gene36244:intron | 35.0% |
!! | TTCCAAGGTTGATTTTGATG+TGG | - | chr2.1:2540457-2540476 | MS.gene36244:intron | 35.0% |
!!! | GAAATGAATGTTTTGGCACT+AGG | - | chr2.1:2542855-2542874 | MS.gene36244:intron | 35.0% |
!!! | TCTGCACAAATTTTGGCTAA+AGG | + | chr2.1:2542925-2542944 | None:intergenic | 35.0% |
AACCATGGCTGGAAAATCAA+GGG | - | chr2.1:2541621-2541640 | MS.gene36244:intron | 40.0% | |
ACCCACATCAAAATCAACCT+TGG | + | chr2.1:2540462-2540481 | None:intergenic | 40.0% | |
AGTATCCTAACTCGCTATAG+TGG | + | chr2.1:2539937-2539956 | None:intergenic | 40.0% | |
AGTGAAGATACCTGATTGTG+TGG | + | chr2.1:2539455-2539474 | None:intergenic | 40.0% | |
ATGAAGTCCGTGAAAGTTGA+GGG | + | chr2.1:2542236-2542255 | None:intergenic | 40.0% | |
ATTCCCGTAATTTGGCCAAA+AGG | - | chr2.1:2542650-2542669 | MS.gene36244:intron | 40.0% | |
CTATAAGCGCTATACCTCTA+TGG | + | chr2.1:2540186-2540205 | None:intergenic | 40.0% | |
CTCAATTACTTCACCGTACT+CGG | - | chr2.1:2541448-2541467 | MS.gene36244:intron | 40.0% | |
GAAAACCACTATAGCGAGTT+AGG | - | chr2.1:2539929-2539948 | MS.gene36244:intron | 40.0% | |
GATGTAGTTCCAATTGCTAC+CGG | - | chr2.1:2539568-2539587 | MS.gene36244:intron | 40.0% | |
GCATGCATAAAATTCCTCCA+TGG | - | chr2.1:2543062-2543081 | MS.gene36244:intron | 40.0% | |
GCTATATATATTCCCCATGG+AGG | + | chr2.1:2543079-2543098 | None:intergenic | 40.0% | |
GGAAGTAAGCATGAGGATAT+TGG | - | chr2.1:2541393-2541412 | MS.gene36244:intron | 40.0% | |
GGATGCTAAGTTGCTTACAT+TGG | - | chr2.1:2541361-2541380 | MS.gene36244:intron | 40.0% | |
GTAGGCAATAGAAAATGGAG+AGG | - | chr2.1:2540070-2540089 | MS.gene36244:intron | 40.0% | |
GTGGCTATATATATTCCCCA+TGG | + | chr2.1:2543082-2543101 | None:intergenic | 40.0% | |
GTTATAACTCAGTGAAGGGT+AGG | + | chr2.1:2540949-2540968 | None:intergenic | 40.0% | |
TAAAGAATATGGACGAGAGG+TGG | + | chr2.1:2543101-2543120 | None:intergenic | 40.0% | |
TAACCATGGCTGGAAAATCA+AGG | - | chr2.1:2541620-2541639 | MS.gene36244:intron | 40.0% | |
TAGTAAGACTTAACAACGGC+AGG | + | chr2.1:2541861-2541880 | None:intergenic | 40.0% | |
TATAACACCCAAGTCTCCTA+GGG | - | chr2.1:2540963-2540982 | MS.gene36244:intron | 40.0% | |
TATGAAGTCCGTGAAAGTTG+AGG | + | chr2.1:2542237-2542256 | None:intergenic | 40.0% | |
TCAACTTTCACGGACTTCAT+AGG | - | chr2.1:2542236-2542255 | MS.gene36244:intron | 40.0% | |
TCGATACAGAAGCAATCTTC+TGG | - | chr2.1:2541268-2541287 | MS.gene36244:intron | 40.0% | |
TGAAAATACTGTGCACACAC+TGG | + | chr2.1:2542096-2542115 | None:intergenic | 40.0% | |
TGTCTGCTTTCGCTGTTTAT+AGG | - | chr2.1:2541830-2541849 | MS.gene36244:intron | 40.0% | |
TTACTAACCTTCGTGCCAAA+AGG | + | chr2.1:2540329-2540348 | None:intergenic | 40.0% | |
TTATAACACCCAAGTCTCCT+AGG | - | chr2.1:2540962-2540981 | MS.gene36244:intron | 40.0% | |
TTCCCGTAATTTGGCCAAAA+GGG | - | chr2.1:2542651-2542670 | MS.gene36244:intron | 40.0% | |
! | AGCATATGGTGGAACAATAG+TGG | - | chr2.1:2540140-2540159 | MS.gene36244:intron | 40.0% |
! | AGTGTGTGCACAGTATTTTC+AGG | - | chr2.1:2542095-2542114 | MS.gene36244:intron | 40.0% |
! | GAGATGAAGTTAGGGTTTTG+AGG | + | chr2.1:2539372-2539391 | None:intergenic | 40.0% |
! | GATTTGGTTGTGATTGTAGC+TGG | - | chr2.1:2539523-2539542 | MS.gene36244:intron | 40.0% |
! | GGCTTGGTTGTTGTTGTATA+CGG | - | chr2.1:2540908-2540927 | MS.gene36244:intron | 40.0% |
! | GGGTGTTATAACTCAGTGAA+GGG | + | chr2.1:2540953-2540972 | None:intergenic | 40.0% |
! | GTGCAAACCTTTTCACAATC+TGG | - | chr2.1:2541952-2541971 | MS.gene36244:intron | 40.0% |
! | GTGGAACAATAGTGGTTTGT+TGG | - | chr2.1:2540148-2540167 | MS.gene36244:intron | 40.0% |
! | TGGGTGTTATAACTCAGTGA+AGG | + | chr2.1:2540954-2540973 | None:intergenic | 40.0% |
!! | AGCATGATGTTGTCTGGTTT+TGG | - | chr2.1:2542043-2542062 | MS.gene36244:intron | 40.0% |
!! | GAGGATAGCAACTTGTTAAC+AGG | + | chr2.1:2541431-2541450 | None:intergenic | 40.0% |
!! | GTTGATTTTGATGTGGGTTG+CGG | - | chr2.1:2540464-2540483 | MS.gene36244:intron | 40.0% |
AACAGGGACTCATACCCTTT+AGG | + | chr2.1:2540603-2540622 | None:intergenic | 45.0% | |
AACCGTGGCTGGAAAATCAA+GGG | - | chr2.1:2541489-2541508 | MS.gene36244:intron | 45.0% | |
AAGGGTAGGTAGGAAGACTA+GGG | + | chr2.1:2540935-2540954 | None:intergenic | 45.0% | |
AATACCATCCCTAGGAGACT+TGG | + | chr2.1:2540974-2540993 | None:intergenic | 45.0% | |
AATCTCCTCACGTTCATGAC+CGG | + | chr2.1:2539590-2539609 | None:intergenic | 45.0% | |
ACCATGGCTGGAAAATCAAG+GGG | - | chr2.1:2541622-2541641 | MS.gene36244:intron | 45.0% | |
AGGATGAGCATGATGTTGTC+TGG | - | chr2.1:2542037-2542056 | MS.gene36244:intron | 45.0% | |
ATACCATCCCTAGGAGACTT+GGG | + | chr2.1:2540973-2540992 | None:intergenic | 45.0% | |
CCAAAAGGGTCCTATAGTTG+GGG | - | chr2.1:2542665-2542684 | MS.gene36244:intron | 45.0% | |
CGAGTACGGTGAAGTAATTG+AGG | + | chr2.1:2541450-2541469 | None:intergenic | 45.0% | |
CTACATCGATCCCCAACTAT+AGG | + | chr2.1:2542678-2542697 | None:intergenic | 45.0% | |
CTTCAGGGTGGTCTATTTCA+AGG | + | chr2.1:2540304-2540323 | None:intergenic | 45.0% | |
CTTGAAATAGACCACCCTGA+AGG | - | chr2.1:2540302-2540321 | MS.gene36244:intron | 45.0% | |
GCATTCATGAGTGATGACAC+TGG | + | chr2.1:2542968-2542987 | None:intergenic | 45.0% | |
GCCAAAAGGGTCCTATAGTT+GGG | - | chr2.1:2542664-2542683 | MS.gene36244:intron | 45.0% | |
GGAATTCTGCTACACCATAG+AGG | - | chr2.1:2540169-2540188 | MS.gene36244:intron | 45.0% | |
GGAGATTCAAGCTGATCTTG+AGG | - | chr2.1:2539603-2539622 | MS.gene36244:intron | 45.0% | |
GGTTGTGATTGTAGCTGGTT+CGG | - | chr2.1:2539528-2539547 | MS.gene36244:intron | 45.0% | |
GTAGTTCGGATTCAAGGCAT+AGG | + | chr2.1:2539819-2539838 | None:intergenic | 45.0% | |
TAACCGTGGCTGGAAAATCA+AGG | - | chr2.1:2541488-2541507 | MS.gene36244:intron | 45.0% | |
TAACTCAGTGAAGGGTAGGT+AGG | + | chr2.1:2540945-2540964 | None:intergenic | 45.0% | |
TAAGAGGTGAAGAGTAACCG+TGG | - | chr2.1:2541474-2541493 | MS.gene36244:intron | 45.0% | |
TCACCTCTTACAACCGAGTA+CGG | + | chr2.1:2541464-2541483 | None:intergenic | 45.0% | |
TGCAAAGACATGTAGAAGGC+TGG | - | chr2.1:2541191-2541210 | MS.gene36244:intron | 45.0% | |
TGCACACACTGGACATTCAT+GGG | + | chr2.1:2542085-2542104 | None:intergenic | 45.0% | |
TTCGGTGAAGAAGACAGTTG+AGG | - | chr2.1:2539546-2539565 | MS.gene36244:intron | 45.0% | |
! | AAGCCTTATCCCACTAAGCA+GGG | + | chr2.1:2540893-2540912 | None:intergenic | 45.0% |
! | GACCCTTTTGGCCAAATTAC+GGG | + | chr2.1:2542656-2542675 | None:intergenic | 45.0% |
! | GGACCCTTTTGGCCAAATTA+CGG | + | chr2.1:2542657-2542676 | None:intergenic | 45.0% |
! | GGTTGGCTACATGGATCAAA+CGG | + | chr2.1:2540872-2540891 | None:intergenic | 45.0% |
!! | AGGTTGGTGAAGAGTAACCA+TGG | - | chr2.1:2541606-2541625 | MS.gene36244:intron | 45.0% |
!! | TTTTGATGTGGGTTGCGGAA+TGG | - | chr2.1:2540469-2540488 | MS.gene36244:intron | 45.0% |
!!! | GAAGTTAGGGTTTTGAGGTG+AGG | + | chr2.1:2539367-2539386 | None:intergenic | 45.0% |
!!! | TGATGTTGTCTGGTTTTGGC+TGG | - | chr2.1:2542047-2542066 | MS.gene36244:intron | 45.0% |
!! | TGTATTAAATATATTAAATT+TGG | - | chr2.1:2541340-2541359 | MS.gene36244:intron | 5.0% |
ACCGTGGCTGGAAAATCAAG+GGG | - | chr2.1:2541490-2541509 | MS.gene36244:intron | 50.0% | |
AGAAGGATTGTTGGATGCCC+CGG | - | chr2.1:2541885-2541904 | MS.gene36244:intron | 50.0% | |
ATGTAGCCAACCCTGCTTAG+TGG | - | chr2.1:2540880-2540899 | MS.gene36244:intron | 50.0% | |
CAACCCTGCTTAGTGGGATA+AGG | - | chr2.1:2540887-2540906 | MS.gene36244:intron | 50.0% | |
CGTTCATGACCGGTAGCAAT+TGG | + | chr2.1:2539580-2539599 | None:intergenic | 50.0% | |
CTGCTTAGTGGGATAAGGCT+TGG | - | chr2.1:2540892-2540911 | MS.gene36244:intron | 50.0% | |
CTTATCCCACTAAGCAGGGT+TGG | + | chr2.1:2540889-2540908 | None:intergenic | 50.0% | |
GAAGGGTAGGTAGGAAGACT+AGG | + | chr2.1:2540936-2540955 | None:intergenic | 50.0% | |
GCACACACTGGACATTCATG+GGG | + | chr2.1:2542084-2542103 | None:intergenic | 50.0% | |
GCGTTACAGCTTGAAGTGGT+GGG | - | chr2.1:2543342-2543361 | MS.gene36244:CDS | 50.0% | |
GGCCAAAAGGGTCCTATAGT+TGG | - | chr2.1:2542663-2542682 | MS.gene36244:intron | 50.0% | |
GTGCACACACTGGACATTCA+TGG | + | chr2.1:2542086-2542105 | None:intergenic | 50.0% | |
TCACCGTACTCGGTTGTAAG+AGG | - | chr2.1:2541458-2541477 | MS.gene36244:intron | 50.0% | |
TCGTGCCAAAAGGACCTTCA+GGG | + | chr2.1:2540319-2540338 | None:intergenic | 50.0% | |
TGCGTTACAGCTTGAAGTGG+TGG | - | chr2.1:2543341-2543360 | MS.gene36244:CDS | 50.0% | |
TGGTGAAGAGTAACCATGGC+TGG | - | chr2.1:2541610-2541629 | MS.gene36244:intron | 50.0% | |
TGTAGCCAACCCTGCTTAGT+GGG | - | chr2.1:2540881-2540900 | MS.gene36244:intron | 50.0% | |
TGTCAGCATACACTACACCG+TGG | + | chr2.1:2543034-2543053 | None:intergenic | 50.0% | |
TTCGTGCCAAAAGGACCTTC+AGG | + | chr2.1:2540320-2540339 | None:intergenic | 50.0% | |
! | ACCCCTTGATTTTCCAGCCA+CGG | + | chr2.1:2541494-2541513 | None:intergenic | 50.0% |
! | ACCCCTTGATTTTCCAGCCA+TGG | + | chr2.1:2541494-2541513 | None:intergenic | 50.0% |
! | CAAGCCTTATCCCACTAAGC+AGG | + | chr2.1:2540894-2540913 | None:intergenic | 50.0% |
! | CCCCAACTATAGGACCCTTT+TGG | + | chr2.1:2542668-2542687 | None:intergenic | 50.0% |
! | TGAAGGTCCTTTTGGCACGA+AGG | - | chr2.1:2540319-2540338 | MS.gene36244:intron | 50.0% |
!! | ACTAAGCAGGGTTGGCTACA+TGG | + | chr2.1:2540881-2540900 | None:intergenic | 50.0% |
!! | TGTGGGTTGCGGAATGGTTT+TGG | - | chr2.1:2540475-2540494 | MS.gene36244:intron | 50.0% |
!!! | TGTTGTCTGGTTTTGGCTGG+AGG | - | chr2.1:2542050-2542069 | MS.gene36244:intron | 50.0% |
ACACCCAAGTCTCCTAGGGA+TGG | - | chr2.1:2540967-2540986 | MS.gene36244:intron | 55.0% | |
ACACTTACCACCCTCACCAC+CGG | + | chr2.1:2541907-2541926 | None:intergenic | 55.0% | |
AGGTGAAGAGTAACCGTGGC+TGG | - | chr2.1:2541478-2541497 | MS.gene36244:intron | 55.0% | |
TACCTGATTGTGTGGCGACG+TGG | + | chr2.1:2539447-2539466 | None:intergenic | 55.0% | |
TGCCAAAAGGACCTTCAGGG+TGG | + | chr2.1:2540316-2540335 | None:intergenic | 55.0% | |
TGCTACCGGTCATGAACGTG+AGG | - | chr2.1:2539582-2539601 | MS.gene36244:intron | 55.0% | |
TGTCCATAAGGATCACCGCC+AGG | + | chr2.1:2543369-2543388 | None:intergenic | 55.0% | |
! | GACCACCCTGAAGGTCCTTT+TGG | - | chr2.1:2540311-2540330 | MS.gene36244:intron | 55.0% |
!!! | GTCTGGTTTTGGCTGGAGGA+AGG | - | chr2.1:2542054-2542073 | MS.gene36244:intron | 55.0% |
ACTTACCACCCTCACCACCG+GGG | + | chr2.1:2541905-2541924 | None:intergenic | 60.0% | |
AGGATTGTTGGATGCCCCGG+TGG | - | chr2.1:2541888-2541907 | MS.gene36244:intron | 60.0% | |
CACTTACCACCCTCACCACC+GGG | + | chr2.1:2541906-2541925 | None:intergenic | 60.0% | |
CTGATTGTGTGGCGACGTGG+CGG | + | chr2.1:2539444-2539463 | None:intergenic | 60.0% | |
GGACCTGGCGGTGATCCTTA+TGG | - | chr2.1:2543363-2543382 | MS.gene36244:CDS | 60.0% | |
! | CAGCTTGAAGTGGTGGGACC+TGG | - | chr2.1:2543348-2543367 | MS.gene36244:CDS | 60.0% |
! | CTTGAAGTGGTGGGACCTGG+CGG | - | chr2.1:2543351-2543370 | MS.gene36244:CDS | 60.0% |
CGCCACGTCGCCACACAATC+AGG | - | chr2.1:2539442-2539461 | MS.gene36244:intron | 65.0% | |
GTTGGATGCCCCGGTGGTGA+GGG | - | chr2.1:2541894-2541913 | MS.gene36244:intron | 65.0% | |
TGTTGGATGCCCCGGTGGTG+AGG | - | chr2.1:2541893-2541912 | MS.gene36244:intron | 65.0% | |
CATCCTCGATCCGCCGTCGC+CGG | - | chr2.1:2539397-2539416 | MS.gene36244:intron | 70.0% | |
GAATCGGAGACCGGCGACGG+CGG | + | chr2.1:2539410-2539429 | None:intergenic | 70.0% | |
GAGGCCGGCGAATCGGAGAC+CGG | + | chr2.1:2539419-2539438 | None:intergenic | 70.0% | |
GGCGAATCGGAGACCGGCGA+CGG | + | chr2.1:2539413-2539432 | None:intergenic | 70.0% | |
! | GTCGCCGGTCTCCGATTCGC+CGG | - | chr2.1:2539412-2539431 | MS.gene36244:intron | 70.0% |
AGACCGGCGACGGCGGATCG+AGG | + | chr2.1:2539403-2539422 | None:intergenic | 75.0% | |
GGATGCCCCGGTGGTGAGGG+TGG | - | chr2.1:2541897-2541916 | MS.gene36244:intron | 75.0% | |
GGCGGCTGAGGCCGGCGAAT+CGG | + | chr2.1:2539426-2539445 | None:intergenic | 75.0% | |
GTGTGGCGACGTGGCGGCTG+AGG | + | chr2.1:2539438-2539457 | None:intergenic | 75.0% | |
! | GGCGACGTGGCGGCTGAGGC+CGG | + | chr2.1:2539434-2539453 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 2539340 | 2543395 | 2539340 | ID=MS.gene36244 |
chr2.1 | mRNA | 2539340 | 2543395 | 2539340 | ID=MS.gene36244.t1;Parent=MS.gene36244 |
chr2.1 | exon | 2543111 | 2543395 | 2543111 | ID=MS.gene36244.t1.exon1;Parent=MS.gene36244.t1 |
chr2.1 | CDS | 2543111 | 2543395 | 2543111 | ID=cds.MS.gene36244.t1;Parent=MS.gene36244.t1 |
chr2.1 | exon | 2542395 | 2542445 | 2542395 | ID=MS.gene36244.t1.exon2;Parent=MS.gene36244.t1 |
chr2.1 | CDS | 2542395 | 2542445 | 2542395 | ID=cds.MS.gene36244.t1;Parent=MS.gene36244.t1 |
chr2.1 | exon | 2540817 | 2540883 | 2540817 | ID=MS.gene36244.t1.exon3;Parent=MS.gene36244.t1 |
chr2.1 | CDS | 2540817 | 2540883 | 2540817 | ID=cds.MS.gene36244.t1;Parent=MS.gene36244.t1 |
chr2.1 | exon | 2540619 | 2540698 | 2540619 | ID=MS.gene36244.t1.exon4;Parent=MS.gene36244.t1 |
chr2.1 | CDS | 2540619 | 2540698 | 2540619 | ID=cds.MS.gene36244.t1;Parent=MS.gene36244.t1 |
chr2.1 | exon | 2539340 | 2539384 | 2539340 | ID=MS.gene36244.t1.exon5;Parent=MS.gene36244.t1 |
chr2.1 | CDS | 2539340 | 2539384 | 2539340 | ID=cds.MS.gene36244.t1;Parent=MS.gene36244.t1 |
Gene Sequence |
Protein sequence |