Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37253.t1 | XP_024629520.1 | 80.2 | 303 | 23 | 1 | 1 | 303 | 1 | 266 | 6.70E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37253.t1 | A0A2K3M0R9 | 61.1 | 303 | 73 | 3 | 2 | 303 | 71 | 329 | 2.4e-80 | 308.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05414 | MS.gene37253 | 0.808842 | 2.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37253.t1 | MTR_4g078510 | 91.892 | 148 | 12 | 0 | 143 | 290 | 35 | 182 | 3.85e-85 | 255 |
| MS.gene37253.t1 | MTR_2g044850 | 86.747 | 83 | 11 | 0 | 221 | 303 | 1 | 83 | 1.53e-35 | 123 |
| MS.gene37253.t1 | MTR_8g467480 | 86.747 | 83 | 11 | 0 | 221 | 303 | 1 | 83 | 3.52e-35 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTCAAATATCTTTA+AGG | 0.125204 | 1.2:+40422442 | MS.gene37253:CDS |
| ATCATCATTGTTTGCATTAG+AGG | 0.184290 | 1.2:-40422684 | None:intergenic |
| GGTTGGTGTTAGTGGATTTC+AGG | 0.188067 | 1.2:+40421913 | MS.gene37253:CDS |
| GGAATCAATTAATACATTAT+TGG | 0.196503 | 1.2:+40421164 | MS.gene37253:CDS |
| TGCCAGATGACTTGACTATT+TGG | 0.234675 | 1.2:+40422336 | MS.gene37253:CDS |
| TACTGCTGGTTCTATATCTA+TGG | 0.241436 | 1.2:+40421264 | MS.gene37253:CDS |
| GAAGAGAAAAGCAGAGCTTT+TGG | 0.280604 | 1.2:+40422253 | MS.gene37253:CDS |
| GTTAGTGGATTTCAGGCTTC+AGG | 0.287907 | 1.2:+40421920 | MS.gene37253:CDS |
| GAATCAATTAATACATTATT+GGG | 0.289750 | 1.2:+40421165 | MS.gene37253:CDS |
| AAAGGAAAACTATATGGTTT+AGG | 0.310844 | 1.2:+40422383 | MS.gene37253:CDS |
| TGGAACAAGAGCTCTTAAAA+TGG | 0.322348 | 1.2:+40422474 | MS.gene37253:CDS |
| TGTATTAATTGATTCCATAT+TGG | 0.323717 | 1.2:-40421157 | None:intergenic |
| CGCTGGTGTTTGTGCAGCCT+TGG | 0.336144 | 1.2:+40421884 | MS.gene37253:CDS |
| CTATATGGTTTAGGTTCTAT+AGG | 0.343666 | 1.2:+40422392 | MS.gene37253:CDS |
| GAGGCTTCAGCAACATCATT+TGG | 0.358136 | 1.2:-40422665 | None:intergenic |
| TCATTTGGTTCATCTTGAAT+AGG | 0.364266 | 1.2:-40422650 | None:intergenic |
| GATGTACTTTGGCCTGTATT+CGG | 0.382125 | 1.2:-40421128 | None:intergenic |
| AGTACATCTCTGAGCCAATA+TGG | 0.383331 | 1.2:+40421143 | MS.gene37253:CDS |
| AATGCTTCGAAGTATACTAT+TGG | 0.390634 | 1.2:+40422419 | MS.gene37253:CDS |
| TGGATTTCAGGCTTCAGGTT+TGG | 0.396135 | 1.2:+40421925 | MS.gene37253:CDS |
| GGTGTCGCACAAGCAAAGTT+TGG | 0.399282 | 1.2:-40422629 | None:intergenic |
| GGACTGATTTGGCCAGCTGC+TGG | 0.414131 | 1.2:+40421846 | MS.gene37253:CDS |
| AAAATGTAGGAGAATGAAAC+AGG | 0.438908 | 1.2:+40421378 | MS.gene37253:intron |
| ACATTCGAAAGGATAAGAAA+TGG | 0.457529 | 1.2:+40421439 | MS.gene37253:CDS |
| ATGCAAATAATTCCGAATAC+AGG | 0.477271 | 1.2:+40421116 | MS.gene37253:CDS |
| TTCCAAATAGTCAAGTCATC+TGG | 0.478583 | 1.2:-40422338 | None:intergenic |
| GCTCTTAAAATGGAAAGAAA+AGG | 0.497086 | 1.2:+40422484 | MS.gene37253:CDS |
| TATAGAACCAGCAGTATGAA+TGG | 0.497172 | 1.2:-40421257 | None:intergenic |
| ATTGGCTCAGAGATGTACTT+TGG | 0.497630 | 1.2:-40421139 | None:intergenic |
| GCAAATACCTCCTCCACTGC+AGG | 0.498509 | 1.2:-40421408 | None:intergenic |
| TTCTATATCTATGGGTGAGA+AGG | 0.502165 | 1.2:+40421273 | MS.gene37253:CDS |
| TCAGGCTTCAGGTTTGGCAG+TGG | 0.509438 | 1.2:+40421931 | MS.gene37253:CDS |
| ATTTCTTATCCTTTCGAATG+TGG | 0.515569 | 1.2:-40421437 | None:intergenic |
| GGTAGCTCCATTCATACTGC+TGG | 0.517845 | 1.2:+40421250 | MS.gene37253:CDS |
| AGCCACGCCTGCAGTGGAGG+AGG | 0.522287 | 1.2:+40421401 | MS.gene37253:CDS |
| AGGAGCCACGCCTGCAGTGG+AGG | 0.522444 | 1.2:+40421398 | MS.gene37253:CDS |
| CATTCGAAAGGATAAGAAAT+GGG | 0.523660 | 1.2:+40421440 | MS.gene37253:CDS |
| TACCTCCTCCACTGCAGGCG+TGG | 0.527940 | 1.2:-40421403 | None:intergenic |
| CAAGCAAAGTTTGGAGGCAA+TGG | 0.532892 | 1.2:-40422620 | None:intergenic |
| AGTCATCTGGCATATTATGA+TGG | 0.535927 | 1.2:-40422325 | None:intergenic |
| AACAGGAGCCACGCCTGCAG+TGG | 0.538426 | 1.2:+40421395 | MS.gene37253:CDS |
| TGCTCTTTGCCACATTCGAA+AGG | 0.544773 | 1.2:+40421428 | MS.gene37253:CDS |
| GCAAATCGTGCTTCAACTCA+AGG | 0.546016 | 1.2:+40421229 | MS.gene37253:CDS |
| ACTGCTGGTTCTATATCTAT+GGG | 0.548230 | 1.2:+40421265 | MS.gene37253:CDS |
| GGGTGAGAAGGGACGTAGGA+TGG | 0.568413 | 1.2:+40421285 | MS.gene37253:CDS |
| ATCTATGTCTCAAAATCAAG+AGG | 0.574405 | 1.2:+40422280 | MS.gene37253:CDS |
| TCTATATCTATGGGTGAGAA+GGG | 0.583739 | 1.2:+40421274 | MS.gene37253:CDS |
| GAGGTATGATGTGGCAAGAG+AGG | 0.586967 | 1.2:+40421086 | None:intergenic |
| ATGTCTCAAAATCAAGAGGA+AGG | 0.589667 | 1.2:+40422284 | MS.gene37253:CDS |
| AGATGACTTGACTATTTGGA+AGG | 0.595353 | 1.2:+40422340 | MS.gene37253:CDS |
| GTCGCACAAGCAAAGTTTGG+AGG | 0.597843 | 1.2:-40422626 | None:intergenic |
| CTAGATTCAGAGGTATGATG+TGG | 0.651801 | 1.2:+40421077 | None:intergenic |
| CTATGGGTGAGAAGGGACGT+AGG | 0.656674 | 1.2:+40421281 | MS.gene37253:CDS |
| TCTCAAAATCAAGAGGAAGG+AGG | 0.661677 | 1.2:+40422287 | MS.gene37253:CDS |
| TGGAAGGAAGTAGCTCCCAA+AGG | 0.672251 | 1.2:+40422356 | MS.gene37253:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTACATATTTTAAT+TGG | + | chr1.2:40422182-40422201 | MS.gene37253:intron | 10.0% |
| !! | AGTTATGATAATATTGATAT+GGG | + | chr1.2:40421528-40421547 | MS.gene37253:intron | 15.0% |
| !! | ATAAAAAAAAAACCTTATCA+AGG | - | chr1.2:40422062-40422081 | None:intergenic | 15.0% |
| !! | GAATCAATTAATACATTATT+GGG | + | chr1.2:40421165-40421184 | MS.gene37253:CDS | 15.0% |
| !! | TAGTTATGATAATATTGATA+TGG | + | chr1.2:40421527-40421546 | MS.gene37253:intron | 15.0% |
| !!! | AAATTTTAAGAATTTATCAG+TGG | + | chr1.2:40421198-40421217 | MS.gene37253:CDS | 15.0% |
| !!! | TTTTTAATAATTAGATTGCT+AGG | + | chr1.2:40421593-40421612 | MS.gene37253:intron | 15.0% |
| !! | GGAATCAATTAATACATTAT+TGG | + | chr1.2:40421164-40421183 | MS.gene37253:CDS | 20.0% |
| !! | GTAAAATCATAGATGAATTA+TGG | - | chr1.2:40422163-40422182 | None:intergenic | 20.0% |
| !! | TAACATAATTCAAAATTGCA+GGG | + | chr1.2:40422221-40422240 | MS.gene37253:intron | 20.0% |
| !!! | AAATTTTCTCATTGAAGTTA+TGG | + | chr1.2:40421353-40421372 | MS.gene37253:intron | 20.0% |
| !!! | AAGGTTTTTTTTTTATTGAG+TGG | + | chr1.2:40422066-40422085 | MS.gene37253:intron | 20.0% |
| !!! | TATCTTTAAGGAAAAAAACA+TGG | + | chr1.2:40422454-40422473 | MS.gene37253:CDS | 20.0% |
| !!! | TGTATTAATTGATTCCATAT+TGG | - | chr1.2:40421160-40421179 | None:intergenic | 20.0% |
| !!! | TTAATTTGTGAACAACATAT+TGG | + | chr1.2:40421330-40421349 | MS.gene37253:intron | 20.0% |
| ! | AAAGGAAAACTATATGGTTT+AGG | + | chr1.2:40422383-40422402 | MS.gene37253:CDS | 25.0% |
| ! | CTAACATAATTCAAAATTGC+AGG | + | chr1.2:40422220-40422239 | MS.gene37253:intron | 25.0% |
| ! | GGTAAAAAAGGAAAACTATA+TGG | + | chr1.2:40422377-40422396 | MS.gene37253:CDS | 25.0% |
| ! | TAATAATTAGATTGCTAGGT+GGG | + | chr1.2:40421597-40421616 | MS.gene37253:intron | 25.0% |
| ! | TATGATAATATTGATATGGG+AGG | + | chr1.2:40421531-40421550 | MS.gene37253:intron | 25.0% |
| ! | TGAAGTTATGGAAAAAATGT+AGG | + | chr1.2:40421365-40421384 | MS.gene37253:intron | 25.0% |
| ! | TTAATAATTAGATTGCTAGG+TGG | + | chr1.2:40421596-40421615 | MS.gene37253:intron | 25.0% |
| ! | TTCATGCTCAAATATCTTTA+AGG | + | chr1.2:40422442-40422461 | MS.gene37253:CDS | 25.0% |
| !! | TGATTTGGAAGATTAGAAAT+GGG | + | chr1.2:40421566-40421585 | MS.gene37253:intron | 25.0% |
| !!! | AGTTTTCCTTTTTTACCTTT+GGG | - | chr1.2:40422374-40422393 | None:intergenic | 25.0% |
| !!! | TAGTTTTCCTTTTTTACCTT+TGG | - | chr1.2:40422375-40422394 | None:intergenic | 25.0% |
| AAAATGTAGGAGAATGAAAC+AGG | + | chr1.2:40421378-40421397 | MS.gene37253:intron | 30.0% | |
| AACCTTATCAAGGAAAACAA+AGG | - | chr1.2:40422052-40422071 | None:intergenic | 30.0% | |
| AATGCTTCGAAGTATACTAT+TGG | + | chr1.2:40422419-40422438 | MS.gene37253:CDS | 30.0% | |
| ACATTCGAAAGGATAAGAAA+TGG | + | chr1.2:40421439-40421458 | MS.gene37253:CDS | 30.0% | |
| ACCTTATCAAGGAAAACAAA+GGG | - | chr1.2:40422051-40422070 | None:intergenic | 30.0% | |
| ATCATCATTGTTTGCATTAG+AGG | - | chr1.2:40422687-40422706 | None:intergenic | 30.0% | |
| ATCTATGTCTCAAAATCAAG+AGG | + | chr1.2:40422280-40422299 | MS.gene37253:CDS | 30.0% | |
| ATGCAAATAATTCCGAATAC+AGG | + | chr1.2:40421116-40421135 | MS.gene37253:CDS | 30.0% | |
| ATTTCTTATCCTTTCGAATG+TGG | - | chr1.2:40421440-40421459 | None:intergenic | 30.0% | |
| CATTCGAAAGGATAAGAAAT+GGG | + | chr1.2:40421440-40421459 | MS.gene37253:CDS | 30.0% | |
| CCAAGAGCAAAAACAAAAAT+TGG | + | chr1.2:40422529-40422548 | MS.gene37253:CDS | 30.0% | |
| GCTCTTAAAATGGAAAGAAA+AGG | + | chr1.2:40422484-40422503 | MS.gene37253:CDS | 30.0% | |
| ! | CTATATGGTTTAGGTTCTAT+AGG | + | chr1.2:40422392-40422411 | MS.gene37253:CDS | 30.0% |
| ! | GTGATTTGGAAGATTAGAAA+TGG | + | chr1.2:40421565-40421584 | MS.gene37253:intron | 30.0% |
| ! | TCATTTGGTTCATCTTGAAT+AGG | - | chr1.2:40422653-40422672 | None:intergenic | 30.0% |
| !! | GTTTTTACTGTTTTTCTGCA+GGG | + | chr1.2:40421825-40421844 | MS.gene37253:intron | 30.0% |
| !! | TTCTTTGGGAGTTTTTCTTT+GGG | + | chr1.2:40422005-40422024 | MS.gene37253:intron | 30.0% |
| !! | TTTCTTTGGGAGTTTTTCTT+TGG | + | chr1.2:40422004-40422023 | MS.gene37253:intron | 30.0% |
| !!! | CCAATTTTTGTTTTTGCTCT+TGG | - | chr1.2:40422532-40422551 | None:intergenic | 30.0% |
| AAACTCCCAAAGAAACCAAA+CGG | - | chr1.2:40421999-40422018 | None:intergenic | 35.0% | |
| AGATGACTTGACTATTTGGA+AGG | + | chr1.2:40422340-40422359 | MS.gene37253:CDS | 35.0% | |
| AGTCATCTGGCATATTATGA+TGG | - | chr1.2:40422328-40422347 | None:intergenic | 35.0% | |
| ATGTCTCAAAATCAAGAGGA+AGG | + | chr1.2:40422284-40422303 | MS.gene37253:CDS | 35.0% | |
| CCTTATCAAGGAAAACAAAG+GGG | - | chr1.2:40422050-40422069 | None:intergenic | 35.0% | |
| TAACACCAACCAAAAAACCA+AGG | - | chr1.2:40421904-40421923 | None:intergenic | 35.0% | |
| TATAGAACCAGCAGTATGAA+TGG | - | chr1.2:40421260-40421279 | None:intergenic | 35.0% | |
| TCATAGATGAATTATGGTCG+TGG | - | chr1.2:40422157-40422176 | None:intergenic | 35.0% | |
| TCTATATCTATGGGTGAGAA+GGG | + | chr1.2:40421274-40421293 | MS.gene37253:CDS | 35.0% | |
| TGGAACAAGAGCTCTTAAAA+TGG | + | chr1.2:40422474-40422493 | MS.gene37253:CDS | 35.0% | |
| TTCCAAATAGTCAAGTCATC+TGG | - | chr1.2:40422341-40422360 | None:intergenic | 35.0% | |
| TTCTATATCTATGGGTGAGA+AGG | + | chr1.2:40421273-40421292 | MS.gene37253:CDS | 35.0% | |
| !! | ACTGCTGGTTCTATATCTAT+GGG | + | chr1.2:40421265-40421284 | MS.gene37253:CDS | 35.0% |
| !! | GGTTTTTACTGTTTTTCTGC+AGG | + | chr1.2:40421824-40421843 | MS.gene37253:intron | 35.0% |
| !! | TACTGCTGGTTCTATATCTA+TGG | + | chr1.2:40421264-40421283 | MS.gene37253:CDS | 35.0% |
| AGGTAGCAATTTGGGTGATT+TGG | + | chr1.2:40421551-40421570 | MS.gene37253:intron | 40.0% | |
| AGTACATCTCTGAGCCAATA+TGG | + | chr1.2:40421143-40421162 | MS.gene37253:CDS | 40.0% | |
| CACTCGTAGTACATACAAGT+CGG | - | chr1.2:40421685-40421704 | None:intergenic | 40.0% | |
| GATATGGGAGGTAGCAATTT+GGG | + | chr1.2:40421543-40421562 | MS.gene37253:intron | 40.0% | |
| GATGTACTTTGGCCTGTATT+CGG | - | chr1.2:40421131-40421150 | None:intergenic | 40.0% | |
| GGAATGCTTGAATAGATGAC+TGG | + | chr1.2:40421720-40421739 | MS.gene37253:intron | 40.0% | |
| GTAGCTCCCAAAGGTAAAAA+AGG | + | chr1.2:40422365-40422384 | MS.gene37253:CDS | 40.0% | |
| GTCATCTATTCAAGCATTCC+CGG | - | chr1.2:40421720-40421739 | None:intergenic | 40.0% | |
| TCATCTATTCAAGCATTCCC+GGG | - | chr1.2:40421719-40421738 | None:intergenic | 40.0% | |
| TCTCAAAATCAAGAGGAAGG+AGG | + | chr1.2:40422287-40422306 | MS.gene37253:CDS | 40.0% | |
| TGATATGGGAGGTAGCAATT+TGG | + | chr1.2:40421542-40421561 | MS.gene37253:intron | 40.0% | |
| TGCCAGATGACTTGACTATT+TGG | + | chr1.2:40422336-40422355 | MS.gene37253:CDS | 40.0% | |
| ! | AATTATGGTCGTGGCTGTTT+TGG | - | chr1.2:40422148-40422167 | None:intergenic | 40.0% |
| ! | ATTGGCTCAGAGATGTACTT+TGG | - | chr1.2:40421142-40421161 | None:intergenic | 40.0% |
| ! | CTTAGCCGTTTGGTTTCTTT+GGG | + | chr1.2:40421991-40422010 | MS.gene37253:intron | 40.0% |
| ! | GAAGAGAAAAGCAGAGCTTT+TGG | + | chr1.2:40422253-40422272 | MS.gene37253:CDS | 40.0% |
| ! | TTAGTGTCTGTGTTGTTAGC+AGG | + | chr1.2:40421954-40421973 | MS.gene37253:intron | 40.0% |
| ! | TTTTTCTGCAGGGACTGATT+TGG | + | chr1.2:40421835-40421854 | MS.gene37253:intron | 40.0% |
| !!! | CCCCTTTGTTTTCCTTGATA+AGG | + | chr1.2:40422047-40422066 | MS.gene37253:intron | 40.0% |
| !!! | GGTTTTTTGGTTGGTGTTAG+TGG | + | chr1.2:40421905-40421924 | MS.gene37253:CDS | 40.0% |
| !!! | TTTGTGCAGCCTTGGTTTTT+TGG | + | chr1.2:40421892-40421911 | MS.gene37253:CDS | 40.0% |
| AGGAGGTAAAGGTTATGTCG+TGG | + | chr1.2:40421632-40421651 | MS.gene37253:intron | 45.0% | |
| AGGTAAAGGTTATGTCGTGG+AGG | + | chr1.2:40421635-40421654 | MS.gene37253:intron | 45.0% | |
| CAAGCAAAGTTTGGAGGCAA+TGG | - | chr1.2:40422623-40422642 | None:intergenic | 45.0% | |
| CATCTATTCAAGCATTCCCG+GGG | - | chr1.2:40421718-40421737 | None:intergenic | 45.0% | |
| CGACTTGTATGTACTACGAG+TGG | + | chr1.2:40421683-40421702 | MS.gene37253:intron | 45.0% | |
| CTGCTTCTGTAGCTTGGTTA+GGG | + | chr1.2:40421797-40421816 | MS.gene37253:intron | 45.0% | |
| GAGGCTTCAGCAACATCATT+TGG | - | chr1.2:40422668-40422687 | None:intergenic | 45.0% | |
| GATTGCTAGGTGGGATGATT+TGG | + | chr1.2:40421606-40421625 | MS.gene37253:intron | 45.0% | |
| GCAAATCGTGCTTCAACTCA+AGG | + | chr1.2:40421229-40421248 | MS.gene37253:CDS | 45.0% | |
| GTATGTACTACGAGTGGTGT+TGG | + | chr1.2:40421689-40421708 | MS.gene37253:intron | 45.0% | |
| TAAAGGTTATGTCGTGGAGG+TGG | + | chr1.2:40421638-40421657 | MS.gene37253:intron | 45.0% | |
| TGCTCTTTGCCACATTCGAA+AGG | + | chr1.2:40421428-40421447 | MS.gene37253:CDS | 45.0% | |
| ! | GCTTAGCCGTTTGGTTTCTT+TGG | + | chr1.2:40421990-40422009 | MS.gene37253:intron | 45.0% |
| ! | GTTTTCCTGCTTCTGTAGCT+TGG | + | chr1.2:40421791-40421810 | MS.gene37253:intron | 45.0% |
| ! | TGGATTTCAGGCTTCAGGTT+TGG | + | chr1.2:40421925-40421944 | MS.gene37253:CDS | 45.0% |
| !! | GGTTGGTGTTAGTGGATTTC+AGG | + | chr1.2:40421913-40421932 | MS.gene37253:CDS | 45.0% |
| !! | GTTAGTGGATTTCAGGCTTC+AGG | + | chr1.2:40421920-40421939 | MS.gene37253:CDS | 45.0% |
| !! | TGATTTGGTGGAGGAGGTAA+AGG | + | chr1.2:40421621-40421640 | MS.gene37253:intron | 45.0% |
| !!! | GGCTTTTTTGTTTTCCCTGC+TGG | + | chr1.2:40421741-40421760 | MS.gene37253:intron | 45.0% |
| !!! | TGCAGCCTTGGTTTTTTGGT+TGG | + | chr1.2:40421896-40421915 | MS.gene37253:CDS | 45.0% |
| !!! | TGTGGCGCTGCTGTTTTTAT+TGG | + | chr1.2:40421764-40421783 | MS.gene37253:intron | 45.0% |
| !!! | TTTTGTTTTCCCTGCTGGTG+TGG | + | chr1.2:40421746-40421765 | MS.gene37253:intron | 45.0% |
| !!! | TAAATTCTTAAAATTTTTAT+CGG | - | chr1.2:40421194-40421213 | None:intergenic | 5.0% |
| ATGTCGTGGAGGTGGTTGTT+AGG | + | chr1.2:40421646-40421665 | MS.gene37253:intron | 50.0% | |
| CCAAACGCAGTTACCTGTGA+TGG | - | chr1.2:40422095-40422114 | None:intergenic | 50.0% | |
| CCATCACAGGTAACTGCGTT+TGG | + | chr1.2:40422092-40422111 | MS.gene37253:intron | 50.0% | |
| CCTAACCAAGCTACAGAAGC+AGG | - | chr1.2:40421799-40421818 | None:intergenic | 50.0% | |
| CCTGCTTCTGTAGCTTGGTT+AGG | + | chr1.2:40421796-40421815 | MS.gene37253:intron | 50.0% | |
| GGTAGCTCCATTCATACTGC+TGG | + | chr1.2:40421250-40421269 | MS.gene37253:CDS | 50.0% | |
| GTCGCACAAGCAAAGTTTGG+AGG | - | chr1.2:40422629-40422648 | None:intergenic | 50.0% | |
| TATTGAGTGGCTGCCATCAC+AGG | + | chr1.2:40422079-40422098 | MS.gene37253:intron | 50.0% | |
| TGGAAGGAAGTAGCTCCCAA+AGG | + | chr1.2:40422356-40422375 | MS.gene37253:CDS | 50.0% | |
| TGTTGTTAGCAGGTGGTGTG+TGG | + | chr1.2:40421964-40421983 | MS.gene37253:intron | 50.0% | |
| ! | GGTGTCGCACAAGCAAAGTT+TGG | - | chr1.2:40422632-40422651 | None:intergenic | 50.0% |
| ! | GTGTCTGTGTTGTTAGCAGG+TGG | + | chr1.2:40421957-40421976 | MS.gene37253:intron | 50.0% |
| ! | TGCTAGGTGGGATGATTTGG+TGG | + | chr1.2:40421609-40421628 | MS.gene37253:intron | 50.0% |
| !! | TAGGTGGGATGATTTGGTGG+AGG | + | chr1.2:40421612-40421631 | MS.gene37253:intron | 50.0% |
| !!! | CAGCTGCTGGTTTTTAGGTG+GGG | + | chr1.2:40421859-40421878 | MS.gene37253:CDS | 50.0% |
| !!! | CCAGCTGCTGGTTTTTAGGT+GGG | + | chr1.2:40421858-40421877 | MS.gene37253:CDS | 50.0% |
| !!! | TGGTCGTGGCTGTTTTGGTT+AGG | - | chr1.2:40422143-40422162 | None:intergenic | 50.0% |
| !!! | TTGGCCAGCTGCTGGTTTTT+AGG | + | chr1.2:40421854-40421873 | MS.gene37253:CDS | 50.0% |
| CCCACCTAAAAACCAGCAGC+TGG | - | chr1.2:40421861-40421880 | None:intergenic | 55.0% | |
| CTATGGGTGAGAAGGGACGT+AGG | + | chr1.2:40421281-40421300 | MS.gene37253:CDS | 55.0% | |
| CTGTAGCTTGGTTAGGGAGC+TGG | + | chr1.2:40421803-40421822 | MS.gene37253:intron | 55.0% | |
| GCAAATACCTCCTCCACTGC+AGG | - | chr1.2:40421411-40421430 | None:intergenic | 55.0% | |
| GTGTGGAAGGCTTAGCCGTT+TGG | + | chr1.2:40421981-40422000 | MS.gene37253:intron | 55.0% | |
| GTTAGCAGGTGGTGTGTGGA+AGG | + | chr1.2:40421968-40421987 | MS.gene37253:intron | 55.0% | |
| TTTGGACAGCTGTCTGCGCA+CGG | + | chr1.2:40422110-40422129 | MS.gene37253:intron | 55.0% | |
| ! | ACGAGTGGTGTTGGAATCCC+CGG | + | chr1.2:40421698-40421717 | MS.gene37253:intron | 55.0% |
| ! | TCAGGCTTCAGGTTTGGCAG+TGG | + | chr1.2:40421931-40421950 | MS.gene37253:CDS | 55.0% |
| !! | GTGGGATGATTTGGTGGAGG+AGG | + | chr1.2:40421615-40421634 | MS.gene37253:intron | 55.0% |
| !!! | GCCAGCTGCTGGTTTTTAGG+TGG | + | chr1.2:40421857-40421876 | MS.gene37253:CDS | 55.0% |
| CGCTGGTGTTTGTGCAGCCT+TGG | + | chr1.2:40421884-40421903 | MS.gene37253:CDS | 60.0% | |
| GGGTGAGAAGGGACGTAGGA+TGG | + | chr1.2:40421285-40421304 | MS.gene37253:CDS | 60.0% | |
| ! | CGAGTGGTGTTGGAATCCCC+GGG | + | chr1.2:40421699-40421718 | MS.gene37253:intron | 60.0% |
| !! | GGACTGATTTGGCCAGCTGC+TGG | + | chr1.2:40421846-40421865 | MS.gene37253:CDS | 60.0% |
| !!! | GGTTTTTAGGTGGGGTGCGC+TGG | + | chr1.2:40421867-40421886 | MS.gene37253:CDS | 60.0% |
| AACAGCAGCGCCACACCAGC+AGG | - | chr1.2:40421759-40421778 | None:intergenic | 65.0% | |
| AACAGGAGCCACGCCTGCAG+TGG | + | chr1.2:40421395-40421414 | MS.gene37253:CDS | 65.0% | |
| ACAGCAGCGCCACACCAGCA+GGG | - | chr1.2:40421758-40421777 | None:intergenic | 65.0% | |
| TACCTCCTCCACTGCAGGCG+TGG | - | chr1.2:40421406-40421425 | None:intergenic | 65.0% | |
| AGCCACGCCTGCAGTGGAGG+AGG | + | chr1.2:40421401-40421420 | MS.gene37253:CDS | 70.0% | |
| AGGAGCCACGCCTGCAGTGG+AGG | + | chr1.2:40421398-40421417 | MS.gene37253:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 40421091 | 40422724 | 40421091 | ID=MS.gene37253 |
| chr1.2 | mRNA | 40421091 | 40422724 | 40421091 | ID=MS.gene37253.t1;Parent=MS.gene37253 |
| chr1.2 | exon | 40421091 | 40421306 | 40421091 | ID=MS.gene37253.t1.exon1;Parent=MS.gene37253.t1 |
| chr1.2 | CDS | 40421091 | 40421306 | 40421091 | ID=cds.MS.gene37253.t1;Parent=MS.gene37253.t1 |
| chr1.2 | exon | 40421387 | 40421492 | 40421387 | ID=MS.gene37253.t1.exon2;Parent=MS.gene37253.t1 |
| chr1.2 | CDS | 40421387 | 40421492 | 40421387 | ID=cds.MS.gene37253.t1;Parent=MS.gene37253.t1 |
| chr1.2 | exon | 40421846 | 40421952 | 40421846 | ID=MS.gene37253.t1.exon3;Parent=MS.gene37253.t1 |
| chr1.2 | CDS | 40421846 | 40421952 | 40421846 | ID=cds.MS.gene37253.t1;Parent=MS.gene37253.t1 |
| chr1.2 | exon | 40422242 | 40422724 | 40422242 | ID=MS.gene37253.t1.exon4;Parent=MS.gene37253.t1 |
| chr1.2 | CDS | 40422242 | 40422724 | 40422242 | ID=cds.MS.gene37253.t1;Parent=MS.gene37253.t1 |
| Gene Sequence |
| Protein sequence |
