AlfalfaGEDB | MS.gene37129

M. sativa cultivar XinJiangDaYe / MS.gene37129

KEGG: K20242
GO: -
PFAM: PF00566.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37129.t1	XP_013451196.1	96.5	367	13	0	1	367	1	367	1.80E-200	708.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37129.t1	Q96CN4	38.9	285	165	5	67	348	95	373	7.6e-51	202.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37129.t1	A0A072U794	96.5	367	13	0	1	367	1	367	1.3e-200	708.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene036217	MS.gene37129	PPI
MS.gene37129	MS.gene37119	PPI
MS.gene37129	MS.gene37124	PPI
MS.gene37129	MS.gene32044	PPI
MS.gene37129	MS.gene004666	PPI
MS.gene37129	MS.gene018204	PPI
MS.gene37133	MS.gene37129	PPI
MS.gene37135	MS.gene37129	PPI
MS.gene39977	MS.gene37129	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37129.t1	MTR_6g016590	96.458	367	13	0	1	367	1	367	0.0	726
MS.gene37129.t1	MTR_5g098140	34.510	255	156	5	79	327	105	354	8.50e-40	145
MS.gene37129.t1	MTR_1g067150	33.482	224	124	5	84	291	608	822	7.40e-30	121
MS.gene37129.t1	MTR_1g116310	31.915	235	126	5	84	291	242	469	4.21e-28	116
MS.gene37129.t1	MTR_2g099380	26.909	275	146	8	86	313	150	416	2.67e-18	86.3
MS.gene37129.t1	MTR_4g068180	27.007	274	145	8	87	313	158	423	1.47e-15	78.2
MS.gene37129.t1	MTR_3g083840	24.901	253	167	8	98	332	183	430	1.01e-12	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37129.t1	AT3G02460	82.286	350	59	3	1	348	1	349	0.0	580
MS.gene37129.t1	AT5G15930	78.814	354	73	1	1	354	1	352	0.0	577
MS.gene37129.t1	AT3G02460	82.831	332	56	1	1	331	1	332	0.0	560
MS.gene37129.t1	AT3G02460	77.429	350	56	4	1	348	1	329	0.0	536
MS.gene37129.t1	AT3G02460	81.605	299	54	1	1	298	1	299	3.21e-178	497
MS.gene37129.t1	AT3G02460	80.212	283	55	1	1	282	1	283	7.54e-166	465
MS.gene37129.t1	AT3G07890	33.725	255	158	5	79	327	108	357	2.26e-37	139
MS.gene37129.t1	AT3G07890	33.725	255	158	5	79	327	108	357	2.26e-37	139
MS.gene37129.t1	AT3G07890	33.725	255	158	5	79	327	108	357	2.26e-37	139
MS.gene37129.t1	AT3G07890	33.725	255	158	5	79	327	108	357	2.26e-37	139

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Find 105 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAGTTATGAACCAC+TGG	0.556277	6.2:+12057633	None:intergenic
AAAATGGAGGAAGATGATTG+GGG	0.635829	6.2:-12059003	MS.gene37129:CDS
AAAGACATGGACCTGGGCAA+CGG	0.617682	6.2:-12058591	MS.gene37129:CDS
AAAGTACCGCCATGATGACT+TGG	0.557996	6.2:-12057436	MS.gene37129:intron
AACGCTCTTGGTGAAGGAAC+TGG	0.418783	6.2:+12059239	None:intergenic
AACGGAAAGATGAGTCGATC+CGG	0.513702	6.2:-12056247	MS.gene37129:CDS
AAGAGCCAAATGGAATGGAA+AGG	0.619876	6.2:+12057604	None:intergenic
AAGAGGTATTGCTGGACAAG+AGG	0.608342	6.2:+12057743	None:intergenic
AAGGAATTCCTGATTGTTTA+AGG	0.138057	6.2:-12058914	MS.gene37129:CDS
AATTAAAATTCCAGGGAATG+GGG	0.550698	6.2:-12058440	MS.gene37129:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACAGTTATGAACCAC+TGG	+	chr6.2:12057846-12057865	None:intergenic	30.0%
AAACTCTTCCTTATCTGATA+AGG	+	chr6.2:12059178-12059197	None:intergenic	30.0%
AACAAACAGAAAAAAGTGAC+GGG	+	chr6.2:12056985-12057004	None:intergenic	30.0%
AAGGAATTCCTGATTGTTTA+AGG	-	chr6.2:12056562-12056581	MS.gene37129:intron	30.0%
AATGACATTCTTATCTTTCC+AGG	-	chr6.2:12057980-12057999	MS.gene37129:intron	30.0%
AATTAAAATTCCAGGGAATG+GGG	-	chr6.2:12057036-12057055	MS.gene37129:intron	30.0%
ACAAACTTATCAACGTATCT+TGG	+	chr6.2:12057384-12057403	None:intergenic	30.0%
AGGAATTCCTGATTGTTTAA+GGG	-	chr6.2:12056563-12056582	MS.gene37129:intron	30.0%
ATGACATTCTTATCTTTCCA+GGG	-	chr6.2:12057981-12058000	MS.gene37129:intron	30.0%
ATTGTATCCCTATCATACTA+TGG	+	chr6.2:12057316-12057335	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	12056201	12059297	12056201	ID=MS.gene37129
chr6.2	mRNA	12056201	12059297	12056201	ID=MS.gene37129.t1;Parent=MS.gene37129
chr6.2	exon	12059155	12059297	12059155	ID=MS.gene37129.t1.exon1;Parent=MS.gene37129.t1
chr6.2	CDS	12059155	12059297	12059155	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12058848	12059049	12058848	ID=MS.gene37129.t1.exon2;Parent=MS.gene37129.t1
chr6.2	CDS	12058848	12059049	12058848	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12058531	12058701	12058531	ID=MS.gene37129.t1.exon3;Parent=MS.gene37129.t1
chr6.2	CDS	12058531	12058701	12058531	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12058332	12058448	12058332	ID=MS.gene37129.t1.exon4;Parent=MS.gene37129.t1
chr6.2	CDS	12058332	12058448	12058332	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12057577	12057774	12057577	ID=MS.gene37129.t1.exon5;Parent=MS.gene37129.t1
chr6.2	CDS	12057577	12057774	12057577	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12057437	12057496	12057437	ID=MS.gene37129.t1.exon6;Parent=MS.gene37129.t1
chr6.2	CDS	12057437	12057496	12057437	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12057257	12057355	12057257	ID=MS.gene37129.t1.exon7;Parent=MS.gene37129.t1
chr6.2	CDS	12057257	12057355	12057257	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1
chr6.2	exon	12056201	12056314	12056201	ID=MS.gene37129.t1.exon8;Parent=MS.gene37129.t1
chr6.2	CDS	12056201	12056314	12056201	ID=cds.MS.gene37129.t1;Parent=MS.gene37129.t1

Gene Sequence

>MS.gene37129

ATGGAAAAGAAAAGAAGTGATGACTATGAACCAAGTCCAGTTCCTTCACCAAGAGCGTTGGATAGGTTCGGGTTTATAAAACAGGATGCTAACACTTCTGAGGGTGCAGCTAAGACGAGTAGATCAGCATATATGAGAAGTATGTTGTTTTTCTCCTGCTCATTATGCGTTTCTCTGTTTTTAAGCATGAATGAGCATTGAAATATGGCCGATGATTTTTAACTTCCTTGTCGTCTATCTTTTGTCAGAATTAAGGAGGGGAGAAGGGTTAGAAAATGGAGGAAGATGATTGGGGTTGGTGGGAGTGATTGGAAGCATTACCTAAGGAGAAAACCCAATGTTGTTAAAAGGCGCATAAGGAAAGGAATTCCTGATTGTTTAAGGGGCCTTGTTTGGCAGTTAATATCTGGAAGCCGAGACCTATTGCTCATGAATCCTGGAGTTTACGAGGTAATCAAGTTAACTTATTCAGACAAAAATTGTGATTTATTTGTTATATATCTTCCTTGTTATTTTTGACAATGTCGTGAATTTTTTATTCGCCAACTGTTCCACATTTGTCGGTTTGCATTGACAAGTCATGATACTTGTTGCAGCAATTGGTGATATACGAGACATCAGCCTCTGAACTGGATATAATTCGAGACATTTCTCGGACTTTCCCTTCACATGTATTCTTCCAGCAAAGACATGGACCTGGGCAACGGTCCCTCTACAATGTTCTAAAAGCTTACTCGGTATTTGACAGAGAAGTAGGATATGTTCAGGTTCTACTCAGAAACCCGTCACTTTTTTCTGTTTGTTACAAAGTAATTCATAATATTGTATATTGATCAATTAAAATTCCAGGGAATGGGGTTTTTAGCTGGTCTTTTGCTTCTTTATATGAGCGAGGAGGATGCATTTTGGTTATTGGTGGCATTACTTAAAGGAGCTGTTCATGCCCCAATGGAGGGACTCTATCTGGTAACTATTCTGCTCCTTGAATTCATTTATTTTGATTGTTGATATTGTCAATGTATTATGTTACCCCTTTCTCTTATAATATATGTTTTGTACGAGTAAATATTTGGAAATATTTTAAATTGCATGCATGGTGTGGCCTAAGAAGCCCATAGTATGATAGGGATACAATGCGGCACAAATACAGGAAATTTTAAAAAATCAAGATACGACACAGCCAAGATACGTTGATAAGTTTGTGAATAGACGTTCACATTGCAAATTCCTTATTAATACTTTTTTTTACGCACTTATTAATGCATAAACGTATCAAAAGTCAATATATGATGATTACAATTTAGAAAGATGTACTTGTTAATATTGAAAGTAGGGATAGCTTGTGTTTGCTTTCAAAATTGCAAGTTTTTCGCCACATGGTAACATGAAGCTTCTAACTGTACGATAATTCTTGATACTTTGACAAATTTGAAATATCTCTGCTTCATAATTGATGACTATCATTTGCTTTTAGATGAAAACAATCCTTTTTCATCACGATTATTGATATATTTTGACTGCAGGCAGGACTGCCTCTTGTCCAGCAATACCTCTTTCAATTTGAACGCTTGGTGAGGGAGCATCTACCGAAGTTAGGAGAACATTTTACCCAAGAAATGATAAATCCTAGCATGTATGCAAGCCAGTGGTTCATAACTGTATTTTCGTATTCCTTTCCATTCCATTTGGCTCTTCGAATCTGGGATGTCTTTCTCTATGAGGTTAGCCACAGTTTCCCCAAGTTCCATTTGTAGCGTACAAAAAGTATTCGATAATAACAATGACATTCTTATCTTTCCAGGGTGTTAAAATTGTTTTTAAAGTTGGCTTGGCCCTATTAAAGTACCGCCATGATGACTTGGTAAGTATCACGTGATCTTGTGTTTTTTTACGACTCACAAGCAAATCTCTACTCATTGTTTGTTTTCTGTTTGCTTATCAGGTGAAGTTACCTTTTGAGAAACTGATACATGCCTTGAAAAACTTCCCTGAGGATGCAATGAATCCTGACACGTTATTGCCGCTGGCTTATTCCATCAAGGTTCTCTCCCTTCCGCTGCGCTTCAACTTATTTCCATTTGCCTTTTGTTTGTCAACATCTAAGTTTTAAAATTTAATTTTGCACTGTTGGTTACCTTTGAAGTCTTATTTGTTGATTTGTTTGCTCGGATGATGATAATAATCATAATATTGATACAAGCTCACATGTTTCTCTTGCTCTAAAATATCAAGCTATGTTGAATTTGTATGTAGAAAAACATTTGTCATGATATAGTTTTTGAGCCTTTTCAGTGGTAGTATGAGTGAGAAATATATAGATAAAGGATTTGCAAGGATTCCAAAAGTAGGAAAGTAGAAACCAAACAAACTGTAATTTTAGAAGAGATATTAAATTTTTTGCTTATTCGTGTGAAGAGACACAAAAGATTCAAAGTCCATTAGCCTATCTGATTGATTATACTGAATTGTATCTTATGCGTATTTTTTACCCTGCATTCTTTTATTCAGTCCCTATTCCTTCTCAATCTTTTTACTGTATCAGTTACCAAAGGGTTATGTCAATCTGTGGACACAGATTGAGGAAATACATGTAAAATAATGGGAAAAAACTCATGTCTATTGCTACATCCTAGGACTGTATATAAAAGAAATTACGATAAATGTTGTTGCAATTATTATCAGGAACTTATTGGTTGAGATTGCAGTCTATCATCAAGGTAGTAGAGTGCTCTAGATTCTTTCACACAACCAATCGTCTTTACAAGACTTTCCCCAGGAATGGCTGAAAGAGAGTCATCTGCAATCTTAATTTTGCACATGACTAATAAAATAGTTATATCATGCAAGTTGATGAGTATGTTTTCATATCAATCTGATTCTGTCTCTCCCATCTCAAATGCAATACGAAGGGAACAATAGATACAATATTTCTCCAAGTAACAATTCTTACTATTATGCATCTAAATTTTGTTTTCCTTATCAGATAAGGAAGAGTTTAGAGGAACTGAAACAAGAGTATGAAAAGAAGAACGGAAAGATGAGTCGATCCGGAGAACTTTCTGAAAAGCCAATTCTTCCAAGCATCCAGACCAATTGA

Protein sequence

>MS.gene37129.t1

MEKKRSDDYEPSPVPSPRALDRFGFIKQDANTSEGAAKTSRSAYMRSIIKEGRRVRKWRKMIGVGGSDWKHYLRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDREVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFERLVREHLPKLGEHFTQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYRHDDLVKLPFEKLIHALKNFPEDAMNPDTLLPLAYSIKIRKSLEELKQEYEKKNGKMSRSGELSEKPILPSIQTN