Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36751.t1 | AET01507.1 | 94.3 | 336 | 18 | 1 | 1 | 336 | 1 | 335 | 9.10E-181 | 642.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36751.t1 | Q9SRM3 | 24.3 | 300 | 210 | 7 | 60 | 359 | 96 | 378 | 2.2e-10 | 68.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36751.t1 | G7LGM7 | 94.3 | 336 | 18 | 1 | 1 | 336 | 1 | 335 | 6.6e-181 | 642.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene36751 | 0.837387 | 5.36E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36751.t1 | MTR_8g014330 | 93.787 | 338 | 20 | 1 | 1 | 338 | 1 | 337 | 0.0 | 654 |
| MS.gene36751.t1 | MTR_7g068650 | 24.231 | 260 | 182 | 5 | 73 | 332 | 71 | 315 | 2.38e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36751.t1 | AT1G79760 | 34.234 | 333 | 139 | 12 | 1 | 329 | 1 | 257 | 5.22e-47 | 162 |
| MS.gene36751.t1 | AT1G79760 | 34.234 | 333 | 139 | 12 | 1 | 329 | 21 | 277 | 1.20e-46 | 162 |
| MS.gene36751.t1 | AT2G38500 | 27.000 | 300 | 182 | 9 | 19 | 314 | 28 | 294 | 8.25e-18 | 84.0 |
| MS.gene36751.t1 | AT5G05600 | 23.913 | 276 | 191 | 7 | 60 | 332 | 63 | 322 | 7.35e-13 | 69.7 |
Find 95 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTTCTCACGGAGTTTC+TGG | 0.051231 | 8.2:+78733681 | MS.gene36751:CDS |
| TTTCGTCATTGCTCTGTTTC+GGG | 0.228612 | 8.2:-78733750 | None:intergenic |
| GAAGGTGGCTGAGAAAATTT+TGG | 0.236901 | 8.2:+78735750 | MS.gene36751:CDS |
| AGTTGAAATTGGAGGGAATT+TGG | 0.246627 | 8.2:+78734085 | MS.gene36751:CDS |
| ATTGGAAAGGCAATATTTAA+AGG | 0.263472 | 8.2:+78736351 | MS.gene36751:CDS |
| CGGAAATCAACGGTGGTTTC+CGG | 0.284712 | 8.2:-78733604 | None:intergenic |
| AGTTGAATGAAGAATTTATT+TGG | 0.285478 | 8.2:+78734040 | MS.gene36751:CDS |
| ATTACTAGGGCACCTTGTTC+AGG | 0.285696 | 8.2:-78736036 | None:intergenic |
| GTTTCGTCATTGCTCTGTTT+CGG | 0.288438 | 8.2:-78733751 | None:intergenic |
| ATATTTGTTTGAAAGTTTCT+TGG | 0.288538 | 8.2:-78736424 | None:intergenic |
| TGAAGAGTTGAAGTTGAAAT+TGG | 0.298562 | 8.2:+78734074 | MS.gene36751:CDS |
| AAGAAACTTTCAAACAAATA+TGG | 0.302359 | 8.2:+78736426 | MS.gene36751:CDS |
| AATTCGAAATACCTAAAATT+AGG | 0.305210 | 8.2:-78734120 | None:intergenic |
| GGGCATTACAAGGATGTAAT+TGG | 0.306906 | 8.2:+78736333 | MS.gene36751:CDS |
| GATCTCCAGCAGTGATTACT+AGG | 0.312300 | 8.2:-78736050 | None:intergenic |
| AGCATCATCAAGATATTAAT+AGG | 0.354575 | 8.2:+78735866 | MS.gene36751:CDS |
| ATGTGATTAGAATGCTGATT+AGG | 0.357036 | 8.2:+78735920 | MS.gene36751:CDS |
| GCAAGTGATGGTGATATAAT+TGG | 0.358719 | 8.2:+78735805 | MS.gene36751:CDS |
| GCTTGTTGGCCAAGTGAAAT+AGG | 0.379497 | 8.2:-78736454 | None:intergenic |
| TGTGATTAGAATGCTGATTA+GGG | 0.384993 | 8.2:+78735921 | MS.gene36751:CDS |
| GGATCTCATTGACGTTGTTT+CGG | 0.388813 | 8.2:+78733819 | MS.gene36751:CDS |
| ACTTGGCCAACAAGCCATCT+TGG | 0.392357 | 8.2:+78736462 | MS.gene36751:CDS |
| TTGTCCGGTAATACTAGATC+TGG | 0.395672 | 8.2:-78733721 | None:intergenic |
| GCTGCTGCAGTGGAGGTTGC+CGG | 0.395912 | 8.2:+78733904 | MS.gene36751:CDS |
| TTGAAATTGCAGCAAGAAGA+TGG | 0.398906 | 8.2:+78735705 | MS.gene36751:intron |
| TCGGAATCTATAGCTAGGTT+TGG | 0.407064 | 8.2:+78733838 | MS.gene36751:CDS |
| ATATTAATAGGAATGATCAT+TGG | 0.434233 | 8.2:+78735878 | MS.gene36751:CDS |
| AGTTCCAGATCTAGTATTAC+CGG | 0.444942 | 8.2:+78733717 | MS.gene36751:CDS |
| GGAATATTTACGGTGCCGTC+GGG | 0.453618 | 8.2:+78733928 | MS.gene36751:CDS |
| TGATGAAGTAGAAGAAGAAG+AGG | 0.462264 | 8.2:+78734008 | MS.gene36751:CDS |
| AAGAGAAGACAACATTTCAA+TGG | 0.463032 | 8.2:+78736377 | MS.gene36751:CDS |
| GTTCAAAATTACAGCCAAGA+TGG | 0.463235 | 8.2:-78736476 | None:intergenic |
| GGTTGCCGGAGGAATATTTA+CGG | 0.463294 | 8.2:+78733918 | MS.gene36751:CDS |
| TTACAGCCAAGATGGCTTGT+TGG | 0.474725 | 8.2:-78736468 | None:intergenic |
| TATTAATAGGAATGATCATT+GGG | 0.475240 | 8.2:+78735879 | MS.gene36751:CDS |
| ACTGCAGCAGCCACAATTCG+CGG | 0.481741 | 8.2:-78733892 | None:intergenic |
| ATTGGTCATAGAAATGAAGT+TGG | 0.490467 | 8.2:+78735823 | MS.gene36751:CDS |
| GGCTATAGGCATTGAGTGGA+GGG | 0.491223 | 8.2:+78736313 | MS.gene36751:intron |
| GAGATCGCCGGAGAAACCTC+GGG | 0.491548 | 8.2:+78733969 | MS.gene36751:CDS |
| TTGGAGGGAATTTGGCCTGT+TGG | 0.491974 | 8.2:+78734093 | MS.gene36751:CDS |
| ATGTTTACTCAAAGAAAAGT+TGG | 0.492603 | 8.2:+78736001 | MS.gene36751:CDS |
| ATATTAGAACGTGGTACATA+AGG | 0.493967 | 8.2:-78736498 | None:intergenic |
| TTACTAGGGCACCTTGTTCA+GGG | 0.500069 | 8.2:-78736035 | None:intergenic |
| CGACCGGAGGCTACCGGTGA+TGG | 0.501289 | 8.2:-78733637 | None:intergenic |
| TTATGTTTGCATGTGTGTGA+TGG | 0.501762 | 8.2:+78735964 | MS.gene36751:CDS |
| TGCTTTCAGCTTATTAACCA+TGG | 0.504255 | 8.2:+78733862 | MS.gene36751:CDS |
| TTGTCTTTCTGCCCTGAACA+AGG | 0.507702 | 8.2:+78736024 | MS.gene36751:CDS |
| TCAAAACCCCGAGGTTTCTC+CGG | 0.510007 | 8.2:-78733976 | None:intergenic |
| TGGAATATCGCCGCGAATTG+TGG | 0.513817 | 8.2:+78733882 | MS.gene36751:CDS |
| CCGTGCACCGCCGCCATCAC+CGG | 0.514670 | 8.2:+78733624 | MS.gene36751:CDS |
| CCGGTGATGGCGGCGGTGCA+CGG | 0.517525 | 8.2:-78733624 | None:intergenic |
| ATCAACGGTGGTTTCCGGCA+TGG | 0.522750 | 8.2:-78733599 | None:intergenic |
| GCGAATTGTGGCTGCTGCAG+TGG | 0.524178 | 8.2:+78733894 | MS.gene36751:CDS |
| CAATTCGCGGCGATATTCCA+TGG | 0.533113 | 8.2:-78733879 | None:intergenic |
| TTGGTCATAGAAATGAAGTT+GGG | 0.535395 | 8.2:+78735824 | MS.gene36751:CDS |
| GAGTTGAAGTTGAAATTGGA+GGG | 0.535578 | 8.2:+78734078 | MS.gene36751:CDS |
| GGTGCCCTAGTAATCACTGC+TGG | 0.539493 | 8.2:+78736045 | MS.gene36751:CDS |
| TGTTTCGGGAAAATCTTGTC+CGG | 0.539842 | 8.2:-78733736 | None:intergenic |
| TTGTTTCGGAATCTATAGCT+AGG | 0.540237 | 8.2:+78733833 | MS.gene36751:CDS |
| CTAAAATTAGGATATCCAAC+AGG | 0.541512 | 8.2:-78734108 | None:intergenic |
| AGAGTTGAAGTTGAAATTGG+AGG | 0.544255 | 8.2:+78734077 | MS.gene36751:CDS |
| CACTGCTGGAGATCAAATCC+AGG | 0.545215 | 8.2:+78736059 | MS.gene36751:CDS |
| CGAGATCGCCGGAGAAACCT+CGG | 0.547961 | 8.2:+78733968 | MS.gene36751:CDS |
| AGGAATATTTACGGTGCCGT+CGG | 0.549924 | 8.2:+78733927 | MS.gene36751:CDS |
| GAGGCTACCGGTGATGGCGG+CGG | 0.552842 | 8.2:-78733631 | None:intergenic |
| CCGCCATCACCGGTAGCCTC+CGG | 0.556259 | 8.2:+78733634 | MS.gene36751:CDS |
| TGGCTATAGGCATTGAGTGG+AGG | 0.560050 | 8.2:+78736312 | MS.gene36751:intron |
| GATCTACGACCGGAGGCTAC+CGG | 0.564237 | 8.2:-78733643 | None:intergenic |
| AGTGAAACGAAATCGATCTT+CGG | 0.565003 | 8.2:-78733778 | None:intergenic |
| CGGCACCGTAAATATTCCTC+CGG | 0.565215 | 8.2:-78733923 | None:intergenic |
| TCTACAATCACGTGTGGAGA+AGG | 0.568223 | 8.2:+78735732 | MS.gene36751:CDS |
| ATGGAAAGACCTATTTCACT+TGG | 0.570120 | 8.2:+78736445 | MS.gene36751:CDS |
| ATTGAGTGGAGGGCATTACA+AGG | 0.581852 | 8.2:+78736323 | MS.gene36751:CDS |
| TTACAAGGATGTAATTGGAA+AGG | 0.584583 | 8.2:+78736338 | MS.gene36751:CDS |
| AATTGTGGCTGCTGCAGTGG+AGG | 0.593450 | 8.2:+78733897 | MS.gene36751:CDS |
| AGATGCTGTGACGAGATCGC+CGG | 0.604287 | 8.2:+78733957 | MS.gene36751:CDS |
| GCTGCAGTGGAGGTTGCCGG+AGG | 0.607964 | 8.2:+78733907 | MS.gene36751:CDS |
| CGGCGGTGCACGGAAATCAA+CGG | 0.614742 | 8.2:-78733614 | None:intergenic |
| TGTTACCGTTGATCTACGAC+CGG | 0.620887 | 8.2:-78733653 | None:intergenic |
| ATCTCCAGCAGTGATTACTA+GGG | 0.624399 | 8.2:-78736049 | None:intergenic |
| ACAATCACGTGTGGAGAAGG+TGG | 0.625775 | 8.2:+78735735 | MS.gene36751:CDS |
| CCGGAGGCTACCGGTGATGG+CGG | 0.634988 | 8.2:-78733634 | None:intergenic |
| GCTTGGCTATAGGCATTGAG+TGG | 0.637199 | 8.2:+78736309 | MS.gene36751:intron |
| AACAAACAACGAATTTCTCA+CGG | 0.647495 | 8.2:+78733672 | MS.gene36751:CDS |
| AGCCTCCGGTCGTAGATCAA+CGG | 0.648849 | 8.2:+78733648 | MS.gene36751:CDS |
| GGAAACTCTACAATCACGTG+TGG | 0.665148 | 8.2:+78735726 | MS.gene36751:CDS |
| TAGATCTGGAACTCGAAGCG+AGG | 0.672078 | 8.2:-78733707 | None:intergenic |
| GAAACGAAATCGATCTTCGG+CGG | 0.683182 | 8.2:-78733775 | None:intergenic |
| TACCGTTGATCTACGACCGG+AGG | 0.691657 | 8.2:-78733650 | None:intergenic |
| TAAAGACAAATATTAGAACG+TGG | 0.700039 | 8.2:-78736507 | None:intergenic |
| ACAGCATCTCTCATTCCCGA+CGG | 0.714149 | 8.2:-78733943 | None:intergenic |
| CGGTGCACGGAAATCAACGG+TGG | 0.737046 | 8.2:-78733611 | None:intergenic |
| GTGATTAGAATGCTGATTAG+GGG | 0.740101 | 8.2:+78735922 | MS.gene36751:CDS |
| TGATACTCTTCAAAACCCCG+AGG | 0.741463 | 8.2:-78733985 | None:intergenic |
| AGATCGCCGGAGAAACCTCG+GGG | 0.744747 | 8.2:+78733970 | MS.gene36751:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTAAAGTAGAAAAAT+TGG | + | chr8.2:78735307-78735326 | MS.gene36751:intron | 15.0% |
| !!! | GTTTATTTTGTATATATTGA+TGG | + | chr8.2:78735624-78735643 | MS.gene36751:intron | 15.0% |
| !!! | TGAAAGAATATGTATTTTAT+AGG | + | chr8.2:78735103-78735122 | MS.gene36751:intron | 15.0% |
| !! | AAAACGAAGAAAAAAATAGT+AGG | + | chr8.2:78735581-78735600 | MS.gene36751:intron | 20.0% |
| !! | AAGAAAAAAATAGTAGGTAT+TGG | + | chr8.2:78735587-78735606 | MS.gene36751:intron | 20.0% |
| !! | AAGAAACTTTCAAACAAATA+TGG | + | chr8.2:78736426-78736445 | MS.gene36751:CDS | 20.0% |
| !! | AATTCGAAATACCTAAAATT+AGG | - | chr8.2:78734123-78734142 | None:intergenic | 20.0% |
| !! | AGTTGAATGAAGAATTTATT+TGG | + | chr8.2:78734040-78734059 | MS.gene36751:CDS | 20.0% |
| !! | ATATTAATAGGAATGATCAT+TGG | + | chr8.2:78735878-78735897 | MS.gene36751:CDS | 20.0% |
| !! | ATATTTGTTTGAAAGTTTCT+TGG | - | chr8.2:78736427-78736446 | None:intergenic | 20.0% |
| !! | TATTAATAGGAATGATCATT+GGG | + | chr8.2:78735879-78735898 | MS.gene36751:CDS | 20.0% |
| !! | TTGAACTTCAAAGTTTATTA+AGG | - | chr8.2:78734374-78734393 | None:intergenic | 20.0% |
| !!! | AATCATAAGTAGTTTGTATT+AGG | - | chr8.2:78734596-78734615 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTTCGTTTTTTG+AGG | - | chr8.2:78735578-78735597 | None:intergenic | 20.0% |
| !!! | TACGATATATTTTAACAATC+CGG | - | chr8.2:78734497-78734516 | None:intergenic | 20.0% |
| !!! | TATATAATATTGGGTTTTGA+CGG | + | chr8.2:78734722-78734741 | MS.gene36751:intron | 20.0% |
| ! | AAAAAGAAATTAGCAAGTGA+TGG | + | chr8.2:78735793-78735812 | MS.gene36751:CDS | 25.0% |
| ! | AGCAAAAATGTAAAATTACC+TGG | - | chr8.2:78736080-78736099 | None:intergenic | 25.0% |
| ! | AGCATCATCAAGATATTAAT+AGG | + | chr8.2:78735866-78735885 | MS.gene36751:CDS | 25.0% |
| ! | ATGTACGTATCTAAATTTGT+CGG | - | chr8.2:78735501-78735520 | None:intergenic | 25.0% |
| ! | ATGTTTACTCAAAGAAAAGT+TGG | + | chr8.2:78736001-78736020 | MS.gene36751:CDS | 25.0% |
| ! | ATTGGAAAGGCAATATTTAA+AGG | + | chr8.2:78736351-78736370 | MS.gene36751:CDS | 25.0% |
| ! | CTCAAAATCTTTATTATGCA+AGG | - | chr8.2:78735265-78735284 | None:intergenic | 25.0% |
| ! | TAAAGACAAATATTAGAACG+TGG | - | chr8.2:78736510-78736529 | None:intergenic | 25.0% |
| ! | TGAATTTCAAGGTTTCATTA+AGG | - | chr8.2:78734435-78734454 | None:intergenic | 25.0% |
| !! | AACAATCTATCTTTACGTTT+TGG | + | chr8.2:78735435-78735454 | MS.gene36751:intron | 25.0% |
| !! | CTTGCATAATAAAGATTTTG+AGG | + | chr8.2:78735263-78735282 | MS.gene36751:intron | 25.0% |
| !! | TGAAGGTATAGTCAAAATAT+TGG | - | chr8.2:78736223-78736242 | None:intergenic | 25.0% |
| !! | TTTAGATGAGTTGAATTTCA+AGG | - | chr8.2:78734446-78734465 | None:intergenic | 25.0% |
| !!! | ATATAATATTGGGTTTTGAC+GGG | + | chr8.2:78734723-78734742 | MS.gene36751:intron | 25.0% |
| AACAAACAACGAATTTCTCA+CGG | + | chr8.2:78733672-78733691 | MS.gene36751:CDS | 30.0% | |
| AAGAGAAGACAACATTTCAA+TGG | + | chr8.2:78736377-78736396 | MS.gene36751:CDS | 30.0% | |
| AATTATGTACCTTGCATTTG+TGG | + | chr8.2:78735080-78735099 | MS.gene36751:intron | 30.0% | |
| ACAATTACACACACTCATTT+GGG | + | chr8.2:78734829-78734848 | MS.gene36751:intron | 30.0% | |
| ATATTAGAACGTGGTACATA+AGG | - | chr8.2:78736501-78736520 | None:intergenic | 30.0% | |
| ATTGGTCATAGAAATGAAGT+TGG | + | chr8.2:78735823-78735842 | MS.gene36751:CDS | 30.0% | |
| CGAATGATATGTAGATATCT+CGG | + | chr8.2:78734317-78734336 | MS.gene36751:intron | 30.0% | |
| CTAAAATTAGGATATCCAAC+AGG | - | chr8.2:78734111-78734130 | None:intergenic | 30.0% | |
| TACAATTACACACACTCATT+TGG | + | chr8.2:78734828-78734847 | MS.gene36751:intron | 30.0% | |
| TGAAGAGTTGAAGTTGAAAT+TGG | + | chr8.2:78734074-78734093 | MS.gene36751:CDS | 30.0% | |
| TGATACTCGTAAATCAAACT+CGG | - | chr8.2:78734291-78734310 | None:intergenic | 30.0% | |
| TGTACGTATCTAAATTTGTC+GGG | - | chr8.2:78735500-78735519 | None:intergenic | 30.0% | |
| TTAACGAGTTTGATATTGCT+TGG | + | chr8.2:78736292-78736311 | MS.gene36751:intron | 30.0% | |
| TTACAAGGATGTAATTGGAA+AGG | + | chr8.2:78736338-78736357 | MS.gene36751:CDS | 30.0% | |
| TTGGTCATAGAAATGAAGTT+GGG | + | chr8.2:78735824-78735843 | MS.gene36751:CDS | 30.0% | |
| ! | AGTTTTTATCAAGATTGACG+TGG | + | chr8.2:78734978-78734997 | MS.gene36751:intron | 30.0% |
| ! | ATGTGATTAGAATGCTGATT+AGG | + | chr8.2:78735920-78735939 | MS.gene36751:CDS | 30.0% |
| ! | CTGTTGGATATCCTAATTTT+AGG | + | chr8.2:78734109-78734128 | MS.gene36751:CDS | 30.0% |
| ! | GTTTTTATCAAGATTGACGT+GGG | + | chr8.2:78734979-78734998 | MS.gene36751:intron | 30.0% |
| ! | TAAGAGTGTGAGATATAAAG+TGG | + | chr8.2:78735044-78735063 | MS.gene36751:intron | 30.0% |
| ! | TGTGATTAGAATGCTGATTA+GGG | + | chr8.2:78735921-78735940 | MS.gene36751:CDS | 30.0% |
| !!! | GTATTTTATAGGCACTGATA+AGG | + | chr8.2:78735114-78735133 | MS.gene36751:intron | 30.0% |
| AAAAAACTCCAACTCCACTT+TGG | + | chr8.2:78736139-78736158 | MS.gene36751:intron | 35.0% | |
| AGAGTTGAAGTTGAAATTGG+AGG | + | chr8.2:78734077-78734096 | MS.gene36751:CDS | 35.0% | |
| AGTGAAACGAAATCGATCTT+CGG | - | chr8.2:78733781-78733800 | None:intergenic | 35.0% | |
| AGTTCCAGATCTAGTATTAC+CGG | + | chr8.2:78733717-78733736 | MS.gene36751:CDS | 35.0% | |
| AGTTGAAATTGGAGGGAATT+TGG | + | chr8.2:78734085-78734104 | MS.gene36751:CDS | 35.0% | |
| ATCAAACTCGTTAAGTGAGA+TGG | - | chr8.2:78736286-78736305 | None:intergenic | 35.0% | |
| ATGGAAAGACCTATTTCACT+TGG | + | chr8.2:78736445-78736464 | MS.gene36751:CDS | 35.0% | |
| ATTCTTTCACCACAAATGCA+AGG | - | chr8.2:78735092-78735111 | None:intergenic | 35.0% | |
| ATTTCAAACCAAAGTGGAGT+TGG | - | chr8.2:78736150-78736169 | None:intergenic | 35.0% | |
| CTAAAACACAAGCTCAATCA+TGG | - | chr8.2:78735242-78735261 | None:intergenic | 35.0% | |
| CTTACGTGATCAAGAAGAAT+TGG | + | chr8.2:78734943-78734962 | MS.gene36751:intron | 35.0% | |
| GAGTTGAAGTTGAAATTGGA+GGG | + | chr8.2:78734078-78734097 | MS.gene36751:CDS | 35.0% | |
| GTTCAAAATTACAGCCAAGA+TGG | - | chr8.2:78736479-78736498 | None:intergenic | 35.0% | |
| GTTCGTATTTCAAACCAAAG+TGG | - | chr8.2:78736156-78736175 | None:intergenic | 35.0% | |
| GTTTGATATTGCTTGGCTAT+AGG | + | chr8.2:78736299-78736318 | MS.gene36751:intron | 35.0% | |
| TCAAACTCGTTAAGTGAGAT+GGG | - | chr8.2:78736285-78736304 | None:intergenic | 35.0% | |
| TGATGAAGTAGAAGAAGAAG+AGG | + | chr8.2:78734008-78734027 | MS.gene36751:CDS | 35.0% | |
| TGCTTTCAGCTTATTAACCA+TGG | + | chr8.2:78733862-78733881 | MS.gene36751:CDS | 35.0% | |
| TTAACTTACGTCCAAAGTTG+TGG | + | chr8.2:78734256-78734275 | MS.gene36751:intron | 35.0% | |
| TTATGTTTGCATGTGTGTGA+TGG | + | chr8.2:78735964-78735983 | MS.gene36751:CDS | 35.0% | |
| TTCAAGGTTTCATTAAGGTC+AGG | - | chr8.2:78734430-78734449 | None:intergenic | 35.0% | |
| TTGAAATTGCAGCAAGAAGA+TGG | + | chr8.2:78735705-78735724 | MS.gene36751:intron | 35.0% | |
| TTGTTTCGGAATCTATAGCT+AGG | + | chr8.2:78733833-78733852 | MS.gene36751:CDS | 35.0% | |
| ! | GAAAGTTTCTTGGCATTTTG+AGG | - | chr8.2:78736417-78736436 | None:intergenic | 35.0% |
| ! | GCAAGTGATGGTGATATAAT+TGG | + | chr8.2:78735805-78735824 | MS.gene36751:CDS | 35.0% |
| ! | GTGATTAGAATGCTGATTAG+GGG | + | chr8.2:78735922-78735941 | MS.gene36751:CDS | 35.0% |
| !! | TTTTGCTGTCATGAGATTGA+AGG | - | chr8.2:78736240-78736259 | None:intergenic | 35.0% |
| ACACACACTCATTTGGGAAA+TGG | + | chr8.2:78734835-78734854 | MS.gene36751:intron | 40.0% | |
| ATCTCCAGCAGTGATTACTA+GGG | - | chr8.2:78736052-78736071 | None:intergenic | 40.0% | |
| ATTGGCACACTAGCATTAAG+AGG | - | chr8.2:78736205-78736224 | None:intergenic | 40.0% | |
| CAATATTAATCGCGTCAGAG+TGG | - | chr8.2:78734900-78734919 | None:intergenic | 40.0% | |
| GGAAGTTGAATCCACAACTT+TGG | - | chr8.2:78734270-78734289 | None:intergenic | 40.0% | |
| GGATCTCATTGACGTTGTTT+CGG | + | chr8.2:78733819-78733838 | MS.gene36751:CDS | 40.0% | |
| GGGCATTACAAGGATGTAAT+TGG | + | chr8.2:78736333-78736352 | MS.gene36751:CDS | 40.0% | |
| GTTTCGTCATTGCTCTGTTT+CGG | - | chr8.2:78733754-78733773 | None:intergenic | 40.0% | |
| TCGGAATCTATAGCTAGGTT+TGG | + | chr8.2:78733838-78733857 | MS.gene36751:CDS | 40.0% | |
| TGTTTCGGGAAAATCTTGTC+CGG | - | chr8.2:78733739-78733758 | None:intergenic | 40.0% | |
| TTGTCCGGTAATACTAGATC+TGG | - | chr8.2:78733724-78733743 | None:intergenic | 40.0% | |
| TTTCGTCATTGCTCTGTTTC+GGG | - | chr8.2:78733753-78733772 | None:intergenic | 40.0% | |
| ! | ACTGTGTTTTCACGAAGATG+AGG | + | chr8.2:78733798-78733817 | MS.gene36751:CDS | 40.0% |
| ! | GAAGGTGGCTGAGAAAATTT+TGG | + | chr8.2:78735750-78735769 | MS.gene36751:CDS | 40.0% |
| !! | TGGCATTTTGAGGAGAATAG+AGG | - | chr8.2:78736407-78736426 | None:intergenic | 40.0% |
| ACGACTATTGCTAGCCATTG+AGG | + | chr8.2:78735196-78735215 | MS.gene36751:intron | 45.0% | |
| ACTATCCTGTAACGCCTCAA+TGG | - | chr8.2:78735213-78735232 | None:intergenic | 45.0% | |
| AGTCGTTAGAGAGCGGTAAA+AGG | + | chr8.2:78735137-78735156 | MS.gene36751:intron | 45.0% | |
| CAATGGCTAGCAATAGTCGT+TGG | - | chr8.2:78735196-78735215 | None:intergenic | 45.0% | |
| CGAATTTCTCACGGAGTTTC+TGG | + | chr8.2:78733681-78733700 | MS.gene36751:CDS | 45.0% | |
| GAAACGAAATCGATCTTCGG+CGG | - | chr8.2:78733778-78733797 | None:intergenic | 45.0% | |
| GATAAGGAGTCGTTAGAGAG+CGG | + | chr8.2:78735130-78735149 | MS.gene36751:intron | 45.0% | |
| GATCTCCAGCAGTGATTACT+AGG | - | chr8.2:78736053-78736072 | None:intergenic | 45.0% | |
| GGAAACTCTACAATCACGTG+TGG | + | chr8.2:78735726-78735745 | MS.gene36751:CDS | 45.0% | |
| GGTTGCCGGAGGAATATTTA+CGG | + | chr8.2:78733918-78733937 | MS.gene36751:CDS | 45.0% | |
| TCTACAATCACGTGTGGAGA+AGG | + | chr8.2:78735732-78735751 | MS.gene36751:CDS | 45.0% | |
| TGATACTCTTCAAAACCCCG+AGG | - | chr8.2:78733988-78734007 | None:intergenic | 45.0% | |
| TGTTACCGTTGATCTACGAC+CGG | - | chr8.2:78733656-78733675 | None:intergenic | 45.0% | |
| TTGTCTTTCTGCCCTGAACA+AGG | + | chr8.2:78736024-78736043 | MS.gene36751:CDS | 45.0% | |
| ! | ATTACTAGGGCACCTTGTTC+AGG | - | chr8.2:78736039-78736058 | None:intergenic | 45.0% |
| ! | GCTTGTTGGCCAAGTGAAAT+AGG | - | chr8.2:78736457-78736476 | None:intergenic | 45.0% |
| ! | TTACAGCCAAGATGGCTTGT+TGG | - | chr8.2:78736471-78736490 | None:intergenic | 45.0% |
| ! | TTACTAGGGCACCTTGTTCA+GGG | - | chr8.2:78736038-78736057 | None:intergenic | 45.0% |
| !! | AGGAATATTTACGGTGCCGT+CGG | + | chr8.2:78733927-78733946 | MS.gene36751:CDS | 45.0% |
| !! | ATTGAGTGGAGGGCATTACA+AGG | + | chr8.2:78736323-78736342 | MS.gene36751:CDS | 45.0% |
| !! | TGGGTTTTGACGGGAAACAA+GGG | + | chr8.2:78734732-78734751 | MS.gene36751:intron | 45.0% |
| !! | TTGGGTTTTGACGGGAAACA+AGG | + | chr8.2:78734731-78734750 | MS.gene36751:intron | 45.0% |
| !! | ATAAAAAAAAAAAAAAAAAC+CGG | + | chr8.2:78734475-78734494 | MS.gene36751:intron | 5.0% |
| !!! | AAAAAAGTATATATAATATT+GGG | + | chr8.2:78734713-78734732 | MS.gene36751:intron | 5.0% |
| !!! | TAAAAAAGTATATATAATAT+TGG | + | chr8.2:78734712-78734731 | MS.gene36751:intron | 5.0% |
| ACAATCACGTGTGGAGAAGG+TGG | + | chr8.2:78735735-78735754 | MS.gene36751:CDS | 50.0% | |
| ACAGCATCTCTCATTCCCGA+CGG | - | chr8.2:78733946-78733965 | None:intergenic | 50.0% | |
| ACTTGGCCAACAAGCCATCT+TGG | + | chr8.2:78736462-78736481 | MS.gene36751:CDS | 50.0% | |
| CAATTCGCGGCGATATTCCA+TGG | - | chr8.2:78733882-78733901 | None:intergenic | 50.0% | |
| CACTGCTGGAGATCAAATCC+AGG | + | chr8.2:78736059-78736078 | MS.gene36751:CDS | 50.0% | |
| CGGAAATCAACGGTGGTTTC+CGG | - | chr8.2:78733607-78733626 | None:intergenic | 50.0% | |
| CGGCACCGTAAATATTCCTC+CGG | - | chr8.2:78733926-78733945 | None:intergenic | 50.0% | |
| CTAGATTCCGTGCAACTGGA+GGG | - | chr8.2:78735385-78735404 | None:intergenic | 50.0% | |
| GAACCTAGATTCCGTGCAAC+TGG | - | chr8.2:78735389-78735408 | None:intergenic | 50.0% | |
| TAGATTCCGTGCAACTGGAG+GGG | - | chr8.2:78735384-78735403 | None:intergenic | 50.0% | |
| TCAAAACCCCGAGGTTTCTC+CGG | - | chr8.2:78733979-78733998 | None:intergenic | 50.0% | |
| TGGAATATCGCCGCGAATTG+TGG | + | chr8.2:78733882-78733901 | MS.gene36751:CDS | 50.0% | |
| TTGGAGGGAATTTGGCCTGT+TGG | + | chr8.2:78734093-78734112 | MS.gene36751:CDS | 50.0% | |
| ! | TAGATCTGGAACTCGAAGCG+AGG | - | chr8.2:78733710-78733729 | None:intergenic | 50.0% |
| !! | CATTGACTTGAGCGTCAGAG+TGG | - | chr8.2:78735018-78735037 | None:intergenic | 50.0% |
| !! | GCTTGGCTATAGGCATTGAG+TGG | + | chr8.2:78736309-78736328 | MS.gene36751:intron | 50.0% |
| !! | GGAATATTTACGGTGCCGTC+GGG | + | chr8.2:78733928-78733947 | MS.gene36751:CDS | 50.0% |
| !! | GGCTATAGGCATTGAGTGGA+GGG | + | chr8.2:78736313-78736332 | MS.gene36751:intron | 50.0% |
| !! | TGGCTATAGGCATTGAGTGG+AGG | + | chr8.2:78736312-78736331 | MS.gene36751:intron | 50.0% |
| AATCGCGTCAGAGTGGCTAC+AGG | - | chr8.2:78734893-78734912 | None:intergenic | 55.0% | |
| AATTGTGGCTGCTGCAGTGG+AGG | + | chr8.2:78733897-78733916 | MS.gene36751:CDS | 55.0% | |
| ACTGCAGCAGCCACAATTCG+CGG | - | chr8.2:78733895-78733914 | None:intergenic | 55.0% | |
| AGATGCTGTGACGAGATCGC+CGG | + | chr8.2:78733957-78733976 | MS.gene36751:CDS | 55.0% | |
| AGATTCCCCCTCCAGTTGCA+CGG | + | chr8.2:78735375-78735394 | MS.gene36751:intron | 55.0% | |
| AGATTCCGTGCAACTGGAGG+GGG | - | chr8.2:78735383-78735402 | None:intergenic | 55.0% | |
| AGCCTCCGGTCGTAGATCAA+CGG | + | chr8.2:78733648-78733667 | MS.gene36751:CDS | 55.0% | |
| CCTAGATTCCGTGCAACTGG+AGG | - | chr8.2:78735386-78735405 | None:intergenic | 55.0% | |
| CCTCCAGTTGCACGGAATCT+AGG | + | chr8.2:78735383-78735402 | MS.gene36751:intron | 55.0% | |
| GGTGCCCTAGTAATCACTGC+TGG | + | chr8.2:78736045-78736064 | MS.gene36751:CDS | 55.0% | |
| TACCGTTGATCTACGACCGG+AGG | - | chr8.2:78733653-78733672 | None:intergenic | 55.0% | |
| TTGAGCGTCAGAGTGGCTAC+AGG | - | chr8.2:78735011-78735030 | None:intergenic | 55.0% | |
| ! | GCTAGCCATTGAGGCGTTAC+AGG | + | chr8.2:78735205-78735224 | MS.gene36751:intron | 55.0% |
| AGATCGCCGGAGAAACCTCG+GGG | + | chr8.2:78733970-78733989 | MS.gene36751:CDS | 60.0% | |
| CGAGATCGCCGGAGAAACCT+CGG | + | chr8.2:78733968-78733987 | MS.gene36751:CDS | 60.0% | |
| CGGCGGTGCACGGAAATCAA+CGG | - | chr8.2:78733617-78733636 | None:intergenic | 60.0% | |
| CGGTGCACGGAAATCAACGG+TGG | - | chr8.2:78733614-78733633 | None:intergenic | 60.0% | |
| GAGATCGCCGGAGAAACCTC+GGG | + | chr8.2:78733969-78733988 | MS.gene36751:CDS | 60.0% | |
| GATCTACGACCGGAGGCTAC+CGG | - | chr8.2:78733646-78733665 | None:intergenic | 60.0% | |
| GCGAATTGTGGCTGCTGCAG+TGG | + | chr8.2:78733894-78733913 | MS.gene36751:CDS | 60.0% | |
| GCTGCTGCAGTGGAGGTTGC+CGG | + | chr8.2:78733904-78733923 | MS.gene36751:CDS | 65.0% | |
| CCGCCATCACCGGTAGCCTC+CGG | + | chr8.2:78733634-78733653 | MS.gene36751:CDS | 70.0% | |
| CGACCGGAGGCTACCGGTGA+TGG | - | chr8.2:78733640-78733659 | None:intergenic | 70.0% | |
| GCTGCAGTGGAGGTTGCCGG+AGG | + | chr8.2:78733907-78733926 | MS.gene36751:CDS | 70.0% | |
| ! | CCGGAGGCTACCGGTGATGG+CGG | - | chr8.2:78733637-78733656 | None:intergenic | 70.0% |
| !! | GAGGCTACCGGTGATGGCGG+CGG | - | chr8.2:78733634-78733653 | None:intergenic | 70.0% |
| CCGTGCACCGCCGCCATCAC+CGG | + | chr8.2:78733624-78733643 | MS.gene36751:CDS | 75.0% | |
| !! | CCGGTGATGGCGGCGGTGCA+CGG | - | chr8.2:78733627-78733646 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 78733601 | 78736530 | 78733601 | ID=MS.gene36751 |
| chr8.2 | mRNA | 78733601 | 78736530 | 78733601 | ID=MS.gene36751.t1;Parent=MS.gene36751 |
| chr8.2 | exon | 78733601 | 78734130 | 78733601 | ID=MS.gene36751.t1.exon1;Parent=MS.gene36751.t1 |
| chr8.2 | CDS | 78733601 | 78734130 | 78733601 | ID=cds.MS.gene36751.t1;Parent=MS.gene36751.t1 |
| chr8.2 | exon | 78735717 | 78736080 | 78735717 | ID=MS.gene36751.t1.exon2;Parent=MS.gene36751.t1 |
| chr8.2 | CDS | 78735717 | 78736080 | 78735717 | ID=cds.MS.gene36751.t1;Parent=MS.gene36751.t1 |
| chr8.2 | exon | 78736321 | 78736530 | 78736321 | ID=MS.gene36751.t1.exon3;Parent=MS.gene36751.t1 |
| chr8.2 | CDS | 78736321 | 78736530 | 78736321 | ID=cds.MS.gene36751.t1;Parent=MS.gene36751.t1 |
| Gene Sequence |
| Protein sequence |
