AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37284

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37284.t1 MTR_1g053910 98.538 342 5 0 1 342 1 342 0.0 680
MS.gene37284.t1 MTR_5g014110 30.473 338 200 12 1 309 1 332 3.11e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37284.t1 AT3G57990 50.130 385 125 13 1 337 1 366 2.54e-101 303

Find 104 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTCGGCTGGGGCGATTGC+GGG 0.213728 1.2:-39802044 MS.gene37284:CDS
GGGTACTTTGGCTCTTAATA+AGG 0.214485 1.2:+39802505 None:intergenic
GTTGGGAAGGTGCCGTCGGC+TGG 0.227740 1.2:-39802056 MS.gene37284:CDS
TCCGCAAAACGGTGGCGTTT+TGG 0.257586 1.2:-39802135 MS.gene37284:CDS
CTGAGGTTGCGGCGAGGACT+AGG 0.264777 1.2:-39802007 MS.gene37284:CDS
TAGGGTTCCGGCTGAGGTTA+AGG 0.286798 1.2:-39801940 MS.gene37284:CDS
AAAGTACCCTTAAGTATTCT+AGG 0.304763 1.2:-39802491 MS.gene37284:CDS
GAGGACTAGGGTTCCGATTA+GGG 0.309618 1.2:-39801994 MS.gene37284:CDS
CGAGGACTAGGGTTCCGATT+AGG 0.329022 1.2:-39801995 MS.gene37284:CDS
TTGGGAAGGTGCCGTCGGCT+GGG 0.374328 1.2:-39802055 MS.gene37284:CDS
GGTACTTTGGCTCTTAATAA+GGG 0.376042 1.2:+39802506 None:intergenic
GGCTGATGCGAGCAAGGAAT+TGG 0.376840 1.2:-39801577 MS.gene37284:CDS
GCGAGTTCAATTTGCTGAAC+CGG 0.376874 1.2:-39802274 MS.gene37284:CDS
AAAGGAAAGGTTGGTGCTGC+TGG 0.377756 1.2:-39801822 MS.gene37284:CDS
GTTAAGGGCGAAAGCGCGTT+TGG 0.381376 1.2:-39801924 MS.gene37284:CDS
TGGTGTTCCTAGAATACTTA+AGG 0.385759 1.2:+39802484 None:intergenic
TTTCTTGTGATGGATAAAAT+CGG 0.402604 1.2:-39801891 MS.gene37284:CDS
TAGAATACTTAAGGGTACTT+TGG 0.408843 1.2:+39802493 None:intergenic
TGGGAAGGTGCCGTCGGCTG+GGG 0.411595 1.2:-39802054 MS.gene37284:CDS
ACCGCGGCACGTCCCCTAAT+CGG 0.411961 1.2:+39801981 None:intergenic
CTCTCTACTTTCTTCCAATC+CGG 0.413895 1.2:-39802413 MS.gene37284:CDS
GTGATTGGTGGGTTTAGTGT+TGG 0.426235 1.2:-39802074 MS.gene37284:CDS
AACATTTGCCCGCGGAGTGT+GGG 0.432136 1.2:-39801863 MS.gene37284:CDS
TTCTTGTGATGGATAAAATC+GGG 0.439577 1.2:-39801890 MS.gene37284:CDS
AGAAAGAATGAGAAGAAAAC+CGG 0.442575 1.2:-39801636 MS.gene37284:CDS
TTTGTTGAATCGCCGGTGAT+TGG 0.445790 1.2:-39802089 MS.gene37284:CDS
AGGGTTCCGGCTGAGGTTAA+GGG 0.446628 1.2:-39801939 MS.gene37284:CDS
GGAGAGAATTCGCTAGTGTA+AGG 0.447654 1.2:-39801686 MS.gene37284:CDS
GGAATGCTGTGGAGGATCTT+CGG 0.449412 1.2:-39801707 MS.gene37284:CDS
GTTTCAACGTTGGACCGGAT+TGG 0.450991 1.2:+39802399 None:intergenic
TGGTGGGTTTAGTGTTGGGA+AGG 0.453502 1.2:-39802069 MS.gene37284:CDS
GAACATTTGCCCGCGGAGTG+TGG 0.458823 1.2:-39801864 MS.gene37284:CDS
AAGGGTTCCGTTTCTTGTGA+TGG 0.460439 1.2:-39801901 MS.gene37284:CDS
TTGATCGTGAAAACCGGTAC+TGG 0.460979 1.2:-39802338 MS.gene37284:CDS
CTTTCGCCCTTAACCTCAGC+CGG 0.466668 1.2:+39801933 None:intergenic
GCCGTCGGCTGGGGCGATTG+CGG 0.472234 1.2:-39802045 MS.gene37284:CDS
TTGAGGGGAGCCACCGCTGT+TGG 0.475505 1.2:-39801546 MS.gene37284:CDS
GGAATTGGAGAAGGCTTTGA+GGG 0.478287 1.2:-39801562 MS.gene37284:CDS
GAAAAGCGGTTGAGGCGAAC+CGG 0.480787 1.2:+39802241 None:intergenic
GATTTGAAGAATTTGAAGAA+AGG 0.489031 1.2:-39801840 MS.gene37284:CDS
GGTTATGCGTTTCCGCAAAA+CGG 0.490258 1.2:-39802146 MS.gene37284:CDS
TGATTGGTGGGTTTAGTGTT+GGG 0.493189 1.2:-39802073 MS.gene37284:CDS
GTTGAATCGCCGGTGATTGG+TGG 0.493682 1.2:-39802086 MS.gene37284:CDS
AGCGAGTTTCAACGTTGGAC+CGG 0.495604 1.2:+39802394 None:intergenic
CCCGCAATCGCCCCAGCCGA+CGG 0.501340 1.2:+39802044 None:intergenic
CTGAACCGGAATGATAAAAC+CGG 0.502962 1.2:-39802260 MS.gene37284:CDS
AAGGTTGGTGCTGCTGGAGT+TGG 0.503818 1.2:-39801816 MS.gene37284:CDS
GAATTCGCTAGTGTAAGGAT+TGG 0.504292 1.2:-39801681 MS.gene37284:CDS
AGGGCGAAAGCGCGTTTGGA+AGG 0.504417 1.2:-39801920 MS.gene37284:CDS
GGTGTTCCTAGAATACTTAA+GGG 0.514250 1.2:+39802485 None:intergenic
CACCAGCTACGATTCCACTT+TGG 0.514768 1.2:+39802459 None:intergenic
TGAAGCATGAAAAGCGGTTG+AGG 0.515244 1.2:+39802233 None:intergenic
TGAGGTTGCGGCGAGGACTA+GGG 0.516942 1.2:-39802006 MS.gene37284:CDS
TTCCAAAGTGGAATCGTAGC+TGG 0.522097 1.2:-39802461 MS.gene37284:CDS
GGAGGAGGGAAAAGCTTCGA+GGG 0.523428 1.2:-39801660 MS.gene37284:CDS
GAAGAATTTGAAGAAAGGAA+AGG 0.533083 1.2:-39801835 MS.gene37284:CDS
CGTCGGCTGGGGCGATTGCG+GGG 0.534118 1.2:-39802043 MS.gene37284:CDS
ACATTTGCCCGCGGAGTGTG+GGG 0.535348 1.2:-39801862 MS.gene37284:CDS
TTCGCTAGTGTAAGGATTGG+AGG 0.540336 1.2:-39801678 MS.gene37284:CDS
AACTGAGGCTGATGCGAGCA+AGG 0.541788 1.2:-39801583 MS.gene37284:CDS
TGGAGGAGGGAAAAGCTTCG+AGG 0.542926 1.2:-39801661 MS.gene37284:CDS
TCCGATTAGGGGACGTGCCG+CGG 0.544241 1.2:-39801982 MS.gene37284:CDS
AATTTGAAGAAAGGAAAGGT+TGG 0.544445 1.2:-39801831 MS.gene37284:CDS
TCAGCCTCAGTTGATTTCCC+AGG 0.546559 1.2:+39801594 None:intergenic
TTCAAATCCCCACACTCCGC+GGG 0.553400 1.2:+39801855 None:intergenic
TTGAATCGCCGGTGATTGGT+GGG 0.555286 1.2:-39802085 MS.gene37284:CDS
ATTTGAGTTTGTTGAATCGC+CGG 0.555808 1.2:-39802096 MS.gene37284:CDS
AGGAATTGGAGAAGGCTTTG+AGG 0.558301 1.2:-39801563 MS.gene37284:CDS
GGGCGAAAGCGCGTTTGGAA+GGG 0.559583 1.2:-39801919 MS.gene37284:CDS
TAGTGTTGGGAAGGTGCCGT+CGG 0.569599 1.2:-39802060 MS.gene37284:CDS
TGAACCGAACGGTCCAGTAC+CGG 0.570691 1.2:+39802325 None:intergenic
ACACTAAACCCACCAATCAC+CGG 0.574720 1.2:+39802077 None:intergenic
AAAACCGGTACTGGACCGTT+CGG 0.575742 1.2:-39802329 MS.gene37284:CDS
TCGGCCACATCAGCACTTGT+CGG 0.582645 1.2:+39801789 None:intergenic
GCTAGTGTAAGGATTGGAGG+AGG 0.592495 1.2:-39801675 MS.gene37284:CDS
GCTACGATTCCACTTTGGAA+TGG 0.605154 1.2:+39802464 None:intergenic
AATTCAAGCTCCAACAGCGG+TGG 0.608103 1.2:+39801536 None:intergenic
TGCGGTTAAGAGGCAAATGG+AGG 0.613522 1.2:-39801757 MS.gene37284:CDS
TGCGAGCAAGGAATTGGAGA+AGG 0.617138 1.2:-39801571 MS.gene37284:CDS
CTTCAAATCCCCACACTCCG+CGG 0.618562 1.2:+39801854 None:intergenic
TGTTCCGACAAGTGCTGATG+TGG 0.619145 1.2:-39801793 MS.gene37284:CDS
TTAAAATGAAGCATGAAAAG+CGG 0.624010 1.2:+39802227 None:intergenic
TATGCGTTTCCGCAAAACGG+TGG 0.624687 1.2:-39802143 MS.gene37284:CDS
TTGAATTCAAGCTCCAACAG+CGG 0.635030 1.2:+39801533 None:intergenic
CTTAACCGCAAAACACGTCT+CGG 0.640609 1.2:+39801770 None:intergenic
CAGGGACTGAGGTTGCGGCG+AGG 0.645900 1.2:-39802013 MS.gene37284:CDS
GAAAGAATGAGAAGAAAACC+GGG 0.648044 1.2:-39801635 MS.gene37284:CDS
GAATGAGAAGAAAACCGGGT+CGG 0.658276 1.2:-39801631 MS.gene37284:CDS
GAATTGGAGAAGGCTTTGAG+GGG 0.659200 1.2:-39801561 MS.gene37284:CDS
TCTTGTGATGGATAAAATCG+GGG 0.660603 1.2:-39801889 MS.gene37284:CDS
AGGACTAGGGTTCCGATTAG+GGG 0.661644 1.2:-39801993 MS.gene37284:CDS
ATTGCTGAGGAATGCTGTGG+AGG 0.665643 1.2:-39801715 MS.gene37284:CDS
CTCGACAACGGTGAACCGAA+CGG 0.669798 1.2:+39802314 None:intergenic
CTAGTGTAAGGATTGGAGGA+GGG 0.671920 1.2:-39801674 MS.gene37284:CDS
CGGGGTGGAACATTTGCCCG+CGG 0.676900 1.2:-39801871 MS.gene37284:CDS
TGGATTGCTGAGGAATGCTG+TGG 0.678621 1.2:-39801718 MS.gene37284:CDS
CTAGGAACACCATTCCAAAG+TGG 0.680514 1.2:-39802473 MS.gene37284:CDS
CGGTAAGCGAGTTTCAACGT+TGG 0.681726 1.2:+39802389 None:intergenic
AGGCGGAGAATGGATTGCTG+AGG 0.686457 1.2:-39801728 MS.gene37284:CDS
TGTGATGGATAAAATCGGGG+TGG 0.694966 1.2:-39801886 MS.gene37284:CDS
ATAACCACTAAAATCCGACC+CGG 0.702407 1.2:+39801617 None:intergenic
GAGGAGGGAAAAGCTTCGAG+GGG 0.705462 1.2:-39801659 MS.gene37284:CDS
ATCAGCATAGAACTCGACAA+CGG 0.713613 1.2:+39802302 None:intergenic
TTATCCTGGGAAATCAACTG+AGG 0.726573 1.2:-39801598 MS.gene37284:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GATTTGAAGAATTTGAAGAA+AGG - chr1.2:39802244-39802263 MS.gene37284:CDS 25.0%
! TTAAAATGAAGCATGAAAAG+CGG + chr1.2:39801860-39801879 None:intergenic 25.0%
!! AGTTCGATTTTAGATGTTAA+GGG - chr1.2:39801917-39801936 MS.gene37284:CDS 25.0%
!! ATTTTATCCATCACAAGAAA+CGG + chr1.2:39802193-39802212 None:intergenic 25.0%
!! TTCATTTTAAACCTAGGTTT+GGG - chr1.2:39801870-39801889 MS.gene37284:CDS 25.0%
!!! TTTCTTGTGATGGATAAAAT+CGG - chr1.2:39802193-39802212 MS.gene37284:CDS 25.0%
AATTTGAAGAAAGGAAAGGT+TGG - chr1.2:39802253-39802272 MS.gene37284:CDS 30.0%
AGAAAGAATGAGAAGAAAAC+CGG - chr1.2:39802448-39802467 MS.gene37284:CDS 30.0%
GAAGAATTTGAAGAAAGGAA+AGG - chr1.2:39802249-39802268 MS.gene37284:CDS 30.0%
! AAAGTACCCTTAAGTATTCT+AGG - chr1.2:39801593-39801612 MS.gene37284:CDS 30.0%
! CTTCATTTTAAACCTAGGTT+TGG - chr1.2:39801869-39801888 MS.gene37284:CDS 30.0%
! GAGTTCGATTTTAGATGTTA+AGG - chr1.2:39801916-39801935 MS.gene37284:CDS 30.0%
! GTTTTCACGATCAATGAAAA+CGG + chr1.2:39801740-39801759 None:intergenic 30.0%
! TCATGCTTCATTTTAAACCT+AGG - chr1.2:39801864-39801883 MS.gene37284:CDS 30.0%
! TCATTTTAAACCTAGGTTTG+GGG - chr1.2:39801871-39801890 MS.gene37284:CDS 30.0%
! TTTTCACGATCAATGAAAAC+GGG + chr1.2:39801739-39801758 None:intergenic 30.0%
! TTTTCATTGATCGTGAAAAC+CGG - chr1.2:39801740-39801759 MS.gene37284:CDS 30.0%
!! TAGAATACTTAAGGGTACTT+TGG + chr1.2:39801594-39801613 None:intergenic 30.0%
!! TTCTTGTGATGGATAAAATC+GGG - chr1.2:39802194-39802213 MS.gene37284:CDS 30.0%
AAAGAAAAATCCCCAAACCT+AGG + chr1.2:39801884-39801903 None:intergenic 35.0%
GAAAGAATGAGAAGAAAACC+GGG - chr1.2:39802449-39802468 MS.gene37284:CDS 35.0%
GGTGTTCCTAGAATACTTAA+GGG + chr1.2:39801602-39801621 None:intergenic 35.0%
TGGTGTTCCTAGAATACTTA+AGG + chr1.2:39801603-39801622 None:intergenic 35.0%
! AGGGTTTCTTTTGTTCATCA+CGG + chr1.2:39801562-39801581 None:intergenic 35.0%
!! ATTTGAGTTTGTTGAATCGC+CGG - chr1.2:39801988-39802007 MS.gene37284:CDS 35.0%
!! GGTACTTTGGCTCTTAATAA+GGG + chr1.2:39801581-39801600 None:intergenic 35.0%
!! TCTTGTGATGGATAAAATCG+GGG - chr1.2:39802195-39802214 MS.gene37284:CDS 35.0%
ATAACCACTAAAATCCGACC+CGG + chr1.2:39802470-39802489 None:intergenic 40.0%
ATCAGCATAGAACTCGACAA+CGG + chr1.2:39801785-39801804 None:intergenic 40.0%
CTCTCTACTTTCTTCCAATC+CGG - chr1.2:39801671-39801690 MS.gene37284:CDS 40.0%
CTGAACCGGAATGATAAAAC+CGG - chr1.2:39801824-39801843 MS.gene37284:CDS 40.0%
GAATTCGCTAGTGTAAGGAT+TGG - chr1.2:39802403-39802422 MS.gene37284:CDS 40.0%
TTATCCTGGGAAATCAACTG+AGG - chr1.2:39802486-39802505 MS.gene37284:CDS 40.0%
! TTTTGCGGTTAAGAGGCAAA+TGG - chr1.2:39802324-39802343 MS.gene37284:CDS 40.0%
!! CGGATTTTAGTGGTTATCCT+GGG - chr1.2:39802473-39802492 MS.gene37284:CDS 40.0%
!! GGGTACTTTGGCTCTTAATA+AGG + chr1.2:39801582-39801601 None:intergenic 40.0%
!! TCGGATTTTAGTGGTTATCC+TGG - chr1.2:39802472-39802491 MS.gene37284:CDS 40.0%
!! TGATTGGTGGGTTTAGTGTT+GGG - chr1.2:39802011-39802030 MS.gene37284:CDS 40.0%
AAGGGTTCCGTTTCTTGTGA+TGG - chr1.2:39802183-39802202 MS.gene37284:CDS 45.0%
ACACTAAACCCACCAATCAC+CGG + chr1.2:39802010-39802029 None:intergenic 45.0%
AGGAATTGGAGAAGGCTTTG+AGG - chr1.2:39802521-39802540 MS.gene37284:CDS 45.0%
CTAGGAACACCATTCCAAAG+TGG - chr1.2:39801611-39801630 MS.gene37284:CDS 45.0%
CTAGTGTAAGGATTGGAGGA+GGG - chr1.2:39802410-39802429 MS.gene37284:CDS 45.0%
CTTAACCGCAAAACACGTCT+CGG + chr1.2:39802317-39802336 None:intergenic 45.0%
GAATGAGAAGAAAACCGGGT+CGG - chr1.2:39802453-39802472 MS.gene37284:CDS 45.0%
GGAGAGAATTCGCTAGTGTA+AGG - chr1.2:39802398-39802417 MS.gene37284:CDS 45.0%
GGTTATGCGTTTCCGCAAAA+CGG - chr1.2:39801938-39801957 MS.gene37284:CDS 45.0%
TGAAGCATGAAAAGCGGTTG+AGG + chr1.2:39801854-39801873 None:intergenic 45.0%
TTCCAAAGTGGAATCGTAGC+TGG - chr1.2:39801623-39801642 MS.gene37284:CDS 45.0%
TTCGCTAGTGTAAGGATTGG+AGG - chr1.2:39802406-39802425 MS.gene37284:CDS 45.0%
TTGATCGTGAAAACCGGTAC+TGG - chr1.2:39801746-39801765 MS.gene37284:CDS 45.0%
TTTGTTGAATCGCCGGTGAT+TGG - chr1.2:39801995-39802014 MS.gene37284:CDS 45.0%
! AAAACCGGGTCGGATTTTAG+TGG - chr1.2:39802463-39802482 MS.gene37284:CDS 45.0%
! AGACGTGTTTTGCGGTTAAG+AGG - chr1.2:39802317-39802336 MS.gene37284:CDS 45.0%
! GCTACGATTCCACTTTGGAA+TGG + chr1.2:39801623-39801642 None:intergenic 45.0%
! GGAATTGGAGAAGGCTTTGA+GGG - chr1.2:39802522-39802541 MS.gene37284:CDS 45.0%
!! AAACGGGTTTTGTGAGTCGT+TGG + chr1.2:39801723-39801742 None:intergenic 45.0%
!! AACGGGTTTTGTGAGTCGTT+GGG + chr1.2:39801722-39801741 None:intergenic 45.0%
!! GAATTGGAGAAGGCTTTGAG+GGG - chr1.2:39802523-39802542 MS.gene37284:CDS 45.0%
!! GAATTTTAGGTGGGGGGTTA+GGG - chr1.2:39802126-39802145 MS.gene37284:CDS 45.0%
!! GCGAACCGGTTTTATCATTC+CGG + chr1.2:39801832-39801851 None:intergenic 45.0%
!! GCGAGTTCAATTTGCTGAAC+CGG - chr1.2:39801810-39801829 MS.gene37284:CDS 45.0%
!! GTGATTGGTGGGTTTAGTGT+TGG - chr1.2:39802010-39802029 MS.gene37284:CDS 45.0%
!! TGAATTTTAGGTGGGGGGTT+AGG - chr1.2:39802125-39802144 MS.gene37284:CDS 45.0%
!! TGTGATGGATAAAATCGGGG+TGG - chr1.2:39802198-39802217 MS.gene37284:CDS 45.0%
AGCGAGTTTCAACGTTGGAC+CGG + chr1.2:39801693-39801712 None:intergenic 50.0%
AGGACTAGGGTTCCGATTAG+GGG - chr1.2:39802091-39802110 MS.gene37284:CDS 50.0%
ATTGCTGAGGAATGCTGTGG+AGG - chr1.2:39802369-39802388 MS.gene37284:CDS 50.0%
CACCAGCTACGATTCCACTT+TGG + chr1.2:39801628-39801647 None:intergenic 50.0%
CGGTAAGCGAGTTTCAACGT+TGG + chr1.2:39801698-39801717 None:intergenic 50.0%
GAGGACTAGGGTTCCGATTA+GGG - chr1.2:39802090-39802109 MS.gene37284:CDS 50.0%
GCTAGTGTAAGGATTGGAGG+AGG - chr1.2:39802409-39802428 MS.gene37284:CDS 50.0%
GGAATGCTGTGGAGGATCTT+CGG - chr1.2:39802377-39802396 MS.gene37284:CDS 50.0%
GTTTCAACGTTGGACCGGAT+TGG + chr1.2:39801688-39801707 None:intergenic 50.0%
TATGCGTTTCCGCAAAACGG+TGG - chr1.2:39801941-39801960 MS.gene37284:CDS 50.0%
TGCGAGCAAGGAATTGGAGA+AGG - chr1.2:39802513-39802532 MS.gene37284:CDS 50.0%
TGCGGTTAAGAGGCAAATGG+AGG - chr1.2:39802327-39802346 MS.gene37284:CDS 50.0%
TGGATTGCTGAGGAATGCTG+TGG - chr1.2:39802366-39802385 MS.gene37284:CDS 50.0%
TTGAATCGCCGGTGATTGGT+GGG - chr1.2:39801999-39802018 MS.gene37284:CDS 50.0%
! AAAACCGGTACTGGACCGTT+CGG - chr1.2:39801755-39801774 MS.gene37284:CDS 50.0%
! GAGGCAAATGGAGGTTTTGC+AGG - chr1.2:39802336-39802355 MS.gene37284:CDS 50.0%
! GCAAATGGAGGTTTTGCAGG+CGG - chr1.2:39802339-39802358 MS.gene37284:CDS 50.0%
! TCAGCCTCAGTTGATTTCCC+AGG + chr1.2:39802493-39802512 None:intergenic 50.0%
!! AAAGGAAAGGTTGGTGCTGC+TGG - chr1.2:39802262-39802281 MS.gene37284:CDS 50.0%
!! CGATTGCGGGGTTGTTTTCA+GGG - chr1.2:39802053-39802072 MS.gene37284:CDS 50.0%
!! GGTTTTGTGAGTCGTTGGGT+CGG + chr1.2:39801718-39801737 None:intergenic 50.0%
!! GTTTTCAGGGACTGAGGTTG+CGG - chr1.2:39802066-39802085 MS.gene37284:CDS 50.0%
!! TGCCGCGGTGAATTTTAGGT+GGG - chr1.2:39802117-39802136 MS.gene37284:CDS 50.0%
!! TGGTGGGTTTAGTGTTGGGA+AGG - chr1.2:39802015-39802034 MS.gene37284:CDS 50.0%
!! TGTTCCGACAAGTGCTGATG+TGG - chr1.2:39802291-39802310 MS.gene37284:CDS 50.0%
!!! TGGCGTTTTGGGGAATGATG+AGG - chr1.2:39801961-39801980 MS.gene37284:CDS 50.0%
AACATTTGCCCGCGGAGTGT+GGG - chr1.2:39802221-39802240 MS.gene37284:CDS 55.0%
AACTGAGGCTGATGCGAGCA+AGG - chr1.2:39802501-39802520 MS.gene37284:CDS 55.0%
AGGGTTCCGGCTGAGGTTAA+GGG - chr1.2:39802145-39802164 MS.gene37284:CDS 55.0%
CCCCCACCTAAAATTCACCG+CGG + chr1.2:39802122-39802141 None:intergenic 55.0%
CGAGGACTAGGGTTCCGATT+AGG - chr1.2:39802089-39802108 MS.gene37284:CDS 55.0%
CTCGACAACGGTGAACCGAA+CGG + chr1.2:39801773-39801792 None:intergenic 55.0%
CTTCAAATCCCCACACTCCG+CGG + chr1.2:39802233-39802252 None:intergenic 55.0%
CTTTCGCCCTTAACCTCAGC+CGG + chr1.2:39802154-39802173 None:intergenic 55.0%
GAAAAGCGGTTGAGGCGAAC+CGG + chr1.2:39801846-39801865 None:intergenic 55.0%
GAGGAGGGAAAAGCTTCGAG+GGG - chr1.2:39802425-39802444 MS.gene37284:CDS 55.0%
GGAGGAGGGAAAAGCTTCGA+GGG - chr1.2:39802424-39802443 MS.gene37284:CDS 55.0%
GGCTGATGCGAGCAAGGAAT+TGG - chr1.2:39802507-39802526 MS.gene37284:CDS 55.0%
GTTGAATCGCCGGTGATTGG+TGG - chr1.2:39801998-39802017 MS.gene37284:CDS 55.0%
TAGGGTTCCGGCTGAGGTTA+AGG - chr1.2:39802144-39802163 MS.gene37284:CDS 55.0%
TCGGCCACATCAGCACTTGT+CGG + chr1.2:39802298-39802317 None:intergenic 55.0%
TGAACCGAACGGTCCAGTAC+CGG + chr1.2:39801762-39801781 None:intergenic 55.0%
TGGAGGAGGGAAAAGCTTCG+AGG - chr1.2:39802423-39802442 MS.gene37284:CDS 55.0%
TTCAAATCCCCACACTCCGC+GGG + chr1.2:39802232-39802251 None:intergenic 55.0%
! CCCAAAACGCCACCGTTTTG+CGG + chr1.2:39801953-39801972 None:intergenic 55.0%
! CCGCAAAACGGTGGCGTTTT+GGG - chr1.2:39801950-39801969 MS.gene37284:CDS 55.0%
! CGCAAAACGGTGGCGTTTTG+GGG - chr1.2:39801951-39801970 MS.gene37284:CDS 55.0%
! GACGTGCCGCGGTGAATTTT+AGG - chr1.2:39802113-39802132 MS.gene37284:CDS 55.0%
! GAGGTTTTGCAGGCGGAGAA+TGG - chr1.2:39802346-39802365 MS.gene37284:CDS 55.0%
! GTGCCGCGGTGAATTTTAGG+TGG - chr1.2:39802116-39802135 MS.gene37284:CDS 55.0%
! GTTAAGGGCGAAAGCGCGTT+TGG - chr1.2:39802160-39802179 MS.gene37284:CDS 55.0%
! TCCGCAAAACGGTGGCGTTT+TGG - chr1.2:39801949-39801968 MS.gene37284:CDS 55.0%
! TGTGGCCGAGACGTGTTTTG+CGG - chr1.2:39802309-39802328 MS.gene37284:CDS 55.0%
!! AAGGTTGGTGCTGCTGGAGT+TGG - chr1.2:39802268-39802287 MS.gene37284:CDS 55.0%
!! AGGCGGAGAATGGATTGCTG+AGG - chr1.2:39802356-39802375 MS.gene37284:CDS 55.0%
!! CCGCGGTGAATTTTAGGTGG+GGG - chr1.2:39802119-39802138 MS.gene37284:CDS 55.0%
!! CGCGGTGAATTTTAGGTGGG+GGG - chr1.2:39802120-39802139 MS.gene37284:CDS 55.0%
!! GCCGCGGTGAATTTTAGGTG+GGG - chr1.2:39802118-39802137 MS.gene37284:CDS 55.0%
!! GCGATTGCGGGGTTGTTTTC+AGG - chr1.2:39802052-39802071 MS.gene37284:CDS 55.0%
!! GGGGTTGTTTTCAGGGACTG+AGG - chr1.2:39802060-39802079 MS.gene37284:CDS 55.0%
!! TAGTGTTGGGAAGGTGCCGT+CGG - chr1.2:39802024-39802043 MS.gene37284:CDS 55.0%
ACATTTGCCCGCGGAGTGTG+GGG - chr1.2:39802222-39802241 MS.gene37284:CDS 60.0%
GAACATTTGCCCGCGGAGTG+TGG - chr1.2:39802220-39802239 MS.gene37284:CDS 60.0%
TAGGTGGGGGGTTAGGGTTC+CGG - chr1.2:39802132-39802151 MS.gene37284:CDS 60.0%
TGAGGTTGCGGCGAGGACTA+GGG - chr1.2:39802078-39802097 MS.gene37284:CDS 60.0%
! AGGGCGAAAGCGCGTTTGGA+AGG - chr1.2:39802164-39802183 MS.gene37284:CDS 60.0%
! GGGCGAAAGCGCGTTTGGAA+GGG - chr1.2:39802165-39802184 MS.gene37284:CDS 60.0%
ACCGCGGCACGTCCCCTAAT+CGG + chr1.2:39802106-39802125 None:intergenic 65.0%
CGGGGTGGAACATTTGCCCG+CGG - chr1.2:39802213-39802232 MS.gene37284:CDS 65.0%
CTGAGGTTGCGGCGAGGACT+AGG - chr1.2:39802077-39802096 MS.gene37284:CDS 65.0%
TCCGATTAGGGGACGTGCCG+CGG - chr1.2:39802102-39802121 MS.gene37284:CDS 65.0%
TTGAGGGGAGCCACCGCTGT+TGG - chr1.2:39802538-39802557 MS.gene37284:CDS 65.0%
!! TTGGGAAGGTGCCGTCGGCT+GGG - chr1.2:39802029-39802048 MS.gene37284:CDS 65.0%
CAGGGACTGAGGTTGCGGCG+AGG - chr1.2:39802071-39802090 MS.gene37284:CDS 70.0%
GGGGGTTAGGGTTCCGGCTG+AGG - chr1.2:39802138-39802157 MS.gene37284:CDS 70.0%
!! GTTGGGAAGGTGCCGTCGGC+TGG - chr1.2:39802028-39802047 MS.gene37284:CDS 70.0%
!! TGGGAAGGTGCCGTCGGCTG+GGG - chr1.2:39802030-39802049 MS.gene37284:CDS 70.0%
CCCGCAATCGCCCCAGCCGA+CGG + chr1.2:39802043-39802062 None:intergenic 75.0%
! CCGTCGGCTGGGGCGATTGC+GGG - chr1.2:39802040-39802059 MS.gene37284:CDS 75.0%
! CGTCGGCTGGGGCGATTGCG+GGG - chr1.2:39802041-39802060 MS.gene37284:CDS 75.0%
! GCCGTCGGCTGGGGCGATTG+CGG - chr1.2:39802039-39802058 MS.gene37284:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 39801539 39802567 39801539 ID=MS.gene37284
chr1.2 mRNA 39801539 39802567 39801539 ID=MS.gene37284.t1;Parent=MS.gene37284
chr1.2 exon 39801539 39802567 39801539 ID=MS.gene37284.t1.exon1;Parent=MS.gene37284.t1
chr1.2 CDS 39801539 39802567 39801539 ID=cds.MS.gene37284.t1;Parent=MS.gene37284.t1
Gene Sequence

>MS.gene37284

ATGAAGGCTTCACTCAAATTCCGTGATGAACAAAAGAAACCCTTATTAAGAGCCAAAGTACCCTTAAGTATTCTAGGAACACCATTCCAAAGTGGAATCGTAGCTGGTGATTCTAAAGAATTAACACTTAATCTCTCTACTTTCTTCCAATCCGGTCCAACGTTGAAACTCGCTTACCGACCCAACGACTCACAAAACCCGTTTTCATTGATCGTGAAAACCGGTACTGGACCGTTCGGTTCACCGTTGTCGAGTTCTATGCTGATGAGTTGCGAGTTCAATTTGCTGAACCGGAATGATAAAACCGGTTCGCCTCAACCGCTTTTCATGCTTCATTTTAAACCTAGGTTTGGGGATTTTTCTTTTAAGAAAACTCAGAGTTCGATTTTAGATGTTAAGGGTTATGCGTTTCCGCAAAACGGTGGCGTTTTGGGGAATGATGAGGCGAAATTTGAGTTTGTTGAATCGCCGGTGATTGGTGGGTTTAGTGTTGGGAAGGTGCCGTCGGCTGGGGCGATTGCGGGGTTGTTTTCAGGGACTGAGGTTGCGGCGAGGACTAGGGTTCCGATTAGGGGACGTGCCGCGGTGAATTTTAGGTGGGGGGTTAGGGTTCCGGCTGAGGTTAAGGGCGAAAGCGCGTTTGGAAGGGTTCCGTTTCTTGTGATGGATAAAATCGGGGTGGAACATTTGCCCGCGGAGTGTGGGGATTTGAAGAATTTGAAGAAAGGAAAGGTTGGTGCTGCTGGAGTTGGTGTTCCGACAAGTGCTGATGTGGCCGAGACGTGTTTTGCGGTTAAGAGGCAAATGGAGGTTTTGCAGGCGGAGAATGGATTGCTGAGGAATGCTGTGGAGGATCTTCGGAGAGAATTCGCTAGTGTAAGGATTGGAGGAGGGAAAAGCTTCGAGGGGAGAAAGAATGAGAAGAAAACCGGGTCGGATTTTAGTGGTTATCCTGGGAAATCAACTGAGGCTGATGCGAGCAAGGAATTGGAGAAGGCTTTGAGGGGAGCCACCGCTGTTGGAGCTTGA
Protein sequence

>MS.gene37284.t1

MKASLKFRDEQKKPLLRAKVPLSILGTPFQSGIVAGDSKELTLNLSTFFQSGPTLKLAYRPNDSQNPFSLIVKTGTGPFGSPLSSSMLMSCEFNLLNRNDKTGSPQPLFMLHFKPRFGDFSFKKTQSSILDVKGYAFPQNGGVLGNDEAKFEFVESPVIGGFSVGKVPSAGAIAGLFSGTEVAARTRVPIRGRAAVNFRWGVRVPAEVKGESAFGRVPFLVMDKIGVEHLPAECGDLKNLKKGKVGAAGVGVPTSADVAETCFAVKRQMEVLQAENGLLRNAVEDLRREFASVRIGGGKSFEGRKNEKKTGSDFSGYPGKSTEADASKELEKALRGATAVGA