Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36983.t1 | XP_003626998.1 | 98 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 3.20E-103 | 384.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36983.t1 | A7P756 | 70.8 | 185 | 54 | 0 | 18 | 202 | 26 | 210 | 1.1e-67 | 257.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36983.t1 | G7LFX8 | 98.0 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 2.3e-103 | 384.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050338 | MS.gene36983 | 0.818152 | 2.28E-52 | -1.69E-46 |
| MS.gene052383 | MS.gene36983 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene36983 | 0.816371 | 5.72E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36983.t1 | MTR_8g013900 | 98.020 | 202 | 4 | 0 | 1 | 202 | 1 | 202 | 2.34e-145 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36983.t1 | AT3G16300 | 48.045 | 179 | 93 | 0 | 24 | 202 | 33 | 211 | 3.37e-53 | 169 |
| MS.gene36983.t1 | AT1G79780 | 47.191 | 178 | 91 | 1 | 26 | 200 | 8 | 185 | 2.77e-51 | 164 |
Find 36 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCACGTCAAGATTTCTT+AGG | 0.200483 | 8.1:+83400215 | MS.gene36983:CDS |
| CTTTGGGCAGATTTCTTGTT+GGG | 0.281342 | 8.1:+83400149 | MS.gene36983:intron |
| CTGCTGTGCATGATGTTATA+TGG | 0.353776 | 8.1:+83401333 | MS.gene36983:CDS |
| CTCCGTTCTCCGGCGTCGAC+TGG | 0.358436 | 8.1:-83397917 | None:intergenic |
| AGCAGTTCTGTCTCTATCTA+TGG | 0.366482 | 8.1:+83398018 | MS.gene36983:CDS |
| TCTTTGGGCAGATTTCTTGT+TGG | 0.386386 | 8.1:+83400148 | MS.gene36983:intron |
| AGTGCTGGATCAGCTGCATC+TGG | 0.402362 | 8.1:+83401176 | MS.gene36983:CDS |
| AATTCCAGTGCGATTTAGAT+TGG | 0.408297 | 8.1:-83401204 | None:intergenic |
| AAAACAGCTGATGAAATTGA+AGG | 0.435057 | 8.1:-83401297 | None:intergenic |
| GATTCTTCGAGCTTTATGTA+TGG | 0.438398 | 8.1:+83397951 | MS.gene36983:CDS |
| GCTTATGCATTGATGAGTGC+TGG | 0.443070 | 8.1:+83401161 | MS.gene36983:CDS |
| AAAGTCCACTTAGAATGAAC+AGG | 0.463744 | 8.1:-83398051 | None:intergenic |
| TGGCACGTCAAGATTTCTTA+GGG | 0.465265 | 8.1:+83400216 | MS.gene36983:CDS |
| ACTTACCTGTTCATTCTAAG+TGG | 0.469506 | 8.1:+83398046 | MS.gene36983:CDS |
| GCAGCATCACCTCCGTTCTC+CGG | 0.490610 | 8.1:-83397927 | None:intergenic |
| TCATTGCTGCAACTACTCAT+TGG | 0.498018 | 8.1:+83400196 | MS.gene36983:CDS |
| AAAGAAAATTACTCATATGA+AGG | 0.512833 | 8.1:-83398078 | None:intergenic |
| CAGCAATGAGTGGGCTGCAA+CGG | 0.516377 | 8.1:-83400182 | None:intergenic |
| ATTCTTCGAGCTTTATGTAT+GGG | 0.528194 | 8.1:+83397952 | MS.gene36983:CDS |
| TTTGGGCAGATTTCTTGTTG+GGG | 0.529337 | 8.1:+83400150 | MS.gene36983:intron |
| AGTGGTCCTCTCGTCGGAGA+CGG | 0.540971 | 8.1:+83397886 | MS.gene36983:CDS |
| TTTCTTCTAGAAAGCATGCA+TGG | 0.543498 | 8.1:+83400251 | MS.gene36983:CDS |
| TTCTTCTAGAAAGCATGCAT+GGG | 0.549266 | 8.1:+83400252 | MS.gene36983:CDS |
| GTAACCAATCTAAATCGCAC+TGG | 0.549479 | 8.1:+83401200 | MS.gene36983:CDS |
| GACCAGTCGACGCCGGAGAA+CGG | 0.550612 | 8.1:+83397915 | MS.gene36983:CDS |
| TGGTCACAAAATTTGTGCAA+AGG | 0.572337 | 8.1:-83401257 | None:intergenic |
| TGAGTAGTTGCAGCAATGAG+TGG | 0.588948 | 8.1:-83400192 | None:intergenic |
| AACATCATGCACAGCAGATG+TGG | 0.599570 | 8.1:-83401327 | None:intergenic |
| GCGAAAAGACCAGTCGACGC+CGG | 0.613120 | 8.1:+83397908 | MS.gene36983:CDS |
| GAAATTGAAGGCTATTGAGA+TGG | 0.617309 | 8.1:-83401285 | None:intergenic |
| AGAATGAGTGGTCCTCTCGT+CGG | 0.640368 | 8.1:+83397880 | MS.gene36983:CDS |
| ACAGCAGCTTTAGAGTGCAG+TGG | 0.647077 | 8.1:+83397850 | MS.gene36983:CDS |
| CAGTCGACGCCGGAGAACGG+AGG | 0.650567 | 8.1:+83397918 | MS.gene36983:CDS |
| AGTGGATCAACTAGAATGAG+TGG | 0.652710 | 8.1:+83397868 | MS.gene36983:CDS |
| AGGCTATTGAGATGGCAACA+TGG | 0.653048 | 8.1:-83401277 | None:intergenic |
| GAGTAGTTGCAGCAATGAGT+GGG | 0.669558 | 8.1:-83400191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAATTTATAAATACTAT+AGG | - | chr8.1:83401052-83401071 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAGTTTTTTTAG+GGG | + | chr8.1:83398733-83398752 | MS.gene36983:intron | 10.0% |
| !!! | AAAAAACTTTTTTTTTTTGA+AGG | - | chr8.1:83398730-83398749 | None:intergenic | 10.0% |
| !!! | AATGAAATTATTTTCTTAAA+AGG | + | chr8.1:83399296-83399315 | MS.gene36983:intron | 10.0% |
| !!! | ACTTTAAAAGTTTTTTTTTT+AGG | + | chr8.1:83398700-83398719 | MS.gene36983:intron | 10.0% |
| !!! | AGTTTTGATATATTATTTTT+TGG | + | chr8.1:83398767-83398786 | MS.gene36983:intron | 10.0% |
| !!! | CAAAAAAAAAAAGTTTTTTT+AGG | + | chr8.1:83398731-83398750 | MS.gene36983:intron | 10.0% |
| !!! | CTTTAAAAGTTTTTTTTTTA+GGG | + | chr8.1:83398701-83398720 | MS.gene36983:intron | 10.0% |
| !!! | TTAGTTTTATATTAAAATGT+AGG | + | chr8.1:83400112-83400131 | MS.gene36983:intron | 10.0% |
| !!! | TTTAAAAGTTTTTTTTTTAG+GGG | + | chr8.1:83398702-83398721 | MS.gene36983:intron | 10.0% |
| !! | AAAAAAAAAAGTTAAATGGA+AGG | + | chr8.1:83398613-83398632 | MS.gene36983:intron | 15.0% |
| !! | AATATCTGATGTAAAATTTA+GGG | + | chr8.1:83399396-83399415 | MS.gene36983:intron | 15.0% |
| !! | AGACATATGATTATTTATTA+GGG | - | chr8.1:83400513-83400532 | None:intergenic | 15.0% |
| !! | ATGATAATCAAAATTAATCT+AGG | + | chr8.1:83400383-83400402 | MS.gene36983:intron | 15.0% |
| !! | TAATATCTGATGTAAAATTT+AGG | + | chr8.1:83399395-83399414 | MS.gene36983:intron | 15.0% |
| !!! | CTTTTTTTTCTTTTCAATTA+GGG | + | chr8.1:83398670-83398689 | MS.gene36983:intron | 15.0% |
| !!! | TAATATATCAAAACTTTTGA+AGG | - | chr8.1:83398762-83398781 | None:intergenic | 15.0% |
| !!! | TATATGCATTTTTTTTTTGA+GGG | - | chr8.1:83399756-83399775 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAGGTTATAT+AGG | - | chr8.1:83400664-83400683 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTTCTTTTCAATT+AGG | + | chr8.1:83398669-83398688 | MS.gene36983:intron | 15.0% |
| !!! | TTAAAATCAGTTTTTAAATG+AGG | + | chr8.1:83398638-83398657 | MS.gene36983:intron | 15.0% |
| !!! | TTGAGTTCATTTTTTATTAT+TGG | + | chr8.1:83398319-83398338 | MS.gene36983:intron | 15.0% |
| !!! | TTGATATATAAATTTTTACG+TGG | + | chr8.1:83399710-83399729 | MS.gene36983:intron | 15.0% |
| !!! | TTTAATTTCATATAGTTGAA+GGG | + | chr8.1:83399437-83399456 | MS.gene36983:intron | 15.0% |
| !!! | TTTTAACTTTGTTTTTGTTT+TGG | + | chr8.1:83398179-83398198 | MS.gene36983:intron | 15.0% |
| !!! | TTTTGTGTTGATTTTTTAAA+GGG | + | chr8.1:83399150-83399169 | MS.gene36983:intron | 15.0% |
| !!! | TTTTTGTGTTGATTTTTTAA+AGG | + | chr8.1:83399149-83399168 | MS.gene36983:intron | 15.0% |
| !!! | TTTTTTTTCTTTTCAATTAG+GGG | + | chr8.1:83398671-83398690 | MS.gene36983:intron | 15.0% |
| !! | AAAGAAAATTACTCATATGA+AGG | - | chr8.1:83398081-83398100 | None:intergenic | 20.0% |
| !! | AAATATACAAACTTAGTGTT+GGG | + | chr8.1:83400406-83400425 | MS.gene36983:intron | 20.0% |
| !! | AATGTTTGTGTTAATAATAG+AGG | - | chr8.1:83398489-83398508 | None:intergenic | 20.0% |
| !! | AATTGAATTTGAATATTCAC+TGG | + | chr8.1:83398346-83398365 | MS.gene36983:intron | 20.0% |
| !! | AGAAAATATTCATTGATAAG+AGG | + | chr8.1:83398296-83398315 | MS.gene36983:intron | 20.0% |
| !! | ATAAAAATACAAGCTATGTT+TGG | + | chr8.1:83400675-83400694 | MS.gene36983:intron | 20.0% |
| !! | GAAAAATAGTTGAAAAAGAA+AGG | - | chr8.1:83398995-83399014 | None:intergenic | 20.0% |
| !! | GAGACATATGATTATTTATT+AGG | - | chr8.1:83400514-83400533 | None:intergenic | 20.0% |
| !! | GGTGATACATAAATAAAATT+GGG | - | chr8.1:83399505-83399524 | None:intergenic | 20.0% |
| !! | TAAAGTAAACAATCAATTGA+TGG | - | chr8.1:83401010-83401029 | None:intergenic | 20.0% |
| !! | TGGTTAAGCAATTTATAAAA+AGG | + | chr8.1:83399187-83399206 | MS.gene36983:intron | 20.0% |
| !! | TGTGATAATTCATGATTAAT+TGG | - | chr8.1:83399625-83399644 | None:intergenic | 20.0% |
| !! | TTATAAATACTATAGGAGAA+AGG | - | chr8.1:83401045-83401064 | None:intergenic | 20.0% |
| !!! | AGGTTTATGATTTTTATCTT+TGG | + | chr8.1:83400132-83400151 | MS.gene36983:intron | 20.0% |
| !!! | GAAGTTATTTTTTATCGATA+TGG | - | chr8.1:83398549-83398568 | None:intergenic | 20.0% |
| !!! | GGTTTATGATTTTTATCTTT+GGG | + | chr8.1:83400133-83400152 | MS.gene36983:intron | 20.0% |
| !!! | GTATATGCATTTTTTTTTTG+AGG | - | chr8.1:83399757-83399776 | None:intergenic | 20.0% |
| !!! | GTTTAATTTCATATAGTTGA+AGG | + | chr8.1:83399436-83399455 | MS.gene36983:intron | 20.0% |
| !!! | TAATATAAAGTCTTATCCAT+AGG | - | chr8.1:83399569-83399588 | None:intergenic | 20.0% |
| ! | ATAATTAAGTAGTTGCCTTA+AGG | - | chr8.1:83400595-83400614 | None:intergenic | 25.0% |
| ! | CTGTAAATAGACTATTAGAT+TGG | + | chr8.1:83399860-83399879 | MS.gene36983:intron | 25.0% |
| ! | GAAATATACAAACTTAGTGT+TGG | + | chr8.1:83400405-83400424 | MS.gene36983:intron | 25.0% |
| ! | GAGTTGAAACTATAGATATT+TGG | - | chr8.1:83399985-83400004 | None:intergenic | 25.0% |
| ! | GATACATAAATAAAATTGGG+AGG | - | chr8.1:83399502-83399521 | None:intergenic | 25.0% |
| ! | GGGTGATACATAAATAAAAT+TGG | - | chr8.1:83399506-83399525 | None:intergenic | 25.0% |
| ! | TAACTTCAAAACAAGTGAAT+TGG | + | chr8.1:83398562-83398581 | MS.gene36983:intron | 25.0% |
| ! | TACAAGAATCATTTACATTG+CGG | - | chr8.1:83399102-83399121 | None:intergenic | 25.0% |
| ! | TCAAATTAACATTCTCTCTT+GGG | - | chr8.1:83399527-83399546 | None:intergenic | 25.0% |
| ! | TCTGACATTACTGTAAATTT+AGG | + | chr8.1:83401076-83401095 | MS.gene36983:intron | 25.0% |
| ! | TTATGTTGAGAATAATGTGA+AGG | + | chr8.1:83398267-83398286 | MS.gene36983:intron | 25.0% |
| !! | AGTAATATTTCGAACTTGTT+TGG | + | chr8.1:83399065-83399084 | MS.gene36983:intron | 25.0% |
| !! | TCAATTGATGGTAATATAAC+TGG | - | chr8.1:83400998-83401017 | None:intergenic | 25.0% |
| !!! | AACTATAAGTGTTACTTTTG+TGG | + | chr8.1:83401121-83401140 | MS.gene36983:intron | 25.0% |
| !!! | AGCTTTTGATTTCAAGTTAA+TGG | + | chr8.1:83399953-83399972 | MS.gene36983:intron | 25.0% |
| !!! | ATTCAATTTGTTAGCTCTTA+GGG | + | chr8.1:83398809-83398828 | MS.gene36983:intron | 25.0% |
| !!! | CATAGCTTGTATTTTTATGT+AGG | - | chr8.1:83400673-83400692 | None:intergenic | 25.0% |
| !!! | TATTCAATTTGTTAGCTCTT+AGG | + | chr8.1:83398808-83398827 | MS.gene36983:intron | 25.0% |
| !!! | TTTTGATTTCAAGTTAATGG+AGG | + | chr8.1:83399956-83399975 | MS.gene36983:intron | 25.0% |
| AAAAATGAGAGATTCGATCA+CGG | - | chr8.1:83398941-83398960 | None:intergenic | 30.0% | |
| AAAACAGCTGATGAAATTGA+AGG | - | chr8.1:83401300-83401319 | None:intergenic | 30.0% | |
| AAGTGAATTGGAGATGAAAT+TGG | + | chr8.1:83398574-83398593 | MS.gene36983:intron | 30.0% | |
| ATGTAGGTCACAAATATTCA+TGG | - | chr8.1:83400639-83400658 | None:intergenic | 30.0% | |
| ATTGGAGATGAAATTGGATT+AGG | + | chr8.1:83398580-83398599 | MS.gene36983:intron | 30.0% | |
| CAAATTAACATTCTCTCTTG+GGG | - | chr8.1:83399526-83399545 | None:intergenic | 30.0% | |
| CAAGAAACTACAACAAAGAA+AGG | - | chr8.1:83398392-83398411 | None:intergenic | 30.0% | |
| CTCAAATTAACATTCTCTCT+TGG | - | chr8.1:83399528-83399547 | None:intergenic | 30.0% | |
| GAATCTATAAAAGACACATG+AGG | - | chr8.1:83399044-83399063 | None:intergenic | 30.0% | |
| GGATCAGGTACATATATATA+TGG | + | chr8.1:83400288-83400307 | MS.gene36983:intron | 30.0% | |
| GTTGTGTGGAATTAACAAAT+GGG | + | chr8.1:83398831-83398850 | MS.gene36983:intron | 30.0% | |
| TCTACTTAGCATATGTTCAA+GGG | + | chr8.1:83399229-83399248 | MS.gene36983:intron | 30.0% | |
| TTGTGTTATCTACTTTGATC+CGG | + | chr8.1:83399813-83399832 | MS.gene36983:intron | 30.0% | |
| ! | ATATAGTTGAAGGGAGTATA+AGG | + | chr8.1:83399446-83399465 | MS.gene36983:intron | 30.0% |
| ! | ATTCTTCGAGCTTTATGTAT+GGG | + | chr8.1:83397952-83397971 | MS.gene36983:CDS | 30.0% |
| ! | CTTTCTTTGTTGTAGTTTCT+TGG | + | chr8.1:83398390-83398409 | MS.gene36983:intron | 30.0% |
| ! | GGATTGAAGATGATTTTGAA+GGG | + | chr8.1:83399903-83399922 | MS.gene36983:intron | 30.0% |
| ! | TACTTTTGTGGTAAAATTGC+AGG | + | chr8.1:83401133-83401152 | MS.gene36983:intron | 30.0% |
| ! | TATAGTTGAAGGGAGTATAA+GGG | + | chr8.1:83399447-83399466 | MS.gene36983:intron | 30.0% |
| !! | TGGAATTAACAAATGGGTTA+TGG | + | chr8.1:83398837-83398856 | MS.gene36983:intron | 30.0% |
| !! | TGTGGTCTTATATGTATTTG+TGG | + | chr8.1:83398462-83398481 | MS.gene36983:intron | 30.0% |
| !!! | GAACGAAATACGGTTTTAAA+TGG | + | chr8.1:83399258-83399277 | MS.gene36983:intron | 30.0% |
| !!! | GCTCTGATTTTTGAAGTAAT+TGG | - | chr8.1:83399672-83399691 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGGAGAGAGAAA+AGG | + | chr8.1:83398191-83398210 | MS.gene36983:intron | 30.0% |
| AAAATGAGAGATTCGATCAC+GGG | - | chr8.1:83398940-83398959 | None:intergenic | 35.0% | |
| AAAGTCCACTTAGAATGAAC+AGG | - | chr8.1:83398054-83398073 | None:intergenic | 35.0% | |
| AACCAAGTATCACTTGAAAG+TGG | + | chr8.1:83400067-83400086 | MS.gene36983:intron | 35.0% | |
| AACTTAGTTATGAGTCCGTT+AGG | - | chr8.1:83400929-83400948 | None:intergenic | 35.0% | |
| AATTCCAGTGCGATTTAGAT+TGG | - | chr8.1:83401207-83401226 | None:intergenic | 35.0% | |
| ACTTACCTGTTCATTCTAAG+TGG | + | chr8.1:83398046-83398065 | MS.gene36983:CDS | 35.0% | |
| ATAAAAGACACATGAGGCTA+AGG | - | chr8.1:83399038-83399057 | None:intergenic | 35.0% | |
| ATGTTTCTTACATGTCTCTC+CGG | - | chr8.1:83399835-83399854 | None:intergenic | 35.0% | |
| ATTGCTTAACCAATGCCTAA+CGG | - | chr8.1:83399179-83399198 | None:intergenic | 35.0% | |
| CTCAAATGAGTCAATCCTAA+CGG | + | chr8.1:83400911-83400930 | MS.gene36983:intron | 35.0% | |
| CTCTACTTAGCATATGTTCA+AGG | + | chr8.1:83399228-83399247 | MS.gene36983:intron | 35.0% | |
| GAAATTGAAGGCTATTGAGA+TGG | - | chr8.1:83401288-83401307 | None:intergenic | 35.0% | |
| GAGAGACATGTAAGAAACAT+TGG | + | chr8.1:83399835-83399854 | MS.gene36983:intron | 35.0% | |
| GGTTGTGTGGAATTAACAAA+TGG | + | chr8.1:83398830-83398849 | MS.gene36983:intron | 35.0% | |
| GTAGGTTATATAGGCAATGT+AGG | - | chr8.1:83400655-83400674 | None:intergenic | 35.0% | |
| TAAGTCTTGCGAATACCTTA+AGG | + | chr8.1:83400577-83400596 | MS.gene36983:intron | 35.0% | |
| TGCAAAGGCTTGCAAAAATT+TGG | - | chr8.1:83401245-83401264 | None:intergenic | 35.0% | |
| TGGTCACAAAATTTGTGCAA+AGG | - | chr8.1:83401260-83401279 | None:intergenic | 35.0% | |
| ! | ATAACTGGATATTTGCTAGC+TGG | - | chr8.1:83400983-83401002 | None:intergenic | 35.0% |
| ! | CGGATTGAAGATGATTTTGA+AGG | + | chr8.1:83399902-83399921 | MS.gene36983:intron | 35.0% |
| ! | GATTCTTCGAGCTTTATGTA+TGG | + | chr8.1:83397951-83397970 | MS.gene36983:CDS | 35.0% |
| ! | GTTTGAGACTCTTATTAGAG+CGG | + | chr8.1:83399882-83399901 | MS.gene36983:intron | 35.0% |
| ! | TAACTGGATATTTGCTAGCT+GGG | - | chr8.1:83400982-83401001 | None:intergenic | 35.0% |
| ! | TTCTTCTAGAAAGCATGCAT+GGG | + | chr8.1:83400252-83400271 | MS.gene36983:CDS | 35.0% |
| ! | TTTCTTCTAGAAAGCATGCA+TGG | + | chr8.1:83400251-83400270 | MS.gene36983:CDS | 35.0% |
| !! | TTGAGTGCTGAAATAGCTTA+TGG | - | chr8.1:83400896-83400915 | None:intergenic | 35.0% |
| !!! | ATGCATGGGTTATTTTTGCT+GGG | + | chr8.1:83400266-83400285 | MS.gene36983:CDS | 35.0% |
| !!! | TTTTTTAAAGGGCTACCGTT+AGG | + | chr8.1:83399161-83399180 | MS.gene36983:intron | 35.0% |
| AGCAGTTCTGTCTCTATCTA+TGG | + | chr8.1:83398018-83398037 | MS.gene36983:CDS | 40.0% | |
| AGGGAGCAATGAACGAAATA+CGG | + | chr8.1:83399248-83399267 | MS.gene36983:intron | 40.0% | |
| AGTGGATCAACTAGAATGAG+TGG | + | chr8.1:83397868-83397887 | MS.gene36983:CDS | 40.0% | |
| CTCAAGACTATTCCAATTGG+TGG | - | chr8.1:83399477-83399496 | None:intergenic | 40.0% | |
| CTGCTGTGCATGATGTTATA+TGG | + | chr8.1:83401333-83401352 | MS.gene36983:CDS | 40.0% | |
| CTTTGGGCAGATTTCTTGTT+GGG | + | chr8.1:83400149-83400168 | MS.gene36983:intron | 40.0% | |
| GCACTCAAGACTATTCCAAT+TGG | - | chr8.1:83399480-83399499 | None:intergenic | 40.0% | |
| GGCTTGCAAAAATTTGGAAG+AGG | - | chr8.1:83401239-83401258 | None:intergenic | 40.0% | |
| GTAACCAATCTAAATCGCAC+TGG | + | chr8.1:83401200-83401219 | MS.gene36983:CDS | 40.0% | |
| TCATTGCTGCAACTACTCAT+TGG | + | chr8.1:83400196-83400215 | MS.gene36983:CDS | 40.0% | |
| TCCATAGGACCTACTCAAAA+CGG | - | chr8.1:83399554-83399573 | None:intergenic | 40.0% | |
| TCTTGGCATCACTGATGTAT+AGG | + | chr8.1:83400476-83400495 | MS.gene36983:intron | 40.0% | |
| TCTTTGGGCAGATTTCTTGT+TGG | + | chr8.1:83400148-83400167 | MS.gene36983:intron | 40.0% | |
| TGGCACGTCAAGATTTCTTA+GGG | + | chr8.1:83400216-83400235 | MS.gene36983:CDS | 40.0% | |
| TTGGCACGTCAAGATTTCTT+AGG | + | chr8.1:83400215-83400234 | MS.gene36983:CDS | 40.0% | |
| TTTGGGCAGATTTCTTGTTG+GGG | + | chr8.1:83400150-83400169 | MS.gene36983:intron | 40.0% | |
| ! | ACCATAAAAAGTGCAGACCA+TGG | + | chr8.1:83398869-83398888 | MS.gene36983:intron | 40.0% |
| ! | CATTGCCATGAACCTCTTTT+CGG | - | chr8.1:83398419-83398438 | None:intergenic | 40.0% |
| ! | GACCACTTTCAAGTGATACT+TGG | - | chr8.1:83400072-83400091 | None:intergenic | 40.0% |
| !! | TATAAGGGTACTCCACCAAT+TGG | + | chr8.1:83399462-83399481 | MS.gene36983:intron | 40.0% |
| !! | TTTGAGTCACCGTTTTGAGT+AGG | + | chr8.1:83399542-83399561 | MS.gene36983:intron | 40.0% |
| !!! | CATGCATGGGTTATTTTTGC+TGG | + | chr8.1:83400265-83400284 | MS.gene36983:CDS | 40.0% |
| !!! | GTTTTGGAGAGAGAAAAGGA+AGG | + | chr8.1:83398195-83398214 | MS.gene36983:intron | 40.0% |
| !!! | TGCATGGGTTATTTTTGCTG+GGG | + | chr8.1:83400267-83400286 | MS.gene36983:CDS | 40.0% |
| AACATCATGCACAGCAGATG+TGG | - | chr8.1:83401330-83401349 | None:intergenic | 45.0% | |
| AAGAACTCGAGCTCGATTCT+TGG | + | chr8.1:83400459-83400478 | MS.gene36983:intron | 45.0% | |
| AGGCTATTGAGATGGCAACA+TGG | - | chr8.1:83401280-83401299 | None:intergenic | 45.0% | |
| GAGTAGTTGCAGCAATGAGT+GGG | - | chr8.1:83400194-83400213 | None:intergenic | 45.0% | |
| TGAGTAGTTGCAGCAATGAG+TGG | - | chr8.1:83400195-83400214 | None:intergenic | 45.0% | |
| TGGCATCACTGATGTATAGG+AGG | + | chr8.1:83400479-83400498 | MS.gene36983:intron | 45.0% | |
| ! | AGCTCGAGTTCTTTTCTTGG+TGG | - | chr8.1:83400452-83400471 | None:intergenic | 45.0% |
| ! | GCTTATGCATTGATGAGTGC+TGG | + | chr8.1:83401161-83401180 | MS.gene36983:CDS | 45.0% |
| ! | GTTTCTTGGTGACCGAAAAG+AGG | + | chr8.1:83398404-83398423 | MS.gene36983:intron | 45.0% |
| ! | TCGAGCTCGAGTTCTTTTCT+TGG | - | chr8.1:83400455-83400474 | None:intergenic | 45.0% |
| ! | TGACTTTTCACACAACGCCA+TGG | - | chr8.1:83398889-83398908 | None:intergenic | 45.0% |
| ! | TGTTAGCTCTTAGGGTTGTG+TGG | + | chr8.1:83398817-83398836 | MS.gene36983:intron | 45.0% |
| !! | ACCGTTTTGAGTAGGTCCTA+TGG | + | chr8.1:83399550-83399569 | MS.gene36983:intron | 45.0% |
| !! | CGAACTTGTTTGGCGTGTTT+TGG | + | chr8.1:83399075-83399094 | MS.gene36983:intron | 45.0% |
| !! | GCCATGGTCTGCACTTTTTA+TGG | - | chr8.1:83398873-83398892 | None:intergenic | 45.0% |
| !!! | GGTTATTTTTGCTGGGGATC+AGG | + | chr8.1:83400273-83400292 | MS.gene36983:CDS | 45.0% |
| !! | ATTAAAAAAAAAAAGTTAAA+TGG | + | chr8.1:83398609-83398628 | MS.gene36983:intron | 5.0% |
| !!! | AAAAAAAAAAAGTTTTTTTA+GGG | + | chr8.1:83398732-83398751 | MS.gene36983:intron | 5.0% |
| !!! | ATTTTTTTTTTTAAAAATTG+TGG | + | chr8.1:83398444-83398463 | MS.gene36983:intron | 5.0% |
| AAAGGGCTACCGTTAGGCAT+TGG | + | chr8.1:83399167-83399186 | MS.gene36983:intron | 50.0% | |
| AGAATGAGTGGTCCTCTCGT+CGG | + | chr8.1:83397880-83397899 | MS.gene36983:CDS | 50.0% | |
| GGTGACCGAAAAGAGGTTCA+TGG | + | chr8.1:83398411-83398430 | MS.gene36983:intron | 50.0% | |
| !! | ACAGCAGCTTTAGAGTGCAG+TGG | + | chr8.1:83397850-83397869 | MS.gene36983:CDS | 50.0% |
| ! | AGTGCTGGATCAGCTGCATC+TGG | + | chr8.1:83401176-83401195 | MS.gene36983:CDS | 55.0% |
| !! | CAGCAATGAGTGGGCTGCAA+CGG | - | chr8.1:83400185-83400204 | None:intergenic | 55.0% |
| AGTGGTCCTCTCGTCGGAGA+CGG | + | chr8.1:83397886-83397905 | MS.gene36983:CDS | 60.0% | |
| GCAGCATCACCTCCGTTCTC+CGG | - | chr8.1:83397930-83397949 | None:intergenic | 60.0% | |
| GCGAAAAGACCAGTCGACGC+CGG | + | chr8.1:83397908-83397927 | MS.gene36983:CDS | 60.0% | |
| ! | TTTTCGCCGTCTCCGACGAG+AGG | - | chr8.1:83397895-83397914 | None:intergenic | 60.0% |
| GACCAGTCGACGCCGGAGAA+CGG | + | chr8.1:83397915-83397934 | MS.gene36983:CDS | 65.0% | |
| CAGTCGACGCCGGAGAACGG+AGG | + | chr8.1:83397918-83397937 | MS.gene36983:CDS | 70.0% | |
| !! | CTCCGTTCTCCGGCGTCGAC+TGG | - | chr8.1:83397920-83397939 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 83397832 | 83401370 | 83397832 | ID=MS.gene36983 |
| chr8.1 | mRNA | 83397832 | 83401370 | 83397832 | ID=MS.gene36983.t1;Parent=MS.gene36983 |
| chr8.1 | exon | 83397832 | 83398088 | 83397832 | ID=MS.gene36983.t1.exon1;Parent=MS.gene36983.t1 |
| chr8.1 | CDS | 83397832 | 83398088 | 83397832 | ID=cds.MS.gene36983.t1;Parent=MS.gene36983.t1 |
| chr8.1 | exon | 83400159 | 83400294 | 83400159 | ID=MS.gene36983.t1.exon2;Parent=MS.gene36983.t1 |
| chr8.1 | CDS | 83400159 | 83400294 | 83400159 | ID=cds.MS.gene36983.t1;Parent=MS.gene36983.t1 |
| chr8.1 | exon | 83401155 | 83401370 | 83401155 | ID=MS.gene36983.t1.exon3;Parent=MS.gene36983.t1 |
| chr8.1 | CDS | 83401155 | 83401370 | 83401155 | ID=cds.MS.gene36983.t1;Parent=MS.gene36983.t1 |
| Gene Sequence |
| Protein sequence |
