Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37425.t1 | XP_003603151.2 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 9.50E-114 | 419.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37425.t1 | G7J7N1 | 93.8 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 6.8e-114 | 419.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene37425 | MS.gene00645 | PPI |
MS.gene37425 | MS.gene002071 | PPI |
MS.gene37425 | MS.gene047175 | PPI |
MS.gene37425 | MS.gene072034 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37425.t1 | MTR_3g104420 | 93.839 | 211 | 13 | 0 | 1 | 211 | 1 | 211 | 1.07e-149 | 417 |
MS.gene37425.t1 | MTR_1g016080 | 73.714 | 175 | 46 | 0 | 37 | 211 | 45 | 219 | 1.18e-85 | 255 |
MS.gene37425.t1 | MTR_2g006770 | 40.102 | 197 | 118 | 0 | 15 | 211 | 2 | 198 | 4.57e-53 | 172 |
MS.gene37425.t1 | MTR_8g089715 | 42.105 | 190 | 107 | 1 | 22 | 211 | 12 | 198 | 1.80e-51 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37425.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 5.52e-76 | 229 |
MS.gene37425.t1 | AT5G11870 | 51.185 | 211 | 100 | 2 | 2 | 211 | 1 | 209 | 6.95e-76 | 229 |
MS.gene37425.t1 | AT1G71190 | 40.201 | 199 | 116 | 2 | 14 | 211 | 3 | 199 | 3.92e-46 | 154 |
MS.gene37425.t1 | AT1G71190 | 31.818 | 198 | 93 | 2 | 14 | 211 | 3 | 158 | 8.66e-32 | 116 |
Find 51 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATCCTGAGTGAGTATATT+TGG | 0.268982 | 3.4:-91433066 | None:intergenic |
GCTGACGTGCGCAATCTTCT+TGG | 0.280702 | 3.4:+91431192 | MS.gene37425:CDS |
CGTCTTGTGGGACACTTTAC+CGG | 0.312597 | 3.4:+91431593 | MS.gene37425:CDS |
CACAAGACGCGATTGTTATC+AGG | 0.322003 | 3.4:-91431579 | None:intergenic |
GATTCTGCCTCTAGCTATTC+CGG | 0.361113 | 3.4:+91433022 | MS.gene37425:CDS |
GTCAGCAAATTGGTGTTGAT+TGG | 0.367918 | 3.4:-91431175 | None:intergenic |
TTGGGAGAACGAGGGATTGT+AGG | 0.369925 | 3.4:-91431156 | None:intergenic |
GACATCACGTTCAATGTGTT+TGG | 0.375491 | 3.4:-91431300 | None:intergenic |
GATTGCGCACGTCAGCAAAT+TGG | 0.395050 | 3.4:-91431185 | None:intergenic |
GGAATGATAGGTGTGGCTTT+TGG | 0.404387 | 3.4:+91431534 | MS.gene37425:CDS |
ATGGAACTTTCTTCAACATA+AGG | 0.406115 | 3.4:+91431373 | MS.gene37425:CDS |
AATATACTCACTCAGGATAC+TGG | 0.422853 | 3.4:+91433069 | MS.gene37425:CDS |
TAGCTAGAGGCAGAATCAAC+TGG | 0.437228 | 3.4:-91433016 | None:intergenic |
GCAGAATTTATAATGATATC+CGG | 0.438014 | 3.4:+91432979 | MS.gene37425:intron |
TGTTTGATTTGTGAGAGATT+CGG | 0.453716 | 3.4:+91432777 | MS.gene37425:CDS |
TCAGCAAATTGGTGTTGATT+GGG | 0.457838 | 3.4:-91431174 | None:intergenic |
GTATTCTACAGTGGAATGAT+AGG | 0.461617 | 3.4:+91431522 | MS.gene37425:CDS |
TGTAATTGTCTTAGTTCTCA+AGG | 0.470219 | 3.4:+91431480 | MS.gene37425:intron |
TAACGAATCACCGGTTCAAA+AGG | 0.470277 | 3.4:+91431061 | MS.gene37425:CDS |
GATTGTTATCAGGCTTCAAA+TGG | 0.481848 | 3.4:-91431569 | None:intergenic |
TCAAGGAGAGGTGTGGAGTT+GGG | 0.485074 | 3.4:+91431497 | MS.gene37425:CDS |
ACTGGAACATCATGCAGAAC+CGG | 0.489043 | 3.4:-91432998 | None:intergenic |
TGATAACAATCGCGTCTTGT+GGG | 0.489073 | 3.4:+91431581 | MS.gene37425:CDS |
CTCAAGGAGAGGTGTGGAGT+TGG | 0.490682 | 3.4:+91431496 | MS.gene37425:CDS |
GAGAGATTCGGCCAGAGGGC+TGG | 0.491566 | 3.4:+91432789 | MS.gene37425:CDS |
TTCATGAAGTACACAAAGAA+TGG | 0.508918 | 3.4:-91432844 | None:intergenic |
TTCTTTGTGTACTTCATGAA+CGG | 0.513090 | 3.4:+91432847 | MS.gene37425:CDS |
TGGTGTTGATTGGGAGAACG+AGG | 0.520280 | 3.4:-91431165 | None:intergenic |
CTGATAACAATCGCGTCTTG+TGG | 0.527046 | 3.4:+91431580 | MS.gene37425:CDS |
TTCTCTCATTAAGATGATGG+TGG | 0.537417 | 3.4:+91432734 | MS.gene37425:intron |
TACAACACAAACCAGCCCTC+TGG | 0.539060 | 3.4:-91432800 | None:intergenic |
ACAAGACATAAGCGAGGAGA+AGG | 0.540303 | 3.4:-91432757 | None:intergenic |
CGCTCCAAATATACTCACTC+AGG | 0.557163 | 3.4:+91433062 | MS.gene37425:CDS |
CGAATCACCGGTTCAAAAGG+TGG | 0.570656 | 3.4:+91431064 | MS.gene37425:CDS |
GTTGAAGAAAGTTCCATCCA+AGG | 0.570827 | 3.4:-91431367 | None:intergenic |
GGTGTTGATTGGGAGAACGA+GGG | 0.581569 | 3.4:-91431164 | None:intergenic |
GGAAGAGAAATCATCGCACA+TGG | 0.594853 | 3.4:+91431085 | MS.gene37425:CDS |
TGGATTATGTAACGAATCAC+CGG | 0.595706 | 3.4:+91431052 | MS.gene37425:CDS |
TTGTGAGAGATTCGGCCAGA+GGG | 0.595968 | 3.4:+91432785 | MS.gene37425:CDS |
TTGTCTTAGTTCTCAAGGAG+AGG | 0.597068 | 3.4:+91431485 | MS.gene37425:intron |
CGGTACATAAATGCTACTGC+CGG | 0.597991 | 3.4:-91433041 | None:intergenic |
ATTCAGGGTTTAGTTACCTG+TGG | 0.608781 | 3.4:-91433099 | None:intergenic |
TTAGTTCTCAAGGAGAGGTG+TGG | 0.627309 | 3.4:+91431490 | MS.gene37425:intron |
TTTGTGAGAGATTCGGCCAG+AGG | 0.628776 | 3.4:+91432784 | MS.gene37425:CDS |
GAAGAGAAATCATCGCACAT+GGG | 0.643928 | 3.4:+91431086 | MS.gene37425:CDS |
CTGAGTGAGTATATTTGGAG+CGG | 0.653196 | 3.4:-91433061 | None:intergenic |
CTACAGTGGAATGATAGGTG+TGG | 0.667383 | 3.4:+91431527 | MS.gene37425:CDS |
GCTACTGCCGGAATAGCTAG+AGG | 0.675765 | 3.4:-91433029 | None:intergenic |
AAGAGAAATCATCGCACATG+GGG | 0.694731 | 3.4:+91431087 | MS.gene37425:CDS |
AATCAAACAAGACATAAGCG+AGG | 0.717182 | 3.4:-91432763 | None:intergenic |
AGTTGGGTAGTATTCTACAG+TGG | 0.721008 | 3.4:+91431513 | MS.gene37425:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATTGAATTTACCTT+TGG | - | chr3.4:91432110-91432129 | None:intergenic | 15.0% |
!!! | AAAGGTAAATTCAATTTTAT+TGG | + | chr3.4:91432109-91432128 | MS.gene37425:intron | 15.0% |
!! | AAAGAATATACTTAGATGTA+TGG | - | chr3.4:91432671-91432690 | None:intergenic | 20.0% |
!! | AAGAATATACTTAGATGTAT+GGG | - | chr3.4:91432670-91432689 | None:intergenic | 20.0% |
!! | AATAACTTGATGTACAAAAT+AGG | - | chr3.4:91432912-91432931 | None:intergenic | 20.0% |
!! | ATACATCTAAGTATATTCTT+TGG | + | chr3.4:91432670-91432689 | MS.gene37425:intron | 20.0% |
!! | TCAAAACAAACATAACTAAA+GGG | + | chr3.4:91432154-91432173 | MS.gene37425:intron | 20.0% |
!! | TTCAAAACAAACATAACTAA+AGG | + | chr3.4:91432153-91432172 | MS.gene37425:intron | 20.0% |
!! | TTGATACATTTACATAAAGT+GGG | + | chr3.4:91432007-91432026 | MS.gene37425:intron | 20.0% |
!! | TTTGATACATTTACATAAAG+TGG | + | chr3.4:91432006-91432025 | MS.gene37425:intron | 20.0% |
!!! | AAAATTGATTTTGACATGTT+TGG | - | chr3.4:91431850-91431869 | None:intergenic | 20.0% |
!!! | CTAAATATTATACATTTTCG+TGG | + | chr3.4:91432447-91432466 | MS.gene37425:intron | 20.0% |
! | AAAAGTGAGATGAATGTAAA+TGG | + | chr3.4:91431683-91431702 | MS.gene37425:intron | 25.0% |
! | AATTGTAATGTAACACTAAC+CGG | - | chr3.4:91431615-91431634 | None:intergenic | 25.0% |
! | ACTAATTAAGAATAGAATCG+CGG | - | chr3.4:91431416-91431435 | None:intergenic | 25.0% |
! | AGGATAAAAATCATTTGTAG+AGG | + | chr3.4:91432046-91432065 | MS.gene37425:intron | 25.0% |
! | CAAAACAAACATAACTAAAG+GGG | + | chr3.4:91432155-91432174 | MS.gene37425:intron | 25.0% |
! | GAATGTAAATGGTTTATGTT+TGG | + | chr3.4:91431694-91431713 | MS.gene37425:intron | 25.0% |
! | GCAGAATTTATAATGATATC+CGG | + | chr3.4:91432979-91432998 | MS.gene37425:intron | 25.0% |
! | TCAAATTGTGTTGAAAGATT+GGG | - | chr3.4:91432199-91432218 | None:intergenic | 25.0% |
! | TCAACACAATTTGAATTGTT+TGG | + | chr3.4:91432205-91432224 | MS.gene37425:intron | 25.0% |
! | TGCTTCTTCATGATATTTAT+CGG | + | chr3.4:91431263-91431282 | MS.gene37425:intron | 25.0% |
! | TTCAAATTGTGTTGAAAGAT+TGG | - | chr3.4:91432200-91432219 | None:intergenic | 25.0% |
!! | CAAATTAGAATTGATTCCAA+AGG | + | chr3.4:91432091-91432110 | MS.gene37425:intron | 25.0% |
!!! | AAATTTCCCATTTTTAGTTG+TGG | + | chr3.4:91431323-91431342 | MS.gene37425:CDS | 25.0% |
!!! | AATTTCCCATTTTTAGTTGT+GGG | + | chr3.4:91431324-91431343 | MS.gene37425:CDS | 25.0% |
!!! | ATTTTGATTAGATCGGAAAA+CGG | + | chr3.4:91432602-91432621 | MS.gene37425:intron | 25.0% |
!!! | GGTTTGTATTTTTTGTAGTT+TGG | + | chr3.4:91432226-91432245 | MS.gene37425:intron | 25.0% |
AAAACACCCACAACTAAAAA+TGG | - | chr3.4:91431333-91431352 | None:intergenic | 30.0% | |
AAACACCCACAACTAAAAAT+GGG | - | chr3.4:91431332-91431351 | None:intergenic | 30.0% | |
AATTCTGAGTACAAAGAAGT+AGG | - | chr3.4:91431224-91431243 | None:intergenic | 30.0% | |
ATGGAACTTTCTTCAACATA+AGG | + | chr3.4:91431373-91431392 | MS.gene37425:CDS | 30.0% | |
CCGATCTAATCAAAATCAAT+CGG | - | chr3.4:91432598-91432617 | None:intergenic | 30.0% | |
CTAATTAAGAATAGAATCGC+GGG | - | chr3.4:91431415-91431434 | None:intergenic | 30.0% | |
CTGAAATCAATTATGCAACA+TGG | + | chr3.4:91431876-91431895 | MS.gene37425:intron | 30.0% | |
TACATTTACATAAAGTGGGT+TGG | + | chr3.4:91432011-91432030 | MS.gene37425:intron | 30.0% | |
TTCATGAAGTACACAAAGAA+TGG | - | chr3.4:91432847-91432866 | None:intergenic | 30.0% | |
TTCTTTGTGTACTTCATGAA+CGG | + | chr3.4:91432847-91432866 | MS.gene37425:CDS | 30.0% | |
! | CAAAATCAATCGGTTTAAGT+TGG | - | chr3.4:91432588-91432607 | None:intergenic | 30.0% |
! | CTTTTCTCTCATTAAGATGA+TGG | + | chr3.4:91432731-91432750 | MS.gene37425:intron | 30.0% |
! | TGTAATTGTCTTAGTTCTCA+AGG | + | chr3.4:91431480-91431499 | MS.gene37425:intron | 30.0% |
! | TGTTGCATAATTGATTTCAG+AGG | - | chr3.4:91431876-91431895 | None:intergenic | 30.0% |
!! | TGATATTTATCGGTTTCAAC+AGG | + | chr3.4:91431273-91431292 | MS.gene37425:intron | 30.0% |
!! | TGTTTGATTTGTGAGAGATT+CGG | + | chr3.4:91432777-91432796 | MS.gene37425:CDS | 30.0% |
!! | TGTTTTGAATGAGACATGTT+TGG | - | chr3.4:91432142-91432161 | None:intergenic | 30.0% |
!! | TTTTGATTAGATCGGAAAAC+GGG | + | chr3.4:91432603-91432622 | MS.gene37425:intron | 30.0% |
!!! | ATTTTTAGTTGTGGGTGTTT+TGG | + | chr3.4:91431332-91431351 | MS.gene37425:CDS | 30.0% |
!!! | CCGATTGATTTTGATTAGAT+CGG | + | chr3.4:91432595-91432614 | MS.gene37425:intron | 30.0% |
!!! | TTTTTAGTTGTGGGTGTTTT+GGG | + | chr3.4:91431333-91431352 | MS.gene37425:CDS | 30.0% |
AACATAACTAAAGGGGTTCT+CGG | + | chr3.4:91432162-91432181 | MS.gene37425:intron | 35.0% | |
AATATACTCACTCAGGATAC+TGG | + | chr3.4:91433069-91433088 | MS.gene37425:CDS | 35.0% | |
AATCAAACAAGACATAAGCG+AGG | - | chr3.4:91432766-91432785 | None:intergenic | 35.0% | |
AATTCTGTATGCTAGTTGGT+TGG | + | chr3.4:91432954-91432973 | MS.gene37425:intron | 35.0% | |
ACCTGAATCAACTCAATGTT+TGG | + | chr3.4:91432535-91432554 | MS.gene37425:intron | 35.0% | |
CCTGAATCAACTCAATGTTT+GGG | + | chr3.4:91432536-91432555 | MS.gene37425:intron | 35.0% | |
GATTGTTATCAGGCTTCAAA+TGG | - | chr3.4:91431572-91431591 | None:intergenic | 35.0% | |
GTATCCTGAGTGAGTATATT+TGG | - | chr3.4:91433069-91433088 | None:intergenic | 35.0% | |
GTATTCTACAGTGGAATGAT+AGG | + | chr3.4:91431522-91431541 | MS.gene37425:CDS | 35.0% | |
TACTTAGATGTATGGGTAAG+TGG | - | chr3.4:91432663-91432682 | None:intergenic | 35.0% | |
TGGATTATGTAACGAATCAC+CGG | + | chr3.4:91431052-91431071 | MS.gene37425:CDS | 35.0% | |
! | TTCTCTCATTAAGATGATGG+TGG | + | chr3.4:91432734-91432753 | MS.gene37425:intron | 35.0% |
!! | AAACTTGAAGTGGTTTGGTT+CGG | + | chr3.4:91432275-91432294 | MS.gene37425:intron | 35.0% |
!! | ATTGAGTTGATTCAGGTGTT+AGG | - | chr3.4:91432532-91432551 | None:intergenic | 35.0% |
!! | TCAGCAAATTGGTGTTGATT+GGG | - | chr3.4:91431177-91431196 | None:intergenic | 35.0% |
AAGAGAAATCATCGCACATG+GGG | + | chr3.4:91431087-91431106 | MS.gene37425:CDS | 40.0% | |
ACATAACTAAAGGGGTTCTC+GGG | + | chr3.4:91432163-91432182 | MS.gene37425:intron | 40.0% | |
AGTTGGGTAGTATTCTACAG+TGG | + | chr3.4:91431513-91431532 | MS.gene37425:CDS | 40.0% | |
CAAGCAAACTTGAAGTGGTT+TGG | + | chr3.4:91432270-91432289 | MS.gene37425:intron | 40.0% | |
CAGGTTTGAATCAATTCTCG+AGG | + | chr3.4:91431799-91431818 | MS.gene37425:intron | 40.0% | |
CTGAGTGAGTATATTTGGAG+CGG | - | chr3.4:91433064-91433083 | None:intergenic | 40.0% | |
GAAGAGAAATCATCGCACAT+GGG | + | chr3.4:91431086-91431105 | MS.gene37425:CDS | 40.0% | |
GACATCACGTTCAATGTGTT+TGG | - | chr3.4:91431303-91431322 | None:intergenic | 40.0% | |
GCTGAATTCTGTATGCTAGT+TGG | + | chr3.4:91432950-91432969 | MS.gene37425:intron | 40.0% | |
GTTGAAGAAAGTTCCATCCA+AGG | - | chr3.4:91431370-91431389 | None:intergenic | 40.0% | |
TAAGAATAGAATCGCGGGAA+TGG | - | chr3.4:91431410-91431429 | None:intergenic | 40.0% | |
TCTGAGTACAAAGAAGTAGG+TGG | - | chr3.4:91431221-91431240 | None:intergenic | 40.0% | |
TGATAACAATCGCGTCTTGT+GGG | + | chr3.4:91431581-91431600 | MS.gene37425:CDS | 40.0% | |
! | AAGCGACAAATACTAGCTTC+AGG | + | chr3.4:91431780-91431799 | MS.gene37425:intron | 40.0% |
! | CAAACCACTTCAAGTTTGCT+TGG | - | chr3.4:91432272-91432291 | None:intergenic | 40.0% |
! | CACATTTGGGTTCAAAGTGT+TGG | + | chr3.4:91432401-91432420 | MS.gene37425:intron | 40.0% |
! | TTCAAGTTTGCTTGGTTGGT+TGG | - | chr3.4:91432264-91432283 | None:intergenic | 40.0% |
! | TTCTCTTCCACCTTTTGAAC+CGG | - | chr3.4:91431074-91431093 | None:intergenic | 40.0% |
! | TTGTCTTAGTTCTCAAGGAG+AGG | + | chr3.4:91431485-91431504 | MS.gene37425:intron | 40.0% |
!! | AATCCAGAAGTGCTCACATT+TGG | + | chr3.4:91432387-91432406 | MS.gene37425:intron | 40.0% |
!! | ATCCAGAAGTGCTCACATTT+GGG | + | chr3.4:91432388-91432407 | MS.gene37425:intron | 40.0% |
!! | CCCAAACATTGAGTTGATTC+AGG | - | chr3.4:91432539-91432558 | None:intergenic | 40.0% |
!! | GTCAGCAAATTGGTGTTGAT+TGG | - | chr3.4:91431178-91431197 | None:intergenic | 40.0% |
!! | TAACGAATCACCGGTTCAAA+AGG | + | chr3.4:91431061-91431080 | MS.gene37425:CDS | 40.0% |
!!! | TTTGGGCTTTGTTTTTGCCT+TGG | + | chr3.4:91431350-91431369 | MS.gene37425:CDS | 40.0% |
AAATCAACCAACCTGACGCA+TGG | + | chr3.4:91432634-91432653 | MS.gene37425:intron | 45.0% | |
AACCCAAATGTGAGCACTTC+TGG | - | chr3.4:91432393-91432412 | None:intergenic | 45.0% | |
ACAAGACATAAGCGAGGAGA+AGG | - | chr3.4:91432760-91432779 | None:intergenic | 45.0% | |
ACTGGAACATCATGCAGAAC+CGG | - | chr3.4:91433001-91433020 | None:intergenic | 45.0% | |
CACAAGACGCGATTGTTATC+AGG | - | chr3.4:91431582-91431601 | None:intergenic | 45.0% | |
CATGTTTGGCTGTTCTCAAG+TGG | - | chr3.4:91431836-91431855 | None:intergenic | 45.0% | |
CCAACCAAGCAAACTTGAAG+TGG | + | chr3.4:91432265-91432284 | MS.gene37425:intron | 45.0% | |
CGCTCCAAATATACTCACTC+AGG | + | chr3.4:91433062-91433081 | MS.gene37425:CDS | 45.0% | |
CGGTACATAAATGCTACTGC+CGG | - | chr3.4:91433044-91433063 | None:intergenic | 45.0% | |
CTACAGTGGAATGATAGGTG+TGG | + | chr3.4:91431527-91431546 | MS.gene37425:CDS | 45.0% | |
CTGATAACAATCGCGTCTTG+TGG | + | chr3.4:91431580-91431599 | MS.gene37425:CDS | 45.0% | |
GATTCTGCCTCTAGCTATTC+CGG | + | chr3.4:91433022-91433041 | MS.gene37425:CDS | 45.0% | |
GGAAGAGAAATCATCGCACA+TGG | + | chr3.4:91431085-91431104 | MS.gene37425:CDS | 45.0% | |
TAGCTAGAGGCAGAATCAAC+TGG | - | chr3.4:91433019-91433038 | None:intergenic | 45.0% | |
! | CCACTTCAAGTTTGCTTGGT+TGG | - | chr3.4:91432268-91432287 | None:intergenic | 45.0% |
! | GGAATGATAGGTGTGGCTTT+TGG | + | chr3.4:91431534-91431553 | MS.gene37425:CDS | 45.0% |
! | TGGGTTGGACAATAGCTTTG+AGG | + | chr3.4:91432026-91432045 | MS.gene37425:intron | 45.0% |
! | TTAGTTCTCAAGGAGAGGTG+TGG | + | chr3.4:91431490-91431509 | MS.gene37425:intron | 45.0% |
!!! | GGATACTGGTTTTTGTCCAC+AGG | + | chr3.4:91433083-91433102 | MS.gene37425:CDS | 45.0% |
!!! | GGCTTTGTTTTTGCCTTGGA+TGG | + | chr3.4:91431354-91431373 | MS.gene37425:CDS | 45.0% |
CGTCTTGTGGGACACTTTAC+CGG | + | chr3.4:91431593-91431612 | MS.gene37425:CDS | 50.0% | |
GATTGCGCACGTCAGCAAAT+TGG | - | chr3.4:91431188-91431207 | None:intergenic | 50.0% | |
GTAAGTGGTAACCATGCGTC+AGG | - | chr3.4:91432648-91432667 | None:intergenic | 50.0% | |
TACAACACAAACCAGCCCTC+TGG | - | chr3.4:91432803-91432822 | None:intergenic | 50.0% | |
TTGGGAGAACGAGGGATTGT+AGG | - | chr3.4:91431159-91431178 | None:intergenic | 50.0% | |
TTGTGAGAGATTCGGCCAGA+GGG | + | chr3.4:91432785-91432804 | MS.gene37425:CDS | 50.0% | |
TTTGTGAGAGATTCGGCCAG+AGG | + | chr3.4:91432784-91432803 | MS.gene37425:CDS | 50.0% | |
! | TCAAGGAGAGGTGTGGAGTT+GGG | + | chr3.4:91431497-91431516 | MS.gene37425:CDS | 50.0% |
!! | CGAATCACCGGTTCAAAAGG+TGG | + | chr3.4:91431064-91431083 | MS.gene37425:CDS | 50.0% |
!! | GGTGTTGATTGGGAGAACGA+GGG | - | chr3.4:91431167-91431186 | None:intergenic | 50.0% |
!! | TGGTGTTGATTGGGAGAACG+AGG | - | chr3.4:91431168-91431187 | None:intergenic | 50.0% |
CTAAAGGGGTTCTCGGGTAC+TGG | + | chr3.4:91432169-91432188 | MS.gene37425:intron | 55.0% | |
GCTACTGCCGGAATAGCTAG+AGG | - | chr3.4:91433032-91433051 | None:intergenic | 55.0% | |
GCTGACGTGCGCAATCTTCT+TGG | + | chr3.4:91431192-91431211 | MS.gene37425:CDS | 55.0% | |
GTGGTAACCATGCGTCAGGT+TGG | - | chr3.4:91432644-91432663 | None:intergenic | 55.0% | |
! | CTCAAGGAGAGGTGTGGAGT+TGG | + | chr3.4:91431496-91431515 | MS.gene37425:CDS | 55.0% |
GAGAGATTCGGCCAGAGGGC+TGG | + | chr3.4:91432789-91432808 | MS.gene37425:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 91431048 | 91433112 | 91431048 | ID=MS.gene37425 |
chr3.4 | mRNA | 91431048 | 91433112 | 91431048 | ID=MS.gene37425.t1;Parent=MS.gene37425 |
chr3.4 | exon | 91431048 | 91431213 | 91431048 | ID=MS.gene37425.t1.exon1;Parent=MS.gene37425.t1 |
chr3.4 | CDS | 91431048 | 91431213 | 91431048 | ID=cds.MS.gene37425.t1;Parent=MS.gene37425.t1 |
chr3.4 | exon | 91431295 | 91431394 | 91431295 | ID=MS.gene37425.t1.exon2;Parent=MS.gene37425.t1 |
chr3.4 | CDS | 91431295 | 91431394 | 91431295 | ID=cds.MS.gene37425.t1;Parent=MS.gene37425.t1 |
chr3.4 | exon | 91431494 | 91431614 | 91431494 | ID=MS.gene37425.t1.exon3;Parent=MS.gene37425.t1 |
chr3.4 | CDS | 91431494 | 91431614 | 91431494 | ID=cds.MS.gene37425.t1;Parent=MS.gene37425.t1 |
chr3.4 | exon | 91432747 | 91432868 | 91432747 | ID=MS.gene37425.t1.exon4;Parent=MS.gene37425.t1 |
chr3.4 | CDS | 91432747 | 91432868 | 91432747 | ID=cds.MS.gene37425.t1;Parent=MS.gene37425.t1 |
chr3.4 | exon | 91432983 | 91433112 | 91432983 | ID=MS.gene37425.t1.exon5;Parent=MS.gene37425.t1 |
chr3.4 | CDS | 91432983 | 91433112 | 91432983 | ID=cds.MS.gene37425.t1;Parent=MS.gene37425.t1 |
Gene Sequence |
Protein sequence |